Query 013210
Match_columns 447
No_of_seqs 426 out of 3402
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ndn_A O-succinylhomoserine su 100.0 1.4E-56 4.6E-61 449.4 43.8 382 37-436 23-413 (414)
2 3ri6_A O-acetylhomoserine sulf 100.0 4.8E-57 1.6E-61 453.8 35.4 380 40-437 26-430 (430)
3 1qgn_A Protein (cystathionine 100.0 9.8E-55 3.4E-59 438.3 46.1 386 36-439 51-445 (445)
4 3nmy_A Xometc, cystathionine g 100.0 1.4E-54 4.8E-59 432.8 40.2 372 39-437 18-397 (400)
5 2fq6_A Cystathionine beta-lyas 100.0 7.8E-55 2.7E-59 436.3 37.6 379 40-439 25-414 (415)
6 3qhx_A Cystathionine gamma-syn 100.0 1.4E-52 4.8E-57 418.1 43.7 370 39-436 16-391 (392)
7 3acz_A Methionine gamma-lyase; 100.0 1.8E-51 6.2E-56 409.7 43.7 380 40-438 5-388 (389)
8 1n8p_A Cystathionine gamma-lya 100.0 1.6E-50 5.4E-55 403.3 38.9 377 37-440 4-392 (393)
9 3cog_A Cystathionine gamma-lya 100.0 1.5E-49 5E-54 397.5 43.8 378 37-441 15-400 (403)
10 1gc0_A Methionine gamma-lyase; 100.0 2.2E-49 7.4E-54 396.0 40.2 382 40-439 9-397 (398)
11 2ctz_A O-acetyl-L-homoserine s 100.0 8.7E-49 3E-53 394.3 41.6 384 40-436 2-420 (421)
12 2cb1_A O-acetyl homoserine sul 100.0 1.3E-47 4.5E-52 384.8 45.3 379 40-438 2-411 (412)
13 1e5e_A MGL, methionine gamma-l 100.0 4.8E-47 1.6E-51 379.6 44.7 385 39-441 6-397 (404)
14 2rfv_A Methionine gamma-lyase; 100.0 2.3E-45 7.8E-50 366.8 43.3 383 39-439 7-396 (398)
15 1cs1_A CGS, protein (cystathio 100.0 1.9E-43 6.5E-48 351.5 43.3 373 40-440 4-384 (386)
16 1ibj_A CBL, cystathionine beta 100.0 1E-42 3.4E-47 353.2 39.6 373 39-439 85-462 (464)
17 1pff_A Methionine gamma-lyase; 100.0 3E-38 1E-42 307.1 32.1 323 103-439 2-330 (331)
18 3jzl_A Putative cystathionine 100.0 2.3E-32 7.9E-37 272.3 30.2 327 86-439 49-408 (409)
19 3i16_A Aluminum resistance pro 100.0 3.4E-32 1.1E-36 272.0 29.5 329 85-439 62-425 (427)
20 3hvy_A Cystathionine beta-lyas 100.0 6.8E-32 2.3E-36 269.8 29.6 329 88-439 66-425 (427)
21 4hvk_A Probable cysteine desul 100.0 2.7E-32 9.3E-37 269.3 22.1 336 65-439 8-369 (382)
22 1eg5_A Aminotransferase; PLP-d 100.0 1.1E-31 3.6E-36 265.6 23.7 336 68-439 12-372 (384)
23 3lvm_A Cysteine desulfurase; s 100.0 1.3E-31 4.5E-36 268.8 22.9 328 74-439 40-395 (423)
24 3cai_A Possible aminotransfera 100.0 2.3E-31 8E-36 265.6 23.0 322 74-439 44-405 (406)
25 3ly1_A Putative histidinol-pho 100.0 1.6E-30 5.4E-35 254.7 28.0 281 97-440 49-349 (354)
26 3a2b_A Serine palmitoyltransfe 100.0 7.6E-30 2.6E-34 254.1 33.3 296 92-441 81-390 (398)
27 4eb5_A Probable cysteine desul 100.0 5.2E-31 1.8E-35 260.5 23.9 334 67-439 10-369 (382)
28 3get_A Histidinol-phosphate am 100.0 1.1E-30 3.6E-35 257.2 24.5 274 102-438 68-362 (365)
29 3ffh_A Histidinol-phosphate am 100.0 6.6E-30 2.2E-34 251.3 29.6 278 98-438 66-361 (363)
30 1kmj_A Selenocysteine lyase; p 100.0 1.8E-30 6.1E-35 258.7 25.4 323 74-440 41-402 (406)
31 1t3i_A Probable cysteine desul 100.0 3.6E-30 1.2E-34 257.8 27.3 327 74-440 46-410 (420)
32 3vax_A Putative uncharacterize 100.0 1.8E-31 6.2E-36 265.7 16.9 336 67-440 30-397 (400)
33 1bs0_A Protein (8-amino-7-oxon 100.0 2.3E-29 7.8E-34 249.4 31.6 289 97-439 82-383 (384)
34 3dzz_A Putative pyridoxal 5'-p 100.0 1.1E-29 3.7E-34 252.0 29.1 295 91-438 58-384 (391)
35 3tqx_A 2-amino-3-ketobutyrate 100.0 2.5E-29 8.5E-34 250.1 31.6 312 74-441 64-394 (399)
36 2w8t_A SPT, serine palmitoyltr 100.0 2.7E-29 9.2E-34 252.8 31.0 291 97-439 107-411 (427)
37 3hdo_A Histidinol-phosphate am 100.0 1.4E-29 4.7E-34 248.9 28.0 282 99-441 65-353 (360)
38 1fc4_A 2-amino-3-ketobutyrate 100.0 2.6E-29 8.9E-34 250.4 29.7 313 74-441 66-395 (401)
39 1b5p_A Protein (aspartate amin 100.0 2.1E-29 7.1E-34 250.0 28.4 252 101-383 70-351 (385)
40 1fg7_A Histidinol phosphate am 100.0 4.9E-29 1.7E-33 244.8 30.2 275 100-439 59-354 (356)
41 3euc_A Histidinol-phosphate am 100.0 8.1E-30 2.8E-34 251.0 24.3 279 98-439 66-364 (367)
42 2dr1_A PH1308 protein, 386AA l 100.0 5.4E-29 1.9E-33 246.4 30.1 290 97-439 51-375 (386)
43 3nra_A Aspartate aminotransfer 100.0 3.5E-29 1.2E-33 249.8 28.1 285 97-438 80-400 (407)
44 3h14_A Aminotransferase, class 100.0 4.2E-29 1.4E-33 248.2 28.2 284 101-439 70-378 (391)
45 4dq6_A Putative pyridoxal phos 100.0 4.2E-29 1.4E-33 247.8 27.7 295 90-438 62-388 (391)
46 2z61_A Probable aspartate amin 100.0 8.4E-29 2.9E-33 244.1 29.6 276 101-438 68-366 (370)
47 3op7_A Aminotransferase class 100.0 6.5E-29 2.2E-33 245.3 28.7 242 101-369 65-326 (375)
48 3ele_A Amino transferase; RER0 100.0 2.7E-29 9.2E-34 250.1 25.8 278 102-438 79-395 (398)
49 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 9.2E-30 3.1E-34 250.7 22.1 295 91-440 45-367 (371)
50 3kax_A Aminotransferase, class 100.0 2.2E-28 7.5E-33 241.9 32.1 294 91-438 55-380 (383)
51 3p1t_A Putative histidinol-pho 100.0 3.7E-28 1.3E-32 236.1 32.5 275 97-440 49-334 (337)
52 3dyd_A Tyrosine aminotransfera 100.0 7.3E-29 2.5E-33 249.6 28.0 243 100-370 97-380 (427)
53 3fvs_A Kynurenine--oxoglutarat 100.0 4.8E-29 1.7E-33 250.2 26.5 289 102-439 70-418 (422)
54 1v2d_A Glutamine aminotransfer 100.0 1.8E-28 6.2E-33 242.7 30.0 282 101-439 63-367 (381)
55 1o4s_A Aspartate aminotransfer 100.0 2E-28 6.7E-33 243.3 30.2 277 101-438 80-384 (389)
56 1j32_A Aspartate aminotransfer 100.0 1E-28 3.5E-33 245.0 27.7 216 101-324 69-315 (388)
57 3kki_A CAI-1 autoinducer synth 100.0 2.5E-28 8.6E-33 244.1 30.5 311 74-442 80-403 (409)
58 3aow_A Putative uncharacterize 100.0 1.9E-28 6.3E-33 248.1 29.8 287 101-438 120-444 (448)
59 3zrp_A Serine-pyruvate aminotr 100.0 8.4E-29 2.9E-33 244.7 26.4 290 98-439 34-359 (384)
60 2x5d_A Probable aminotransfera 100.0 3E-28 1E-32 243.8 30.6 270 101-422 77-379 (412)
61 3g0t_A Putative aminotransfera 100.0 3.3E-29 1.1E-33 252.5 23.5 292 101-439 84-433 (437)
62 3e2y_A Kynurenine-oxoglutarate 100.0 1.6E-28 5.4E-33 245.4 28.2 288 101-438 63-408 (410)
63 2dou_A Probable N-succinyldiam 100.0 4.9E-29 1.7E-33 246.3 24.2 284 99-438 63-373 (376)
64 1u08_A Hypothetical aminotrans 100.0 1.8E-28 6.1E-33 243.2 27.6 285 101-437 69-384 (386)
65 1vjo_A Alanine--glyoxylate ami 100.0 8.1E-29 2.8E-33 246.1 25.1 296 93-439 61-391 (393)
66 1gd9_A Aspartate aminotransfer 100.0 2.4E-28 8.3E-33 242.4 27.7 284 101-439 65-382 (389)
67 3f9t_A TDC, L-tyrosine decarbo 100.0 1.2E-28 4.2E-33 244.3 25.0 308 66-439 39-394 (397)
68 1yiz_A Kynurenine aminotransfe 100.0 3.3E-28 1.1E-32 244.8 28.3 289 101-439 79-425 (429)
69 3ftb_A Histidinol-phosphate am 100.0 2.8E-28 9.6E-33 239.3 26.7 278 98-440 60-358 (361)
70 1lc5_A COBD, L-threonine-O-3-p 100.0 2.3E-28 7.9E-33 240.5 26.0 277 100-439 60-356 (364)
71 1c7n_A Cystalysin; transferase 100.0 5.4E-28 1.8E-32 240.7 28.8 288 101-439 68-393 (399)
72 3jtx_A Aminotransferase; NP_28 100.0 6.1E-28 2.1E-32 240.0 29.1 287 102-438 69-393 (396)
73 3l8a_A METC, putative aminotra 100.0 1.6E-28 5.5E-33 246.6 25.0 296 91-438 92-417 (421)
74 1elu_A L-cysteine/L-cystine C- 100.0 1.6E-28 5.3E-33 243.4 24.0 288 99-439 59-388 (390)
75 3piu_A 1-aminocyclopropane-1-c 100.0 4.9E-28 1.7E-32 244.1 27.8 285 101-438 88-427 (435)
76 2o0r_A RV0858C (N-succinyldiam 100.0 6E-28 2.1E-32 241.6 28.1 296 102-440 65-393 (411)
77 3ezs_A Aminotransferase ASPB; 100.0 5.5E-28 1.9E-32 238.7 27.3 279 102-439 62-371 (376)
78 2zc0_A Alanine glyoxylate tran 100.0 5.4E-28 1.8E-32 241.4 27.5 289 101-439 77-404 (407)
79 1vp4_A Aminotransferase, putat 100.0 2.7E-28 9.4E-33 245.2 25.5 289 101-440 87-419 (425)
80 3fdb_A Beta C-S lyase, putativ 100.0 1.6E-28 5.4E-33 242.5 23.3 284 102-439 61-372 (377)
81 2zyj_A Alpha-aminodipate amino 100.0 8.2E-28 2.8E-32 239.4 28.5 289 100-439 75-393 (397)
82 1iay_A ACC synthase 2, 1-amino 100.0 9.1E-28 3.1E-32 241.6 29.1 286 101-439 85-423 (428)
83 2o1b_A Aminotransferase, class 100.0 1.7E-28 5.8E-33 245.1 23.4 284 101-438 87-398 (404)
84 3cq5_A Histidinol-phosphate am 100.0 5.1E-28 1.7E-32 238.6 25.9 272 102-439 72-364 (369)
85 2bwn_A 5-aminolevulinate synth 100.0 6.5E-27 2.2E-31 233.1 34.1 310 74-440 67-397 (401)
86 3b46_A Aminotransferase BNA3; 100.0 6.3E-28 2.1E-32 244.2 26.8 289 102-439 98-443 (447)
87 1xi9_A Putative transaminase; 100.0 1.4E-27 4.9E-32 238.4 28.6 212 101-321 80-324 (406)
88 3if2_A Aminotransferase; YP_26 100.0 3E-28 1E-32 246.2 23.9 260 98-385 82-398 (444)
89 3fkd_A L-threonine-O-3-phospha 100.0 7.6E-28 2.6E-32 235.5 25.6 276 101-440 52-339 (350)
90 1iug_A Putative aspartate amin 100.0 5E-28 1.7E-32 236.4 23.7 285 99-439 34-344 (352)
91 1bw0_A TAT, protein (tyrosine 100.0 1.3E-27 4.5E-32 239.3 26.8 241 101-369 77-368 (416)
92 2r2n_A Kynurenine/alpha-aminoa 100.0 3.4E-27 1.2E-31 237.2 29.8 272 116-438 110-419 (425)
93 1jg8_A L-ALLO-threonine aldola 100.0 9.2E-28 3.1E-32 234.4 24.9 283 97-440 36-343 (347)
94 1d2f_A MALY protein; aminotran 100.0 3.8E-27 1.3E-31 234.0 29.3 270 102-423 66-371 (390)
95 2gb3_A Aspartate aminotransfer 100.0 7.5E-28 2.6E-32 240.8 24.3 290 101-439 81-402 (409)
96 3nnk_A Ureidoglycine-glyoxylat 100.0 8.8E-28 3E-32 239.8 24.5 291 99-440 46-387 (411)
97 3ppl_A Aspartate aminotransfer 100.0 2.6E-27 9E-32 238.1 27.8 298 90-439 71-420 (427)
98 3isl_A Purine catabolism prote 100.0 1.9E-27 6.6E-32 237.7 26.5 292 98-439 43-386 (416)
99 2x5f_A Aspartate_tyrosine_phen 100.0 9.4E-28 3.2E-32 241.6 24.2 280 101-438 90-428 (430)
100 1qz9_A Kynureninase; kynurenin 100.0 1.5E-27 5.1E-32 238.8 24.9 316 68-439 39-398 (416)
101 2z9v_A Aspartate aminotransfer 100.0 3.2E-27 1.1E-31 234.4 27.0 293 99-439 42-367 (392)
102 3f0h_A Aminotransferase; RER07 100.0 1.5E-27 5E-32 235.5 23.8 290 99-441 52-372 (376)
103 3t18_A Aminotransferase class 100.0 1E-26 3.5E-31 232.7 30.2 278 102-440 82-411 (413)
104 3ht4_A Aluminum resistance pro 100.0 2.6E-27 8.7E-32 237.8 25.6 263 87-371 56-343 (431)
105 3a9z_A Selenocysteine lyase; P 100.0 6.9E-28 2.3E-32 242.6 20.9 334 74-439 36-424 (432)
106 3ruy_A Ornithine aminotransfer 100.0 7.6E-28 2.6E-32 239.1 20.9 286 96-439 75-390 (392)
107 3nyt_A Aminotransferase WBPE; 100.0 4.9E-27 1.7E-31 231.4 26.1 307 97-440 33-361 (367)
108 1m32_A 2-aminoethylphosphonate 100.0 2.3E-27 7.9E-32 232.6 23.6 289 99-440 37-362 (366)
109 2ch1_A 3-hydroxykynurenine tra 100.0 5.1E-27 1.7E-31 233.2 25.8 291 99-437 51-377 (396)
110 3g7q_A Valine-pyruvate aminotr 100.0 6.8E-27 2.3E-31 234.0 26.7 257 99-384 75-371 (417)
111 3qgu_A LL-diaminopimelate amin 100.0 1.5E-27 5.2E-32 241.4 22.0 308 74-439 89-436 (449)
112 3rq1_A Aminotransferase class 100.0 9E-27 3.1E-31 233.5 27.2 277 102-439 83-415 (418)
113 3kgw_A Alanine-glyoxylate amin 100.0 6.8E-27 2.3E-31 231.7 25.8 291 98-439 55-384 (393)
114 3frk_A QDTB; aminotransferase, 100.0 3.9E-27 1.3E-31 232.5 23.6 307 97-440 34-365 (373)
115 3ihj_A Alanine aminotransferas 100.0 2.2E-26 7.5E-31 235.8 29.2 216 102-325 132-408 (498)
116 3tcm_A Alanine aminotransferas 100.0 2.6E-26 8.9E-31 235.5 29.6 288 102-441 137-496 (500)
117 2huf_A Alanine glyoxylate amin 100.0 1E-26 3.4E-31 230.9 25.6 292 97-438 50-378 (393)
118 7aat_A Aspartate aminotransfer 100.0 2.1E-26 7.1E-31 229.5 26.9 214 101-321 73-337 (401)
119 3e9k_A Kynureninase; kynurenin 100.0 1.4E-27 4.9E-32 242.8 18.7 293 99-443 111-461 (465)
120 1b9h_A AHBA synthase, protein 100.0 4.6E-26 1.6E-30 226.0 28.6 311 94-440 33-385 (388)
121 1uu1_A Histidinol-phosphate am 100.0 2.3E-26 8E-31 223.6 25.8 262 100-438 57-333 (335)
122 3ez1_A Aminotransferase MOCR f 100.0 2.1E-26 7.1E-31 231.2 26.0 288 101-439 72-415 (423)
123 3nx3_A Acoat, acetylornithine 99.9 2.4E-26 8.1E-31 228.7 26.0 291 91-440 70-392 (395)
124 3f6t_A Aspartate aminotransfer 99.9 5.7E-27 1.9E-31 242.0 22.1 156 102-264 141-330 (533)
125 4adb_A Succinylornithine trans 99.9 3.7E-27 1.3E-31 235.1 19.8 291 94-439 76-396 (406)
126 2yrr_A Aminotransferase, class 99.9 1.1E-26 3.9E-31 226.5 22.7 285 99-439 33-349 (353)
127 3ffr_A Phosphoserine aminotran 99.9 2.2E-26 7.6E-31 225.4 24.8 284 99-440 43-361 (362)
128 3uwc_A Nucleotide-sugar aminot 99.9 1.2E-26 4.1E-31 228.9 22.7 312 97-443 36-371 (374)
129 3ke3_A Putative serine-pyruvat 99.9 1.2E-26 4.3E-31 229.6 22.4 309 83-439 20-372 (379)
130 2fnu_A Aminotransferase; prote 99.9 9.9E-26 3.4E-30 222.2 27.1 331 65-441 7-370 (375)
131 3d6k_A Putative aminotransfera 99.9 6.7E-26 2.3E-30 227.6 25.6 286 101-438 78-413 (422)
132 3asa_A LL-diaminopimelate amin 99.9 2.2E-26 7.5E-31 229.4 21.9 277 74-383 53-357 (400)
133 3fsl_A Aromatic-amino-acid ami 99.9 1.4E-25 4.8E-30 223.0 26.7 242 66-320 42-333 (397)
134 4f4e_A Aromatic-amino-acid ami 99.9 9.7E-26 3.3E-30 226.2 25.6 242 66-320 65-355 (420)
135 3ei9_A LL-diaminopimelate amin 99.9 1.7E-25 5.8E-30 225.2 26.8 279 74-383 76-392 (432)
136 2c0r_A PSAT, phosphoserine ami 99.9 6.9E-27 2.4E-31 229.7 16.0 312 65-440 11-358 (362)
137 2bkw_A Alanine-glyoxylate amin 99.9 2.8E-25 9.5E-30 219.6 27.6 288 100-439 39-380 (385)
138 2eh6_A Acoat, acetylornithine 99.9 8.8E-26 3E-30 222.7 23.7 279 98-439 69-374 (375)
139 3ju7_A Putative PLP-dependent 99.9 3.3E-25 1.1E-29 219.1 27.6 308 98-440 35-372 (377)
140 3dr4_A Putative perosamine syn 99.9 8.1E-25 2.8E-29 217.3 29.9 307 97-439 54-389 (391)
141 1mdo_A ARNB aminotransferase; 99.9 4.4E-25 1.5E-29 219.1 27.7 310 98-442 38-385 (393)
142 1ajs_A Aspartate aminotransfer 99.9 2.4E-25 8.3E-30 222.5 25.8 213 101-321 76-345 (412)
143 3meb_A Aspartate aminotransfer 99.9 1.1E-24 3.8E-29 220.4 30.2 218 101-321 96-372 (448)
144 3lws_A Aromatic amino acid bet 99.9 1.2E-25 4.1E-30 220.3 22.0 293 90-441 40-354 (357)
145 2pb2_A Acetylornithine/succiny 99.9 1.1E-25 3.8E-30 225.9 21.9 289 97-439 97-414 (420)
146 1v72_A Aldolase; PLP-dependent 99.9 1.7E-24 5.9E-29 211.6 29.8 278 97-440 41-350 (356)
147 2oga_A Transaminase; PLP-depen 99.9 5.1E-25 1.8E-29 219.5 26.3 300 98-441 62-394 (399)
148 3qm2_A Phosphoserine aminotran 99.9 2.9E-26 9.8E-31 226.3 16.3 317 63-441 32-383 (386)
149 2c81_A Glutamine-2-deoxy-scyll 99.9 1.4E-24 4.8E-29 217.6 28.8 312 98-443 41-414 (418)
150 3e77_A Phosphoserine aminotran 99.9 3.9E-26 1.3E-30 224.2 16.7 326 56-442 10-374 (377)
151 1o69_A Aminotransferase; struc 99.9 2.2E-24 7.6E-29 214.5 29.5 329 69-443 10-387 (394)
152 1z7d_A Ornithine aminotransfer 99.9 1.8E-25 6.2E-30 225.2 21.4 288 97-439 105-425 (433)
153 2oat_A Ornithine aminotransfer 99.9 1.8E-25 6.2E-30 225.6 21.4 288 97-439 116-435 (439)
154 1svv_A Threonine aldolase; str 99.9 2.1E-24 7E-29 211.2 27.3 289 91-440 41-355 (359)
155 2ord_A Acoat, acetylornithine 99.9 8.1E-26 2.8E-30 225.0 17.5 281 97-439 80-393 (397)
156 2q7w_A Aspartate aminotransfer 99.9 4.4E-25 1.5E-29 219.4 22.6 214 100-321 70-333 (396)
157 1vef_A Acetylornithine/acetyl- 99.9 1.5E-25 5E-30 222.9 18.9 284 97-439 85-393 (395)
158 2ay1_A Aroat, aromatic amino a 99.9 2.6E-25 8.7E-30 221.0 19.8 213 101-321 71-330 (394)
159 3bwn_A AT1G70560, L-tryptophan 99.9 4.4E-25 1.5E-29 219.4 20.8 286 102-439 71-383 (391)
160 2aeu_A Hypothetical protein MJ 99.9 7.4E-25 2.5E-29 216.5 21.3 162 102-274 61-233 (374)
161 1yaa_A Aspartate aminotransfer 99.9 2.5E-24 8.4E-29 215.3 24.9 214 101-321 75-345 (412)
162 1wyu_B Glycine dehydrogenase s 99.9 6E-25 2E-29 224.0 20.1 289 99-440 107-438 (474)
163 4eu1_A Mitochondrial aspartate 99.9 3.3E-24 1.1E-28 214.2 25.0 223 90-321 72-345 (409)
164 3hbx_A GAD 1, glutamate decarb 99.9 2.5E-24 8.6E-29 220.7 24.1 287 102-438 98-439 (502)
165 1w23_A Phosphoserine aminotran 99.9 1.6E-25 5.5E-30 219.5 14.2 278 99-440 48-357 (360)
166 3mad_A Sphingosine-1-phosphate 99.9 2.3E-24 7.7E-29 222.0 23.0 282 102-442 142-472 (514)
167 3ecd_A Serine hydroxymethyltra 99.9 9.2E-24 3.1E-28 211.6 26.7 326 66-439 41-393 (425)
168 1s0a_A Adenosylmethionine-8-am 99.9 1.7E-24 5.7E-29 217.8 21.2 290 97-440 84-421 (429)
169 3pj0_A LMO0305 protein; struct 99.9 2.2E-24 7.5E-29 211.4 21.5 290 97-441 46-357 (359)
170 3b8x_A WBDK, pyridoxamine 5-ph 99.9 2.5E-23 8.5E-28 206.5 29.2 302 98-436 33-389 (390)
171 3dxv_A Alpha-amino-epsilon-cap 99.9 1.4E-24 4.6E-29 219.1 20.1 290 93-438 80-420 (439)
172 2z67_A O-phosphoseryl-tRNA(SEC 99.9 4.6E-24 1.6E-28 216.3 24.1 324 63-439 86-454 (456)
173 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 2.2E-23 7.6E-28 210.2 28.7 310 98-440 61-433 (437)
174 3n0l_A Serine hydroxymethyltra 99.9 5E-24 1.7E-28 213.1 23.4 244 103-371 75-335 (417)
175 3b1d_A Betac-S lyase; HET: PLP 99.9 3.3E-27 1.1E-31 234.7 0.0 213 101-319 68-312 (392)
176 2dkj_A Serine hydroxymethyltra 99.9 3.8E-24 1.3E-28 213.2 21.4 287 104-438 74-387 (407)
177 3mc6_A Sphingosine-1-phosphate 99.9 6.3E-24 2.1E-28 217.7 23.2 282 102-441 110-439 (497)
178 2po3_A 4-dehydrase; external a 99.9 3.3E-23 1.1E-27 208.0 27.9 210 98-320 51-280 (424)
179 2a7v_A Serine hydroxymethyltra 99.9 5.4E-24 1.8E-28 216.0 22.2 291 63-383 60-396 (490)
180 1sff_A 4-aminobutyrate aminotr 99.9 9.9E-24 3.4E-28 211.7 23.9 292 96-439 81-420 (426)
181 2eo5_A 419AA long hypothetical 99.9 6.1E-24 2.1E-28 213.1 21.6 281 95-439 82-414 (419)
182 2zy4_A L-aspartate beta-decarb 99.9 1.6E-23 5.3E-28 216.5 25.2 150 115-269 166-338 (546)
183 2dgk_A GAD-beta, GADB, glutama 99.9 1E-23 3.5E-28 213.6 22.7 289 101-439 83-430 (452)
184 3m5u_A Phosphoserine aminotran 99.9 6E-24 2E-28 207.9 19.8 312 63-441 10-358 (361)
185 1rv3_A Serine hydroxymethyltra 99.9 4.3E-24 1.5E-28 218.0 18.7 323 63-439 50-427 (483)
186 3k7y_A Aspartate aminotransfer 99.9 3.7E-23 1.3E-27 206.0 24.9 221 91-321 66-340 (405)
187 3gbx_A Serine hydroxymethyltra 99.9 1.8E-23 6.1E-28 209.1 22.5 279 67-371 40-342 (420)
188 2fyf_A PSAT, phosphoserine ami 99.9 2.2E-23 7.4E-28 207.6 22.3 289 99-440 78-395 (398)
189 2ez2_A Beta-tyrosinase, tyrosi 99.9 6.8E-23 2.3E-27 207.6 25.3 296 97-439 73-427 (456)
190 4a6r_A Omega transaminase; tra 99.9 1.3E-22 4.3E-27 206.0 26.9 221 93-317 88-360 (459)
191 3h7f_A Serine hydroxymethyltra 99.9 2.2E-23 7.4E-28 210.9 20.8 253 65-325 53-331 (447)
192 3tfu_A Adenosylmethionine-8-am 99.9 4.1E-24 1.4E-28 216.7 15.4 294 93-439 112-449 (457)
193 2vi8_A Serine hydroxymethyltra 99.9 2.7E-23 9.2E-28 207.0 21.0 287 104-439 74-383 (405)
194 3i4j_A Aminotransferase, class 99.9 7E-23 2.4E-27 206.0 23.9 295 95-439 68-424 (430)
195 3gju_A Putative aminotransfera 99.9 1.2E-22 4.1E-27 206.2 25.8 175 94-271 90-314 (460)
196 1zod_A DGD, 2,2-dialkylglycine 99.9 3.8E-23 1.3E-27 208.0 22.0 292 96-439 82-428 (433)
197 3l44_A Glutamate-1-semialdehyd 99.9 3.8E-23 1.3E-27 208.2 20.5 219 96-319 92-342 (434)
198 1ax4_A Tryptophanase; tryptoph 99.9 1.6E-22 5.6E-27 205.4 25.2 298 98-439 75-437 (467)
199 3a8u_X Omega-amino acid--pyruv 99.9 9E-23 3.1E-27 206.4 23.1 291 95-439 89-443 (449)
200 4ffc_A 4-aminobutyrate aminotr 99.9 3.2E-22 1.1E-26 202.6 25.2 293 93-438 101-444 (453)
201 3i5t_A Aminotransferase; pyrid 99.9 6.7E-23 2.3E-27 208.8 20.2 294 95-442 93-457 (476)
202 3hmu_A Aminotransferase, class 99.9 7.8E-23 2.7E-27 208.0 20.6 257 93-371 93-413 (472)
203 3oks_A 4-aminobutyrate transam 99.9 6E-22 2.1E-26 200.5 26.1 292 93-439 98-447 (451)
204 2epj_A Glutamate-1-semialdehyd 99.9 2.6E-23 9E-28 209.4 15.9 251 97-371 94-393 (434)
205 2hox_A ALLIIN lyase 1; cystein 99.9 6.7E-23 2.3E-27 206.0 18.0 204 101-320 102-336 (427)
206 3k28_A Glutamate-1-semialdehyd 99.9 1.3E-22 4.5E-27 204.0 19.6 218 96-320 90-340 (429)
207 2x3l_A ORN/Lys/Arg decarboxyla 99.9 9.8E-23 3.4E-27 205.9 18.6 159 96-267 54-230 (446)
208 3n5m_A Adenosylmethionine-8-am 99.9 7.6E-22 2.6E-26 199.8 25.0 294 95-439 87-448 (452)
209 3vp6_A Glutamate decarboxylase 99.9 5.5E-22 1.9E-26 203.7 24.2 294 97-441 129-503 (511)
210 3dod_A Adenosylmethionine-8-am 99.9 3E-22 1E-26 202.6 20.9 219 95-319 83-357 (448)
211 2cjg_A L-lysine-epsilon aminot 99.9 1.5E-22 5.1E-27 204.8 18.4 287 95-439 97-444 (449)
212 4e77_A Glutamate-1-semialdehyd 99.9 1.5E-22 5E-27 203.6 18.1 251 97-371 91-391 (429)
213 1js3_A DDC;, DOPA decarboxylas 99.9 9.3E-22 3.2E-26 201.0 24.2 242 103-371 117-429 (486)
214 2jis_A Cysteine sulfinic acid 99.9 1.6E-21 5.5E-26 200.7 25.0 223 100-327 149-428 (515)
215 2cy8_A D-phgat, D-phenylglycin 99.9 2.5E-22 8.4E-27 203.5 18.5 236 97-358 95-367 (453)
216 2oqx_A Tryptophanase; lyase, p 99.9 8.7E-22 3E-26 200.0 22.3 317 71-439 53-438 (467)
217 3fq8_A Glutamate-1-semialdehyd 99.9 8.8E-23 3E-27 205.1 14.7 218 97-319 90-339 (427)
218 2okj_A Glutamate decarboxylase 99.9 1.2E-21 4.1E-26 201.1 23.4 292 102-441 135-500 (504)
219 2qma_A Diaminobutyrate-pyruvat 99.9 2.1E-21 7.1E-26 199.0 22.9 284 104-440 145-493 (497)
220 1c4k_A Protein (ornithine deca 99.9 3.7E-21 1.3E-25 203.6 25.2 219 98-327 172-447 (730)
221 3k40_A Aromatic-L-amino-acid d 99.9 4.5E-21 1.5E-25 195.2 24.2 292 97-440 107-468 (475)
222 2e7u_A Glutamate-1-semialdehyd 99.9 4E-22 1.4E-26 200.2 16.1 252 96-371 89-389 (424)
223 4e1o_A HDC, histidine decarbox 99.9 6.1E-21 2.1E-25 194.6 24.5 292 97-440 112-475 (481)
224 1wyu_A Glycine dehydrogenase ( 99.9 4.1E-21 1.4E-25 193.7 22.0 282 99-439 108-436 (438)
225 2yky_A Beta-transaminase; tran 99.8 8.3E-24 2.9E-28 213.4 0.0 243 96-358 137-398 (465)
226 2vyc_A Biodegradative arginine 99.9 3.1E-20 1.1E-24 198.1 23.2 211 98-320 204-464 (755)
227 4h51_A Aspartate aminotransfer 99.8 3E-20 1E-24 185.3 20.0 243 66-322 60-353 (420)
228 1ohv_A 4-aminobutyrate aminotr 99.8 2.8E-20 9.4E-25 189.3 15.6 281 100-440 111-468 (472)
229 4ao9_A Beta-phenylalanine amin 99.8 7.2E-19 2.5E-23 176.2 13.8 217 99-320 127-361 (454)
230 3n75_A LDC, lysine decarboxyla 99.8 1E-17 3.6E-22 175.8 18.3 211 97-320 193-442 (715)
231 4atq_A 4-aminobutyrate transam 99.7 1E-16 3.5E-21 161.2 22.0 254 98-371 106-413 (456)
232 4e3q_A Pyruvate transaminase; 99.7 4.6E-16 1.6E-20 157.1 26.0 289 98-440 110-469 (473)
233 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 7.4E-15 2.5E-19 144.1 22.6 193 116-320 136-355 (501)
234 3ou5_A Serine hydroxymethyltra 99.7 6E-15 2.1E-19 144.0 21.4 286 61-371 58-391 (490)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.6 1.7E-14 5.8E-19 143.2 21.7 209 102-321 101-338 (450)
236 4a0g_A Adenosylmethionine-8-am 99.6 3.9E-15 1.3E-19 160.0 15.7 289 97-440 422-825 (831)
237 1tks_A 3,4-dihydroxy-2-butanon 71.2 7.1 0.00024 33.7 5.8 38 184-221 157-194 (204)
238 1qyd_A Pinoresinol-lariciresin 55.3 79 0.0027 28.4 10.5 98 116-218 6-110 (313)
239 3mio_A DHBP synthase, 3,4-dihy 54.9 25 0.00084 30.3 6.2 38 184-221 156-194 (206)
240 1snn_A DHBP synthase, 3,4-dihy 51.8 24 0.00083 30.9 5.7 37 184-221 176-212 (227)
241 1g57_A DHBP synthase, 3,4-dihy 50.6 33 0.0011 29.8 6.4 36 185-221 166-201 (217)
242 3ic5_A Putative saccharopine d 49.2 77 0.0026 23.4 9.5 90 116-220 7-97 (118)
243 2yxb_A Coenzyme B12-dependent 48.7 46 0.0016 27.3 6.9 61 153-216 36-97 (161)
244 1vb5_A Translation initiation 40.9 1E+02 0.0035 27.8 8.5 106 107-221 102-216 (276)
245 2xhz_A KDSD, YRBH, arabinose 5 40.7 1.4E+02 0.0048 24.3 9.0 37 184-224 95-133 (183)
246 2r6j_A Eugenol synthase 1; phe 39.9 86 0.003 28.3 8.1 96 116-220 13-111 (318)
247 4gqr_A Pancreatic alpha-amylas 37.3 16 0.00056 35.7 2.7 85 137-225 8-99 (496)
248 3ecs_A Translation initiation 36.6 2.1E+02 0.0072 26.3 9.9 101 114-222 121-229 (315)
249 2zcu_A Uncharacterized oxidore 35.9 1.4E+02 0.0049 26.1 8.8 92 117-217 2-96 (286)
250 1vhx_A Putative holliday junct 35.7 63 0.0022 26.2 5.6 54 174-227 43-102 (150)
251 1k4i_A 3,4-dihydroxy-2-butanon 35.3 57 0.0019 28.6 5.4 37 184-221 165-212 (233)
252 1t9k_A Probable methylthioribo 35.2 1.8E+02 0.006 27.3 9.3 89 129-222 171-267 (347)
253 1iv0_A Hypothetical protein; r 34.2 71 0.0024 23.8 5.2 52 174-225 39-95 (98)
254 1qyc_A Phenylcoumaran benzylic 34.1 1.4E+02 0.0048 26.6 8.5 95 116-218 6-107 (308)
255 3i6i_A Putative leucoanthocyan 33.7 2.2E+02 0.0075 25.9 10.0 103 116-225 12-120 (346)
256 3sho_A Transcriptional regulat 33.5 1.2E+02 0.0041 24.9 7.4 37 184-224 86-124 (187)
257 3io5_A Recombination and repai 32.4 3.1E+02 0.01 25.4 10.4 82 138-221 58-167 (333)
258 3c1o_A Eugenol synthase; pheny 32.3 1.5E+02 0.005 26.7 8.4 98 116-221 6-110 (321)
259 1y80_A Predicted cobalamin bin 31.3 1.1E+02 0.0036 26.1 6.7 67 153-222 106-177 (210)
260 3umo_A 6-phosphofructokinase i 30.8 2.1E+02 0.0073 25.5 9.2 19 205-223 149-167 (309)
261 2jl1_A Triphenylmethane reduct 30.7 2.1E+02 0.0072 25.0 9.0 92 117-217 3-99 (287)
262 2ioj_A Hypothetical protein AF 30.6 90 0.0031 24.6 5.7 48 167-221 55-103 (139)
263 1g94_A Alpha-amylase; beta-alp 30.5 22 0.00075 34.7 2.3 32 194-225 56-87 (448)
264 4h1h_A LMO1638 protein; MCCF-l 30.2 91 0.0031 28.9 6.4 68 135-203 9-95 (327)
265 3dr5_A Putative O-methyltransf 29.9 2.6E+02 0.0088 23.8 12.3 119 98-225 38-165 (221)
266 3gi1_A LBP, laminin-binding pr 29.6 3.1E+02 0.011 24.6 10.0 70 137-221 178-256 (286)
267 1xrs_B D-lysine 5,6-aminomutas 29.4 3E+02 0.01 24.5 10.2 105 119-224 101-223 (262)
268 3ezx_A MMCP 1, monomethylamine 29.1 2.2E+02 0.0074 24.4 8.3 75 139-216 93-173 (215)
269 3dm5_A SRP54, signal recogniti 28.9 4E+02 0.014 25.7 11.0 93 132-225 122-224 (443)
270 3kts_A Glycerol uptake operon 27.8 84 0.0029 26.7 5.2 81 173-271 17-99 (192)
271 3bh4_A Alpha-amylase; calcium, 27.8 32 0.0011 33.8 3.0 32 195-226 71-102 (483)
272 3tnl_A Shikimate dehydrogenase 27.6 2.6E+02 0.009 25.6 9.1 19 164-182 206-224 (315)
273 3bzy_B ESCU; auto cleavage pro 27.0 37 0.0013 24.6 2.4 20 205-224 29-48 (83)
274 1ud2_A Amylase, alpha-amylase; 26.9 35 0.0012 33.6 3.1 32 195-226 73-104 (480)
275 1mxg_A Alpha amylase; hyperthe 26.8 39 0.0013 32.8 3.4 32 196-227 80-111 (435)
276 1wpc_A Glucan 1,4-alpha-maltoh 26.7 35 0.0012 33.6 3.1 32 195-226 75-106 (485)
277 3v7e_A Ribosome-associated pro 26.6 82 0.0028 22.4 4.3 46 175-224 16-61 (82)
278 1hvx_A Alpha-amylase; hydrolas 26.5 35 0.0012 33.9 3.1 32 195-226 74-105 (515)
279 3tla_A MCCF; serine protease, 26.3 1.2E+02 0.0042 28.6 6.6 68 135-203 40-126 (371)
280 1gcy_A Glucan 1,4-alpha-maltot 26.2 40 0.0014 33.7 3.4 30 197-226 87-116 (527)
281 1lwj_A 4-alpha-glucanotransfer 25.5 36 0.0012 33.0 2.9 30 196-225 63-92 (441)
282 3ruf_A WBGU; rossmann fold, UD 25.4 3.7E+02 0.013 24.2 10.9 78 113-193 24-107 (351)
283 3nzo_A UDP-N-acetylglucosamine 25.1 4.3E+02 0.015 24.7 13.5 112 105-217 26-157 (399)
284 3enk_A UDP-glucose 4-epimerase 24.6 1.6E+02 0.0056 26.6 7.2 78 116-194 7-86 (341)
285 4aie_A Glucan 1,6-alpha-glucos 24.6 35 0.0012 34.0 2.6 29 197-225 74-102 (549)
286 3l77_A Short-chain alcohol deh 24.5 3.2E+02 0.011 23.0 9.1 76 117-194 5-88 (235)
287 1wza_A Alpha-amylase A; hydrol 24.5 42 0.0014 33.0 3.2 28 198-225 77-104 (488)
288 2dh2_A 4F2 cell-surface antige 24.4 43 0.0015 32.3 3.2 33 195-227 74-106 (424)
289 2gas_A Isoflavone reductase; N 24.4 2.5E+02 0.0085 24.8 8.4 51 163-218 55-106 (307)
290 2guy_A Alpha-amylase A; (beta- 23.7 42 0.0014 32.9 2.9 31 196-226 91-121 (478)
291 1ht6_A AMY1, alpha-amylase iso 23.4 43 0.0015 32.1 2.9 31 197-227 63-93 (405)
292 3e48_A Putative nucleoside-dip 22.9 1.5E+02 0.0051 26.2 6.4 92 117-217 3-98 (289)
293 1m3s_A Hypothetical protein YC 22.7 3.1E+02 0.011 22.2 8.5 36 184-223 78-115 (186)
294 3sr3_A Microcin immunity prote 22.5 1.5E+02 0.0051 27.5 6.4 68 135-203 10-96 (336)
295 2yvq_A Carbamoyl-phosphate syn 22.4 2.4E+02 0.0081 22.3 6.8 81 132-222 44-131 (143)
296 1jae_A Alpha-amylase; glycosid 22.2 31 0.0011 33.8 1.7 85 138-226 9-98 (471)
297 2ya0_A Putative alkaline amylo 21.7 41 0.0014 35.1 2.5 31 197-227 249-279 (714)
298 1pq4_A Periplasmic binding pro 21.7 4.4E+02 0.015 23.6 10.7 69 137-220 189-264 (291)
299 2vt1_B Surface presentation of 21.6 53 0.0018 24.3 2.4 20 205-224 29-48 (93)
300 1ccw_A Protein (glutamate muta 21.5 1.1E+02 0.0038 24.1 4.6 60 154-216 22-82 (137)
301 1ea9_C Cyclomaltodextrinase; h 21.4 53 0.0018 33.3 3.2 32 197-228 213-244 (583)
302 3qvo_A NMRA family protein; st 21.2 2.6E+02 0.009 23.7 7.5 91 115-216 24-116 (236)
303 3mwd_B ATP-citrate synthase; A 21.0 1.6E+02 0.0054 27.4 6.1 76 145-225 64-140 (334)
304 2z1k_A (NEO)pullulanase; hydro 21.0 46 0.0016 32.5 2.6 29 198-226 92-120 (475)
305 4e5s_A MCCFLIKE protein (BA_56 21.0 1.4E+02 0.0047 27.8 5.7 68 135-203 9-95 (331)
306 1zja_A Trehalulose synthase; s 21.0 50 0.0017 33.2 2.9 31 196-226 73-103 (557)
307 3ghf_A Septum site-determining 20.9 2.9E+02 0.0098 21.2 7.6 54 163-220 15-78 (120)
308 2aaa_A Alpha-amylase; glycosid 20.9 44 0.0015 32.9 2.4 32 195-226 90-121 (484)
309 3t7y_A YOP proteins translocat 20.8 49 0.0017 24.7 2.1 20 205-224 44-63 (97)
310 1j0h_A Neopullulanase; beta-al 20.7 50 0.0017 33.5 2.9 33 196-228 216-248 (588)
311 3dhu_A Alpha-amylase; structur 20.6 42 0.0014 32.6 2.2 27 199-225 80-106 (449)
312 2o1e_A YCDH; alpha-beta protei 20.6 2.8E+02 0.0095 25.3 7.8 69 137-220 189-266 (312)
313 2i2x_B MTAC, methyltransferase 20.6 3.1E+02 0.011 24.1 7.9 76 138-216 123-202 (258)
314 3ikh_A Carbohydrate kinase; tr 20.4 4.5E+02 0.015 23.3 11.7 48 174-225 118-166 (299)
315 2wc7_A Alpha amylase, catalyti 20.2 44 0.0015 32.9 2.3 29 197-225 97-125 (488)
316 2abq_A Fructose 1-phosphate ki 20.2 4.4E+02 0.015 23.4 9.1 37 186-223 125-162 (306)
No 1
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.4e-56 Score=449.37 Aligned_cols=382 Identities=29% Similarity=0.447 Sum_probs=340.8
Q ss_pred CCCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
..+.+.|+++|+....+.+|++++||+.++||.+++.+++.+.+.+. .+.|.|+|+.++..+++++++|+++|.+.
T Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~l~~~la~~~g~~~ 98 (414)
T 3ndn_A 23 DGVSQATVGVRGGMLRSGFEETAEAMYLTSGYVYGSAAVAEKSFAGE----LDHYVYSRYGNPTVSVFEERLRLIEGAPA 98 (414)
T ss_dssp TTCCHHHHHHHTTCCCCTTCBSSCCBCCCSBBCCSSHHHHHHHHTTS----SCCCCBTTTCCHHHHHHHHHHHHHHTCSE
T ss_pred CCCCccceeeecCCCCCCCCCcCCCcccCCceecCChHHHHHHHhCC----cCCcCcCCCCChHHHHHHHHHHHHHCCCc
Confidence 34678999999655556789999999999999999998777776543 55799999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
+++++||++|+.+++++++++||+|+++.+.|+++...+...+.+ .|.++.+++.+|+++|++++ +++|++|++++|+
T Consensus 99 ~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~ai-~~~t~~v~le~p~ 176 (414)
T 3ndn_A 99 AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL-SVPTQAVFFETPS 176 (414)
T ss_dssp EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHT-SSCCSEEEEESSC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CCCCeEEEEECCC
Confidence 999999999999999999999999999999999998887554444 79999999999999999999 7789999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhh
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQ 274 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~ 274 (447)
||+|.+.|+++|+++|+++|+++|+|++|+ +....+..+|+|+++.|+||+++++|..++|+++++++.+. .++....
T Consensus 177 NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~ 256 (414)
T 3ndn_A 177 NPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR 256 (414)
T ss_dssp TTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHH
Confidence 999999999999999999999999999994 44456777899999999999999988545699999988775 5655444
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
..|..+++..++.+++.++++..+++++.++++++.++|++++. .+.+|+++++|+|++++++++ |.|+++
T Consensus 257 ----~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g~G~~l 329 (414)
T 3ndn_A 257 ----HTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMS---GGGTVV 329 (414)
T ss_dssp ----HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEE
T ss_pred ----HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCC---CCceEE
Confidence 45777788888888888999999999999999999999999875 789999999999999999886 789999
Q ss_pred EEEeCC-----HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 353 CLDMET-----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 353 ~~~l~~-----~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
+|++++ .+.+.+|++.|+. ++ +++|+|+.+|++++|++++|..++++++.++|+.+++||||+| .|++++
T Consensus 330 ~~~l~~~~~~~~~~~~~~~~~l~~---~~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG-~e~~~d 404 (414)
T 3ndn_A 330 TFALDCPEDVAKQRAFEVLDKMRL---ID-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG-LEDTDD 404 (414)
T ss_dssp EEEECSCGGGHHHHHHHHHHHCSS---SE-ECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC-SSCHHH
T ss_pred EEEEcCCccccHHHHHHHHHhCcc---ce-EcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHH
Confidence 999975 6678899999987 34 7999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHH
Q 013210 428 RWSQFEKAL 436 (447)
Q Consensus 428 ~i~~l~~al 436 (447)
++++|.+||
T Consensus 405 li~dl~~al 413 (414)
T 3ndn_A 405 LIADIDRAL 413 (414)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999998
No 2
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=100.00 E-value=4.8e-57 Score=453.84 Aligned_cols=380 Identities=29% Similarity=0.454 Sum_probs=291.9
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.|+++|+. .....+|++++|||.++||.+++.+++.+.+.+. ...|.|+|+.+|..+++++++|+++|.+.++
T Consensus 26 ~~~t~~~h~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v 101 (430)
T 3ri6_A 26 GFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGR----ALGHVYSRSSNPTVEDLEQRLKNLTGALGVL 101 (430)
T ss_dssp CHHHHHHCCC------------------------------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcchhheeCCCCCCCCCCCcCCCcccccccccCCHHHHHHHhhcc----cCCccccCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3788898865 3445689999999999999999987776665443 4579999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+.+++++++++||+|+++.+.|+++...+...+.. .|+++++++.+|+++|++++ +++|++|++++|+||
T Consensus 102 ~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~~~~v~~~d~~~l~~ai-~~~t~~v~~e~p~Np 179 (430)
T 3ri6_A 102 ALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS-FGIEVRFVDVMDSLAVEHAC-DETTKLLFLETISNP 179 (430)
T ss_dssp EESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTT
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhh-CCCCeEEEEECCCCC
Confidence 9999999999999999999999999999999998876544444 79999999999999999999 789999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEE--cChHH----------
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC--GPANL---------- 265 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~--~~~~~---------- 265 (447)
+|.+.|+++|+++|+++|+++|+|++| .+..+++..+|+|++++|+||+++++|..+||+++ .+..+
T Consensus 180 tG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~ 259 (430)
T 3ri6_A 180 QLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYY 259 (430)
T ss_dssp TCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHH
T ss_pred CCeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhh
Confidence 999999999999999999999999999 55557888889999999999999999988889988 33222
Q ss_pred --------HHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchh
Q 013210 266 --------VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHH 335 (447)
Q Consensus 266 --------~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~ 335 (447)
+..++. ......|..+++..+++++++++++..+++++.+++.++.++|++++. +|.+|+++++|+|
T Consensus 260 ~~~g~~~~i~~~~~---~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~ 336 (430)
T 3ri6_A 260 AKAGPMAFLYKARK---EVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFY 336 (430)
T ss_dssp HHHGGGHHHHHHHH---THHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTH
T ss_pred hhhchhhHHHHHHH---HHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccH
Confidence 222221 112256778889999998889999999999999999999999998865 7999999999999
Q ss_pred HHHHHHhccCCCcCc-EEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCe
Q 013210 336 ELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 414 (447)
Q Consensus 336 ~l~~~~~~~~~g~g~-~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~ 414 (447)
+++++++ |+|+ +++|++++.+.+.+|++.++.. + +++|+|+.+|++++|++++|..++++++.+.|+.+++
T Consensus 337 ~~~~~~~----g~Gg~~lsf~l~~~~~~~~~~~~l~~~---~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~l 408 (430)
T 3ri6_A 337 AIAKRQF----RYAGSILTFELESKEASYRFMDALKLI---R-RATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAM 408 (430)
T ss_dssp HHHHHHC----SSCCSEEEEECSSHHHHHHHHHHCSSS---E-ECSCCSCSSCEEECTGGGC---------CGGGSCTTE
T ss_pred HHHHHhC----CCCceEEEEEECCHHHHHHHHHhCCcc---e-ecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCe
Confidence 9999987 6888 9999999878899999999973 3 7999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Q 013210 415 VRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 415 iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
||||+| .|++++++++|.+||+
T Consensus 409 iRlsvG-~E~~~dl~~dl~~al~ 430 (430)
T 3ri6_A 409 MRLSVG-IEEIEDLKEDILQALC 430 (430)
T ss_dssp EEEECC-SSCHHHHHHHHHHHHC
T ss_pred EEEEec-cCCHHHHHHHHHHhhC
Confidence 999999 9999999999999983
No 3
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=100.00 E-value=9.8e-55 Score=438.31 Aligned_cols=386 Identities=29% Similarity=0.495 Sum_probs=339.2
Q ss_pred CCCCch-hhHhhhcCCC-C--CCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHH
Q 013210 36 AAWEDP-AAALASARHE-F--GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111 (447)
Q Consensus 36 ~~~~~~-~~~~~~~~~~-~--~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l 111 (447)
.+++.| .|+++|+... . ..++++.+|||.++||.+++.+++.+.+... .+.|.|+|+.++..+++|++||++
T Consensus 51 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~~~~~~l~~~lA~l 126 (445)
T 1qgn_A 51 ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKR----RASFEYGRYGNPTTVVLEEKISAL 126 (445)
T ss_dssp CTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTS----SCCCCBGGGCCHHHHHHHHHHHHH
T ss_pred cccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccc----cCCccccCCCChHHHHHHHHHHHH
Confidence 455677 8888885443 3 4589999999999999999988777776553 457999999999999999999999
Q ss_pred hCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCc-eEE
Q 013210 112 EGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRT-KVL 190 (447)
Q Consensus 112 ~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t-~lV 190 (447)
+|++..++++||++|+++++++++++||+|+++.+.|+++...+...+.+ .|+++++++.+|+++|++++ +++| ++|
T Consensus 127 ~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tv~lV 204 (445)
T 1qgn_A 127 EGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELAL-NQKKVNLF 204 (445)
T ss_dssp HTCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECSSCHHHHHHHH-HHSCEEEE
T ss_pred hCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCCCCEE
Confidence 99988899999999999999999999999999999999988876544555 79999999999999999999 6788 999
Q ss_pred EEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHH
Q 013210 191 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 269 (447)
Q Consensus 191 ~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l 269 (447)
++++|+||+|.+.|+++|+++|+++|+++|+|++| .+....+..+++|++++|+||++|++|+..+|++++++++++.+
T Consensus 205 ~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l 284 (445)
T 1qgn_A 205 FTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEI 284 (445)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHH
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHH
Confidence 99999999999999999999999999999999999 45556677789999999999999988864459999999998888
Q ss_pred HHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCC
Q 013210 270 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
...+. ..|..+++..++.+++.++++..+++++.++++++.++|++++. .+.+|+++++|+|++++++++ |
T Consensus 285 ~~~~~----~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g 357 (445)
T 1qgn_A 285 RNLHH----ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---G 357 (445)
T ss_dssp HHHHH----HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCS---C
T ss_pred HHHHH----HhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhcc---C
Confidence 76554 56777778777877888899999999999999999999999865 688999999999999999876 6
Q ss_pred cCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013210 348 FGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 426 (447)
Q Consensus 348 ~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~ 426 (447)
.|++++|.+++ .+.+..+++.|+. |+ +++|+|++|+++.+|+..+|..++++++.++|+++++||||+| .++++
T Consensus 358 ~g~ivsf~l~~~~~~~~~~l~~l~~---~~-i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG-~Edid 432 (445)
T 1qgn_A 358 FGGAVSFEVDGDLLTTAKFVDALKI---PY-IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-VEDFD 432 (445)
T ss_dssp CCSEEEEEESSCHHHHHHHHHHCSS---SE-ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-SSCHH
T ss_pred CCcEEEEEECCCHHHHHHHHHhCCC---ce-EeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec-cCCHH
Confidence 89999999985 3558889999885 33 7999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHh
Q 013210 427 QRWSQFEKALSRM 439 (447)
Q Consensus 427 ~~i~~l~~al~~~ 439 (447)
+++++|.++|+++
T Consensus 433 ~li~~L~~al~~~ 445 (445)
T 1qgn_A 433 DLKADILQALDSI 445 (445)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999753
No 4
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=100.00 E-value=1.4e-54 Score=432.80 Aligned_cols=372 Identities=35% Similarity=0.554 Sum_probs=330.6
Q ss_pred CchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+++.|+++|+. .....+|++++|||.++||.+++.+. ...|.|+|+.+|...+++++||+++|.+.+
T Consensus 18 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~------------~~~~~y~r~~~p~~~~l~~~la~l~g~~~~ 85 (400)
T 3nmy_A 18 LSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGE------------HQGFEYSRTHNPTRFAYERCVAALEGGTRA 85 (400)
T ss_dssp CCHHHHHHHTTCCCCTTTCBSSCCBCCCSBBBCSBTTB------------SSSCCBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred CCcchheeeCCCCCCCCCCCcCCCccccceeeccCccc------------cCCcccccCCCHHHHHHHHHHHHHhCCCCE
Confidence 56888898854 44456899999999999999987531 246899999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhh-cCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~-~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
++++||++|+.+ +..++++||+|+++.+.|+++...+... +.+ .|+++.+++.+|+++|++++ ++++++|++++|+
T Consensus 86 ~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e~~~ 162 (400)
T 3nmy_A 86 FAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT-AGLDFSFVDLTDPAAFKAAI-RADTKMVWIETPT 162 (400)
T ss_dssp EEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHH-HCCEEEEECTTSHHHHHHHC-CTTEEEEEEESSC
T ss_pred EEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhh-cCeEEEEECCCCHHHHHHHh-ccCCCEEEEECCC
Confidence 999999999998 5678899999999999999888777544 444 69999999999999999999 7899999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEE-EEE-cChHHHHHHHHHh
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAG-AVC-GPANLVNSMMDLH 273 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG-~l~-~~~~~~~~l~~~~ 273 (447)
||+|.+.|+++|+++|++||+++|+|++|+ +....+..+|+|++++|+||+++++|.++|| +++ .++++++.+...+
T Consensus 163 np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~ 242 (400)
T 3nmy_A 163 NPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQ 242 (400)
T ss_dssp TTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHH
T ss_pred CCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHH
Confidence 999999999999999999999999999994 4455777889999999999999999988888 554 5778888887766
Q ss_pred hhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013210 274 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL 351 (447)
Q Consensus 274 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~ 351 (447)
. ..|..+++..++.+++.++++..+++++.+++..+.++|++++. .+.+|+++++|+|++++++++ |.|++
T Consensus 243 ~----~~g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~---g~G~~ 315 (400)
T 3nmy_A 243 N----SIGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS---GFGGI 315 (400)
T ss_dssp H----HHCCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSE
T ss_pred H----hcCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CCCce
Confidence 5 56777888888888888999999999999999999999998876 789999999999999999986 78999
Q ss_pred EEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013210 352 LCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 430 (447)
Q Consensus 352 ~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~ 430 (447)
++|++++ .+.+.+|++.++.. + +++|+|+.+|++++|+..+|..++++++.++|+++++||+|+| .|+++++++
T Consensus 316 ~~~~l~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-le~~~dli~ 390 (400)
T 3nmy_A 316 VSIVLKGGFDAAKRFCEKTELF---T-LAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVG-IEDLGDLRG 390 (400)
T ss_dssp EEEEETTHHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHcCCcc---e-EecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHHHHH
Confidence 9999985 35678899999873 3 7999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHH
Q 013210 431 QFEKALS 437 (447)
Q Consensus 431 ~l~~al~ 437 (447)
+|.+||+
T Consensus 391 dl~~al~ 397 (400)
T 3nmy_A 391 DLERALV 397 (400)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999997
No 5
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=100.00 E-value=7.8e-55 Score=436.31 Aligned_cols=379 Identities=21% Similarity=0.358 Sum_probs=327.3
Q ss_pred chhhHhhhcCCC-CCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASARHE-FGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~~~-~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
.+.|+++|+... ...+|++++|||.++||.+++.+++.+.+.+.. ...|.|+|+.+|.++++|+++|+++|++.++
T Consensus 25 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~---~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i 101 (415)
T 2fq6_A 25 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRA---NGELFYGRRGTLTHFSLQQAMCELEGGAGCV 101 (415)
T ss_dssp CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTT---TTSCCCTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcCceeEeCCCCCCCCCCCEeCCeecccceeeCCHHHHHHhhcccc---CCCccccCCCCchHHHHHHHHHHHhCCCeEE
Confidence 477888886543 345799999999999999999988888876541 2469999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+++++++++++||+|+++.++|+++...+...+.+ .|+++++++.+|+++|++++ +++|++|++++|+||
T Consensus 102 ~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~d~~~le~ai-~~~tklV~~e~~~Np 179 (415)
T 2fq6_A 102 LFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFDPLIGADIVKHL-QPNTKIVFLESPGSI 179 (415)
T ss_dssp EESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECTTCGGGGGGGC-CTTEEEEEEESSCTT
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhh-ccCCcEEEEECCCCC
Confidence 9999999999999999999999999999999998888655555 79999999999999999999 788999999999999
Q ss_pred CccccCHHHHHHHHHh--cCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh
Q 013210 199 TLAVANIPELSRLAHD--KGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 275 (447)
Q Consensus 199 tG~v~~l~~I~~la~~--~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~ 275 (447)
+|.++|+++|+++|++ +|+++|+|++|+ ++...+..+++|++++|+||+++++|++++|++++++++++.+...+.
T Consensus 180 tG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~- 258 (415)
T 2fq6_A 180 TMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY- 258 (415)
T ss_dssp TCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH-
T ss_pred CCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHH-
Confidence 9999999999999999 999999999994 455667778999999999999999998777999998888887776554
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..++.+++.++++..+++++.+++..++++|++++. .+.+|+++.+|++++++++++ +.|++++
T Consensus 259 ---~~G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---~~g~i~s 332 (415)
T 2fq6_A 259 ---LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSGLFS 332 (415)
T ss_dssp ---HTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCSEEE
T ss_pred ---hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEE
Confidence 45667778777777777788888999999999999999999865 678999999999999998764 6789999
Q ss_pred EEeCC---HHHHHHHHHHhhcccccccccccccCccccccc--cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 354 LDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC--SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 354 ~~l~~---~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~--~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
|.+++ .+.+..|++.|+. ++ +++|+|++||++.+ |+..++... ..++|++++.||||+| .++++++
T Consensus 333 f~l~g~~~~~~~~~~l~~l~~---~~-~a~s~G~~~s~~~~~~p~~~s~~~~----~~~~g~~~~~iRlS~G-~e~~~d~ 403 (415)
T 2fq6_A 333 FVLKKKLNNEELANYLDNFSL---FS-MAYSWGGYESLILANQPEHIAAIRP----QGEIDFSGTLIRLHIG-LEDVDDL 403 (415)
T ss_dssp EEESSCCCHHHHHHHHTTCSS---CE-ECSCCCSSSCEEEEECHHHHHTTCT----TCCCCCCSCEEEEECC-SSCHHHH
T ss_pred EEECCCCCHHHHHHHHHhCCc---Ce-EeccCCCCceeEEecCCCccccccc----hhhcCCCCCEEEEEec-CCCHHHH
Confidence 99986 5678999999886 33 79999999999987 766553211 0246888899999999 9999999
Q ss_pred HHHHHHHHHHh
Q 013210 429 WSQFEKALSRM 439 (447)
Q Consensus 429 i~~l~~al~~~ 439 (447)
|++|.++|+++
T Consensus 404 i~~l~~al~~~ 414 (415)
T 2fq6_A 404 IADLDAGFARI 414 (415)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 6
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=100.00 E-value=1.4e-52 Score=418.06 Aligned_cols=370 Identities=32% Similarity=0.459 Sum_probs=326.3
Q ss_pred CchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+.+.|+++|+. .....++++.+||+.++||.+++.+ ++.+.|.|+|+.++.+++++++||+++|.+.+
T Consensus 16 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~-----------~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~ 84 (392)
T 3qhx_A 16 AGLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVG-----------GLRGGYEYARTGNPTRTALEAALAAVEDAAFG 84 (392)
T ss_dssp CCHHHHHHHSSCCCCTTTCBSSCCBCCCSBBCCSSTT-----------CCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEE
T ss_pred CCcchhheeCCCCCCCCCCCccCCcccCcceEecCcc-----------cccCCccccCCCChHHHHHHHHHHHHhCCCcE
Confidence 37889999854 4445689999999999999987642 23457999999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++|+||++|+++++++++++||+|+++.++|+++...+...... .|+++.+++.+|+++|++++ ++++++|++++|+|
T Consensus 85 ~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~n 162 (392)
T 3qhx_A 85 RAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTG-WNVEYTPVALADLDAVRAAI-RPTTRLIWVETPTN 162 (392)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHh-cCcEEEEeCCCCHHHHHHhh-CCCCeEEEEECCCC
Confidence 99999999999999999999999999999999998887555555 79999999999999999999 78999999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQG 275 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~ 275 (447)
|+|.+.|+++|+++|+++|+++|+|++| .++...+..+++|+++.|+||++|++|+.++|+++.+ +++.+.+...+.
T Consensus 163 ptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~- 241 (392)
T 3qhx_A 163 PLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQN- 241 (392)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH-
T ss_pred CCcEEecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHH-
Confidence 9999999999999999999999999999 4555677788999999999999999885445999887 688888876665
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|...++..++.+++.++.+..+++++.++++++.++|++++. .+.+|+++++|+|++++++++ |.|++++
T Consensus 242 ---~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~~ 315 (392)
T 3qhx_A 242 ---GAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR---GFGGMVS 315 (392)
T ss_dssp ---HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEE
T ss_pred ---hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCC---CCceEEE
Confidence 45667777788887778888888999999999999999998865 789999999999999999886 7899999
Q ss_pred EEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 354 LDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 354 ~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
|++++ .+.++.|++.|+.. + +++|+|+.++++++|++.++..++.+ .+|+.+++||||+| .++++++|++|
T Consensus 316 ~~l~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg-~e~~~~~i~~l 387 (392)
T 3qhx_A 316 VRMRAGRTAAEQLCAKTNIF---I-LAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADLLDDL 387 (392)
T ss_dssp EEETTCHHHHHHHHHHCSSS---E-ECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECC-SSCHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHhCCCc---e-ECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEec-cCCHHHHHHHH
Confidence 99985 56688999999873 4 79999999999999998888777665 68999999999999 99999999999
Q ss_pred HHHH
Q 013210 433 EKAL 436 (447)
Q Consensus 433 ~~al 436 (447)
.++|
T Consensus 388 ~~al 391 (392)
T 3qhx_A 388 KQAL 391 (392)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9987
No 7
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=100.00 E-value=1.8e-51 Score=409.75 Aligned_cols=380 Identities=33% Similarity=0.505 Sum_probs=331.5
Q ss_pred chhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
++.|.++|+. ....+|++.+|||.++||.+++.+++.+.+.+. ...|.|+|+.++...++++.+|+++|.+.+++
T Consensus 5 ~~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~ 79 (389)
T 3acz_A 5 DITTTLLHPK-GDHVLHSHAYPIFQTSTFCFDSTQQGADLFMGK----GEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAA 79 (389)
T ss_dssp CHHHHHHSCS-SCCSTTBSSCCBCCCSBBCCSSHHHHHHHHTTC----SSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcceeEEecC-CCCCCCCCCCCcccCCceecCChHHHHHhhcCC----CCCcccCCCCChHHHHHHHHHHHHhCCCeEEE
Confidence 5778888866 445689999999999999999998888877653 35689999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++||++|+.+++++++++||+|+++.+.|+++...+...... .|+++.+++..|++++++++ ++++++|++++|+||+
T Consensus 80 ~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~npt 157 (389)
T 3acz_A 80 FGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPR-FGIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPT 157 (389)
T ss_dssp ESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHH-TTCEEEEECTTCHHHHHHTC-CTTEEEEEEESSCTTT
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCC
Confidence 999999999999988999999999999999988776444444 79999999999999999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGAL 277 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~ 277 (447)
|.+.|+++|.++|+++|+++|+|++|+ +....+..+++|++++|+||+++++|+|+||+++.++ ++++.+.....
T Consensus 158 G~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~--- 234 (389)
T 3acz_A 158 CKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK--- 234 (389)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH---
T ss_pred CeecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH---
Confidence 999999999999999999999999994 4444667789999999999999999998889999888 88888876654
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|...++..++.++..++.+..++++..++++.+.+.|++++. .+.+|+++++|.+.++.++.+ |.|++++|.
T Consensus 235 -~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~---g~g~~~~~~ 310 (389)
T 3acz_A 235 -DAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGSTFLFE 310 (389)
T ss_dssp -HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEE
T ss_pred -hcCCCCCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCeEEEEE
Confidence 34566677777777778888888899999999999999999875 788999999999999988765 678999999
Q ss_pred eCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+++.+....+++.++.. . .++|+|+.+|++++|+..+|..++++++..+|++++.||||+| .+++++++++|.++
T Consensus 311 l~~~~~~~~~l~~~~i~---~-~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~~~~~~li~~l~~a 385 (389)
T 3acz_A 311 MKSFEAAKKLMEHLKVC---T-LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQA 385 (389)
T ss_dssp ESSHHHHHHHHTTCSSS---E-EBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhCCCc---E-ECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHH
Confidence 98655566676666542 2 5889999999999999999999999999999999999999999 99999999999999
Q ss_pred HHH
Q 013210 436 LSR 438 (447)
Q Consensus 436 l~~ 438 (447)
|++
T Consensus 386 l~~ 388 (389)
T 3acz_A 386 LEL 388 (389)
T ss_dssp HTC
T ss_pred Hhh
Confidence 864
No 8
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=1.6e-50 Score=403.32 Aligned_cols=377 Identities=28% Similarity=0.430 Sum_probs=320.4
Q ss_pred CCCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
+++++.|+++|+....+.+|++.+|||.++||.+++.+. ..+.|.|+|+.++..+++|+++|+++|.+.
T Consensus 4 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~lr~~la~~~g~~~ 72 (393)
T 1n8p_A 4 ESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPAN-----------PIGTYEYSRSQNPNRENLERAVAALENAQY 72 (393)
T ss_dssp SSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSS-----------BSSSCCBTTTCCHHHHHHHHHHHHHTTCSE
T ss_pred CCCCccceEEecCCCccCCCCcCCCcccccceeeccccc-----------cccCcceecCCChhHHHHHHHHHHHhCCCc
Confidence 445788888885433337899999999999999976311 124689999999999999999999999988
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
+++++||++|++++++ ++++||+|+++.++|+++...+...+.. .|.++.+++.+| ++|++++ +++|++|++++|+
T Consensus 73 ~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d-~~l~~~i-~~~t~lv~~~~~~ 148 (393)
T 1n8p_A 73 GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSFTNDLL-NDLPQLI-KENTKLVWIETPT 148 (393)
T ss_dssp EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEEESSHH-HHHHHHS-CSSEEEEEECSSC
T ss_pred EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEeCCCh-HHHHHhc-ccCceEEEEECCC
Confidence 9999999999999999 8899999999999999887766445554 799999999888 9999999 7789999999999
Q ss_pred CCCccccCHHHHHHHHHhc----CCEEEEeCCCCCC-CCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHH
Q 013210 197 NPTLAVANIPELSRLAHDK----GVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMM 270 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~----gi~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~ 270 (447)
||+|.++|+++|.++|+++ |+++|+|++|+.+ ..++..+++|+++.|+||++|++|+|+||+++. ++++++.+.
T Consensus 149 nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~ 228 (393)
T 1n8p_A 149 NPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ 228 (393)
T ss_dssp TTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH
T ss_pred CCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHH
Confidence 9999999999999999999 9999999999433 236667799999999999999999999899987 578888887
Q ss_pred HHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC---eeeCCCCCCCchhHHHHHHhccCCC
Q 013210 271 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL---KVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 271 ~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~---~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
..+. ..|..+++..++.+...++.+..++++..++++.+.+.|++++. .+.+|++.++|.++++.+.++ +
T Consensus 229 ~~~~----~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~---~ 301 (393)
T 1n8p_A 229 FLQN----AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR---D 301 (393)
T ss_dssp HHHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSG---G
T ss_pred HHHH----hcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCC---C
Confidence 6654 34555566666666666778888889999999999999988753 567899888999999987765 3
Q ss_pred -c-CcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013210 348 -F-GGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 424 (447)
Q Consensus 348 -~-g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 424 (447)
. |++++|.+++ ...+..+++.++.. + +++|+|++|++..+|+..+|..++.+++.++|++++.||||+| .++
T Consensus 302 ~~~~~i~~~~l~~~~~~~~~~l~~l~~~---~-~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g-~~~ 376 (393)
T 1n8p_A 302 ALGGGMISFRIKGGAEAASKFASSTRLF---T-LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG-IED 376 (393)
T ss_dssp GCCCSEEEEEESSCHHHHHHHHHHCSSS---E-ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC-SSC
T ss_pred CCCccEEEEEeCCcHHHHHHHHhhCCcc---e-ECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEc-cCC
Confidence 5 8899999984 45688899998763 3 6999999999999999889988888899999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhh
Q 013210 425 LDQRWSQFEKALSRMQ 440 (447)
Q Consensus 425 ~~~~i~~l~~al~~~~ 440 (447)
++++|++|.++|+++.
T Consensus 377 ~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 377 TDDLLEDIKQALKQAT 392 (393)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 9
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=100.00 E-value=1.5e-49 Score=397.51 Aligned_cols=378 Identities=29% Similarity=0.455 Sum_probs=313.9
Q ss_pred CCCchhhHhhhcCCC-CCCC-CccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC
Q 013210 37 AWEDPAAALASARHE-FGEH-GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~-~~~~-~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~ 114 (447)
+++.+.|+++|+... ...+ |++.+|||.+|||.+++..+ ...|.|+|+.++...++|+.+|+++|.
T Consensus 15 ~~~~~~t~~~h~g~~~~~~~~~~~~~pi~~stt~~~~~~~~------------~~~~~y~r~~~p~~~~l~~~la~~~g~ 82 (403)
T 3cog_A 15 HFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQ------------HSGFEYSRSGNPTRNCLEKAVAALDGA 82 (403)
T ss_dssp CCTTHHHHHHHTTCCGGGSTTCBSSCCBCCCSCBCCC--------------------------CHHHHHHHHHHHHHHTC
T ss_pred ccCCcccEEEeCCCCCCcCCCCCccCCeeccceeecCCccc------------cCCCcccCCCCchHHHHHHHHHHHhCC
Confidence 345788999996543 4456 89999999999999887532 124779999999999999999999999
Q ss_pred CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEc
Q 013210 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 194 (447)
Q Consensus 115 ~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~ 194 (447)
+..+++++|++|+.++++ ++++||+|+++.+.|++++..+...... .|+++.+++.+|+++|++++ +++|++|++++
T Consensus 83 ~~~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~t~~v~~~~ 159 (403)
T 3cog_A 83 KYCLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASE-FGLKISFVDCSKIKLLEAAI-TPETKLVWIET 159 (403)
T ss_dssp SEEEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGG-GTCEEEEECTTSHHHHHHHC-CTTEEEEEEES
T ss_pred CcEEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CcCCeEEEEEC
Confidence 888888899999999998 8899999999999999988777555554 79999999999999999999 78899999999
Q ss_pred CCCCCccccCHHHHHHHHHhcC-CEEEEeCCCCCC-CCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHH
Q 013210 195 ISNPTLAVANIPELSRLAHDKG-VTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMD 271 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~g-i~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~ 271 (447)
|+||+|.+.|+++|+++|+++| +++|+|++|+.+ ...+..+++|++++|+||+++++|++.+|++++ ++++++.+..
T Consensus 160 p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~ 239 (403)
T 3cog_A 160 PTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF 239 (403)
T ss_dssp SCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH
T ss_pred CCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH
Confidence 9999999999999999999999 999999999443 345667899999999999999888754599988 4788888876
Q ss_pred HhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013210 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 349 (447)
Q Consensus 272 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g 349 (447)
... ..|...++..++++.+.++++..+++++.+++..+.++|++++. ++.+|+++++|++.++.+..+ +.|
T Consensus 240 ~~~----~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g 312 (403)
T 3cog_A 240 LQN----SLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCT 312 (403)
T ss_dssp HHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCC
T ss_pred HHH----hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCC---CCc
Confidence 655 34556667777777777788888999999999999999998876 788999999999999887654 679
Q ss_pred cEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 350 GLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 350 ~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
++++|.++ ..+...++++.++... .++|+|+.+|++++|+..+|...+++++..+|+++++||||+| .++++++
T Consensus 313 ~~~~~~l~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg-~e~~~d~ 387 (403)
T 3cog_A 313 GMVTFYIKGTLQHAEIFLKNLKLFT----LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG-LEDEEDL 387 (403)
T ss_dssp SEEEEEESSCHHHHHHHHHHCSSSE----ECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHH
T ss_pred eEEEEEecCCHHHHHHHHHhCCcce----EccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHH
Confidence 99999997 3455777777776522 5899999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhhh
Q 013210 429 WSQFEKALSRMQD 441 (447)
Q Consensus 429 i~~l~~al~~~~~ 441 (447)
|++|.++|+++.+
T Consensus 388 i~~l~~al~~~~~ 400 (403)
T 3cog_A 388 LEDLDQALKAAHP 400 (403)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987754
No 10
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=100.00 E-value=2.2e-49 Score=395.99 Aligned_cols=382 Identities=36% Similarity=0.505 Sum_probs=298.1
Q ss_pred chhhHhhhcCC-CCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASARH-EFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.|.++|+.. ....++++.+|+++++|+.++++++.... ++|+.+.|.|+|+.++..+++++.+++++|.+..+
T Consensus 9 ~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i 84 (398)
T 1gc0_A 9 GFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAAC----FAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGL 84 (398)
T ss_dssp CHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC-------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcCceeEeCCCCCCCCCCCcCCCccCCCccccCCHHHHHHh----hcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEE
Confidence 57788888543 34467999999999999999987554432 55667789999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+++++++++++||+|+++.+.|+++...+...... .|+++.+++.+|+++|++++ ++++++|++++|+||
T Consensus 85 ~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~np 162 (398)
T 1gc0_A 85 ALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAM-TPATRVIYFESPANP 162 (398)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTT
T ss_pred EECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCC
Confidence 9999999999999999999999999999999998877544444 79999999999999999999 778999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGA 276 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~~ 276 (447)
+|.+.|+++|.++|+++|+++|+|++|+. ....+..+++|+++.|+||+++++|+++||+++.+++.+. .+.....
T Consensus 163 tG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~-- 240 (398)
T 1gc0_A 163 NMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLK-- 240 (398)
T ss_dssp TCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHH--
T ss_pred CcccccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhh--
Confidence 99999999999999999999999999943 2334556789999999999999999888899999987765 4554433
Q ss_pred hhh-cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 277 LML-LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 277 ~~~-~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
. .+.+.++..++.+...++++..++++..++++.+.+.|++++. .+.+|+++++|+++++.+..+ +.|++++
T Consensus 241 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~---~~~~~~~ 315 (398)
T 1gc0_A 241 --DMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGGMIA 315 (398)
T ss_dssp --HHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-------------------CCTTEEE
T ss_pred --ccCCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC---CCceEEE
Confidence 2 4555666666666667788888999999999999999998865 677899988999888876544 5789999
Q ss_pred EEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 354 LDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 354 ~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
|.+++. +.+..+++.++... .++|+|++++++++|+..+|...+++++..+|++++.||||+| .++++++|++|
T Consensus 316 ~~l~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~~~~~~~i~~l 390 (398)
T 1gc0_A 316 FELKGGIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LEDIDDLLADV 390 (398)
T ss_dssp EEETTHHHHHHHHHHHCSSSE----ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHH
T ss_pred EEECCCHHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHH
Confidence 999853 45677777776532 6889999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHh
Q 013210 433 EKALSRM 439 (447)
Q Consensus 433 ~~al~~~ 439 (447)
.++|+++
T Consensus 391 ~~al~~~ 397 (398)
T 1gc0_A 391 QQALKAS 397 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999864
No 11
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=8.7e-49 Score=394.32 Aligned_cols=384 Identities=30% Similarity=0.426 Sum_probs=321.8
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.|+++|+. .....+|++.+||++++||.+++++++.+.+.. +...|.|+|..++...++++++|+++|.+..+
T Consensus 2 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~----~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v 77 (421)
T 2ctz_A 2 RFETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFAL----KEFGNIYSRIMNPTVDVLEKRLAALEGGKAAL 77 (421)
T ss_dssp CHHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTT----TTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcceeeeeCCCCCCcCCCCccCCeeccceeeeCCHHHHHHhhcc----ccCCCcccCCCChHHHHHHHHHHHHhCCCceE
Confidence 4677888854 334468999999999999999998777766642 34578999999999999999999999998888
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe-CCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV-DISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v-~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
+++||++|+++++++++++||+|+++.++|+++...+...... .|+++.++ +.+|+++|++++ +++|++|++++++|
T Consensus 78 ~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~n 155 (421)
T 2ctz_A 78 ATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIGN 155 (421)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEECCTTCCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred EecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCCHHHHHHhh-ccCCeEEEEECCCC
Confidence 8999999999999998999999999999999988876433334 79999999 988999999999 77999999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-C-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC--hHH----HHHH
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-S-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANL----VNSM 269 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~--~~~----~~~l 269 (447)
|+|.+.|+++|.++|+++|+++|+|++| + +....+...++|++++|+||+++++|.++||+++.+ +++ ++.+
T Consensus 156 ~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l 235 (421)
T 2ctz_A 156 PALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLL 235 (421)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHH
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhh
Confidence 9999999999999999999999999999 4 333456667899999999999999998887777753 222 1222
Q ss_pred HH----------------------HhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eee
Q 013210 270 MD----------------------LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVL 325 (447)
Q Consensus 270 ~~----------------------~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~ 325 (447)
.. .+.......|..+.+..+++....++.+..+++++.++++++.+.|++++. .+.
T Consensus 236 ~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~ 315 (421)
T 2ctz_A 236 TEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVN 315 (421)
T ss_dssp HSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred ccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEE
Confidence 11 111111235667778888888888888888999999999999999999865 456
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
+|+++++|+|++++++++. +.|++++|.+++. +.+..+++.++.. + +++|+|+.++++.+|+..+|..++.++
T Consensus 316 ~p~~~~~~~~~~~~~~~~~--~~g~ivsf~l~~~~~~~~~~~~~l~~~---~-~~~~~G~~~sl~~~~~~~~h~~~~~~~ 389 (421)
T 2ctz_A 316 YPGLPHHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLI---S-HLANVGDTRTLAIHPASTTHSQLSPEE 389 (421)
T ss_dssp CTTSTTCTTHHHHHHHHTT--CCCSEEEEEETTHHHHHHHHHHTCSSS---E-ECSCCCCSSCEEECGGGTTTTTSCHHH
T ss_pred CCCCCCCCCHHHHHHhccC--CCceEEEEEeCCCHHHHHHHHHhCCcc---e-ecccCCCCCceeeCCcccccccCCHHH
Confidence 8999999999999988721 6899999999863 5678899998863 3 689999999999999999999999999
Q ss_pred HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 405 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
+..+|++++.||+|+| .+++++++++|.++|
T Consensus 390 ~~~~g~~~~~vRlS~g-~e~~~~li~~l~~al 420 (421)
T 2ctz_A 390 QAQAGVSPEMVRLSVG-LEHVEDLKAELKEAL 420 (421)
T ss_dssp HHHHTCCTTEEEEECC-SSCHHHHHHHHHHHT
T ss_pred HHhcCCCCCeEEEEeC-CCCHHHHHHHHHHHh
Confidence 9999999999999999 999999999999987
No 12
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-47 Score=384.79 Aligned_cols=379 Identities=31% Similarity=0.465 Sum_probs=316.5
Q ss_pred chhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
++.|.++|+....+.++++++||+.++|+.+++++.+.+.+. . ...|.|++..++..+++++.+|+++|.+.+++
T Consensus 2 ~~~t~~~~~~~~~~~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~----~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~ 76 (412)
T 2cb1_A 2 EYTTLAVLAGLPEDPHGAVGLPIYAVAAYGFKTLEEGQERFA-T----GEGYVYARQKDPTAKALEERLKALEGALEAVV 76 (412)
T ss_dssp CHHHHHHHTTCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHH-H----CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CccceeeecCCCcCCCCCcCCCccccceeecCChHHHHHHhc-c----ccCcCcCCCCChHHHHHHHHHHHHhCCCcEEE
Confidence 466788885433336899999999999999999887777765 2 24688999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
|+||++|+++++++++++||+|+++.++|+++...+...+.. .|.++.+++.+ +++|++++ ++++++|++++|+||+
T Consensus 77 ~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~l~~~i-~~~~~~v~~~~~~n~~ 153 (412)
T 2cb1_A 77 LASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL-MGVTVRYVDPE-PEAVREAL-SAKTRAVFVETVANPA 153 (412)
T ss_dssp ESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT-TTCEEEEECSS-HHHHHHHC-CTTEEEEEEESSCTTT
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCC-HHHHHHHh-ccCCeEEEEeCCCCCC
Confidence 999999999999999999999999999999988777544554 79999999875 99999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh--------------
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-------------- 263 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-------------- 263 (447)
|.+.|+++|.++|++||+++|+|++|+. +...+...++|+++.|+||+++++|+++||+++.++
T Consensus 154 G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 233 (412)
T 2cb1_A 154 LLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPD 233 (412)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-
T ss_pred cccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEecccccccccccccccc
Confidence 9999999999999999999999999943 445666778999999999999999998877776663
Q ss_pred -------------HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCC
Q 013210 264 -------------NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-L-KVLYPG 328 (447)
Q Consensus 264 -------------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~ 328 (447)
++.+.++... ....|..+.+..++.....++.+..++++..++++++.+.|.+++ . .+.+|+
T Consensus 234 ~~g~~~~~~~~~~~~~~~~r~~~---~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~ 310 (412)
T 2cb1_A 234 LKGQIPWEALRARCFPERVRTLG---LSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPG 310 (412)
T ss_dssp ------HHHHGGGHHHHHHHHHH---TTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTT
T ss_pred ccccchhhccchHHHHHHHHHHH---HHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCC
Confidence 3334443332 113455566777777777788888888888899999999999874 4 477899
Q ss_pred CCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhc
Q 013210 329 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 408 (447)
Q Consensus 329 ~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~ 408 (447)
..++|+|++++++++ +.|++++|.+.+.+....+++.+.. -. +.|+|+.++++.+|+..++..++++++.++
T Consensus 311 ~~~~p~~~~~~~~~~---~~~~iv~~~~~~~~~~~~~l~~~~i----~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~ 382 (412)
T 2cb1_A 311 LPEDPAHRNARKYLA---SGGPILTLDLGDLERASRFLGAIRL----LK-AANLGDARTLLVHPWTTTHSRLKEEARLQA 382 (412)
T ss_dssp STTCTTHHHHHHHCS---SSCSEEEEECSSHHHHHHHHHHCSS----EE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHT
T ss_pred CCCCccHHHHHHhCC---CCceEEEEEeCCHHHHHHHHHhCCe----ee-ecccCCCcceeecCcccccccCCHHHHHhc
Confidence 889999999999886 6789999999444455566666543 22 678899999999999888888999999999
Q ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 409 GISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 409 g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
|++++.||+|+| .++++++|++|.++|++
T Consensus 383 g~~~~~iR~s~g-~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 383 GVTPGLVRVSVG-LEDPLDLLALFEEALEA 411 (412)
T ss_dssp TCCTTEEEEECC-SSCHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 999999999999 99999999999999975
No 13
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=100.00 E-value=4.8e-47 Score=379.59 Aligned_cols=385 Identities=34% Similarity=0.557 Sum_probs=323.2
Q ss_pred CchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
+.+.|.++|+......++++.+|++.++++.+++.+++.+.+.+ +.+.|.|++.+++..+++++.+|+++|.+.++
T Consensus 6 ~~~~t~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i 81 (404)
T 1e5e_A 6 MTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAG----QESGYIYTRLGNPTVSNLEGKIAFLEKTEACV 81 (404)
T ss_dssp CCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTT----SSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCccceeeecCCCCCCCCCcCCCCcCCCccccCCHHHHHHhhcC----CcCCccccCCcChHHHHHHHHHHHHhCCCcEE
Confidence 46788888854334457899999999999999998666555433 24568899988999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+.+++++++++||+|+++.|.|+++...+...+.. .|+++++++.+|+++|++++ +++|++|++++|+||
T Consensus 82 ~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~t~~v~l~~p~Np 159 (404)
T 1e5e_A 82 ATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFINTAIPGEVKKHM-KPNTKIVYFETPANP 159 (404)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHHC-CTTEEEEEEESSCTT
T ss_pred EeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCcEEEEECCCCC
Confidence 9999999999999999999999999999999998855433333 79999999998999999999 778999999999999
Q ss_pred CccccCHHHHHHHHHh-cCCEEEEeCCCCCCCC-CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhhh
Q 013210 199 TLAVANIPELSRLAHD-KGVTVVVDNTFSPLVL-SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQG 275 (447)
Q Consensus 199 tG~v~~l~~I~~la~~-~gi~livD~~~~~~~~-~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~ 275 (447)
||.+.|+++|+++|++ +|+++|+|++|..+.+ .+..+++|+++.|+||+++++|+|++|++++++++++ .+...+.
T Consensus 160 tG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~- 238 (404)
T 1e5e_A 160 TLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIK- 238 (404)
T ss_dssp TCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCC-
T ss_pred CCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHH-
Confidence 9999999999999999 9999999999954432 4666799999999999999999987799999998877 7765544
Q ss_pred hhhhc-CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 276 ALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 276 ~~~~~-g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
.. |...++..++++...++++..++++..++.+.+.++|++.+. .+.+|.+.+.|+++++....+ +.|+++
T Consensus 239 ---~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~ 312 (404)
T 1e5e_A 239 ---DITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYGSMI 312 (404)
T ss_dssp ---CCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS---SCCSEE
T ss_pred ---hCCCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCceEE
Confidence 33 455566666666666677778888889999999999988764 578899999999998887654 678999
Q ss_pred EEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 353 CLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 353 ~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
.|.+++. +...+++++++.. . .++++|+.+|++++|+..++..++++++...|+++++||||+| .+++++++++
T Consensus 313 ~~~~~~~~~~~~~~l~~~~i~---~-~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~e~~~~li~~ 387 (404)
T 1e5e_A 313 TFILKSGFEGAKKLLDNLKLI---T-LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADELIAD 387 (404)
T ss_dssp EEEETTHHHHHHHHHHTCSSS---E-ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhCCCc---e-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-CCCHHHHHHH
Confidence 9999864 3455666665532 1 5788999999999999999999999999999998899999999 8999999999
Q ss_pred HHHHHHHhhh
Q 013210 432 FEKALSRMQD 441 (447)
Q Consensus 432 l~~al~~~~~ 441 (447)
|.++++.+-+
T Consensus 388 l~~al~~~~~ 397 (404)
T 1e5e_A 388 FKQGLDALLR 397 (404)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 14
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=100.00 E-value=2.3e-45 Score=366.83 Aligned_cols=383 Identities=35% Similarity=0.563 Sum_probs=317.0
Q ss_pred CchhhHhhhcCCC-CCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASARHE-FGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~~~-~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+++.|+++|+... ...++++..|++.++++..+.+.+.... +.++.+.|.|++..++..+++++.+++++|.+..
T Consensus 7 ~~~~t~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~ 82 (398)
T 2rfv_A 7 YGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAAR----FALEESGYIYTRLGNPTTDALEKKLAVLERGEAG 82 (398)
T ss_dssp SCHHHHHHHTTCCCCTTTCCSSCCCCCCSBCCCSSHHHHHHH----C-----CCSBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred CCCceeEeecCCcCccCCCCcCCCCcCCCccccCCHHHHHHh----hcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcE
Confidence 4678888886543 4567899999999999999988544433 3445667899999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++++||++|+.+++++++++||+|+++.+.|+++...+...... .|.++.+++.+|+++|++++ ++++++|++++|+|
T Consensus 83 i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~n 160 (398)
T 2rfv_A 83 LATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAAKPEEIRAAM-RPETKVVYIETPAN 160 (398)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHH-TTCEEEEECTTSHHHHHHHC-CTTEEEEEEESSBT
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCC
Confidence 99999999999999999999999999999999998876433333 68999999999999999999 77899999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQG 275 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~ 275 (447)
|+|.+.|+++|.++|++||+++|+|++|+. ....+..+++|+++.|+||+++++|.|+||++++++++++ .+.....
T Consensus 161 ptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~- 239 (398)
T 2rfv_A 161 PTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLK- 239 (398)
T ss_dssp TTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHH-
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHH-
Confidence 999999999999999999999999999953 3335666789999999999999999888899999988876 5554433
Q ss_pred hhhhc-CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 276 ALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 276 ~~~~~-g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
.. +.+.++..++++...++.+..+++++.++++.+.+.|++++. .+.+|.+...|.++++....+ +.|+++
T Consensus 240 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~ 313 (398)
T 2rfv_A 240 ---DITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS---LPGGII 313 (398)
T ss_dssp ---HTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEE
T ss_pred ---hCCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEE
Confidence 23 445555555555555667777888888899999999998874 677888888898888876543 578899
Q ss_pred EEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 353 CLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 353 ~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
+|.+++. +....+++.+... | ++++.|+.++++.+|+..++..++++++..+|++++.||||+| .+++++++++
T Consensus 314 ~~~~~~~~~~~~~l~~~~~~~---~-i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~~i~~ 388 (398)
T 2rfv_A 314 SFEIAGGLEAGRRMINSVELC---L-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LEDPEDIIND 388 (398)
T ss_dssp EEEETTHHHHHHHHHTTCSSS---E-ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHhCCcc---e-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec-CCCHHHHHHH
Confidence 9999853 4567777777653 3 7899999999999888888888899999999999999999999 9999999999
Q ss_pred HHHHHHHh
Q 013210 432 FEKALSRM 439 (447)
Q Consensus 432 l~~al~~~ 439 (447)
|.++|+++
T Consensus 389 l~~al~~~ 396 (398)
T 2rfv_A 389 LEHAIRKA 396 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999865
No 15
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=1.9e-43 Score=351.46 Aligned_cols=373 Identities=29% Similarity=0.412 Sum_probs=304.6
Q ss_pred chhhHhhhc-CCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.|+++|+ +.....+|++.+||+.++|+.+++. ++ ...|.|+|+.++...++++.+|++++.+..+
T Consensus 4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i 71 (386)
T 1cs1_A 4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGF-----------NE-PRAHDYSRRGNPTRDVVQRALAELEGGAGAV 71 (386)
T ss_dssp CHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBT-----------TB-CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcceeEEecCCCccccCCCCCCCccccceeecccc-----------CC-CCCcceeCCCCccHHHHHHHHHHHhCCCcEE
Confidence 567888885 4444568999999999999998652 11 2468899999999999999999999988877
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
++++|++|+.+++++++++||+|+++.++|+++...+...... .|.++.+++.+|+++|++++ ++++++|++++|+||
T Consensus 72 ~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~np 149 (386)
T 1cs1_A 72 LTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPSNP 149 (386)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEEEECTTCHHHHHHHH-HTCCSEEEEECSCTT
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh-ccCCcEEEEeCCCCC
Confidence 7788899999999999999999999999999977766444344 79999999999999999999 678999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGA 276 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~ 276 (447)
+|.+.|+++|.++|+++|+++|+|++|+.+. ..+..+++|+++.|+||+++++|.++||+++.++ ++++.+.....
T Consensus 150 tG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~-- 227 (386)
T 1cs1_A 150 LLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN-- 227 (386)
T ss_dssp TCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH--
T ss_pred CCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHH--
Confidence 9999999999999999999999999995443 3445678999999999999999888779998875 78888876655
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
..+...++..++.+...++.+..+.++..++++.+.+.|++++. .+.+|.+...|.+.++....+ +.|++++|
T Consensus 228 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~ 302 (386)
T 1cs1_A 228 --NIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAMLSF 302 (386)
T ss_dssp --HHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEE
T ss_pred --hcCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcC---CCceEEEE
Confidence 23344455555554455667777888888999999999988765 566788888888888876533 57899999
Q ss_pred EeCCHHHHHHHHHHhhccccccccccc---ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 355 DMETEEKANRLMNYLQNYAQFGFMAVS---LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 355 ~l~~~~~~~~l~~~l~~~~~~g~~~vs---~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
.+++. .+.+...|.. .| +.++ +|+..+++++|+...+...+++++..+|++++.||||+| .+++++++++
T Consensus 303 ~~~~~--~~~~~~~l~~---~g-i~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~~~~~i~~ 375 (386)
T 1cs1_A 303 ELDGD--EQTLRRFLGG---LS-LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIAD 375 (386)
T ss_dssp EESSC--HHHHHHHHHT---CS-SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHH
T ss_pred EECCC--HHHHHHHHHh---CC-cceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEc-cCCHHHHHHH
Confidence 99743 2334444443 23 3343 788999999888888888899999999998999999999 9999999999
Q ss_pred HHHHHHHhh
Q 013210 432 FEKALSRMQ 440 (447)
Q Consensus 432 l~~al~~~~ 440 (447)
|.++|+++.
T Consensus 376 l~~al~~~~ 384 (386)
T 1cs1_A 376 LENGFRAAN 384 (386)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998874
No 16
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=100.00 E-value=1e-42 Score=353.24 Aligned_cols=373 Identities=29% Similarity=0.460 Sum_probs=305.5
Q ss_pred CchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
+.+.+.+++-....+..+++++||+.++++.+++... ...|.|++.+++..+.+++.+++++|.+.++
T Consensus 85 ~~~~~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~------------~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i 152 (464)
T 1ibj_A 85 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIE------------NGPYDYTRSGNPTRDALESLLAKLDKADRAF 152 (464)
T ss_dssp CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSC------------CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCcCCeEEECCCCCCCCCCCCccHHhhhhhhhhcccc------------cCCccccCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 4567778874332235688999999999987654310 2357788999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+.+++. ++++||+|+++.+.|+++...+...... .|.++++++.+|+++|++++ ++++++|++++|+||
T Consensus 153 ~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~tk~v~l~~p~Np 229 (464)
T 1ibj_A 153 CFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNP 229 (464)
T ss_dssp EESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGG-GTCEEEEECTTSHHHHHHHC-CSSEEEEEECSSCTT
T ss_pred EECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCceEEEEeCCCCC
Confidence 99999999998885 7889999999999999998776444444 79999999999999999999 788999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCC-CCeeEEEEEcC-hHHHHHHHHHhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGG-ADIIAGAVCGP-ANLVNSMMDLHQG 275 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~-g~~igG~l~~~-~~~~~~l~~~~~~ 275 (447)
+|.+.|+++|+++|++||+++|+|++| .+....+..+++|+++.|+||+++++ |.++ |+++++ +++++.+...+.
T Consensus 230 tG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~-G~l~~~~~~l~~~l~~~~~- 307 (464)
T 1ibj_A 230 RQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGEKLAKEVYFLQN- 307 (464)
T ss_dssp TCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCC-EEEEECSHHHHHHHHHHHH-
T ss_pred CCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcE-EEEEEChHHHHHHHHHHHH-
Confidence 999999999999999999999999999 34444566689999999999999866 5565 899887 478888876654
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..++++...++.+..++++...+...+.+.|++++. ++.++++..+|.+.++....+ |+|++++
T Consensus 308 ---~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---g~g~~~~ 381 (464)
T 1ibj_A 308 ---SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGSVFS 381 (464)
T ss_dssp ---HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCS---CCCSEEE
T ss_pred ---hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCC---CCceEEE
Confidence 34555566666666666777777888888888888999988763 788899988888877765432 5789999
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
|.+++.+....|++.|... | ++++.|+.++++++|+..++...+++++..+|+++++||||+| .+++++++++|.
T Consensus 382 ~~l~~~~~~~~~~~~L~~~---g-i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~edi~~li~~L~ 456 (464)
T 1ibj_A 382 FITGSVALSKHLVETTKYF---S-IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLD 456 (464)
T ss_dssp EECSCHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-SSCHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhcCcc---e-EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHHHHHHH
Confidence 9997654456788888763 3 7999999999999998777777777777778888899999999 899999999999
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|+++
T Consensus 457 ~al~~~ 462 (464)
T 1ibj_A 457 IAFKTF 462 (464)
T ss_dssp HHHHSC
T ss_pred HHHhhc
Confidence 998754
No 17
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=100.00 E-value=3e-38 Score=307.10 Aligned_cols=323 Identities=33% Similarity=0.539 Sum_probs=262.0
Q ss_pred HHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhh
Q 013210 103 NLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI 182 (447)
Q Consensus 103 ~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i 182 (447)
++++++|+++|++..++++||++|+.+++.+++++||+|+++.++|+++...+...... .|.++.+++..|++++++++
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i 80 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIEKHL 80 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHTC
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh
Confidence 68999999999988888999999999999999999999999999999987776432333 68899999988999999999
Q ss_pred ccCCceEEEEEcCCCCCccccCHHHHHHHHHh-cCCEEEEeCCCCCC-CCCccCCCCeEEEeCCCccccCCCCeeEEEEE
Q 013210 183 VQGRTKVLYFESISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVC 260 (447)
Q Consensus 183 ~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~ 260 (447)
++++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++|+.. ...+.+.++|+++.|+||+++++|.|++|+++
T Consensus 81 -~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~ 159 (331)
T 1pff_A 81 -KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVC 159 (331)
T ss_dssp -CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEE
T ss_pred -cCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEE
Confidence 7889999999999999999999999999999 99999999999432 22344678999999999999999988559999
Q ss_pred cCh-HHHHHHHHHhhhhhhh-cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhH
Q 013210 261 GPA-NLVNSMMDLHQGALML-LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHE 336 (447)
Q Consensus 261 ~~~-~~~~~l~~~~~~~~~~-~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~ 336 (447)
.++ ++++.+..... . .+...++..++.+...++.+..+.++..++.+.+.+.|++.+. .+.++.+...|.+.
T Consensus 160 ~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~ 235 (331)
T 1pff_A 160 SRADIIAKVKSQGIK----DITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHE 235 (331)
T ss_dssp ECHHHHHHHHHTCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHH
T ss_pred eCcHHHHHHHHHHHH----hhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence 998 88888776544 2 3444555555544445556666777788888889999987743 66788888888888
Q ss_pred HHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEE
Q 013210 337 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 416 (447)
Q Consensus 337 l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iR 416 (447)
++....+ +.|++++|.+++.+....+++...+ -+.++|+|+.+|++.+++...+...+++++..+|++++.||
T Consensus 236 ~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~gI----~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR 308 (331)
T 1pff_A 236 IAKKQMK---MFGSMIAFDVDGLEKAKKVLDNCHV----VSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIR 308 (331)
T ss_dssp HHHHHCS---SCCSEEEEECSSHHHHHHHHHTCSS----SEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEE
T ss_pred HHHhhCC---CCceEEEEEECCHHHHHHHHHhCCC----ceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEE
Confidence 7766543 5788999999854444444433322 11267899999999888888888889999999999899999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHh
Q 013210 417 MSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 417 iS~g~~~~~~~~i~~l~~al~~~ 439 (447)
||+| .++++++++++.++|+++
T Consensus 309 is~~-~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 309 LSVG-CENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EECC-SSCHHHHHHHHHHHHHTC
T ss_pred EEEe-cCCHHHHHHHHHHHHHHh
Confidence 9999 999999999999999753
No 18
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=100.00 E-value=2.3e-32 Score=272.27 Aligned_cols=327 Identities=20% Similarity=0.235 Sum_probs=249.4
Q ss_pred CCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE---eCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHHHHHH-----
Q 013210 86 PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT----- 156 (447)
Q Consensus 86 ~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~---tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~----- 156 (447)
++++.|.|++. ..+.+++.+|+++|++.+++ |+||++|+.+++.+++++||+|+++. +.|+++...+.
T Consensus 49 ~~~~~~~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~ 125 (409)
T 3jzl_A 49 HPSTGYGYDDE---GRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQG 125 (409)
T ss_dssp CCCCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSS
T ss_pred CCCcCCCCChh---HHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccch
Confidence 44677888875 47889999999999998877 89999999999999999999999998 99999876652
Q ss_pred -hhcCcccCeeEEEeCC-----CCHHHHHHhhccCCceEEEEEc----CCCCCccccCHHHHHHHHHh--cCCEEEEeCC
Q 013210 157 -HFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNT 224 (447)
Q Consensus 157 -~~~~~~~g~~~~~v~~-----~d~~~l~~~i~~~~t~lV~i~~----~~NptG~v~~l~~I~~la~~--~gi~livD~~ 224 (447)
..+.. .|+++++++. .|+++|++++ +++|++|++++ |+||+|.+.|+++|+++|++ +|+++|+|++
T Consensus 126 ~~~l~~-~G~~~~~v~~~~~g~~d~e~l~~ai-~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a 203 (409)
T 3jzl_A 126 QGSLKD-FHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNC 203 (409)
T ss_dssp SSCTGG-GTCEEEECCCCTTSCCCHHHHHHHC-CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred hhHHHH-cCCEEEEeCCCCCCCcCHHHHHHhc-cCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCC
Confidence 23334 6899999988 4999999999 78899999999 99999999999999999999 9999999999
Q ss_pred CCCCC--CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHH
Q 013210 225 FSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG 300 (447)
Q Consensus 225 ~~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~ 300 (447)
|+.+. ..+...++|++++|+||++|++|.++||++++++++++.+..... +.....+..+.+ +++++++++.+.
T Consensus 204 ~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~--~~~~l~gl~~~~ 281 (409)
T 3jzl_A 204 YGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYS--LLEMYQGFFLAP 281 (409)
T ss_dssp TCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTC--HHHHHHHHHHHH
T ss_pred cccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHH--HHHHHHHHhhHH
Confidence 95543 467778999999999999999887778999999999998876432 121234444432 233556667788
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc-
Q 013210 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA- 379 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~- 379 (447)
.+++++.+++.++++.|+++|.++ +|+ +++|. ...+++|.+++.+.+.+|++.|+.....+...
T Consensus 282 ~r~~~~~~~a~~la~~L~~~g~~v-~p~-~~~~~-------------~~~i~~i~l~~~~~~~~~~~~L~~~~~~~s~~~ 346 (409)
T 3jzl_A 282 HVTAQAIKGARFTAAMLAEFGVEA-DPV-WDAPR-------------TDLIQSVSFHNKEKMVAFAQAIQAASPVNAHVL 346 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC-------------SSSCCEEECSCHHHHHHHHHHHHHTSSSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcc-cCC-CCCCC-------------ccEEEEEEeCCHHHHHHHHHHHHhcCcccccCC
Confidence 899999999999999999999988 776 55553 33489999998888999999998632111111
Q ss_pred ----ccccCcccccccccc---ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 380 ----VSLGYYETLMSCSGS---STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 380 ----vs~G~~~s~~~~~a~---~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...|+.+.++...+. .+..+++ +.-.+.+.++...-| -.+-+...-.+..+++++
T Consensus 347 p~~~~~~gy~~~~~~~~~~f~~~~~~e~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 408 (409)
T 3jzl_A 347 PIGAYMPGYEDDVIMAAGTFIQGASLELT----ADGPIREPYQLYVQG-GLTYEHIKIAVTRAIQKI 408 (409)
T ss_dssp CCCBCCTTCSSCEEEECCCSSTTCSSSCE----EEEESSTTTEEEEEC-CSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCceeEeccccCCCcceeec----CCCCCCCCeEEEEcC-CccHHHHHHHHHHHHHhh
Confidence 112333333332221 1111111 112334567889888 788777777787877764
No 19
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=100.00 E-value=3.4e-32 Score=272.01 Aligned_cols=329 Identities=19% Similarity=0.214 Sum_probs=250.2
Q ss_pred CCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE---eCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHHHHH-----
Q 013210 85 GPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALL----- 155 (447)
Q Consensus 85 ~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~---tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~~~~----- 155 (447)
.++++.|.|+|. ..+.+++.+|+++|++..++ ++||++|+..++.+++++||+|+++. +.|+++...+
T Consensus 62 ~~~~~gy~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~ 138 (427)
T 3i16_A 62 FTNSSGYGYGDI---GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITEN 138 (427)
T ss_dssp SCCCCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCC
T ss_pred cCCCCCCCCCHH---HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhcccc
Confidence 344678888875 37889999999999998777 89999999999999999999999999 9999888665
Q ss_pred --HhhcCcccCeeEEEeCC-----CCHHHHHHhhcc-CCceEEEEEc----CCCCCccccCHHHHHHHHHh--cCCEEEE
Q 013210 156 --THFFPRACNITTTFVDI-----SDHEMVNSAIVQ-GRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGVTVVV 221 (447)
Q Consensus 156 --~~~~~~~~g~~~~~v~~-----~d~~~l~~~i~~-~~t~lV~i~~----~~NptG~v~~l~~I~~la~~--~gi~liv 221 (447)
...+.. .|+++++++. .|+++|++++++ ++|++|++++ |+||+|.+.|+++|+++|++ +|+++|+
T Consensus 139 ~~~~~l~~-~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~liv 217 (427)
T 3i16_A 139 SNMGSLKE-FGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFV 217 (427)
T ss_dssp CSSCCTGG-GTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred chHHHHHH-cCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEE
Confidence 123333 6999999987 499999999932 7899999999 99999999999999999999 9999999
Q ss_pred eCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccH-H-HHHHHHccCC
Q 013210 222 DNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP-K-VAFELSERIP 297 (447)
Q Consensus 222 D~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~-~-~a~~~~~~~~ 297 (447)
|++|+.+ ...+...++|++++|+||++|++|...||++++++++++.++...... ..|..+.+ . .+++++++++
T Consensus 218 D~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~--~~g~~~~~~~~~a~~~l~gl~ 295 (427)
T 3i16_A 218 DNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVP--GIGGECGSTFGVVRSMYQGLF 295 (427)
T ss_dssp ECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCT--TTGGGCCCCTTCHHHHHHHHH
T ss_pred ECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccC--ccCccCCccHHHHHHHHHHHH
Confidence 9999544 356777899999999999999988666799999999999887643211 12222222 2 2566777788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~ 377 (447)
.+..+++++.+++.+++++|++++.++ +|+ +++|+| .-+++|.+++.+.+.+|++.|+.....+.
T Consensus 296 ~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~~-------------~~i~~i~l~~~~~~~~f~~~l~~~~~~~s 360 (427)
T 3i16_A 296 LAPHISMEALKGAILCSRIMELAGFEV-MPK-YDEKRS-------------DIIQSIKFNDKDKLIEFCKGIQTGSPIDS 360 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCCS-------------SSCEEEECSSHHHHHHHHHHHHHTCSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCCc-------------cEEEEEEECCHHHHHHHHHHHhhcCcccc
Confidence 888999999999999999999999988 787 666643 33899999988889999999986321111
Q ss_pred c-----cccccCcccccccccc---ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 378 M-----AVSLGYYETLMSCSGS---STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 378 ~-----~vs~G~~~s~~~~~a~---~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. ....|+.+.++...+. .+..+++ ..-.+.+.++...-| -.+-+...-.+..++.++
T Consensus 361 ~~~p~~~~~~gy~~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3i16_A 361 FVSCEPWDMPGYTDQVIMAAGAFIQGSSIELS----ADAPIREPYIAYLQG-GLTFDHAKIGILIALSRI 425 (427)
T ss_dssp TSCCCCBCC---CCCEEEEECCSSTTCSSSSE----EEEESCTTCEEEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred cccCcCCCCCCCCCceeeccCcCCCCcccccc----CCCCCCCCeEEEEcC-CccHHHHHHHHHHHHHHH
Confidence 1 1123444444433222 1111111 112334567888888 777777777788887765
No 20
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=6.8e-32 Score=269.78 Aligned_cols=329 Identities=21% Similarity=0.236 Sum_probs=246.3
Q ss_pred CCCccccCCCCchHHHHHHHHHHHhCCCeEEE---eCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHHHHHH-------
Q 013210 88 RDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------- 156 (447)
Q Consensus 88 ~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~---tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~------- 156 (447)
..+|.|+|. .++.+|+.+|+++|++.+++ ++||++|+..++.+++++||+|++++ +.|+++...+.
T Consensus 66 ~~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 142 (427)
T 3hvy_A 66 SSGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKV 142 (427)
T ss_dssp CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred CcCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhh
Confidence 567888875 47899999999999999888 89999999999999999999999998 99998875551
Q ss_pred hhcCcccCeeEEEeCC----CCHHHHHHhhcc-CCceEEEEEc----CCCCCccccCHHHHHHHHHh--cCCEEEEeCCC
Q 013210 157 HFFPRACNITTTFVDI----SDHEMVNSAIVQ-GRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNTF 225 (447)
Q Consensus 157 ~~~~~~~g~~~~~v~~----~d~~~l~~~i~~-~~t~lV~i~~----~~NptG~v~~l~~I~~la~~--~gi~livD~~~ 225 (447)
..+.. .|+++++++. .|+++|++++++ ++|++|++++ |+||+|.+.|+++|+++|++ +|+++++|++|
T Consensus 143 ~~l~~-~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~ 221 (427)
T 3hvy_A 143 GSLRE-YGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCY 221 (427)
T ss_dssp CCTGG-GTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred hHHHH-cCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 23333 6999999988 699999999932 7899999999 99999999999999999999 89999999999
Q ss_pred CCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHH
Q 013210 226 SPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGL 301 (447)
Q Consensus 226 ~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~ 301 (447)
+.+ ...+...++|++++|+||++|++|.+.||++++++++++.++.... +.....+.++ ..+++++++++.+..
T Consensus 222 ~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~--~~a~~~~~gl~~~~~ 299 (427)
T 3hvy_A 222 GEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTF--GVMRSLYEGLFMAPH 299 (427)
T ss_dssp CTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCT--TCHHHHHHHHHHHHH
T ss_pred cccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCH--HHHHHHHHhHhHHHH
Confidence 544 3577778999999999999999887778999999999999887432 1111222222 235666667778888
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc--
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA-- 379 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~-- 379 (447)
+++++.+++.++++.|+++|.++ +|+ +++|. ...+++|.+++.+.+.+|++.|+.....+...
T Consensus 300 r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~-------------~~li~~~~l~~~~~~~~f~~~l~~~~~~~s~~~p 364 (427)
T 3hvy_A 300 VTIEAVKGAVFCARIMELAGFDV-LPK-YNDKR-------------TDIIQAIKFNDEKKLIDFIKGIQTASPVDSFVQC 364 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC-------------SSSEEEEECSSHHHHHHHHHHHHHTCSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCC-------------ceEEEEEeCCCHHHHHHHHHHhccccccccccCC
Confidence 99999999999999999999988 777 66553 33499999998888999999998632111111
Q ss_pred --ccccCccc-cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 380 --VSLGYYET-LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 380 --vs~G~~~s-~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
....|+.+ ++...+. .-..-+.|--+.-.+.+.++...-| -.+-+...-.+..+++++
T Consensus 365 ~~~~~~Gy~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3hvy_A 365 EAWDMPGYEDKVIMAAGT-FVQGASIELSADAPIREPYIGYLQG-GLTFDHAKLGVLIALSKL 425 (427)
T ss_dssp ----------CEEEECCC-SSTTCSSSSEEEEESCTTCEEEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCceeeeccc-cCCCccccccCCCCCCCCeeEEEcC-CccHHHHHHHHHHHHHHh
Confidence 12233333 3332222 1011111111122344678899999 888787777888887765
No 21
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=2.7e-32 Score=269.28 Aligned_cols=336 Identities=13% Similarity=0.133 Sum_probs=233.6
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CC
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC----SS 137 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~----~~ 137 (447)
+++++.+.+ +.+.+.+...++||.+.|.+++...+..+++++.+++++|++ .+++|+||++|+.+++++++ ++
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~ 87 (382)
T 4hvk_A 8 SAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARK 87 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGG
T ss_pred CcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCC
Confidence 344444555 777777777788888888888878888899999999999975 49999999999999999887 89
Q ss_pred CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHH
Q 013210 138 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212 (447)
Q Consensus 138 gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la 212 (447)
||+|+++.++|+++...+... .+ .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|
T Consensus 88 gd~vi~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 164 (382)
T 4hvk_A 88 GKHILVSAVEHMSVINPAKFL-QK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHANNEIGTIQPVEEISEVL 164 (382)
T ss_dssp CCEEEEETTCCHHHHHHHHHH-HH-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH-Hh-cCCEEEEeccCCCCCcCHHHHHHHh-ccCceEEEEECCCCCceeeCCHHHHHHHH
Confidence 999999999999998876433 23 58899988875 899999999 78899999999999999999999999999
Q ss_pred HhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh---hhhhcCCCccH-
Q 013210 213 HDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG---ALMLLGPTMNP- 286 (447)
Q Consensus 213 ~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~---~~~~~g~~~~~- 286 (447)
++||+ +|+|++|+ ....+....++|+++.|+||++|++| + |+++.+++. .+.....+ .......+...
T Consensus 165 ~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g--~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 238 (382)
T 4hvk_A 165 AGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEA--KLQPVILGGGQENGLRSGSENVP 238 (382)
T ss_dssp SSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTT--C-EEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHH
T ss_pred HHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCc--e-EEEEEcCcc--CcCcccccCCCcCccccCCcCHH
Confidence 99999 99999983 23344444579999999999988776 4 666654433 11111100 00011222222
Q ss_pred -HHHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013210 287 -KVAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362 (447)
Q Consensus 287 -~~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~ 362 (447)
..+. .++.. .+.+....+++.++++++.+.|++++. ++..+... +.+++++|.+++.+ .
T Consensus 239 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-~ 301 (382)
T 4hvk_A 239 SIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK----------------RLPNNVNVRFSYIE-G 301 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS----------------BCTTEEEEEETTCC-H
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccc----------------cCCCEEEEEECCCC-H
Confidence 2221 12211 123456677788999999999987744 55433211 23458889887432 4
Q ss_pred HHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..+.+.|... | +.++.|..++ .....+++....+|.+ ++.||||++ ..++++.++.+.++|++
T Consensus 302 ~~~~~~l~~~---g-i~v~~g~~~~--------~~~~~~~~~~~~~g~~~~~~~~~iRl~~~-~~~t~e~i~~~~~~l~~ 368 (382)
T 4hvk_A 302 ESIVLSLDMA---G-IQASTGSACS--------SKTLQPSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp HHHHHHHHHT---T-CBCBCC----------------CCCHHHHHTTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC---C-EEEeeCCccC--------CCCCcchHHHHHcCCChhhcCCeEEEEcC-CCCCHHHHHHHHHHHHH
Confidence 5677777653 3 5777774332 2222333455556665 589999999 76666666666655554
Q ss_pred h
Q 013210 439 M 439 (447)
Q Consensus 439 ~ 439 (447)
+
T Consensus 369 ~ 369 (382)
T 4hvk_A 369 V 369 (382)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=1.1e-31 Score=265.55 Aligned_cols=336 Identities=15% Similarity=0.143 Sum_probs=228.4
Q ss_pred cccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCe
Q 013210 68 FTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC----SSGGH 140 (447)
Q Consensus 68 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~----~~gd~ 140 (447)
+..+.+ +++.+.+...+++|.+.+.++........++++.+++++|.+ .+++|+||++|+.++++++. ++||+
T Consensus 12 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~ 91 (384)
T 1eg5_A 12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRT 91 (384)
T ss_dssp CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCE
T ss_pred CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCE
Confidence 333444 677777766677776666666555667789999999999975 69999999999999999987 78999
Q ss_pred EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc
Q 013210 141 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 215 (447)
Q Consensus 141 Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~ 215 (447)
|+++.++|+++...+.. +.. .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|+++
T Consensus 92 vl~~~~~~~~~~~~~~~-~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~ 168 (384)
T 1eg5_A 92 IITTPIEHKAVLETMKY-LSM-KGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSIMAANNEVGTIQPVEDVTRIVKKK 168 (384)
T ss_dssp EEECTTSCHHHHHHHHH-HHH-TTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHH
T ss_pred EEECCCCchHHHHHHHH-HHh-cCCEEEEEccCCCCccCHHHHHHHh-CCCCeEEEEECCCCCcccccCHHHHHHHHHhc
Confidence 99999999988776632 222 58888888763 899999999 67899999999999999999999999999999
Q ss_pred C--CEEEEeCCCC--CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHH--HHHHHHHhhhhhhhcCC--CccHH
Q 013210 216 G--VTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VNSMMDLHQGALMLLGP--TMNPK 287 (447)
Q Consensus 216 g--i~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~--~~~l~~~~~~~~~~~g~--~~~~~ 287 (447)
| +++|+|++|+ ....+...+++|+++.|+||++|++| + |+++.++++ ...+...........++ .+.+.
T Consensus 169 ~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (384)
T 1eg5_A 169 NKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG--V-GITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIV 245 (384)
T ss_dssp CTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTT--C-EEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHH
T ss_pred CCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCc--e-EEEEEcCCCccccccccCcccccccCCCCChHHHH
Confidence 9 9999999984 22333344578999999999999877 5 899888765 21111100000001121 12222
Q ss_pred HHHHHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHH
Q 013210 288 VAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLM 366 (447)
Q Consensus 288 ~a~~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~ 366 (447)
++..++.. .+.+....+++.++++++.+.|++.+.++..|... +.+.+++|.+++. +...+.
T Consensus 246 a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----------------~~~~~~~~~~~~~-~~~~~~ 308 (384)
T 1eg5_A 246 GAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI----------------SLPNTLSVSFPNI-RGSTLQ 308 (384)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS----------------BCTTEEEEECTTC-CHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCccc----------------CCCCEEEEEeCCC-CHHHHH
Confidence 22233332 13456677788999999999998865565543200 1345888888742 245677
Q ss_pred HHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 367 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 367 ~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.|.. .| +.+..|..+. .....+.+.+..+|.+ .+.+|||++ ...+++.++.+.++|+++
T Consensus 309 ~~l~~---~g-i~v~~g~~~~--------~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 372 (384)
T 1eg5_A 309 NLLSG---YG-IYVSTSSACT--------SKDERLRHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFLKKIEEI 372 (384)
T ss_dssp HHHHH---TT-EECBC--------------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHhh---CC-eEEecccccc--------CCCCcchHHHHHcCCChhhcCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 77764 33 5666553221 1111122344455654 478999999 766666666666655544
No 23
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.98 E-value=1.3e-31 Score=268.85 Aligned_cols=328 Identities=17% Similarity=0.177 Sum_probs=231.0
Q ss_pred HHHHHhhc--CCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcC----CCCeEEEe
Q 013210 74 ETMRRMFA--GELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCS----SGGHVVAA 144 (447)
Q Consensus 74 ~~~~~~~~--~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~----~gd~Vi~~ 144 (447)
+++.+.+. ..+++|.+ .+.+++...+..+++++.+++++|.+ .+++|+||++|+.++++++.. +||+|+++
T Consensus 40 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~ 119 (423)
T 3lvm_A 40 EKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITS 119 (423)
T ss_dssp HHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEEC
Confidence 55555566 56777776 67777777788899999999999986 799999999999999998874 79999999
Q ss_pred CCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEE
Q 013210 145 RTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 219 (447)
Q Consensus 145 ~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~l 219 (447)
.++|+++...+... .. .|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|++||+++
T Consensus 120 ~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~l 196 (423)
T 3lvm_A 120 KTEHKAVLDTCRQL-ER-EGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIY 196 (423)
T ss_dssp TTSCHHHHHHHHHH-HH-TTCEEEEECCCTTSCCCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEE
T ss_pred CccchHHHHHHHHH-HH-cCCEEEEeccCCCCccCHHHHHHhc-CCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEE
Confidence 99999988777433 23 58899988876 899999999 778999999999999999999999999999999999
Q ss_pred EEeCCCCC--CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh----hhhcCCC-ccHHHHH-H
Q 013210 220 VVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----LMLLGPT-MNPKVAF-E 291 (447)
Q Consensus 220 ivD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----~~~~g~~-~~~~~a~-~ 291 (447)
|+|++|+. ...+....++|+++.|+||.+|++| + |+++.+++..+.+.....+. ....++. .....+. .
T Consensus 197 i~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (423)
T 3lvm_A 197 HVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG--I-GALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGE 273 (423)
T ss_dssp EEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSS--C-EEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHH
T ss_pred EEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCC--e-EEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHH
Confidence 99999932 3345556689999999999988776 5 88888776554443321100 0111221 1122222 2
Q ss_pred HHccC-CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013210 292 LSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 369 (447)
Q Consensus 292 ~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l 369 (447)
++..+ ..+....+++.++++++.+.|++++ .++..+... +.+++++|.+++.. ...+.+.|
T Consensus 274 al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-~~~l~~~l 336 (423)
T 3lvm_A 274 AYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH----------------GAPNILNVSFNYVE-GESLIMAL 336 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT----------------BCTTEEEEEETTSC-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc----------------cCCCeEEEEeCCCC-HHHHHHHH
Confidence 22221 2245666778899999999998874 455543211 23458888886432 45666666
Q ss_pred hcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 370 QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 370 ~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.. +.++.|..+ ......+......+|++ .+.||||++ ...+++.++.+.++|+++
T Consensus 337 ~~------i~v~~g~~~--------~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~ 395 (423)
T 3lvm_A 337 KD------LAVSSGSAC--------TSASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVRKS 395 (423)
T ss_dssp TT------EECBCCCC-------------CCCCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred hh------heeccCccc--------cCCCccccHHHHHhCCCccccCceEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 64 466666332 22222333455556665 489999999 766666666655555443
No 24
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.98 E-value=2.3e-31 Score=265.60 Aligned_cols=322 Identities=15% Similarity=0.122 Sum_probs=230.3
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh---cCCCCeEEEeCCCc
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL---CSSGGHVVAARTLY 148 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l---~~~gd~Vi~~~~~y 148 (447)
+.+.+.+...++||++.|.|++...+...++++.+|+++|.+ .++||+||++++.++++++ +++||+|+++.++|
T Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~ 123 (406)
T 3cai_A 44 TTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDD 123 (406)
T ss_dssp HHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSC
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCcc
Confidence 666666666566776667777666778899999999999985 5999999999999999887 78899999999999
Q ss_pred hhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEe
Q 013210 149 GGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD 222 (447)
+++...+.....+ .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|+++|+++|+|
T Consensus 124 ~~~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 201 (406)
T 3cai_A 124 EANIAPWLRAAHR-YGAKVKWAEVDIETGELPTWQWESLI-SKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVD 201 (406)
T ss_dssp GGGTHHHHHHHHH-HBCEEEEECCCTTTCCCCGGGHHHHC-CTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHh-cCCeEEEEecCcccCCcCHHHHHHHh-CCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEE
Confidence 9987666433222 58888888875 889999999 778999999999999999999999999999999999999
Q ss_pred CCCC--CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh------hhhhcCCCcc-HHHH-HHH
Q 013210 223 NTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG------ALMLLGPTMN-PKVA-FEL 292 (447)
Q Consensus 223 ~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~------~~~~~g~~~~-~~~a-~~~ 292 (447)
++|+ ....+...+++|+++.|+||++| ++ +||+++.++++++.+...... .....++... ...+ ..+
T Consensus 202 ~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~a 278 (406)
T 3cai_A 202 HSAAAPYRLLDIRETDADVVTVNAHAWGG-PP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVAS 278 (406)
T ss_dssp CTTTTTTCCCCHHHHCCSEEEEEGGGGTS-CS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHH
T ss_pred cccccCCCCCCchhcCCCEEEeehhhhcC-CC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHH
Confidence 9993 22344444589999999999987 44 533999999887766433210 0001222211 1111 112
Q ss_pred HccCC----------------cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 293 SERIP----------------HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 293 ~~~~~----------------~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
+..+. .+....++..++++++.+.|++.+ .++..|. . ..+++++|.
T Consensus 279 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~---------------~~~~~~~~~ 341 (406)
T 3cai_A 279 IEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRP--E---------------AQIPVVSFA 341 (406)
T ss_dssp HHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCC--S---------------SBCSEEEEE
T ss_pred HHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCc--c---------------ccCCEEEEE
Confidence 22111 245566778899999999998874 3544332 0 234589999
Q ss_pred eCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC--CCeEEEEeCCCCCHHHHHHHHH
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS--AGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~--~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
+++. ....+.+.|... | +.++.|.. +.....+|.+ .+.+|||++ ..++++.++.+.
T Consensus 342 ~~~~-~~~~~~~~L~~~---g-i~v~~g~~----------------~~~~~~~g~~~~~~~iRis~~-~~~t~e~i~~~~ 399 (406)
T 3cai_A 342 VHKV-PADRVVQRLADN---G-ILAIANTG----------------SRVLDVLGVNDVGGAVTVGLA-HYSTMAEVDQLV 399 (406)
T ss_dssp ETTB-CHHHHHHHHHHT---T-EECEECCS----------------CHHHHHHTTTTTTCCEEEECC-TTCCHHHHHHHH
T ss_pred ECCc-CHHHHHHHHHHC---C-cEEecCCh----------------HHHHHHcCCCCCCCeEEEEee-cCCCHHHHHHHH
Confidence 8742 245677777642 3 45565531 1112233443 478999999 888888899988
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|+++
T Consensus 400 ~~l~~~ 405 (406)
T 3cai_A 400 RALASL 405 (406)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 888754
No 25
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.98 E-value=1.6e-30 Score=254.74 Aligned_cols=281 Identities=15% Similarity=0.206 Sum_probs=212.2
Q ss_pred CCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 97 FNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
..+...++++.+|+++|. +.+++|+||++|+++++++++++||+|+++.|.|+++...+. ..|.++.+++.+
T Consensus 49 ~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~ 123 (354)
T 3ly1_A 49 AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAK-----IAGMKVTKVKMLD 123 (354)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECCCT
T ss_pred CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHH-----HcCCEEEEecCCC
Confidence 456678999999999995 569999999999999999999999999999999999887763 268899998877
Q ss_pred ----CHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc---------cCC-C
Q 013210 174 ----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP---------ARL-G 236 (447)
Q Consensus 174 ----d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~---------~~~-g 236 (447)
|+++|++++++ +++++|++++|+||||.+.|++++.++++. +|+++|+|++|+.+.+.. ... +
T Consensus 124 ~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 203 (354)
T 3ly1_A 124 NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAE 203 (354)
T ss_dssp TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCS
T ss_pred CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCC
Confidence 99999999932 789999999999999999999888888887 999999999996554321 122 6
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
.++++.|+||++|++|.|+ ||++.++++++.+...... ...+.+.+.++..++...+.+..+.+++.++++++.+.
T Consensus 204 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 279 (354)
T 3ly1_A 204 NIILLKTFSKIHAMAGMRV-GYAVAHPTVIALMGRYVAG---EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKA 279 (354)
T ss_dssp SEEEEEESSSTTCCGGGCC-EEEECCHHHHHHHGGGTTC---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeChhhccChhhhh-eeeecCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999899998 9999999998888766552 22222333333333433344666777889999999999
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccccc
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
|++++..+. | +.|.++++.++. ....+.+.|... | +.++ |...
T Consensus 280 l~~~~~~~~-~-------------------~~~~~~~~~~~~--~~~~~~~~l~~~---g-i~v~-g~~~---------- 322 (354)
T 3ly1_A 280 LEDLKLPYL-P-------------------SEGNFVFHQLVV--PLKDYQTHMADA---G-VLIG-RAFP---------- 322 (354)
T ss_dssp HHHHTCCBC-C-------------------CCSSEEEEECSS--CHHHHHHHHHHT---T-EECC-CCCT----------
T ss_pred HHHCCCeEC-C-------------------CCceEEEEECCC--CHHHHHHHHHHC---C-EEEe-ecCC----------
Confidence 988765443 2 135688999875 245677777653 3 4555 5221
Q ss_pred CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 397 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 397 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+ .++.+|||++ . ++.++.+.++|+++.
T Consensus 323 ------------~-~~~~iRis~~-~---~~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 323 ------------P-ADNWCRISLG-T---PQEMQWVADTMREFR 349 (354)
T ss_dssp ------------T-CTTEEEEECC-C---HHHHHHHHHHHHHHH
T ss_pred ------------C-CCCEEEEEcC-C---HHHHHHHHHHHHHHH
Confidence 1 2578999999 3 344555555555543
No 26
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.98 E-value=7.6e-30 Score=254.12 Aligned_cols=296 Identities=15% Similarity=0.139 Sum_probs=218.9
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 92 ~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.+.....+..+++++.+++++|.+.+++|+||++|+.+++++++++||.|+++.|.|+++...+. ..|.++..++
T Consensus 81 ~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~-----~~g~~~~~v~ 155 (398)
T 3a2b_A 81 RFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSR-----LSFSKVIKYG 155 (398)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHH-----HSSSEEEEEC
T ss_pred CcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHH-----HcCCceEEeC
Confidence 33334457789999999999999999999999999999999999999999999999999987763 2688999999
Q ss_pred CCCHHHHHHhhccC---CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC-C----CCe
Q 013210 172 ISDHEMVNSAIVQG---RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR-L----GAD 238 (447)
Q Consensus 172 ~~d~~~l~~~i~~~---~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-----~~~-~----g~d 238 (447)
..|+++|+++++.. ++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.+. ... . ++|
T Consensus 156 ~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~d 235 (398)
T 3a2b_A 156 HNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVD 235 (398)
T ss_dssp TTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCS
T ss_pred CCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCe
Confidence 88999999998332 7999999999999999999999999999999999999999544321 111 1 259
Q ss_pred EEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHH-HHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013210 239 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV-AFELSERIPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 239 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~-a~~~~~~~~~l~~~~~~~~~~~~~l~~~L 317 (447)
+++.|+||+++++| ||+++++++++.+.............++.+.+ +..++...+++....+++.++++++.+.|
T Consensus 236 i~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 311 (398)
T 3a2b_A 236 LIMGTFSKSLASLG----GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQL 311 (398)
T ss_dssp EEEEESSSTTCSSC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCC----cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999765 89999999988887642212112233333332 22333333333456677889999999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccC
Q 013210 318 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 318 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
++.+.++..| .|.++++.++.......+.+.|... | +.+..|..+..
T Consensus 312 ~~~g~~~~~~--------------------~g~~~~~~~~~~~~~~~l~~~l~~~---g-i~v~~~~~~~~--------- 358 (398)
T 3a2b_A 312 LDHGFDLGAT--------------------ESPILPIFIRSNEKTFWVTKMLQDD---G-VFVNPVVSPAV--------- 358 (398)
T ss_dssp HHTTCCBCSC--------------------CSSEEEEECCCHHHHHHHHHHHHHT---T-EECEEECTTTS---------
T ss_pred HhcCCCcCCC--------------------CCCEEEEEcCCHHHHHHHHHHHHHC---C-cEEEeeCCCCC---------
Confidence 9876544321 2569999998655567788887753 3 45555522110
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
...++.+|||++ ...+++.++.+.++|+++.+
T Consensus 359 -----------~~~~~~iRis~~-~~~~~e~i~~~~~~l~~~l~ 390 (398)
T 3a2b_A 359 -----------PAEESLIRFSLM-ATHTYDQIDEAIEKMVKVFK 390 (398)
T ss_dssp -----------CGGGCEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCceEEEEEe-CCCCHHHHHHHHHHHHHHHH
Confidence 012478999999 76667777777777665543
No 27
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.98 E-value=5.2e-31 Score=260.55 Aligned_cols=334 Identities=12% Similarity=0.123 Sum_probs=228.2
Q ss_pred ccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCC
Q 013210 67 TFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC----SSGG 139 (447)
Q Consensus 67 t~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~----~~gd 139 (447)
++..+.+ +++.+.+...++|+.+.|.+++...+...++++.+|+++|.+ .+++|+||++|+.++++++. ++||
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd 89 (382)
T 4eb5_A 10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGK 89 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCC
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCC
Confidence 3444455 777777766667776656666555677899999999999976 69999999999999999987 8999
Q ss_pred eEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh
Q 013210 140 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 214 (447)
Q Consensus 140 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~ 214 (447)
+|+++.++|+++...+. .+.. .|.++++++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|++
T Consensus 90 ~Vl~~~~~~~~~~~~~~-~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 166 (382)
T 4eb5_A 90 HILVSAVEHMSVINPAK-FLQK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHANNEIGTIQPVEEISEVLAG 166 (382)
T ss_dssp EEEEETTCCHHHHHHHH-HHTT-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHTT
T ss_pred EEEECCCcchHHHHHHH-HHHh-CCcEEEEeccCCCCccCHHHHHHHh-cCCCeEEEEeccCCCccccCCHHHHHHHHHH
Confidence 99999999999887763 2333 68899888863 899999999 6789999999999999999999999999999
Q ss_pred cCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh----hhhhcCCCc-cHH
Q 013210 215 KGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----ALMLLGPTM-NPK 287 (447)
Q Consensus 215 ~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~----~~~~~g~~~-~~~ 287 (447)
+|++ |+|++|+. ...+...+++|+++.|+||++|++| + |+++.+++. .+.....+ .....++.. ...
T Consensus 167 ~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (382)
T 4eb5_A 167 KAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEA--KLQPVILGGGQENGLRSGSENVPSI 240 (382)
T ss_dssp SSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSS--C-EEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHH
T ss_pred CCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCc--e-EEEEEcccc--ccCceecCCCccccccCCCccHHHH
Confidence 9999 99999942 2223233478999999999988766 4 777665542 11111100 001122222 122
Q ss_pred HH-HHHHccC-CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013210 288 VA-FELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 364 (447)
Q Consensus 288 ~a-~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~ 364 (447)
.+ ..++..+ +.+....+++.++++++.+.|++++ .++..|. . ...+++++|.+++. ....
T Consensus 241 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~-~~~~ 303 (382)
T 4eb5_A 241 VGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHP--E--------------KRLPNNVNVRFSYI-EGES 303 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCS--S--------------SBCTTEEEEEETTS-CHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCc--c--------------cCCCCEEEEEeCCc-CHHH
Confidence 21 1222211 2345566778889999999998863 3443321 0 01356889998732 2456
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.+.|... | +.++.|..++ .....++.....+|.+ ++.+|||++ ...+++.++.+.++|+++
T Consensus 304 ~~~~l~~~---g-i~v~~g~~~~--------~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 304 IVLSLDMA---G-IQASTGSACS--------SKTLQPSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp HHHHHHHH---T-CBCBCCCGGG--------TSSCCCCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC---C-EEEecccccc--------CCCCcccHHHHHcCCChhccCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 77777643 3 5666664322 1112233455556664 589999999 766566565555555443
No 28
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=1.1e-30 Score=257.20 Aligned_cols=274 Identities=14% Similarity=0.199 Sum_probs=210.1
Q ss_pred HHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-----CC
Q 013210 102 LNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SD 174 (447)
Q Consensus 102 ~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-----~d 174 (447)
.++++.+|+++|. +.+++|+||++|+++++++++++||+|+++.|+|+++...+. ..|.++.+++. .|
T Consensus 68 ~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d 142 (365)
T 3get_A 68 IELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK-----QCGAKCYKTQSITHNLDE 142 (365)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----HHTCEEEECSSSSCCHHH
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEecCCCCCCC
Confidence 6899999999995 569999999999999999999999999999999999887763 26888888886 36
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH--hcCCEEEEeCCCCCCC--------CCcc----CCCCeEE
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTFSPLV--------LSPA----RLGADVV 240 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~--~~gi~livD~~~~~~~--------~~~~----~~g~di~ 240 (447)
+++|++++ ++++++|++++|+||||.++|++++.++++ ++|+++|+|++|+.+. .+.. ..+.+++
T Consensus 143 ~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (365)
T 3get_A 143 FKKLYETH-KDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLY 221 (365)
T ss_dssp HHHHHHHT-TTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEE
T ss_pred HHHHHHHh-CCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEE
Confidence 88999999 788999999999999999999998888888 7799999999995433 1221 2367899
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+.|+||.+|++|.|+ |+++.++++++.+...+.. ...+.+.+.++..++...+++....+++.++++++.+.|+++
T Consensus 222 ~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 297 (365)
T 3get_A 222 LGTFSKLYGLGGLRI-GYGIANANIISAFYKLRAP---FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH 297 (365)
T ss_dssp EEESSSTTSCTTTCC-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeecchHhcCcchhe-EEEEcCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998 9998899999988876652 223333334444445443446677778899999999999988
Q ss_pred CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCC
Q 013210 321 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 400 (447)
Q Consensus 321 ~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~ 400 (447)
+.++. +. .|.++++.++.. +...+.+.|... | +.++.|..
T Consensus 298 g~~~~-~~-------------------~~~~~~~~~~~~-~~~~~~~~l~~~---g-i~v~~g~~--------------- 337 (365)
T 3get_A 298 NIKII-DS-------------------YTNFITYFFDEK-NSTDLSEKLLKK---G-IIIRNLKS--------------- 337 (365)
T ss_dssp TCEEC-CC-------------------SSSEEEEECSSS-CHHHHHHHHHTT---T-EECEECGG---------------
T ss_pred CCEEC-CC-------------------CCeEEEEECCCC-CHHHHHHHHHHC---C-EEEEECcc---------------
Confidence 66553 21 355889998743 356777777753 3 56565522
Q ss_pred CHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 401 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 401 ~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+ ++.+|||++ . ++.++.+.++|++
T Consensus 338 -------~~--~~~iRis~~-~---~~~i~~l~~~l~~ 362 (365)
T 3get_A 338 -------YG--LNAIRITIG-T---SYENEKFFTEFDK 362 (365)
T ss_dssp -------GT--CSEEEEECC-C---HHHHHHHHHHHHH
T ss_pred -------CC--CCEEEEEcC-C---HHHHHHHHHHHHH
Confidence 12 478999999 3 3445555555544
No 29
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=6.6e-30 Score=251.33 Aligned_cols=278 Identities=16% Similarity=0.202 Sum_probs=209.4
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
++...++++.+|++++. +.+++|+||++|+.+++++++++||+|+++.+.|+++...+. ..|.++.+++.+
T Consensus 66 ~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~ 140 (363)
T 3ffh_A 66 DGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNAL-----IEGAEVREIPLLQD 140 (363)
T ss_dssp ---CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHH-----HHTCEEEEEECCTT
T ss_pred CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHH-----HcCCEEEEecCCCC
Confidence 44568999999999996 569999999999999999999999999999999999887763 258888888876
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCCCCCC----Ccc----CCCCeEE
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVL----SPA----RLGADVV 240 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~----~~~----~~g~di~ 240 (447)
|+++|++++ ++++++|++++|+||||.+.|+++|.++++.+ |+++|+|++|+.+.. ... ..+.+++
T Consensus 141 ~~~d~~~l~~~i-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (363)
T 3ffh_A 141 GEHDLEGMLNAI-DEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLII 219 (363)
T ss_dssp SCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEE
T ss_pred CCcCHHHHHHhc-ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEE
Confidence 999999999 78899999999999999999999999999887 999999999964432 111 2356799
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh-
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK- 319 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~- 319 (447)
+.|+||.+|++|.|+ |+++.++++++.+...... ...+.+.+.++..++...+++....+++.++++++.+.|++
T Consensus 220 ~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 295 (363)
T 3ffh_A 220 TRTFSKIYGLASARV-GYGIADKEIIRQLNIVRPP---FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF 295 (363)
T ss_dssp EEESSSTTCCSSCCC-EEEEECHHHHHHHHHTCCS---CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeechhhhcCchhce-eeeecCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998 9998899999888776541 22233333334444443345666777889999999999998
Q ss_pred CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCC
Q 013210 320 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399 (447)
Q Consensus 320 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~ 399 (447)
.+..+. |. .|.++++.++. +...+.+.|... | +.++.|..
T Consensus 296 ~g~~~~-~~-------------------~~~~~~~~~~~--~~~~~~~~l~~~---g-i~v~~g~~-------------- 335 (363)
T 3ffh_A 296 EKVKLY-PA-------------------NGNFVLIDLGI--EAGTIFSYLEKN---G-YITRSGAA-------------- 335 (363)
T ss_dssp TTCEEC-CC-------------------CSSEEEEECSS--CHHHHHHHHHHT---T-EECEETTT--------------
T ss_pred CCceEC-CC-------------------CCeEEEEECCC--CHHHHHHHHHHC---C-eEEEeCcc--------------
Confidence 455543 22 35688999874 245677777653 3 45555522
Q ss_pred CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 400 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+. ++.+|||++ +++.++.+.++|++
T Consensus 336 --------~~~-~~~iRis~~----~~~~i~~~~~~l~~ 361 (363)
T 3ffh_A 336 --------LGF-PTAVRITIG----KEEDNSAVIALLEK 361 (363)
T ss_dssp --------TTC-TTEEEEECC----CHHHHHHHHHHHHH
T ss_pred --------CCC-CCeEEEECC----CHHHHHHHHHHHHH
Confidence 122 478999999 33445555555544
No 30
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=1.8e-30 Score=258.69 Aligned_cols=323 Identities=15% Similarity=0.202 Sum_probs=227.1
Q ss_pred HHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHh----cCCCCeEEEeC
Q 013210 74 ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQL----CSSGGHVVAAR 145 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l----~~~gd~Vi~~~ 145 (447)
+.+.+.+...++|+.. .+.++....+...++++.+|+++|. +.+++|+||++|+.++++++ +++||+|+++.
T Consensus 41 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~ 120 (406)
T 1kmj_A 41 DAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQ 120 (406)
T ss_dssp HHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET
T ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEec
Confidence 6666666555555543 3444444456778999999999998 56999999999999999998 88999999999
Q ss_pred CCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEE
Q 013210 146 TLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 220 (447)
Q Consensus 146 ~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~li 220 (447)
++|++....+...... .|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|++||+++|
T Consensus 121 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li 198 (406)
T 1kmj_A 121 MEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPTLF-DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198 (406)
T ss_dssp TCCGGGTHHHHHHHHH-HTCEEEEECBCTTSCBCGGGHHHHC-CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred ccchHHHHHHHHHHHh-CCCEEEEEecCCCCCcCHHHHHHHh-ccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEE
Confidence 9999876554333333 58888888764 789999999 7789999999999999999999999999999999999
Q ss_pred EeCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh-------------------hh
Q 013210 221 VDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL-------------------ML 279 (447)
Q Consensus 221 vD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~-------------------~~ 279 (447)
+|++|+.. ..+....++|+++.|+||.+|++| + |+++.++++++.+.....+.. ..
T Consensus 199 ~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (406)
T 1kmj_A 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFE 275 (406)
T ss_dssp EECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGC
T ss_pred EEchhhcCCCCCcccccCCCEEEEEchhccCCCC--c-EEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhcc
Confidence 99999432 223334479999999999998877 5 999999988887754332110 01
Q ss_pred cCC-CccHHHHH-HHHccCC--cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 280 LGP-TMNPKVAF-ELSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 280 ~g~-~~~~~~a~-~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
.++ .+.+.++. .++..+. .+....+++.++++++.+.|++. +.++..|. +.|+++.|
T Consensus 276 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~~~~~ 337 (406)
T 1kmj_A 276 AGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ------------------NRLGVIAF 337 (406)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT------------------TCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------------------CcCCEEEE
Confidence 122 22222222 2222221 34456677788999999999887 34554332 13568888
Q ss_pred EeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 355 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 355 ~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
.+++.+ ...+.+.|... | +.+..|..+. ......+|. ++.+|||++ ..++++.++.+.+
T Consensus 338 ~~~~~~-~~~~~~~l~~~---g-i~v~~g~~~~--------------~~~~~~~g~-~~~iRis~~-~~~t~~~i~~~~~ 396 (406)
T 1kmj_A 338 NLGKHH-AYDVGSFLDNY---G-IAVRTGHHCA--------------MPLMAYYNV-PAMCRASLA-MYNTHEEVDRLVT 396 (406)
T ss_dssp EETTCC-HHHHHHHHHHT---T-EECEEECTTC--------------HHHHHHTTC-SCEEEEECC-TTCCHHHHHHHHH
T ss_pred EECCCC-HHHHHHHHhhC---C-cEEEeccccc--------------hHHHHhcCC-CCeEEEEee-cCCCHHHHHHHHH
Confidence 886322 34566666643 3 4555553221 011112232 478999999 8878888888888
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
+|+++.
T Consensus 397 ~l~~~~ 402 (406)
T 1kmj_A 397 GLQRIH 402 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
No 31
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=3.6e-30 Score=257.80 Aligned_cols=327 Identities=16% Similarity=0.179 Sum_probs=228.0
Q ss_pred HHHHHhhcCCCCCCC-CCccccCCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHh----cCCCCeEEEeC
Q 013210 74 ETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQL----CSSGGHVVAAR 145 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l----~~~gd~Vi~~~ 145 (447)
+.+.+.+....+|+. +.+.|+....+...++++.+|+++|. +.+++|+||++|+.++++++ +++||+|+++.
T Consensus 46 ~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~ 125 (420)
T 1t3i_A 46 EKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTV 125 (420)
T ss_dssp HHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET
T ss_pred HHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECc
Confidence 566666655555554 34666654456678999999999998 67999999999999999998 88999999999
Q ss_pred CCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEE
Q 013210 146 TLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 220 (447)
Q Consensus 146 ~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~li 220 (447)
++|++....+...... .|.++.+++.+ |+++|++++ ++++++|++++++||+|.+.|+++|.++|+++|+++|
T Consensus 126 ~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li 203 (420)
T 1t3i_A 126 MEHHSNLVPWQMVAAK-TGAVLKFVQLDEQESFDLEHFKTLL-SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVL 203 (420)
T ss_dssp TCCGGGTHHHHHHHHH-HCCEEEEECBCTTSSBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEE
T ss_pred chhHHHHHHHHHHHHh-cCcEEEEeccCCCCCcCHHHHHHhh-CCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEE
Confidence 9999964333222222 58888888763 899999999 7789999999999999999999999999999999999
Q ss_pred EeCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh------------------hhc
Q 013210 221 VDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL------------------MLL 280 (447)
Q Consensus 221 vD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~------------------~~~ 280 (447)
+|++|+.. ..+...+++|+++.|+||.+|++| + |+++.++++++.+.....+.. ...
T Consensus 204 ~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (420)
T 1t3i_A 204 VDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG--I-GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEA 280 (420)
T ss_dssp EECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCC
T ss_pred EEhhhccCCccCchhhcCCCEEEEehhhhcCCCc--e-EEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccC
Confidence 99999432 223344579999999999998777 4 999999988877754332110 011
Q ss_pred CC-CccHHHHHH-HHccCC--cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 281 GP-TMNPKVAFE-LSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 281 g~-~~~~~~a~~-~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
+. ...+..+.. ++..+. .+....+++.++++++.+.|++. +.++..|.... .+.|++++|.
T Consensus 281 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--------------~~~~~~~~~~ 346 (420)
T 1t3i_A 281 GTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH--------------GDRAALASFN 346 (420)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG--------------SCBCSEEEEE
T ss_pred CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccc--------------cccCCEEEEE
Confidence 22 222222222 222221 24556777889999999999987 44655442000 0146789998
Q ss_pred eCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+++. ....+.+.|... | +.+..|..+.. .....+|. ++.+|||++ ...+++.++.+.++
T Consensus 347 ~~~~-~~~~~~~~l~~~---g-i~v~~~~~~~~--------------~~~~~~g~-~~~iRis~~-~~~~~~~i~~~~~~ 405 (420)
T 1t3i_A 347 VAGL-HASDVATMVDQD---G-IAIRSGHHCTQ--------------PLHRLFDA-SGSARASLY-FYNTKEEIDLFLQS 405 (420)
T ss_dssp ETTB-CHHHHHHHHHTT---T-EECBCSCTTCH--------------HHHHHTTC-CCCEEEECC-TTCCHHHHHHHHHH
T ss_pred ECCC-CHHHHHHHHHHC---C-eEEeeccccch--------------HHHHhcCC-CCeEEEecC-CCCCHHHHHHHHHH
Confidence 8742 245666777653 3 45555532210 11111232 578999999 87777777777777
Q ss_pred HHHhh
Q 013210 436 LSRMQ 440 (447)
Q Consensus 436 l~~~~ 440 (447)
|+++.
T Consensus 406 l~~~~ 410 (420)
T 1t3i_A 406 LQATI 410 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 32
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.97 E-value=1.8e-31 Score=265.74 Aligned_cols=336 Identities=14% Similarity=0.098 Sum_probs=221.8
Q ss_pred ccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCC
Q 013210 67 TFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC----SSGG 139 (447)
Q Consensus 67 t~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~----~~gd 139 (447)
+++.+.+ +.+.+.+...++||.+.|.+++...+..+++++.+|+++|++ .+++|+||++|+.+++++++ ++||
T Consensus 30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd 109 (400)
T 3vax_A 30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGR 109 (400)
T ss_dssp SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCC
Confidence 3433444 667776666667777777777777788899999999999985 59999999999999999987 8899
Q ss_pred -eEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 140 -HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 140 -~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
+|+++.++|+++...+... .+ .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|+
T Consensus 110 ~~Vl~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~la~ 186 (400)
T 3vax_A 110 RHIITSAIEHKAVLEPLEHL-AG-RGFEVDFLTPGPSGRISVEGVMERL-RPDTLLVSLMHVNNETGVIQPVAELAQQLR 186 (400)
T ss_dssp CEEEEETTSCHHHHHHHHHH-HT-TTCEEEEECCCTTCCCCHHHHHTTC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHT
T ss_pred CEEEECccccHhHHHHHHHH-Hh-cCCeEEEEccCCCCCcCHHHHHHhc-CCCceEEEEECCCCCceeeCcHHHHHHHHH
Confidence 9999999999988877443 33 68899998876 899999999 778999999999999999999999999999
Q ss_pred hcCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCccccCCCCeeEEEEE-cCh-HHH---HHHHHHhhh---hhhhcCCC
Q 013210 214 DKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVC-GPA-NLV---NSMMDLHQG---ALMLLGPT 283 (447)
Q Consensus 214 ~~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~-~~~-~~~---~~l~~~~~~---~~~~~g~~ 283 (447)
++|+++|+|++|+. ...+...+ +|+++.|+||++|+.| + |+++ .++ ++. ..+.....+ .......+
T Consensus 187 ~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (400)
T 3vax_A 187 ATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKG--V-GALVTRRREEMDDERVPLEPIMFGGGQERKLRPGT 262 (400)
T ss_dssp TSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSS--C-EEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSC
T ss_pred hcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCc--e-EEEEEecchhccccccccCceecCCCceeeeecCC
Confidence 99999999999942 22333344 8999999999888666 4 6666 544 111 111111100 00011222
Q ss_pred ccHH--HHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013210 284 MNPK--VAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 359 (447)
Q Consensus 284 ~~~~--~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 359 (447)
.+.. .+. .++.. .+.+....+++.++++++.+.|+..+.++..|... +.+++++|.+++.
T Consensus 263 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 326 (400)
T 3vax_A 263 LPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDH----------------VVPHILNLSFEDV 326 (400)
T ss_dssp CCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTS----------------BCTTEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCccc----------------CCCCEEEEEeCCC
Confidence 2222 211 12211 12356677778889999999998223455433210 2355889988743
Q ss_pred HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEe-CCCCCHHHHHHHHHH
Q 013210 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSV-GYLGTLDQRWSQFEK 434 (447)
Q Consensus 360 ~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~-g~~~~~~~~i~~l~~ 434 (447)
+...+.+.|. .+ +.++.|..+.. ....+++....+|++ ++.||||+ | ...+++.++.+.+
T Consensus 327 -~~~~l~~~L~-~g----i~v~~g~~~~~--------~~~~~~~~~~~~g~~~~~~~~~iRls~~~-~~~t~e~i~~~~~ 391 (400)
T 3vax_A 327 -DAEAFLVTLK-DL----VAVATGSASTS--------ASFTPSHVLRAMGLPEEAASKSLRFSWTP-GQATDLDVEELAR 391 (400)
T ss_dssp -CHHHHHHHHH-HH----HHHTTTTEEEE--------EEECCHHHHHTTTCCHHHHTSEEEEEEEE-C------------
T ss_pred -CHHHHHHHHh-cC----cEEEecccccC--------CCCCccHHHHHcCCCccccCceEEEEccC-CCCCHHHHHHHHH
Confidence 2456677776 54 67777744322 222344555666776 48999999 8 7777787888877
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
+|+++.
T Consensus 392 ~l~~~~ 397 (400)
T 3vax_A 392 GVAKLK 397 (400)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 777653
No 33
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=2.3e-29 Score=249.37 Aligned_cols=289 Identities=12% Similarity=0.102 Sum_probs=215.5
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
..+...++++.+++++|.+..+++++|++|+..++++++++||.|+++.+.|+.+...+. ..|.++..++..|++
T Consensus 82 ~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~ 156 (384)
T 1bs0_A 82 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS-----LSPSQLRRFAHNDVT 156 (384)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----TSSSEEEEECTTCHH
T ss_pred ChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHH-----HcCCCEEEeCCCCHH
Confidence 457788999999999999889999999999999999999999999999999998887763 368899999988999
Q ss_pred HHHHhhccC--CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC--------ccCCCCeEEEeCCCc
Q 013210 177 MVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS--------PARLGADVVVHSISK 246 (447)
Q Consensus 177 ~l~~~i~~~--~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~--------~~~~g~di~~~S~sK 246 (447)
+|++++++. ++++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+.+. ....+.|+++.|+||
T Consensus 157 ~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK 236 (384)
T 1bs0_A 157 HLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGK 236 (384)
T ss_dssp HHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSS
T ss_pred HHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccc
Confidence 999988432 3889999999999999999999999999999999999999433221 112358999999999
Q ss_pred cccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhc-CCCccHHHHHHHHccCC--cHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 247 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLL-GPTMNPKVAFELSERIP--HLGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~-g~~~~~~~a~~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
+++++| |++++++++++.+........... .+.....++..++..+. ......+++.++++++.+.|++++.+
T Consensus 237 ~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 312 (384)
T 1bs0_A 237 GFGVSG----AAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFT 312 (384)
T ss_dssp TTSSCC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred hhhccC----cEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999654 999999999888876432111111 12222222233333333 34566778899999999999887665
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 324 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
+. +. .|+++++.++.......+.+.|... | +.+..|.. +..
T Consensus 313 ~~-~~-------------------~~~~~~~~~~~~~~~~~l~~~l~~~---g-i~v~~~~~------~~~--------- 353 (384)
T 1bs0_A 313 LA-DS-------------------CSAIQPLIVGDNSRALQLAEKLRQQ---G-CWVTAIRP------PTV--------- 353 (384)
T ss_dssp EC-SC-------------------CSSBCCEEEESHHHHHHHHHHHHHT---T-EECCEECT------TSS---------
T ss_pred cc-CC-------------------CCCEEEEEeCCHHHHHHHHHHHHHC---C-cEEEeecC------CCC---------
Confidence 43 21 3557888887555567788887753 3 45554421 100
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 404 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
....+.+|||++ ...+++.++.+.++|+++
T Consensus 354 -----~~~~~~~Ri~~~-~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 354 -----PAGTARLRLTLT-AAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -----CTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred -----CCCCceEEEEEc-CCCCHHHHHHHHHHHHhh
Confidence 112478999999 887888888888888764
No 34
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.97 E-value=1.1e-29 Score=252.02 Aligned_cols=295 Identities=15% Similarity=0.110 Sum_probs=210.2
Q ss_pred ccccCCCCchHHHHHHHHHHHhC----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
+.|+....+..+.+++.+++.+| .+.+++|+||++|+++++++++++||+|+++.++|+++...+. ..|.+
T Consensus 58 ~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~ 132 (391)
T 3dzz_A 58 FGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIE-----GNGRR 132 (391)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHH-----HTTCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHH-----HcCCE
Confidence 44555545556667777777766 4569999999999999999999999999999999999887773 26788
Q ss_pred EEEeCC--------CCHHHHHHhhccCCceEEEEEcCCCCCccc---cCHHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013210 167 TTFVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLS---- 231 (447)
Q Consensus 167 ~~~v~~--------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~~~~---- 231 (447)
+..++. .|+++|+++++++++++|++++|+||||.+ .++++|+++|++||+++|+|++|+.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 212 (391)
T 3dzz_A 133 VISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDI 212 (391)
T ss_dssp EEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred EEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCc
Confidence 888776 489999999943789999999999999999 56889999999999999999999654332
Q ss_pred --ccCCC---Ce--EEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHH
Q 013210 232 --PARLG---AD--VVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLR 302 (447)
Q Consensus 232 --~~~~g---~d--i~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~ 302 (447)
...++ .| +++.|+||++|++|.|+ |+++.+ +++++.+............+.+.+.++..++... +.+...
T Consensus 213 ~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 291 (391)
T 3dzz_A 213 TPAFTVDWDAKNWVVSLISPSKTFNLAALHA-ACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLREL 291 (391)
T ss_dssp CCGGGSCTTTGGGEEEEECSHHHHTCTTTCC-EEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHH
T ss_pred eehhhcCccccCcEEEEEeChhhccccchhh-eEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence 22222 34 99999999999899998 999887 8888888766442222334444444444444432 335667
Q ss_pred HHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-cccccccc
Q 013210 303 MKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQFGFM 378 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~-~~~~~g~~ 378 (447)
.+++.++++++.+.|++ . +..+..|. .+.++++.++.. .....+.+.|. .. | +
T Consensus 292 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~---g-i 348 (391)
T 3dzz_A 292 KQVLRDNFAYAREFLAKEVPEVKVLDSN-------------------ASYLAWVDISALGMNAEDFCKYLREKT---G-L 348 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSEECCCC-------------------BSSEEEEECGGGCSCHHHHHHHHHHHH---C-E
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEeccC-------------------ceEEEEEehhhcCCCHHHHHHHHHHhC---C-E
Confidence 77788999999999988 5 44554332 344677887631 23566777773 42 3 5
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.++.|..+ .. ..++.+|||++ . +++.++.+.+.|.+
T Consensus 349 ~v~~g~~~--------~~-------------~~~~~iRis~~-~--~~~~i~~~l~~l~~ 384 (391)
T 3dzz_A 349 IISAGNGY--------RG-------------NGHEFVRINLA-C--PKELVIDGMQRLKQ 384 (391)
T ss_dssp ECEESGGG--------CT-------------TGGGEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred EEeCchhh--------CC-------------CCCCEEEEEec-C--CHHHHHHHHHHHHH
Confidence 66655321 10 12478999999 5 33444444444433
No 35
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=2.5e-29 Score=250.09 Aligned_cols=312 Identities=13% Similarity=0.179 Sum_probs=226.2
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHA 153 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~ 153 (447)
+.+.+.+.. ++.+...+.|.....+...++++.+++++|.+..+++++|++|+..++++++++||.|+++.++|+++..
T Consensus 64 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~ 142 (399)
T 3tqx_A 64 KTAQTVVEQ-YGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIID 142 (399)
T ss_dssp HHHHHHHHH-HCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH
T ss_pred HHHHHHHHH-hCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHH
Confidence 444444433 3333333444444567789999999999999988888899999999999999999999999999999887
Q ss_pred HHHhhcCcccCeeEEEeCCCCHHHHHHhhcc-----CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-C
Q 013210 154 LLTHFFPRACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P 227 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~ 227 (447)
.+. ..|.++..++..|+++|+++++. .++++|++++|+||||.+.|+++|.++|++||+++|+|++|+ +
T Consensus 143 ~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~ 217 (399)
T 3tqx_A 143 GIR-----LCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVG 217 (399)
T ss_dssp HHH-----SCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred HHH-----HcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccc
Confidence 763 36889999988899999988832 179999999999999999999999999999999999999993 3
Q ss_pred CC-CC------ccC--CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH---HHHHcc
Q 013210 228 LV-LS------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA---FELSER 295 (447)
Q Consensus 228 ~~-~~------~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a---~~~~~~ 295 (447)
+. .. ... .+.|+++.|+||++++ .+ |||+++++++++.+........ .+++.++..+ ...+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g--~~-gG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 292 (399)
T 3tqx_A 218 FIGENGRGTPEYCGVADRVDILTGTLGKALGG--AS-GGYTSGHKEIIEWLRNRSRPYL--FSNTVAPVIVATSLKVLEL 292 (399)
T ss_dssp TSSTTSCCHHHHHTCTTCCSEEEEESSSSSCS--SC-CEEEEECHHHHHHHHHHCHHHH--SSCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCchHHhhCCCCCCcEEEecchHhccc--Cc-eEEEEcCHHHHHHHHHhCccee--ccCCCcHHHHHHHHHHHHH
Confidence 32 11 111 1579999999999992 23 4999999999988876543221 2223333322 222322
Q ss_pred C-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccc
Q 013210 296 I-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQ 374 (447)
Q Consensus 296 ~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~ 374 (447)
. +......+++.++++++.+.|++.+.++. + ..|+++++.++.......+.+.|...
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~-- 350 (399)
T 3tqx_A 293 LKTEGPQLRKQLQENSRYFRAGMEKLGFQLV-P-------------------GNHPIIPVMLGDAQLATNMADHLLQE-- 350 (399)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHTCCBC-C-------------------CSSSEEEEEEECHHHHHHHHHHHHHT--
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHcCCCcC-C-------------------CCCCEEEEEeCCHHHHHHHHHHHHHC--
Confidence 2 34566777889999999999988765443 2 24669999998766677888888763
Q ss_pred cccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 375 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 375 ~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
| +.+..+.. +.. ...++.+|||++ ...+++.++.+.++|+++.+
T Consensus 351 -g-i~v~~~~~------~~~--------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~ 394 (399)
T 3tqx_A 351 -G-IYVVGFSY------PVV--------------PMGKARIRVQMS-AVHTQQQLDRAIEAFGQVGK 394 (399)
T ss_dssp -T-EECCEECT------TTS--------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -C-CEEeeeCC------CCC--------------CCCCceEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence 3 34332211 100 112468999999 77777777777777776544
No 36
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=2.7e-29 Score=252.78 Aligned_cols=291 Identities=14% Similarity=0.106 Sum_probs=216.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
..+...++++.|++++|.+.+++++||++|+..++++++++||.|+++.+.|+++...+. ..|.++..++..|++
T Consensus 107 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~-----~~g~~~~~~~~~d~~ 181 (427)
T 2w8t_A 107 TFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQ-----QGNAEIVRFRHNSVE 181 (427)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHH-----HSCSEEEEECTTCHH
T ss_pred CcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHH-----HcCCeeEEeCCCCHH
Confidence 356778999999999999999999999999999999999999999999999999887763 257888888888999
Q ss_pred HHHHhhccC---CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc--------c--CCCCeEEEeC
Q 013210 177 MVNSAIVQG---RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP--------A--RLGADVVVHS 243 (447)
Q Consensus 177 ~l~~~i~~~---~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~--------~--~~g~di~~~S 243 (447)
+|++++++. ++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.+.. . ..++|+++.|
T Consensus 182 ~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s 261 (427)
T 2w8t_A 182 DLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGT 261 (427)
T ss_dssp HHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred HHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEec
Confidence 999998332 78999999999999999999999999999999999999995543321 1 1257999999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHH-HHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
+||++|++| |++++++++++.+...........+.++...++. ..+..++.+....+++.++++++.+.|++.+.
T Consensus 262 ~sK~~g~~g----G~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 337 (427)
T 2w8t_A 262 FSKSVGTVG----GFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGF 337 (427)
T ss_dssp SSSTTCSCC----EEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhccCC----CEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999654 9999988887776543221111112222222222 33333344466778889999999999988766
Q ss_pred eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCH
Q 013210 323 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 402 (447)
Q Consensus 323 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~ 402 (447)
.+..+. +.|+++++.+++......+.+.|... | +.+..|.. +..
T Consensus 338 ~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~L~~~---G-i~v~~~~~------~~~-------- 381 (427)
T 2w8t_A 338 RLGTET------------------CDSAIVAVMLEDQEQAAMMWQALLDG---G-LYVNMARP------PAT-------- 381 (427)
T ss_dssp EESCSS------------------CCSSEEEEEESSHHHHHHHHHHHHHT---T-EECEEECT------TTS--------
T ss_pred cccCCC------------------CCCCEEEEEECCHHHHHHHHHHHHHC---C-eEEeeeCC------CCC--------
Confidence 554221 14569999998765677888888763 3 44444421 110
Q ss_pred HHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 403 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 403 ~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
....+.+|||++ ..++++.++.+.++|+++
T Consensus 382 ------~~~~~~lRi~~~-~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 382 ------PAGTFLLRCSIC-AEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp ------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred ------CCCCeEEEEEeC-CCCCHHHHHHHHHHHHHH
Confidence 012468999999 877777777777777655
No 37
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=1.4e-29 Score=248.91 Aligned_cols=282 Identities=14% Similarity=0.136 Sum_probs=209.0
Q ss_pred chHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 99 PTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
+...++++.+|+++|. +.+++|+||++|+++++++++++||+|+++.|+|+++...+. ..|.++.+++.++..
T Consensus 65 ~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~ 139 (360)
T 3hdo_A 65 ASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE-----VQGARVRTFGLTGDF 139 (360)
T ss_dssp SSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HHTCEEEEECBCTTS
T ss_pred CchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHH-----HCCCEEEEeeCCCCC
Confidence 3447899999999994 569999999999999999999999999999999999887763 268888888765321
Q ss_pred HHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-c----cCCCCeEEEeCCCccccCC
Q 013210 177 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-P----ARLGADVVVHSISKFISGG 251 (447)
Q Consensus 177 ~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-~----~~~g~di~~~S~sK~~g~~ 251 (447)
.+++..+..++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... . ...+.++++.|+||.+|++
T Consensus 140 ~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 219 (360)
T 3hdo_A 140 RIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLA 219 (360)
T ss_dssp SBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCT
T ss_pred CHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCC
Confidence 2222221235679999999999999999999999999999999999999654321 1 1236789999999999999
Q ss_pred CCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCC
Q 013210 252 ADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED 331 (447)
Q Consensus 252 g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~ 331 (447)
|.|+ ||++.++++++.+...... ...+.+.+.++..++...+++..+.+++.++++++.+.|++++..+. +.
T Consensus 220 G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~--- 291 (360)
T 3hdo_A 220 GMRI-GLAIARPEVIAALDKIRDH---YNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVI-PS--- 291 (360)
T ss_dssp TSCC-EEEECCHHHHHHHHHHSCS---CCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEC-CC---
T ss_pred ccce-eeEeeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEc-CC---
Confidence 9998 9999999999988876541 22333333344444444344667778889999999999998866543 21
Q ss_pred CchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC
Q 013210 332 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 411 (447)
Q Consensus 332 ~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~ 411 (447)
.|.++++.+++. +...+.+.|... | +.++.|+. + ..
T Consensus 292 ----------------~~~~~~~~~~~~-~~~~l~~~l~~~---g-i~v~~~~~------~-----------------~~ 327 (360)
T 3hdo_A 292 ----------------QGNYLFATPPDR-DGKRVYDGLYAR---K-VLVRHFSD------P-----------------LL 327 (360)
T ss_dssp ----------------SSSEEEEECTTC-CHHHHHHHHHHT---T-EECBCCCS------T-----------------TT
T ss_pred ----------------CccEEEEECCCC-CHHHHHHHHHHC---C-EEEEECCC------C-----------------CC
Confidence 456888888743 245677777653 3 44444311 0 12
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 412 AGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 412 ~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
++.+|||++ +++.++.|.++|+++.+
T Consensus 328 ~~~iRis~~----~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 328 AHGMRISIG----TREEMEQTLAALKEIGE 353 (360)
T ss_dssp TTSEEEECC----CHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEcC----CHHHHHHHHHHHHHHhc
Confidence 478999999 45667888888887754
No 38
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.97 E-value=2.6e-29 Score=250.44 Aligned_cols=313 Identities=13% Similarity=0.116 Sum_probs=222.6
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHA 153 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~ 153 (447)
+.+.+.+.. +++..+.+.|.....+...++++.+|+++|.+..+++++|++|+..++++++++||.|+++.+.|+++..
T Consensus 66 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~ 144 (401)
T 1fc4_A 66 AAAKAGMDS-HGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIID 144 (401)
T ss_dssp HHHHHHHHH-HCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH
T ss_pred HHHHHHHHH-hCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHH
Confidence 444444432 2333333344433467789999999999999888888999999999999999999999999999988876
Q ss_pred HHHhhcCcccCeeEEEeCCCCHHHHHHhhcc--C---CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CC
Q 013210 154 LLTHFFPRACNITTTFVDISDHEMVNSAIVQ--G---RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP 227 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~--~---~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~ 227 (447)
.+. ..|.++..++..|+++|+++++. + ++++|++++|+||||.+.|+++|.++|+++|+++|+|++| .+
T Consensus 145 ~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g 219 (401)
T 1fc4_A 145 GVR-----LCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVG 219 (401)
T ss_dssp HHH-----TSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTT
T ss_pred HHH-----HcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECccccc
Confidence 652 36889999988899999998832 1 7899999999999999999999999999999999999999 46
Q ss_pred CCCC-c------cC--CCCeEEEeCCCccc-cCCCCeeEEEEEcChHHHHHHHHHhhhhhhh-cCCCccHHHHHHHHccC
Q 013210 228 LVLS-P------AR--LGADVVVHSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQGALML-LGPTMNPKVAFELSERI 296 (447)
Q Consensus 228 ~~~~-~------~~--~g~di~~~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~-~g~~~~~~~a~~~~~~~ 296 (447)
+... . .. .++|+++.|+||++ ++. ||++++++++++.+.......... ..+...+.++..++..+
T Consensus 220 ~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~----gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 295 (401)
T 1fc4_A 220 FVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS----GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV 295 (401)
T ss_dssp TSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS----CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHcCCCcCCcEEEecchhhccCCC----CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHH
Confidence 5421 0 11 25799999999999 443 499999999988887654312111 11222222222222222
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 376 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g 376 (447)
.......+++.++++++.+.|++.+.++. | +.|+++++.+++......+.+.|... |
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~~---g 352 (401)
T 1fc4_A 296 EAGSELRDRLWANARQFREQMSAAGFTLA-G-------------------ADHAIIPVMLGDAVVAQKFARELQKE---G 352 (401)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHTTCCBC-C-------------------SSSSEEEEEEECHHHHHHHHHHHHHT---T
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHcCCccc-C-------------------CCCCEEEEEcCChHHHHHHHHHHHHC---C
Confidence 22345677788999999999998765443 2 24669999998655567788887753 3
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+.+..|..+ .. ....+.+|||++ ...+++.++.+.++|+++.+
T Consensus 353 -i~v~~~~~~------~~--------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~ 395 (401)
T 1fc4_A 353 -IYVTGFFYP------VV--------------PKGQARIRTQMS-AAHTPEQITRAVEAFTRIGK 395 (401)
T ss_dssp -EECCEECTT------SS--------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -cEEeeecCC------CC--------------CCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence 455544221 00 012468999999 77777777777777766543
No 39
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=2.1e-29 Score=250.04 Aligned_cols=252 Identities=23% Similarity=0.293 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+++++ | .+.+++|+||++|+++++++++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~ 144 (385)
T 1b5p_A 70 IPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-----FAGGVVVEVET 144 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEeec
Confidence 357888888776 3 2569999999999999999999999999999999999887763 25778877775
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCC--
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARL-- 235 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~-- 235 (447)
+ |+++|++++ ++++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.+.++ ...+
T Consensus 145 ~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 223 (385)
T 1b5p_A 145 LPEEGFVPDPERVRRAI-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP 223 (385)
T ss_dssp CGGGTTCCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT
T ss_pred CcccCCCCCHHHHHHhc-CCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC
Confidence 2 789999999 678999999999999999987 889999999999999999999665442 2233
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc----CCcHHHHHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER----IPHLGLRMKEHCHRAL 311 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~----~~~l~~~~~~~~~~~~ 311 (447)
+.++++.|+||.+|++|.|+ ||+++++++++.+...+... ....+.+.+.++..++.. .+++....+++.++++
T Consensus 224 ~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 301 (385)
T 1b5p_A 224 EHTLTVNGAAKAFAMTGWRI-GYACGPKEVIKAMASVSRQS-TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRD 301 (385)
T ss_dssp TTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEechhhcCCcccce-EEEEeCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 67899999999999999998 99999999988887665421 122233334334334432 2345556677888999
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
++.+.|++++.++..|. .|.++++.++. ..+...+.+.|... | +.+..|
T Consensus 302 ~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~~---g-v~v~~g 351 (385)
T 1b5p_A 302 LLLEGLTALGLKAVRPS-------------------GAFYVLMDTSPIAPDEVRAAERLLEA---G-VAVVPG 351 (385)
T ss_dssp HHHHHHHHHTCCBCCCS-------------------BTTEEEEECTTTCSSHHHHHHHHHHT---T-EECEES
T ss_pred HHHHHHHHCCCeecCCC-------------------eeEEEEEecCCCCCCHHHHHHHHHHC---C-eEEecc
Confidence 99999988755544332 34467777751 11245666666642 3 455555
No 40
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.97 E-value=4.9e-29 Score=244.84 Aligned_cols=275 Identities=15% Similarity=0.176 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 100 TVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
...++++.+|+++|.+ .+++|+|+++++.+++++++++| |+|+++.|+|+++...+. ..|.++..++.+
T Consensus 59 ~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~ 133 (356)
T 1fg7_A 59 QPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVECRTVPTLDNW 133 (356)
T ss_dssp SCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-----HHTCEEEECCCCTTS
T ss_pred cHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEeeCCCCC
Confidence 3578999999999864 69999999999999999999999 999999999999987763 257788887753
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHH---HHHHHhcCCEEEEeCCCCCCC--CCcc----CCCCeEEEe
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL---SRLAHDKGVTVVVDNTFSPLV--LSPA----RLGADVVVH 242 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I---~~la~~~gi~livD~~~~~~~--~~~~----~~g~di~~~ 242 (447)
|++++++++ + ++++|++++|+||||.+.|.++| +++|+ +|+++|+|++|..+. .+.. ..+.++++.
T Consensus 134 ~~d~~~l~~~i-~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (356)
T 1fg7_A 134 QLDLQGISDKL-D-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILR 210 (356)
T ss_dssp CCCHHHHHTSC-T-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred CCCHHHHHHHh-c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEe
Confidence 789999988 5 89999999999999999986555 55555 899999999995443 1221 236789999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc--HHHHHHHHHHHHHHHHHHHHhC
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
|+||++|++|.|+ ||+++++++++.+...+.. ...+.+.+.++..++..... +....+++.++++++.+.|+++
T Consensus 211 s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 286 (356)
T 1fg7_A 211 TLSKAFALAGLRC-GFTLANEEVINLLMKVIAP---YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI 286 (356)
T ss_dssp ESSSTTCCGGGCC-EEEEECHHHHHHHHHHSCS---SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchHhhcCchhhh-EEEEeCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999998 9999999999888876542 22233333333333332112 5556677889999999999987
Q ss_pred CC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc-cCccccccccccccCC
Q 013210 321 GL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSS 398 (447)
Q Consensus 321 ~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~-G~~~s~~~~~a~~~~~ 398 (447)
+. ....|. .|.++++.+++ ...+.+.|.. .| +.+.. |..+
T Consensus 287 ~~~~~~~~~-------------------~~~~~~~~~~~---~~~l~~~L~~---~g-I~v~~~g~~~------------ 328 (356)
T 1fg7_A 287 PCVEQVFDS-------------------ETNYILARFKA---SSAVFKSLWD---QG-IILRDQNKQP------------ 328 (356)
T ss_dssp TTEEEECCC-------------------SSSEEEEEETT---HHHHHHHHHH---TT-EECEECTTST------------
T ss_pred CCceEECCC-------------------CCeEEEEECCC---HHHHHHHHHH---CC-EEEEECCCCC------------
Confidence 63 222332 45688999872 4567777754 34 34443 4211
Q ss_pred CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 399 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 399 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
|. ++++|||++ . ++.++.+.++|+++
T Consensus 329 ----------~~-~~~iRis~~-~---~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 329 ----------SL-SGCLRITVG-T---REESQRVIDALRAE 354 (356)
T ss_dssp ----------TC-TTEEEEECC-C---HHHHHHHHHHHHTC
T ss_pred ----------CC-CCeEEEEeC-C---HHHHHHHHHHHHhh
Confidence 22 368999999 4 45677777777654
No 41
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.97 E-value=8.1e-30 Score=251.05 Aligned_cols=279 Identities=16% Similarity=0.182 Sum_probs=208.4
Q ss_pred CchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 98 NPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.+...++++.+|+++|. +.+++|+||++|+++++++++++||+|+++.+.|+++...+. ..|.++.+++.+
T Consensus 66 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~ 140 (367)
T 3euc_A 66 VPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQ-----FAGLEFVGVPLRA 140 (367)
T ss_dssp CCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHH-----TTTCEEEEEECCT
T ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEecCCC
Confidence 34568999999999998 679999999999999999999999999999999999877763 268888888754
Q ss_pred ----CHHHHHHhhccC-CceEEEEEcCCCCCccccC---HHHHHHHHHhc--CCEEEEeCCCCCCCCC-----ccCCCCe
Q 013210 174 ----DHEMVNSAIVQG-RTKVLYFESISNPTLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLS-----PARLGAD 238 (447)
Q Consensus 174 ----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~---l~~I~~la~~~--gi~livD~~~~~~~~~-----~~~~g~d 238 (447)
|+++|++++ ++ ++++|++++|+||||.+.+ +++|+++|++| |+++|+|++|+.+... ....+.+
T Consensus 141 ~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 219 (367)
T 3euc_A 141 DFTLDRGAMLAAM-AEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNL 219 (367)
T ss_dssp TSCCCHHHHHHHH-HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTE
T ss_pred CCCCCHHHHHHHh-hccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCE
Confidence 899999999 55 8999999999999999975 67788889999 9999999999655322 1233678
Q ss_pred EEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013210 239 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 239 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 318 (447)
+++.|+||+ +++|.++ ||++.++++++.+...... ...+.+.+.++..++...+++..+.+++.++++++.+.|+
T Consensus 220 i~~~s~sK~-~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (367)
T 3euc_A 220 LVMRTVSKL-GLAGIRL-GYVAGDPQWLEQLDKVRPP---YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMA 294 (367)
T ss_dssp EEEEECCCT-TSCSCCE-EEEEECHHHHHHHGGGCCS---SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhh-cccccCc-eeeeeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 8899998 9999999998888655441 2233333444444444433456677788999999999998
Q ss_pred hC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccC
Q 013210 319 KL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 319 ~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
++ +..+ .|. .|.++++.+++ ...+.+.|... | +.++.|..+ .
T Consensus 295 ~~~g~~~-~~~-------------------~~~~~~~~~~~---~~~l~~~l~~~---g-i~v~~~~~~--------~-- 337 (367)
T 3euc_A 295 AHGGVTV-FPS-------------------AANFLLARVPD---AAQTFDRLLAR---K-VLIKNVSKM--------H-- 337 (367)
T ss_dssp TSTTCEE-CCC-------------------SSSEEEEECSC---HHHHHHHHHTT---T-EECEECGGG--------C--
T ss_pred hCCCcEE-CCC-------------------CCeEEEEECCC---HHHHHHHHHHC---C-eEEEECCcc--------C--
Confidence 87 4453 232 45688888872 45677777653 3 455555321 0
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++.+|||++ . ++.++.+.++|+++
T Consensus 338 -----------~~~~~~iRis~~-~---~~~i~~~~~~l~~~ 364 (367)
T 3euc_A 338 -----------PLLANCLRVTVS-T---PEENAQFLEAFAAS 364 (367)
T ss_dssp -----------GGGTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred -----------CCCCCEEEEecC-C---HHHHHHHHHHHHHH
Confidence 112578999999 3 34455555555543
No 42
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=5.4e-29 Score=246.38 Aligned_cols=290 Identities=13% Similarity=0.111 Sum_probs=208.6
Q ss_pred CCchHHHHHHHHHHHhCCC--e-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh--HHHHHHhhcCcccCeeEEEeC
Q 013210 97 FNPTVLNLSRQMAALEGTE--A-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~--~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..+..+++++.+++++|.+ . +++|+||++|+.+++++++++||+|+++.++|++ +...+. . .|.++..++
T Consensus 51 ~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~ 125 (386)
T 2dr1_A 51 YRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVE----S-NGRKAVVLE 125 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHH----H-hCCceEEEe
Confidence 3567789999999999976 4 8999999999999999999999999999999998 544442 2 688888887
Q ss_pred C-----CCHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC--CCCccCCCCeEEEeC
Q 013210 172 I-----SDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHS 243 (447)
Q Consensus 172 ~-----~d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--~~~~~~~g~di~~~S 243 (447)
. .|+++|++++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++|+.. ..+...+++|+++.|
T Consensus 126 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s 205 (386)
T 2dr1_A 126 YEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSS 205 (386)
T ss_dssp CCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEE
T ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEe
Confidence 6 389999998843 57999999999999999999999999999999999999999433 234445688999999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHH----------------Hh-hhhhhhcCCC--ccHHHHHHHHccCC---cHHH
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMD----------------LH-QGALMLLGPT--MNPKVAFELSERIP---HLGL 301 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~----------------~~-~~~~~~~g~~--~~~~~a~~~~~~~~---~l~~ 301 (447)
+||++++++. + |+++.++++++.+.. .. ... ..++. ..+.++..++..+. .+..
T Consensus 206 ~sK~~~~~~g-~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~g~~~~ 281 (386)
T 2dr1_A 206 SQKAFGVPPG-L-AIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKES--TPSTPPMPQVFGINVALRIIEKMGGKEK 281 (386)
T ss_dssp TTSTTCCCSS-C-EEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSS--CSSCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccccCCCc-e-EEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCC--CCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999997643 5 999999988876631 11 101 12221 12222222332221 3556
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
..+++.++++++.+.|++++.++..|. . +..+.+++|.++.......+.+.|... | +.+.
T Consensus 282 ~~~~~~~~~~~l~~~L~~~g~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~ 341 (386)
T 2dr1_A 282 WLEMYEKRAKMVREGVREIGLDILAEP--G--------------HESPTITAVLTPPGIKGDEVYEAMRKR---G-FELA 341 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSSCT--T--------------CBCSSEEEEECCTTCCHHHHHHHHHHT---T-EECE
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeCcCc--c--------------ccCCceEEEEcCCCCCHHHHHHHHHHC---C-eEEe
Confidence 778889999999999998865554332 0 014669999987322356677777652 3 4555
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|.. + ..++.+|||++ ...+++.++.+.++|+++
T Consensus 342 ~~~~------~-----------------~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 375 (386)
T 2dr1_A 342 KGYG------S-----------------VKEKTFRIGHM-GYMKFEDIQEMLDNLREV 375 (386)
T ss_dssp ECCG------G-----------------GTTTEEEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred cCcc------c-----------------cCCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 4421 0 02478999999 755666666665555543
No 43
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.97 E-value=3.5e-29 Score=249.77 Aligned_cols=285 Identities=17% Similarity=0.148 Sum_probs=206.7
Q ss_pred CCchHHHHHHHHHHHhCC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 97 FNPTVLNLSRQMAALEGT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..+..+.+++.+++++|. +.+++|+||++|+..++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 80 ~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~ 154 (407)
T 3nra_A 80 DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEMVPVQ 154 (407)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHH-----HcCCEEEEee
Confidence 345667788888888886 679999999999999999999999999999999999887763 2577777776
Q ss_pred C-------C----CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------
Q 013210 172 I-------S----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------ 231 (447)
Q Consensus 172 ~-------~----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------ 231 (447)
. + |+++|++++ ++++++|++++|+||||.++| +++|+++|++||+++|+|++|+.+.+.
T Consensus 155 ~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~ 233 (407)
T 3nra_A 155 LDYVSADETRAGLDLTGLEEAF-KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTH 233 (407)
T ss_dssp BCCCSSCCSSCCBCHHHHHHHH-HTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCC
T ss_pred cccccccCcCCCcCHHHHHHHH-hhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCC
Confidence 5 1 899999999 668999999999999999998 899999999999999999999654322
Q ss_pred c-----cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC----CcHHHH
Q 013210 232 P-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLR 302 (447)
Q Consensus 232 ~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~----~~l~~~ 302 (447)
. ...+.++++.|+||.+|++|.|+ ||+++++++++.+...... .....+.....++...+ ..+...
T Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~a~~~~l~~~~~~~~~~ 308 (407)
T 3nra_A 234 LRAEAAVDAENVVTIMGPSKTESLSGYRL-GVAFGSRAIIARMEKLQAI----VSLRAAGYSQAVLRGWFDEAPGWMEDR 308 (407)
T ss_dssp GGGCTTSCGGGEEEEECSSSTTCCGGGCC-EEEEECHHHHHHHHHHHHH----HTSSSCHHHHGGGGGTTCCCTTHHHHH
T ss_pred hhhcCcccCCcEEEEeCcccccCCCeeeE-EEEEcCHHHHHHHHHHHhh----hccCCChHHHHHHHHHHhccchHHHHH
Confidence 1 12356799999999999999998 9999999999888776552 12222222222222222 346677
Q ss_pred HHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccc
Q 013210 303 MKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~v 380 (447)
.+++.++++++.+.|+++ +..+..|. .|.++++.++. ......+.+.|... .| +.+
T Consensus 309 ~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v 366 (407)
T 3nra_A 309 IARHQAIRDELLHVLRGCEGVFARTPQ-------------------AGSYLFPRLPKLAVAPAEFVKILRLQ--AG-VVV 366 (407)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCBCCCCS-------------------BSSEECCBCCCBSSCHHHHHHHHHHH--HC-EEC
T ss_pred HHHHHHHHHHHHHHHhcCCCceeccCC-------------------eeEEEEEeCCCCCCCHHHHHHHHHHh--CC-EEE
Confidence 788899999999999887 33443222 34577777764 22355666766431 23 455
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+.|..+. ....+.+|||++ . +++.++.+.++|.+
T Consensus 367 ~~g~~~~---------------------~~~~~~iRis~~-~--~~~~i~~~~~~l~~ 400 (407)
T 3nra_A 367 TPGTEFS---------------------PHTADSVRLNFS-Q--DHEAAVAAARRIVT 400 (407)
T ss_dssp EEGGGTC---------------------TTCTTBEEEECC-S--CHHHHHHHHHHHHH
T ss_pred eCchhhC---------------------CCCCCEEEEEeC-C--CHHHHHHHHHHHHH
Confidence 6553221 012578999999 6 34445544444443
No 44
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.97 E-value=4.2e-29 Score=248.16 Aligned_cols=284 Identities=17% Similarity=0.170 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|++++ .+.+++|+||++|+++++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~ 144 (391)
T 3h14_A 70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILR-----ALGLVPVDLPT 144 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeec
Confidence 3678888888763 3569999999999999999999999999999999999987763 26888888776
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCC-C
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARL-G 236 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~-g 236 (447)
+ |+++|+++ ++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+. ...+ +
T Consensus 145 ~~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 220 (391)
T 3h14_A 145 APENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTD 220 (391)
T ss_dssp CGGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCS
T ss_pred CcccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCC
Confidence 4 77777654 7899999999999999998 888999999999999999999655432 2222 5
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
.++++.|+||.+|++|.|+ ||++.++++++.+....... ...++.+.+.++..++...+.+....+++.++++++.+.
T Consensus 221 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 298 (391)
T 3h14_A 221 ECYVINSFSKYFSMTGWRV-GWMVVPEDQVRVVERIAQNM-FICAPHASQVAALAALDCDAELQANLDVYKANRKLMLER 298 (391)
T ss_dssp SSEEEEESSSTTCCTTSCC-EEEECCGGGHHHHHHHHHHT-TCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEechhccCCcccee-EEEEeCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999998 99999999998887665521 112222333333344443344666777889999999999
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
|++++.....+. ..|.++++.++. ..+...+.+.|... .| +.++.|..+..
T Consensus 299 l~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v~~g~~~~~------- 350 (391)
T 3h14_A 299 LPKAGFTRIAPP------------------DGAFYVYADVSDLTDDSRAFAAEILEK--AG-VAVTPGLDFDP------- 350 (391)
T ss_dssp HHHHTCCCBCCC------------------CBTTEEEEECTTTCSCHHHHHHHHHHH--HC-EECEEGGGTCT-------
T ss_pred HHHcCCCcccCC------------------CeeEEEEEecCccCCCHHHHHHHHHHH--CC-EEEcCchhhCC-------
Confidence 988765332221 134578888863 22355666665431 23 56666632210
Q ss_pred cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 396 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 396 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++.+|||++ . +++.++.+.+.|.++
T Consensus 351 -------------~~~~~~iRis~~-~--~~~~i~~~l~~l~~~ 378 (391)
T 3h14_A 351 -------------ERGAGTLRFSYA-R--ATADIEEGLDRLEAF 378 (391)
T ss_dssp -------------TTGGGEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred -------------CCCCCeEEEEec-C--CHHHHHHHHHHHHHH
Confidence 012578999999 6 334455554444443
No 45
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.97 E-value=4.2e-29 Score=247.76 Aligned_cols=295 Identities=13% Similarity=0.095 Sum_probs=210.4
Q ss_pred CccccCCCCchHHHHHHHHHHHhC----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCe
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI 165 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 165 (447)
.+.|+....+..+.+++.+++++| .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.
T Consensus 62 ~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~ 136 (391)
T 4dq6_A 62 IYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVK-----NNNR 136 (391)
T ss_dssp CCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHH-----HTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHH-----HcCC
Confidence 355666666777888888888887 3569999999999999999999999999999999999987773 2678
Q ss_pred eEEEeCCC---------CHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 166 TTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 166 ~~~~v~~~---------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
++.+++.+ |+++|++++ ++ +++|++++|+||||.+. ++++|+++|++||+++|+|++|+.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~d~~~l~~~l-~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~ 214 (391)
T 4dq6_A 137 ELIISPLQKLENGNYIMDYEDIENKI-KD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH 214 (391)
T ss_dssp EEEECCCEECTTSCEECCHHHHHHHC-TT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred eEEeeeeeecCCCceEeeHHHHHHHh-hc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC
Confidence 88887764 899999999 55 99999999999999995 5889999999999999999999655432
Q ss_pred ----ccCC-----CCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHH
Q 013210 232 ----PARL-----GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLG 300 (447)
Q Consensus 232 ----~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~ 300 (447)
...+ +.++++.|+||.+|++|.|+ |+++.++ ++++.+...........++.+.+.++..++... +.+.
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 293 (391)
T 4dq6_A 215 KHIPMASISKEFEKNTITCMAPTKTFNIAGLQS-SYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLE 293 (391)
T ss_dssp CCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred CccCHHHcCccccCcEEEEEechhhccCcccce-EEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHH
Confidence 1122 34599999999999899998 8888765 888888766542211122333333333333332 2355
Q ss_pred HHHHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccc
Q 013210 301 LRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~ 377 (447)
...+++.++++++.+.|++ . +..+..|. .+.++++.++. ......+.+.|... +|
T Consensus 294 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~--~g- 351 (391)
T 4dq6_A 294 SFLEYLESNIDFAIKYINENMPKLKVRKPE-------------------GTYLLWVDFSALGLSDEELESILVQK--GK- 351 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSEECCCS-------------------BSSEEEEECGGGCCCHHHHHHHHHHT--TC-
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEecCCC-------------------ccEEEEEEhhhcCCCHHHHHHHHHHh--CC-
Confidence 6677788999999999987 4 34544322 34466788863 12356777777652 24
Q ss_pred ccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 378 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 378 ~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+.++.|..+ . ...++.+|||++ . +++.++.+.++|++
T Consensus 352 i~v~~g~~~--------~-------------~~~~~~iRis~~-~--~~~~i~~~l~~l~~ 388 (391)
T 4dq6_A 352 VALNQGNSF--------G-------------IGGSGYQRINLA-C--PRSMLEEALIRIKN 388 (391)
T ss_dssp EECEEGGGG--------C-------------TTCTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred EEeeCchhh--------C-------------CCCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 455555221 1 012578999999 5 34445554444443
No 46
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.97 E-value=8.4e-29 Score=244.12 Aligned_cols=276 Identities=16% Similarity=0.185 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|++++ .+.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++
T Consensus 68 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~- 141 (370)
T 2z61_A 68 ILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIR-----FLGAKPVFCD- 141 (370)
T ss_dssp CHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEEC-
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeC-
Confidence 4678888888874 2569999999999999999999999999999999999887763 2688888888
Q ss_pred CCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC----CCCeEEEeC
Q 013210 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR----LGADVVVHS 243 (447)
Q Consensus 173 ~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-----~~~~----~g~di~~~S 243 (447)
.|+++|++++ ++++++|++++|+||||.+.|++ |.++|++||+++|+|++|+.+.+ +... .+.|+++.|
T Consensus 142 ~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s 219 (370)
T 2z61_A 142 FTVESLEEAL-SDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILING 219 (370)
T ss_dssp SSHHHHHHHC-CSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEE
T ss_pred CCHHHHHHhc-ccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEec
Confidence 7999999999 67899999999999999999999 99999999999999999965533 2222 268999999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC-----cHHHHHHHHHHHHHHHHHHHH
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~ 318 (447)
+||++|++|.|+ ||+++++++++.+...... ...+.+......+...++ ++....+++.++++++.+.|+
T Consensus 220 ~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 294 (370)
T 2z61_A 220 FSKLYAMTGWRI-GYVISNDEIIEAILKLQQN----LFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVK 294 (370)
T ss_dssp STTTTTCGGGCC-EEEECCHHHHHHHHHHHHH----HTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhccCCccceE-EEEEECHHHHHHHHHHHhh----cccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999899998 9999999998888776552 111222222222223333 234456678889999999998
Q ss_pred hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccCccccccccccccC
Q 013210 319 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 319 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~-~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
+++.++..|. .|.++++.++. +...+.+.|. .. | +.+..|..+..
T Consensus 295 ~~g~~~~~~~-------------------~~~~~~~~~~~--~~~~~~~~l~~~~---g-i~v~~g~~f~~--------- 340 (370)
T 2z61_A 295 DFGWEVNNPI-------------------GAYYVFPNIGE--DGREFAYKLLKEK---F-VALTPGIGFGS--------- 340 (370)
T ss_dssp HTTCBCCCCC-------------------BTTEECCBCSS--CHHHHHHHHHHHH---C-EECEEGGGGCG---------
T ss_pred HcCCeecCCC-------------------cceEEEEecCC--CHHHHHHHHHHhC---C-EEEeCchhhCC---------
Confidence 8765443221 34577778874 2456666664 32 3 45555522100
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..++.+|||++ . +++.++.+.+.|.+
T Consensus 341 ------------~~~~~~Ri~~~-~--~~~~i~~~~~~l~~ 366 (370)
T 2z61_A 341 ------------KGKNYIRISYA-N--SYENIKEGLERIKE 366 (370)
T ss_dssp ------------GGSSBEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ------------CCCCEEEEEEe-C--CHHHHHHHHHHHHH
Confidence 02478999999 4 34445555444443
No 47
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=6.5e-29 Score=245.32 Aligned_cols=242 Identities=18% Similarity=0.189 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 101 VLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 101 ~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
..++++.+|++++ .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.+
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~ 139 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPK-----SLGAEVDLWQIEEENG 139 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEEEEGGGT
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeccccCC
Confidence 4689999999863 3679999999999999999999999999999999999887763 257777777653
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----CCCCeEEEe
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----RLGADVVVH 242 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-----~~g~di~~~ 242 (447)
|+++|++++ ++++++|++++|+||+|.+.| +++|.++|++||+++|+|++|+.+...+. ..+.++++.
T Consensus 140 ~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 218 (375)
T 3op7_A 140 WLPDLEKLRQLI-RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVN 218 (375)
T ss_dssp TEECHHHHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEE
T ss_pred CCCCHHHHHHhh-ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEe
Confidence 899999999 788999999999999999999 99999999999999999999966544311 136789999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc-HHHHHHHHHHHHHHHHHHHHhCC
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
|+||.+|++|.|+ |++++++++++.+...+... ...++.+.+.++...+...+. +....+++.++++.+.+.|++.+
T Consensus 219 s~sK~~~~~G~r~-G~v~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 296 (375)
T 3op7_A 219 SLSKTYSLPGIRI-GWVAANHQVTDILRDYRDYT-MICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEP 296 (375)
T ss_dssp ESSSSSSCGGGCC-EEEECCHHHHHHHTTTGGGT-TSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred EChhhcCCcccce-EEEEeCHHHHHHHHHHHhhh-ccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999899998 99999999998887655421 122223333333333333222 33344556888899999998864
Q ss_pred C-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013210 322 L-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 369 (447)
Q Consensus 322 ~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l 369 (447)
. .+..|. .|.++++.++.......+...+
T Consensus 297 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l 326 (375)
T 3op7_A 297 LVSYIRPA-------------------VVSTSFVKIAVDMPMEDFCLQL 326 (375)
T ss_dssp TEEECCCS-------------------SSSCEEEEECCSSCHHHHHHHH
T ss_pred CceEecCC-------------------CeEEEeEEcCCCCCHHHHHHHH
Confidence 4 443332 2346666666332345566665
No 48
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=2.7e-29 Score=250.07 Aligned_cols=278 Identities=15% Similarity=0.191 Sum_probs=195.6
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++++.+++++ | .+.+++|+||++|+.+++++++++| |+|+++.|.|+++...+. ..|.++..++.
T Consensus 79 ~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~ 153 (398)
T 3ele_A 79 VETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVN-----AAGARLVEVPA 153 (398)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEec
Confidence 56777777765 3 3569999999999999999999999 999999999999887763 26888888876
Q ss_pred C------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHh------cCCEEEEeCCCCCCCCCc-----
Q 013210 173 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP----- 232 (447)
Q Consensus 173 ~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~------~gi~livD~~~~~~~~~~----- 232 (447)
+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|++ ||+++|+|++|+.+.+..
T Consensus 154 ~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~ 232 (398)
T 3ele_A 154 DTEHFQIDFDALEERI-NAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPF 232 (398)
T ss_dssp CTTTSSCCHHHHHHTC-CTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCC
T ss_pred CCcCCcCCHHHHHHHh-CcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCC
Confidence 5 899999999 778999999999999999998 6677799998 999999999996554321
Q ss_pred --cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHH------HHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 233 --ARLGADVVVHSISKFISGGADIIAGAVCGPANLV------NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 233 --~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~------~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
...+.++++.|+||.+|++|.|+ ||++++++++ +.+...... ......+.....++...++.. ...+
T Consensus 233 ~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~-~~~~ 307 (398)
T 3ele_A 233 VTKYYDNTLVCYSYSKSLSLPGERI-GYVLVPDEVYDKAELYAAVCGAGRA---LGYVCAPSLFQKMIVKCQGAT-GDIN 307 (398)
T ss_dssp GGGTCSSEEEEEESTTTSSCTTTCC-EEEECCTTSTTHHHHHHHHHHHHHH---TTCCCSCHHHHHHHTTCTTCC-CCHH
T ss_pred hHhhcCCeEEEEehhhcCCCcccee-EEEEEcchhhhHHHHHHHHHHHhhh---ccccCCCHHHHHHHHHHhcCH-HHHH
Confidence 12367899999999999999999 9998887643 333322221 111222222222222223221 1356
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 305 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
++.++++++.+.|++.+..+..|. .|.++++.++.. ....+.+.|... | +.+..|.
T Consensus 308 ~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~-~~~~~~~~l~~~---g-i~v~~g~ 363 (398)
T 3ele_A 308 AYKENRDLLYEGLTRIGYHCFKPD-------------------GAFYMFVKALED-DSNAFCEKAKEE---D-VLIVAAD 363 (398)
T ss_dssp HHHHHHHHHHHHHHHHTCCEECCS-------------------BSSEEEEECSSS-CHHHHHHHHHTT---T-EECEESG
T ss_pred HHHHHHHHHHHHHHHcCCeecCCC-------------------eeEEEEEEcCCC-CHHHHHHHHHHC---C-EEEeCcc
Confidence 778889999999988766655432 344689998743 255677777653 3 4555552
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHH
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSR 438 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~ 438 (447)
.+ + .++.+|||++ . +++++.++.|.+++++
T Consensus 364 ~~----------------------~-~~~~iRis~~-~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 364 GF----------------------G-CPGWVRISYC-VDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp GG----------------------T-CTTEEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred cc----------------------C-CCCeEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 21 1 1478999999 5 2233344444444443
No 49
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=9.2e-30 Score=250.70 Aligned_cols=295 Identities=15% Similarity=0.131 Sum_probs=211.0
Q ss_pred ccccCCCCchHHHHHHH-HHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 91 FIYSRHFNPTVLNLSRQ-MAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~-ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
+.+++...+...++++. +++++|.+.+++|+||++|+.+++++++++||+|+++.++|+++...+. ..|.++.+
T Consensus 45 ~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~ 119 (371)
T 2e7j_A 45 GRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-----RAGLNIAL 119 (371)
T ss_dssp --------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HTTCEEEE
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHH-----HcCCeEEE
Confidence 44555667788999999 9999998889999999999999999999999999999999999987762 26888888
Q ss_pred eC--CC-----CHHHHHHhhcc----CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC--CCccCCC
Q 013210 170 VD--IS-----DHEMVNSAIVQ----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLG 236 (447)
Q Consensus 170 v~--~~-----d~~~l~~~i~~----~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~--~~~~~~g 236 (447)
++ .+ |+++|++++++ +++++|++++++||+|.+.|+++|.++|++||+++|+|++|+... .+...++
T Consensus 120 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 199 (371)
T 2e7j_A 120 VPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIG 199 (371)
T ss_dssp ECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHT
T ss_pred eecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcC
Confidence 88 65 89999999832 689999999999999999999999999999999999999994432 3444457
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHH-HHHHhhhhhhh----cCC-CccHHHHHHHHccCCcHH-HHHHHH--H
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNS-MMDLHQGALML----LGP-TMNPKVAFELSERIPHLG-LRMKEH--C 307 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~-l~~~~~~~~~~----~g~-~~~~~~a~~~~~~~~~l~-~~~~~~--~ 307 (447)
+|+++.|+||++++++ ++ |+++.++++++. +.....+.... .++ ......+.. ..++.+. ...+++ .
T Consensus 200 ~di~~~s~sK~~~~~~-~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~l~~~~~~~~~~~~~~ 275 (371)
T 2e7j_A 200 ADFIVGSGHKSMAASG-PI-GVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLM--ASFPHVRERIKRWDEEV 275 (371)
T ss_dssp CSEEEEEHHHHSSCCS-SC-EEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHH--HHHHHHHHHGGGHHHHH
T ss_pred CCEEEecCCcCCCCCC-Cc-EEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 8999999999988665 66 999998887766 54333211110 222 222222221 1112222 344566 7
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccc
Q 013210 308 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++++++.+.|++.+.++..|.. +.|+++++.++ ....+.+.|.. .| +.+...
T Consensus 276 ~~~~~l~~~L~~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~l~~---~g-i~~~~~---- 327 (371)
T 2e7j_A 276 EKARRFAAEMEKLGIKQLGDNP-----------------HNHDLMFFHAE---VLYEISKKAKG---GR-FFLYRE---- 327 (371)
T ss_dssp HHHHHHHHHHHHTTCEEESSSS-----------------CCSSEEEEECH---HHHHHHHHSSS---GG-GHHHHH----
T ss_pred HHHHHHHHHHHHcCcEEecCCC-----------------ccCceEEEECC---CHHHHHHHHHH---CC-EEEEec----
Confidence 8889999999888666654320 13568999986 45678777775 23 222210
Q ss_pred cccccccccCCCCCHHHHHhc---CCCCCeEE-EEeCCCC-CHHHHHHHHHHHHHHhh
Q 013210 388 LMSCSGSSTSSELNAEEKALA---GISAGLVR-MSVGYLG-TLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~---g~~~~~iR-iS~g~~~-~~~~~i~~l~~al~~~~ 440 (447)
.... |..++.+| ||++ .. .+++.++.+.++|+++.
T Consensus 328 -----------------~~~~~~~g~~~~~iRii~~~-~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 328 -----------------LKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp -----------------HHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHH
T ss_pred -----------------cccccccCCCCCceEEEEee-ccCCCHHHHHHHHHHHHHHH
Confidence 0011 33468899 9999 77 77888888888877654
No 50
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.97 E-value=2.2e-28 Score=241.89 Aligned_cols=294 Identities=15% Similarity=0.070 Sum_probs=209.4
Q ss_pred ccccCCCCchHHHHHHHHHHHhC----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
+.|+....+..+.+++.+++.+| .+.+++|+||++|+++++++++++||+|+++.|+|+++...+. ..|.+
T Consensus 55 ~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~ 129 (383)
T 3kax_A 55 FGYTLPPENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVT-----TNNRQ 129 (383)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHHHH-----HTTCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHH-----HcCCE
Confidence 44655566777888888888877 3569999999999999999999999999999999999987763 26778
Q ss_pred EEEeCC--------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013210 167 TTFVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---- 231 (447)
Q Consensus 167 ~~~v~~--------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---- 231 (447)
+..++. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~ 208 (383)
T 3kax_A 130 LCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTH 208 (383)
T ss_dssp EEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred EEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCc
Confidence 887775 3899999999 889999999999999999987 556677799999999999999655432
Q ss_pred --ccCC-----CCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHH
Q 013210 232 --PARL-----GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLR 302 (447)
Q Consensus 232 --~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~ 302 (447)
...+ +.++++.|+||.+|++|.|+ |+++. ++++++.+...........++.+.+.++..++... +.+...
T Consensus 209 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 287 (383)
T 3kax_A 209 TPFASLSEELAARTITCMAPSKTFNIAGLQA-SIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEI 287 (383)
T ss_dssp CCGGGSCHHHHTTEEEEECSHHHHTCGGGCC-EEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred eeHhhcCccccCcEEEEEEChhhccCcchhh-eEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhHHHHHHH
Confidence 1122 56799999999999999998 88887 68888888766542211122223333333333332 225566
Q ss_pred HHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-cccccccc
Q 013210 303 MKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQFGFM 378 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~-~~~~~g~~ 378 (447)
.+++.++++++.+.|++ + +..+..|. .+.++++.++.. .+...+.+.|. . .| +
T Consensus 288 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---~g-i 344 (383)
T 3kax_A 288 RFYIEDNAKFACEYIKDHIPTLSVMKPE-------------------GSFLLWIDCSALNLSQDERTKLLEEK---GK-I 344 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEECCCS-------------------BSSEEEEECGGGCCCHHHHHHHHHHT---SC-E
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEecCC-------------------ceEEEEEEccccCCCHHHHHHHHHhh---CC-E
Confidence 67788999999999987 4 44554332 344667887631 23567777775 4 33 5
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.++.|..+ . ...++.+|||++ . +++.++.+.++|++
T Consensus 345 ~v~~g~~~--------~-------------~~~~~~iRi~~~-~--~~~~i~~~l~~l~~ 380 (383)
T 3kax_A 345 IVEPGEKY--------G-------------LGGEEHIGINIG-C--PRSVLEEILNRLRH 380 (383)
T ss_dssp ECEESGGG--------C-------------TTCTTEEEEECS-S--CHHHHHHHHHHHHH
T ss_pred EeECchhh--------c-------------CCCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 66655321 1 012588999999 5 34445555555443
No 51
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.97 E-value=3.7e-28 Score=236.13 Aligned_cols=275 Identities=17% Similarity=0.178 Sum_probs=204.2
Q ss_pred CCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 97 FNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.++...++++.+|+++|++ .+++|+|+++++++++..+ +||+|+++.|.|+++...+ +..|.++..++.+
T Consensus 49 ~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~-----~~~g~~~~~v~~~~ 121 (337)
T 3p1t_A 49 PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARI-----AVSGLRHFEIGLTD 121 (337)
T ss_dssp CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHH-----TTSCCEEEEECBCT
T ss_pred CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHH-----HHcCCEEEEecCCC
Confidence 4577889999999999974 5999999999999999887 8999999999999988766 2368888888754
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC----ccCCCCeEEEeCCC
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS----PARLGADVVVHSIS 245 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~----~~~~g~di~~~S~s 245 (447)
|+++|+++ .++++|++++|+||||.++|++++.++|+++++ +|+|++|..+... ....+.++++.|+|
T Consensus 122 ~~~~d~~~l~~~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~s 197 (337)
T 3p1t_A 122 DLLLDPNDLAQV---SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFS 197 (337)
T ss_dssp TSSBCHHHHTTC---CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESS
T ss_pred CCCCCHHHHHhh---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCc
Confidence 78888765 368999999999999999999999999999997 5669999644322 12236789999999
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL 325 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~ 325 (447)
|.+|++|.|+ ||++.++++++.+..... ....+.+.+.++..++.....+....+++.++++++.+.|++++..+.
T Consensus 198 K~~g~~G~r~-G~~~~~~~~~~~l~~~~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 273 (337)
T 3p1t_A 198 KSYGLAGLRL-GALFGPSELIAAMKRKQW---FCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVA 273 (337)
T ss_dssp STTCCTTTCC-EEEECCHHHHHHHHTTSC---TTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred hhccCcchhe-EEEEeCHHHHHHHHhhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCcCEEC
Confidence 9999999998 999999999888865433 122233333333344443334556777788888999999998865543
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 405 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~ 405 (447)
.| .|+++++.+++.+ .+.+.|... | +.++.|..+
T Consensus 274 ~~--------------------~~~~~~~~~~~~~---~~~~~l~~~---g-i~v~~g~~~------------------- 307 (337)
T 3p1t_A 274 SS--------------------EANFVLVENAAGE---RTLRFLRER---G-IQVKDAGQF------------------- 307 (337)
T ss_dssp CC--------------------SSSEEEEECTTTH---HHHHHHHHT---T-EECEEGGGG-------------------
T ss_pred CC--------------------CCeEEEEEcCCHH---HHHHHHHHC---C-eEEEECccC-------------------
Confidence 22 3558888876533 344445442 3 566656321
Q ss_pred HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 406 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 406 ~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+. ++.+|||++ . ++.++.|.++|+++.
T Consensus 308 ---~~-~~~iRis~~-~---~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 308 ---GL-HHHIRISIG-R---EEDNDRLLAALAEYS 334 (337)
T ss_dssp ---TC-CSEEEEECC-C---HHHHHHHHHHHHHHT
T ss_pred ---CC-CCeEEEecC-C---HHHHHHHHHHHHHHh
Confidence 11 478999999 3 566777777777664
No 52
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.97 E-value=7.3e-29 Score=249.62 Aligned_cols=243 Identities=17% Similarity=0.158 Sum_probs=182.5
Q ss_pred hHHHHHHHHHHHhC-------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 100 TVLNLSRQMAALEG-------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 100 ~~~~l~~~ia~l~g-------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
...++++.+|++++ .+.+++|+||++|+.++++.++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 97 g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~ 171 (427)
T 3dyd_A 97 GFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAE-----SMGIEVKLYNL 171 (427)
T ss_dssp CCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEE
T ss_pred CcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEec
Confidence 34789999999998 3569999999999999999999999999999999999887763 25777776654
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccCCC
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLG 236 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~~g 236 (447)
+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+. ...++
T Consensus 172 ~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~ 250 (427)
T 3dyd_A 172 LPEKSWEIDLKQLEYLI-DEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS 250 (427)
T ss_dssp EGGGTTEECHHHHHSSC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC
T ss_pred ccccCCCCCHHHHHHHh-ccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC
Confidence 2 899999999 778999999999999999999 999999999999999999999665432 11222
Q ss_pred ---CeEEEeCCCccccCCCCeeEEEEEcC-------hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHHHH
Q 013210 237 ---ADVVVHSISKFISGGADIIAGAVCGP-------ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMK 304 (447)
Q Consensus 237 ---~di~~~S~sK~~g~~g~~igG~l~~~-------~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~ 304 (447)
..+++.|+||.++++|.|+ ||++++ +++++.+...... ...++.+.+.++..++.. .+.+..+.+
T Consensus 251 ~~~~vi~~~S~sK~~~~~G~ri-G~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~ 327 (427)
T 3dyd_A 251 TDVPILSCGGLAKRWLVPGWRL-GWILIHDRRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLS 327 (427)
T ss_dssp SSCCEEEEEESTTTSSCGGGCC-EEEEEECSTTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCcEEEEeeccccCCCcCcce-EEEEecCcchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3478899999999999999 887765 4677666655431 133344444444444442 234566777
Q ss_pred HHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHhh
Q 013210 305 EHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQ 370 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~l~~~l~ 370 (447)
++.++++++.+.|++++ ..+..|. .|.++++.++.. .....+...|.
T Consensus 328 ~~~~~~~~l~~~L~~~~g~~~~~p~-------------------~g~~~~~~l~~~~~~~~~~~~~~~~~l~ 380 (427)
T 3dyd_A 328 FLKSNADLCYGALAAIPGLRPVRPS-------------------GAMYLMVGIEMEHFPEFENDVEFTERLV 380 (427)
T ss_dssp HHHHHHHHHHHHHHHSTTEEEECCS-------------------BTTEEEEEECGGGCTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceecCCC-------------------eeEEEEEecCHhhcCCCCCHHHHHHHHH
Confidence 88999999999999873 3554443 455778787611 12345666653
No 53
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.97 E-value=4.8e-29 Score=250.16 Aligned_cols=289 Identities=17% Similarity=0.221 Sum_probs=206.4
Q ss_pred HHHHHHHHHHhC------C---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALEG------T---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~g------~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++++.++++++ . +.+++|+||++|+++++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 70 ~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~ 144 (422)
T 3fvs_A 70 PPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTM-----MAGGRPVFVSL 144 (422)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHH-----HcCCEEEEEec
Confidence 567777777765 2 469999999999999999999999999999999999887763 25767666653
Q ss_pred -----------------CCHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 173 -----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 173 -----------------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
.|+++|++++ ++++++|++++|+||||.+. ++++|+++|++||+++|+|++|+.+.+..
T Consensus 145 ~~~~~~~G~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~ 223 (422)
T 3fvs_A 145 KPGPIQNGELGSSSNWQLDPMELAGKF-TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG 223 (422)
T ss_dssp BCCCCCSSSCCBGGGSBCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred ccccccccccccccCCCCCHHHHHhhc-CCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC
Confidence 2899999999 77899999999999999999 58899999999999999999996554321
Q ss_pred ------cC----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-------
Q 013210 233 ------AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------- 295 (447)
Q Consensus 233 ------~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~------- 295 (447)
.. .+.++++.|+||.+|++|.|+ ||+++++++++.+....... ...++.+.+.++..++..
T Consensus 224 ~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~ 301 (422)
T 3fvs_A 224 HQHISIASLPGMWERTLTIGSAGKTFSATGWKV-GWVLGPDHIMKHLRTVHQNS-VFHCPTQSQAAVAESFEREQLLFRQ 301 (422)
T ss_dssp CCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCChhhcccccCcEEEEecchhccCCccceE-EEEEeCHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHhhccccccc
Confidence 11 256799999999999999998 99999999988887655421 122333333344444432
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH-------------
Q 013210 296 -IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK------------- 361 (447)
Q Consensus 296 -~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~------------- 361 (447)
..++....+++.++++++.+.|++++..+..|. .|.++++.+.....
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (422)
T 3fvs_A 302 PSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQ-------------------GSYFLITDISDFKRKMPDLPGAVDEPY 362 (422)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS-------------------BSSEEEEECHHHHHHCCCCCCCTTCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-------------------eeeEEEEechhhccccccccccccccc
Confidence 344666778889999999999998877766553 45688888753210
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...+...+.. ..| +.++.|+.+..- .. -....+.+|||++ . +++.++.+.+.|+++
T Consensus 363 ~~~~~~~ll~--~~g-v~v~~g~~f~~~------------~~----~~~~~~~iRis~~-~--~~e~i~~~l~~l~~~ 418 (422)
T 3fvs_A 363 DRRFVKWMIK--NKG-LVAIPVSIFYSV------------PH----QKHFDHYIRFCFV-K--DEATLQAMDEKLRKW 418 (422)
T ss_dssp HHHHHHHHHH--HHC-EECEEGGGGSCH------------HH----HTTSCSEEEEECC-C--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcC-EEEeCcHHhcCC------------cC----CCCCCCeEEEEec-C--CHHHHHHHHHHHHHH
Confidence 2345554332 123 566666332110 00 0123589999999 6 455555555555443
No 54
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=1.8e-28 Score=242.70 Aligned_cols=282 Identities=17% Similarity=0.179 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----- 173 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----- 173 (447)
..++++.++++++.+ .+++|+||++|+.+++++++++||+|+++.++|+++...+. ..|.++..++.+
T Consensus 63 ~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~ 137 (381)
T 1v2d_A 63 LPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF-----LAGAKARLVRLDLTPEG 137 (381)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEEETTE
T ss_pred CHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEeCCCCCcc
Confidence 478999999999874 69999999999999999999999999999999999887663 257777777653
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc--CCCCeEE
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA--RLGADVV 240 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~--~~g~di~ 240 (447)
|+++|++++ ++++++|++++|+||||.+.| +++|.++|++||+++|+|++|+.+.+ +.. ..++|++
T Consensus 138 ~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~ 216 (381)
T 1v2d_A 138 FRLDLSALEKAL-TPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFT 216 (381)
T ss_dssp EECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEE
T ss_pred CCcCHHHHHHhc-CcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEE
Confidence 899999999 778999999999999999986 88999999999999999999965432 122 2478999
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc---CCcHHHHHHHHHHHHHHHHHHH
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER---IPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~---~~~l~~~~~~~~~~~~~l~~~L 317 (447)
+.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++.. .+++....+++.++++++.+.|
T Consensus 217 ~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L 294 (381)
T 1v2d_A 217 VGSAGKRLEATGYRV-GWIVGPKEFMPRLAGMRQWT-SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL 294 (381)
T ss_dssp EEEHHHHTTCGGGCC-EEEECCTTTHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EeechhhcCCcccce-EEEEeCHHHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999899998 99999999888887654411 123333333333334432 3446667778899999999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccC
Q 013210 318 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 318 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
++.+.++..|. .|.++++.++..+ +...+.. .| +.+..|..+ ...
T Consensus 295 ~~~g~~~~~~~-------------------~~~~~~~~~~~~~----~~~~l~~---~g-i~v~~g~~~--------~~~ 339 (381)
T 1v2d_A 295 RAMGLRVYVPE-------------------GTYFLMAELPGWD----AFRLVEE---AR-VALIPASAF--------YLE 339 (381)
T ss_dssp HHTTCCEECCS-------------------BSSEEEEECTTCC----HHHHHHH---TC-EECEEGGGG--------CSS
T ss_pred HHCCCEecCCC-------------------cceEEEEecChHh----HHHHHHh---CC-EEEecchHh--------CCC
Confidence 98766655332 3458888887432 3333443 23 454444221 100
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...++.+|||++ . +++.++.+.+.|.++
T Consensus 340 -----------~~~~~~iRi~~~-~--~~~~i~~~~~~l~~~ 367 (381)
T 1v2d_A 340 -----------DPPKDLFRFAFC-K--TEEELHLALERLGRV 367 (381)
T ss_dssp -----------SCCTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred -----------CCCCCEEEEEeC-C--CHHHHHHHHHHHHHH
Confidence 013578999999 6 444555555555443
No 55
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=2e-28 Score=243.34 Aligned_cols=277 Identities=18% Similarity=0.198 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHh----CC----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----GT----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g~----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|+++ |. +.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 80 ~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~ 154 (389)
T 1o4s_A 80 IYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII-----LAGGTVNVVET 154 (389)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEec
Confidence 467888888887 53 469999999999999999999999999999999999887763 25777777765
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC---
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR--- 234 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~--- 234 (447)
+ |+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+. ...
T Consensus 155 ~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~ 233 (389)
T 1o4s_A 155 FMSKNFQPSLEEVEGLL-VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE 233 (389)
T ss_dssp CGGGTTCCCHHHHHHTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS
T ss_pred CCccCCCCCHHHHHHhc-ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC
Confidence 3 789999999 678999999999999999987 899999999999999999999655432 111
Q ss_pred -CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013210 235 -LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 313 (447)
Q Consensus 235 -~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l 313 (447)
.++|+++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++... +....+++.++++++
T Consensus 234 ~~~~~i~~~s~sK~~~~~G~r~-G~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~l 309 (389)
T 1o4s_A 234 GFDRIVYINGFSKSHSMTGWRV-GYLISSEKVATAVSKIQSHT-TSCINTVAQYAALKALEVD--NSYMVQTFKERKNFV 309 (389)
T ss_dssp SSTTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TCSCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeechhhcCCcccce-EEEEeCHHHHHHHHHHhhhc-ccCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHH
Confidence 368999999999999899998 99999999988887665421 1222223333333333322 555677788999999
Q ss_pred HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccCcccccccc
Q 013210 314 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCS 392 (447)
Q Consensus 314 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~-~~~~~g~~~vs~G~~~s~~~~~ 392 (447)
.+.|++.+.++..|. .|.++++.++ .+...+.+.|. .. | +.+..|..+
T Consensus 310 ~~~L~~~g~~~~~~~-------------------~~~~~~~~~~--~~~~~l~~~l~~~~---g-i~v~~g~~f------ 358 (389)
T 1o4s_A 310 VERLKKMGVKFVEPE-------------------GAFYLFFKVR--GDDVKFCERLLEEK---K-VALVPGSAF------ 358 (389)
T ss_dssp HHHHHHTTCCCCCCS-------------------BSSEEEEECS--SCHHHHHHHHHHHH---C-EECEEGGGG------
T ss_pred HHHHHhcCCeeecCC-------------------cceEEEEeCC--CCHHHHHHHHHHHC---C-EEEeCchhc------
Confidence 999988755443221 3457788885 22455666664 32 3 444444211
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 393 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 393 a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+. ++.+|||++ . +++.++.+.+.|.+
T Consensus 359 ----------------~~-~~~~Ris~~-~--~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 359 ----------------LK-PGFVRLSFA-T--SIERLTEALDRIED 384 (389)
T ss_dssp ----------------TC-TTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ----------------CC-CCeEEEEEe-C--CHHHHHHHHHHHHH
Confidence 11 368999999 5 34445444444443
No 56
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.97 E-value=1e-28 Score=245.01 Aligned_cols=216 Identities=18% Similarity=0.250 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+++++ | .+.+++|+||++|+.+++++++++||+|+++.++|+++...+. ..|.++..++.
T Consensus 69 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~ 143 (388)
T 1j32_A 69 EPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-----LAEGTPVILPT 143 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCEEEEecC
Confidence 356777777776 3 3569999999999999999999999999999999999887763 25778888775
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC--
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-- 234 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~-- 234 (447)
+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+. ...
T Consensus 144 ~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 222 (388)
T 1j32_A 144 TVETQFKVSPEQIRQAI-TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAAS 222 (388)
T ss_dssp CGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred CcccCCCCCHHHHHHhc-CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcc
Confidence 3 789999999 678999999999999999975 889999999999999999999665432 111
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
.++|+++.|+||++|++|.|+ |++++++++++.+....... ....+.+.+.++...+... +++....+++.+++
T Consensus 223 ~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 300 (388)
T 1j32_A 223 PEAYERSVVCSGFAKTYAMTGWRV-GFLAGPVPLVKAATKIQGHS-TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERR 300 (388)
T ss_dssp HHHHHTEEEEEESTTTTTCTTTCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEeechhccCCcccce-EEEEeCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 357999999999999899998 99999999988887655421 1222223333333344432 33566777888999
Q ss_pred HHHHHHHHhC-CCee
Q 013210 311 LIFARRMKKL-GLKV 324 (447)
Q Consensus 311 ~~l~~~L~~~-~~~v 324 (447)
+++.+.|++. +.++
T Consensus 301 ~~l~~~L~~~~g~~~ 315 (388)
T 1j32_A 301 RYMLDALNAMPGLEC 315 (388)
T ss_dssp HHHHHHHHTCTTCBC
T ss_pred HHHHHHHhhCCCCcc
Confidence 9999999887 4444
No 57
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.97 E-value=2.5e-28 Score=244.15 Aligned_cols=311 Identities=15% Similarity=0.143 Sum_probs=221.5
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHA 153 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~ 153 (447)
+.+.+.+.. ++.....+.+.....+..+++++.+++++|.+..+++++|++|+..++++++++||.|+++.+.|+++..
T Consensus 80 ~a~~~~l~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~ 158 (409)
T 3kki_A 80 ARLAKSLLE-EQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWE 158 (409)
T ss_dssp HHHHHHHHS-CCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHH
T ss_pred HHHHHHHHH-cCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHH
Confidence 555555543 3322222222222234456899999999999999999999999999999999999999999999999887
Q ss_pred HHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013210 154 LLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP- 232 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~- 232 (447)
.+. ..|.++..++..|+++|++++.+.++++|++++|+||||.+.|+++|.++|++||+++|+|++|+...+.+
T Consensus 159 ~~~-----~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~ 233 (409)
T 3kki_A 159 GAR-----YANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPN 233 (409)
T ss_dssp HHH-----HTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGG
T ss_pred HHH-----HcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCC
Confidence 763 25788888888899999999944468999999999999999999999999999999999999995532211
Q ss_pred -------cC--CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHH---HHHccCCcHH
Q 013210 233 -------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF---ELSERIPHLG 300 (447)
Q Consensus 233 -------~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~---~~~~~~~~l~ 300 (447)
.. .++|+++.|+||.++++ ||++++++++++.+........ .+....+..+. .++..++...
T Consensus 234 g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~~aal~~~~~~~ 307 (409)
T 3kki_A 234 GAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNNEVNRCVPFISYPAI--FSSTLLPYEAAGLETTLEIIESAD 307 (409)
T ss_dssp GCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESSSGGGTHHHHCHHHH--HSBCCCHHHHHHHHHHHHHHHHCH
T ss_pred CCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECHHHHHHHHHhCcCcc--ccCCCcHHHHHHHHHHHHHHhcCH
Confidence 11 25789999999999966 3999999888877765433221 22223332222 2222222224
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013210 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~v 380 (447)
...+++.++++++.+.|++.+..+. +.|.++++.++.......+.+.|... | +.+
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~g~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~L~~~---G-v~v 362 (409)
T 3kki_A 308 NRRQHLDRMARKLRIGLSQLGLTIR---------------------SESQIIGLETGDERNTEKVRDYLESN---G-VFG 362 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCC---------------------CSSSEEEEEEESHHHHHHHHHHHHHT---T-EEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccC---------------------CCCCEEEEEeCCHHHHHHHHHHHHHC---C-ceE
Confidence 5666788999999999998765433 13558999998766667788887752 3 333
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
+.+. .+.. ....+.|||+++ ...+++.++.+.++|+++-+.
T Consensus 363 ~~~~------~~~~--------------~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 363 SVFC------RPAT--------------SKNKNIIRLSLN-SDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp EEEC------TTSS--------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred eeeC------CCCc--------------CCCCcEEEEEcc-CCCCHHHHHHHHHHHHHHHhc
Confidence 2221 1110 113578999999 877888888888887766443
No 58
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.97 E-value=1.9e-28 Score=248.14 Aligned_cols=287 Identities=16% Similarity=0.176 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHh----CC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 101 VLNLSRQMAALE----GT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 101 ~~~l~~~ia~l~----g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
..++++.||+++ |. +.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.+
T Consensus 120 ~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~ 194 (448)
T 3aow_A 120 FTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFN-----FYEPQYIQIPLD 194 (448)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEeccC
Confidence 467888888888 75 679999999999999999999999999999999999988773 257777777653
Q ss_pred ----CHHHHHHhhc----c-CCceEEE-EEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC
Q 013210 174 ----DHEMVNSAIV----Q-GRTKVLY-FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR 234 (447)
Q Consensus 174 ----d~~~l~~~i~----~-~~t~lV~-i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~ 234 (447)
|+++|+++++ . .++++|+ +++++||||.+.+ +++|.++|++||+++|+|++|+.+.+. ...
T Consensus 195 ~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~ 274 (448)
T 3aow_A 195 DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKA 274 (448)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGG
T ss_pred CCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHh
Confidence 8999999983 2 2789985 5899999999987 568999999999999999999655432 112
Q ss_pred C---CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC---CcHHHHHHHHHH
Q 013210 235 L---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCH 308 (447)
Q Consensus 235 ~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~~~~~~ 308 (447)
+ +.++++.|+||+++ +|.|+ ||+++++++++.+....... ....+.+.+.++..++... +++....+++.+
T Consensus 275 ~~~~~~vi~~~S~SK~~~-~Glri-G~v~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 351 (448)
T 3aow_A 275 LDNEGRVIYLGTFSKILA-PGFRI-GWMVGDPGIIRKMEIAKQST-DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKP 351 (448)
T ss_dssp GCTTSCEEEEEESTTTTC-GGGCC-EEEEECHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEccchhhcc-ccccE-EEEEeCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 57899999999999 89998 99999999998887655422 1233344444444444432 234455666788
Q ss_pred HHHHHHHHHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCc
Q 013210 309 RALIFARRMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 309 ~~~~l~~~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
+++.+.+.|++. +..+..|. .|.++++.++...+...+.+.|... | +.+..|..
T Consensus 352 ~~~~l~~~L~~~~~~g~~~~~p~-------------------~g~~~~v~~~~~~~~~~l~~~l~~~---g-V~v~pg~~ 408 (448)
T 3aow_A 352 RRDAMLEALEEFMPEGVKWTKPE-------------------GGMFIWVTLPDGIDSKKMLERAIKK---G-VAYVPGEA 408 (448)
T ss_dssp HHHHHHHHHHHHCCTTCEECCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHT---T-EECEEGGG
T ss_pred HHHHHHHHHHHhCCCCeEEeCCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-cEEEcchh
Confidence 999999999874 34544332 4668999997422345677777652 3 45555522
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHH
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSR 438 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~ 438 (447)
+ .. .+..++.+|||++ .. ++++.++.|.+++++
T Consensus 409 f--------~~-----------~~~~~~~iRls~~-~~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 409 F--------YA-----------HRDVKNTMRLNFT-YVDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp G--------ST-----------TCCCCSEEEEECS-SSCTHHHHHHHHHHHHHHHH
T ss_pred h--------cC-----------CCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHHH
Confidence 1 00 0112578999999 53 344445555555544
No 59
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.97 E-value=8.4e-29 Score=244.72 Aligned_cols=290 Identities=12% Similarity=0.117 Sum_probs=207.0
Q ss_pred CchHHHHHHHHHHHhCCCe----EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 98 NPTVLNLSRQMAALEGTEA----AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~----~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.+..+++++.+++++|.+. +++|+||++|+. ++.+++++||+|+++.+.|++.. +...... .|.++.+++.+
T Consensus 34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~-~g~~~~~v~~~ 109 (384)
T 3zrp_A 34 VEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDR--WEQIFKR-YPVNVKVLRPS 109 (384)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHH--HHHHHTT-SSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHH--HHHHHHH-cCCcEEEecCC
Confidence 4567899999999999765 999999999999 99999999999999999997632 2122233 68899988875
Q ss_pred -----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCc
Q 013210 174 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISK 246 (447)
Q Consensus 174 -----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK 246 (447)
|+++|++++.+.++++|++++++||+|.+.|+++|.++|++||+++|+|++|+ ....+....++|+++.|+||
T Consensus 110 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K 189 (384)
T 3zrp_A 110 PGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQK 189 (384)
T ss_dssp TTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTS
T ss_pred CCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcc
Confidence 89999999944479999999999999999999999999999999999999984 23344555689999999999
Q ss_pred ccc-CCCCeeEEEEEcChHHHHHH-------------HHHhhhhh-------hhcCC-CccHHHHH-HHHccC--CcHHH
Q 013210 247 FIS-GGADIIAGAVCGPANLVNSM-------------MDLHQGAL-------MLLGP-TMNPKVAF-ELSERI--PHLGL 301 (447)
Q Consensus 247 ~~g-~~g~~igG~l~~~~~~~~~l-------------~~~~~~~~-------~~~g~-~~~~~~a~-~~~~~~--~~l~~ 301 (447)
+++ ++| + |+++.++++++.+ ........ ...|+ ......+. .++..+ ..+..
T Consensus 190 ~~~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~ 266 (384)
T 3zrp_A 190 ALGSAAG--L-GLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIEN 266 (384)
T ss_dssp TTCCCSS--E-EEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred cccCCCc--e-EEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 886 444 5 9999999887776 32222110 01122 22122222 222221 12556
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
..+++.++++++.+.|++++.++..+. + ....+.+++|.+++ .....+.+.|... | +.++
T Consensus 267 ~~~~~~~~~~~l~~~L~~~g~~~~~~~----~-----------~~~~~~~~~~~~~~-~~~~~~~~~l~~~---g-i~v~ 326 (384)
T 3zrp_A 267 RIKRHTMVASAIRAGLEALGLEIVARR----P-----------ESYSNTVTGVILKV-ADPQKVLAGTVNE---G-VEFA 326 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSCSS----G-----------GGBCSSEEEEECSS-SCHHHHHHHHHTT---T-CCCE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEccCc----c-----------cccCccEEEEECCC-CCHHHHHHHHHHC---C-EEEe
Confidence 777888999999999998865544332 0 01245688999986 3356777777753 3 4555
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|.. +. .+.+|||++ ..++++.++.+.++|+++
T Consensus 327 ~g~~--------~~----------------~~~iRi~~~-~~~~~e~i~~~~~~l~~~ 359 (384)
T 3zrp_A 327 PGVH--------PA----------------FKYFRIGHM-GWVTPNDAIIAISVIERT 359 (384)
T ss_dssp ECCC--------TT----------------CCEEEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred cCCC--------CC----------------cCEEEEecc-ccCCHHHHHHHHHHHHHH
Confidence 5521 00 178999999 766666666666666554
No 60
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.97 E-value=3e-28 Score=243.79 Aligned_cols=270 Identities=15% Similarity=0.104 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHh----CC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----GT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ |. +.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++
T Consensus 77 ~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~~~ 151 (412)
T 2x5d_A 77 IPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAV-----IAGAQVRSVP 151 (412)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HHTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEee
Confidence 467889999888 73 479999999999999999999999999999999999887763 2577777776
Q ss_pred CC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------CccC-
Q 013210 172 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SPAR- 234 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------~~~~- 234 (447)
.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+ +...
T Consensus 152 ~~~~~~~~~d~~~l~~~i-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 230 (412)
T 2x5d_A 152 LVPGIDFFNELERAIRES-IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQV 230 (412)
T ss_dssp CSTTSCHHHHHHHHHHTE-ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cCCccCCCCCHHHHHHhc-ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhc
Confidence 53 468888888 678999999999999999986 67899999999999999999965543 1222
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
.++++++.|+||++|++|.|+ ||+++++++++.+....... ...++.+.+.++..++... +++....+++.+++
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 308 (412)
T 2x5d_A 231 PGAKDIAVEFFTLSKSYNMAGWRI-GFMVGNPELVSALARIKSYH-DYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRR 308 (412)
T ss_dssp TTGGGTEEEEEECC-CCSCTTSCC-EEEEECHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred cCccCcEEEEecCccccCCcccce-EEEEcCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 267999999999999899998 99999999998887655421 1233334444444444433 33566677788999
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHHhhcccccccccccccCccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
+++.+.|++++..+..| ..|.++++.++... ....+.+.|... .| +.+..|..+
T Consensus 309 ~~l~~~L~~~g~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v~~g~~f- 365 (412)
T 2x5d_A 309 DVLVKGLREAGWMVENP-------------------KASMYVWAKIPEPYAHLGSLEFAKKLLQD--AK-VSVSPGIGF- 365 (412)
T ss_dssp HHHHHHHHHHTCCCCCC-------------------SBSSEEEEECCTTTGGGCHHHHHHHHHHH--HC-EECEEGGGG-
T ss_pred HHHHHHHHHCCCEecCC-------------------CeeeEEEEEcCCccCCCCHHHHHHHHHHH--CC-EEEeCchhh-
Confidence 99999998875544322 13457889986321 245677766421 23 455555221
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 422 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~ 422 (447)
.. ..++.+|||++ .
T Consensus 366 -------~~-------------~~~~~iRis~~-~ 379 (412)
T 2x5d_A 366 -------GD-------------YGDDHVRFALI-E 379 (412)
T ss_dssp -------CG-------------GGTTEEEEECC-S
T ss_pred -------CC-------------CCCCeEEEEec-C
Confidence 00 02478999999 6
No 61
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=3.3e-29 Score=252.51 Aligned_cols=292 Identities=14% Similarity=0.121 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhc--CCCC--eEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLC--SSGG--HVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~--~~gd--~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
..++++.+|++++ .+.+++|+||++|+.+++++++ ++|| +|+++.|+|+++...+. ..|.++.
T Consensus 84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-----~~g~~~~ 158 (437)
T 3g0t_A 84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-----ILGQKFE 158 (437)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-----HHTCCCE
T ss_pred hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-----HcCCEEE
Confidence 3678899998876 4579999999999999999998 9999 99999999999887773 2577777
Q ss_pred EeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC--------
Q 013210 169 FVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------- 231 (447)
Q Consensus 169 ~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-------- 231 (447)
+++.+ |+++|+++++++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+.
T Consensus 159 ~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 238 (437)
T 3g0t_A 159 SFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGE 238 (437)
T ss_dssp EEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTS
T ss_pred EEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccc
Confidence 77653 7899999985678999999999999999987 677899999999999999999654321
Q ss_pred ------cc-CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-H-----------------HHHHhhhhhhhcCCCccH
Q 013210 232 ------PA-RLGADVVVHSISKFISGGADIIAGAVCGPANLVN-S-----------------MMDLHQGALMLLGPTMNP 286 (447)
Q Consensus 232 ------~~-~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~-----------------l~~~~~~~~~~~g~~~~~ 286 (447)
.. ..+.++++.|+||.+|++|.|+ ||++.++++++ . +...... .....+.+.+
T Consensus 239 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 316 (437)
T 3g0t_A 239 PLYQPSVANYTDNYILALSSSKAFSYAGQRI-GVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYA-LSSGATHSAQ 316 (437)
T ss_dssp SCCCCCGGGTCSCEEEEEESTTTTSCGGGCC-EEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHH-HHSSSCHHHH
T ss_pred cchhhccCCCCCcEEEEEcCccCCCCcccee-EEEEECHHHhhhhhhcccccccccchhHHHHHHHHhh-hcCCCCHHHH
Confidence 11 2467899999999999999998 99999988887 6 5443331 1123333333
Q ss_pred HHHHHHHccCCc----HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013210 287 KVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362 (447)
Q Consensus 287 ~~a~~~~~~~~~----l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~ 362 (447)
.++..++..... +..+.+++.++++++.+.|++++..+.++.-...|. ..|.++++.+++. +.
T Consensus 317 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~ 383 (437)
T 3g0t_A 317 WGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPL------------ADGFYFTVGYKGM-DS 383 (437)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEEC------------CSSSEEEEEETTC-CH
T ss_pred HHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCC------------ceeEEEEEecCCC-CH
Confidence 344334433222 677788899999999999998866655211000010 1456889998732 35
Q ss_pred HHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..+.+.|... | +.++.|..+ .. ..++.+|||++ .. +++.++.+.++|.++
T Consensus 384 ~~l~~~L~~~---g-i~v~~~~~~--------~~-------------~~~~~iRis~~-~~-~~e~i~~~~~~l~~~ 433 (437)
T 3g0t_A 384 SKLIEKFVRY---G-MCAITLKTT--------GS-------------KRNEAMRICTS-LL-PESQFPDLEKRLQML 433 (437)
T ss_dssp HHHHHHHHHT---T-EECEESTTT--------TC-------------CCTTCEEEECS-SS-CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHc---C-eEEeecccc--------CC-------------CCCCEEEEEEe-cC-CHHHHHHHHHHHHHH
Confidence 6677777653 3 455544221 10 11377999999 54 445556666666554
No 62
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=1.6e-28 Score=245.39 Aligned_cols=288 Identities=16% Similarity=0.168 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhC--------C-CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALEG--------T-EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~-~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|++++ . +.+++|+||++|+..++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~ 137 (410)
T 3e2y_A 63 HPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVR-----MAGAVPVFIP 137 (410)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEe
Confidence 3578888888875 2 679999999999999999999999999999999999987763 2566776665
Q ss_pred CC----------------CHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013210 172 IS----------------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 172 ~~----------------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~- 231 (447)
.+ |+++|++++ ++++++|++++|+||||.+. ++++|+++|++||+++|+|++|+.+.+.
T Consensus 138 ~~~~~~~g~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~ 216 (410)
T 3e2y_A 138 LRSKPTDGMKWTSSDWTFDPRELESKF-SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTG 216 (410)
T ss_dssp CEECCCCSSCCBGGGEECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred ccccccccccccccCCcCCHHHHHhhc-CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCC
Confidence 43 899999999 77899999999999999995 6889999999999999999999655432
Q ss_pred -----ccC----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--------
Q 013210 232 -----PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-------- 294 (447)
Q Consensus 232 -----~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-------- 294 (447)
... .+.++++.|+||.+|++|.|+ ||+++++++++.+....... ...++.+.+.++...+.
T Consensus 217 ~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~ 294 (410)
T 3e2y_A 217 HTHVKIATLPGMWERTITIGSAGKTFSVTGWKL-GWSIGPAHLIKHLQTVQQNS-FYTCATPLQAALAEAFWIDIKRMDD 294 (410)
T ss_dssp CCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCC-EEEECCHHHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHTTTTS
T ss_pred CCCCCHHHcCCccCeEEEEecchhhcCCCCceE-EEEEECHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHhhhccccc
Confidence 111 246799999999999999998 99999999998887665411 12333333444444443
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH-----------HHH
Q 013210 295 RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE-----------KAN 363 (447)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~-----------~~~ 363 (447)
...++....+++.++++++.+.|++++..+..|. .|.++++.+.... ...
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (410)
T 3e2y_A 295 PECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPD-------------------GGYFIIADVSSLGADLSDMNSDEPYDY 355 (410)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS-------------------BSSEEEEECGGGCCCCTTCCSSCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC-------------------ccEEEEEEchhhhcccccccccccCHH
Confidence 1344666777889999999999998877766553 4567888775210 122
Q ss_pred HHHHHh-hcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 364 RLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 364 ~l~~~l-~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+...+ .. .| +.++.|+.+..- .... ..++.||||++ . +++.++.+.++|++
T Consensus 356 ~~~~~ll~~---~g-v~v~~g~~f~~~----------~~~~------~~~~~iRis~~-~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 356 KFVKWMTKH---KK-LTAIPVSAFCDS----------KSKP------HFEKLVRFCFI-K--KDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHHHHHH---HS-EECEEGGGGSCT----------TTHH------HHTTEEEEECC-C--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---cC-EEEeCchhhCCC----------CCCC------CCCCEEEEEEc-C--CHHHHHHHHHHHHh
Confidence 444433 33 23 566666332110 0000 01588999999 6 56656666665554
No 63
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.97 E-value=4.9e-29 Score=246.34 Aligned_cols=284 Identities=18% Similarity=0.156 Sum_probs=205.1
Q ss_pred chHHHHHHHHHHHh----CC----C-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 99 PTVLNLSRQMAALE----GT----E-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 99 ~~~~~l~~~ia~l~----g~----~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
....++++.+|+++ |. + .+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~ 137 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAAR-----VASLRTFL 137 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HTTCEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHH-----HcCCEEEE
Confidence 35678999999987 75 3 79999999999999999999999999999999999887763 25778877
Q ss_pred eCC-----CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC--
Q 013210 170 VDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR-- 234 (447)
Q Consensus 170 v~~-----~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~~-- 234 (447)
++. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+ +...
T Consensus 138 ~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 216 (376)
T 2dou_A 138 IPLREDGLADLKAVPEGV-WREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALP 216 (376)
T ss_dssp ECBCTTSSBCGGGSCHHH-HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGST
T ss_pred eeCCCCCCCCHHHHHHhh-ccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcC
Confidence 775 2778888888 567999999999999999987 67889999999999999999955432 2222
Q ss_pred --CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHH
Q 013210 235 --LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRAL 311 (447)
Q Consensus 235 --~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~ 311 (447)
.+.++++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++... +++....+++.++++
T Consensus 217 ~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 294 (376)
T 2dou_A 217 GAKERVVELFSLSKSYNLAGFRL-GFALGSEEALARLERVKGVI-DFNQYAGVLRMGVEALKTPKEVVRGYARVYRERAL 294 (376)
T ss_dssp TGGGTEEEEEEHHHHHTCGGGCC-EEEEECHHHHHHHHHHHHHH-CCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecchhhcCChhhee-EEEecCHHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 257899999999999899998 99999999998887655421 1122333333444444432 235556677888999
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
++.+.|+++ ..+..|. .|.++++.++...+...+.+.|... | +.+..|..+
T Consensus 295 ~l~~~L~~~-~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~f----- 345 (376)
T 2dou_A 295 GMAEALKGV-LSLLPPR-------------------ATMYLWGRLPEGVDDLEFGLRLVER---G-VALAPGRGF----- 345 (376)
T ss_dssp HHHHHHTTT-SEECCCC-------------------BSSEEEEECCTTCCHHHHHHHHHHT---T-EECEEGGGG-----
T ss_pred HHHHHHHHh-cCccCCC-------------------eeEEEEEECCCCCCHHHHHHHHHHC---C-EEEcCchhh-----
Confidence 999999886 5443221 3457889987432245677777652 3 455555221
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.. ..++.+|||++ . +++.++.+.+.|++
T Consensus 346 ---~~-------------~~~~~~Ris~~-~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 346 ---GP-------------GGKGFVRIALV-R--PLEELLEAAKRIRE 373 (376)
T ss_dssp ---CG-------------GGTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ---CC-------------CCCCeEEEEec-C--CHHHHHHHHHHHHH
Confidence 00 02478999999 6 34445555444443
No 64
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.97 E-value=1.8e-28 Score=243.17 Aligned_cols=285 Identities=15% Similarity=0.138 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+++++ | .+ .+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++
T Consensus 69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~ 143 (386)
T 1u08_A 69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIA-----LSGGIVKRMA 143 (386)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEee
Confidence 356778888774 5 35 89999999999999999999999999999999999887663 2577777776
Q ss_pred C------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------cc---
Q 013210 172 I------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PA--- 233 (447)
Q Consensus 172 ~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~--- 233 (447)
. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+. ..
T Consensus 144 ~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 222 (386)
T 1u08_A 144 LQPPHFRVDWQEFAALL-SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHP 222 (386)
T ss_dssp CCTTTCCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSH
T ss_pred cCcccCcCCHHHHHHhh-cccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhccc
Confidence 5 3899999999 778999999999999999986 689999999999999999999654331 11
Q ss_pred -CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHH
Q 013210 234 -RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRAL 311 (447)
Q Consensus 234 -~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~ 311 (447)
..++|+++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++... +.+....+++.++++
T Consensus 223 ~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T 1u08_A 223 QLRERAVAVSSFGKTYHMTGWKV-GYCVAPAPISAEIRKVHQYL-TFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRD 300 (386)
T ss_dssp HHHTTEEEEEEHHHHTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHH
T ss_pred CccCcEEEEecchhhcCCcccce-EEEEcCHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2368999999999999899998 99999999988887655421 1223333333343444432 335556677889999
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
++.+.|++.+.++..|. .|.++++.++.. .+...+.+.|.. +.| +.+..|..+.
T Consensus 301 ~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~~f~-- 356 (386)
T 1u08_A 301 ILVNALNESRLEILPCE-------------------GTYFLLVDYSAVSTLDDVEFCQWLTQ--EHG-VAAIPLSVFC-- 356 (386)
T ss_dssp HHHHHTTSSSCEECCCC-------------------BSSEEEEECTTTCCSCHHHHHHHHHH--HSC-EECEEGGGGC--
T ss_pred HHHHHHHHCCCeecCCC-------------------ceEEEEEecCCCCCCCHHHHHHHHHH--hCC-EEEeCchHhC--
Confidence 99999988766654332 356899998742 224566665542 123 4555442110
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
.. ...++.+|||++ . +++.++.+.+.|+
T Consensus 357 ---~~--------------~~~~~~iRis~~-~--~~~~i~~~~~~l~ 384 (386)
T 1u08_A 357 ---AD--------------PFPHKLIRLCFA-K--KESTLLAAAERLR 384 (386)
T ss_dssp ---SS--------------CCCSCEEEEECC-S--CHHHHHHHHHHHT
T ss_pred ---CC--------------CCCCCEEEEEEc-C--CHHHHHHHHHHHh
Confidence 00 012578999999 5 4555555555543
No 65
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=8.1e-29 Score=246.08 Aligned_cols=296 Identities=15% Similarity=0.137 Sum_probs=210.7
Q ss_pred ccCCCCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh--HHHHHHhhcCcccCeeE
Q 013210 93 YSRHFNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITT 167 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~~ 167 (447)
|+....+..+++++.+++++|.+ .+++|+||++|+.+++++++++||+|+++.++|++ +...+. . .|.++
T Consensus 61 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~----~-~g~~~ 135 (393)
T 1vjo_A 61 LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG----R-YGADV 135 (393)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH----H-TTCEE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHH----H-cCCce
Confidence 43333456789999999999875 69999999999999999999999999999999998 655542 2 57888
Q ss_pred EEeCC-----CCHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeE
Q 013210 168 TFVDI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADV 239 (447)
Q Consensus 168 ~~v~~-----~d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di 239 (447)
..++. .|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+ ....+....++|+
T Consensus 136 ~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di 214 (393)
T 1vjo_A 136 RTISKPWGEVFSLEELRTAL-ETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDL 214 (393)
T ss_dssp EEEECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSE
T ss_pred EEEecCCCCCCCHHHHHHHH-hhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccE
Confidence 88775 3899999999 55 79999999999999999999999999999999999999994 2233334457899
Q ss_pred EEeCCCccccCCCCeeEEEEEcChHHHHHHHHH----hhh------------hhhhcCCCcc---HHHHHHHHccC--Cc
Q 013210 240 VVHSISKFISGGADIIAGAVCGPANLVNSMMDL----HQG------------ALMLLGPTMN---PKVAFELSERI--PH 298 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~----~~~------------~~~~~g~~~~---~~~a~~~~~~~--~~ 298 (447)
++.|+||++++++ ++ |+++.++++++.+... ... ......++.+ +.++..++..+ ..
T Consensus 215 ~~~s~sK~l~~~~-~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~ 292 (393)
T 1vjo_A 215 AYSCSQKGLGCSP-GA-SPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEG 292 (393)
T ss_dssp EECCSSSTTCSCS-SC-EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEcCcccccCCC-ce-EEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 9999999998887 67 9999999888777432 000 0011111222 22223333322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013210 299 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 299 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~ 378 (447)
+....+++.++++++.+.|++.+.++..|. . +..+.+++|.++.......+.+.|... +| +
T Consensus 293 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i 353 (393)
T 1vjo_A 293 LANCWQRHQKNVEYLWERLEDIGLSLHVEK---------------E-YRLPTLTTVCIPDGVDGKAVARRLLNE--HN-I 353 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBSSCG---------------G-GBCSSEEEEECCTTCCHHHHHHHHHHH--HC-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCCc---------------c-ccCCcEEEEEcCCCCCHHHHHHHHHhh--CC-E
Confidence 456677889999999999988765554332 0 013458899886322356677777652 23 4
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHh
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+..|.. +. .++.+||| ++ ..+.++.++.+.++|+++
T Consensus 354 ~v~~g~~--------~~---------------~~~~iRis~~~-~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 354 EVGGGLG--------EL---------------AGKVWRVGLMG-FNSRKESVDQLIPALEQV 391 (393)
T ss_dssp ECEECCG--------GG---------------TTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred EEecCcc--------cc---------------CCCEEEEeCCc-cCChHHHHHHHHHHHHHH
Confidence 5555521 10 24789999 46 556666677777777654
No 66
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.97 E-value=2.4e-28 Score=242.41 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHh----C----CCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ | .+. +++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++
T Consensus 65 ~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~ 139 (389)
T 1gd9_A 65 LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-----LAGGKPVEVP 139 (389)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-----HHTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEec
Confidence 367888888887 6 357 9999999999999999998999999999999999887763 2577777776
Q ss_pred CC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC-
Q 013210 172 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR- 234 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~- 234 (447)
.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+. ...
T Consensus 140 ~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 218 (389)
T 1gd9_A 140 TYEEDEFRLNVDELKKYV-TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL 218 (389)
T ss_dssp CCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cCCccCCCCCHHHHHHhc-CcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhc
Confidence 42 789999999 668999999999999999985 889999999999999999999655431 222
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC---cHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCH 308 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~~~~ 308 (447)
.++|+++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++.... .+....+++.+
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 296 (389)
T 1gd9_A 219 DGMFERTITVNGFSKTFAMTGWRL-GFVAAPSWIIERMVKFQMYN-ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDR 296 (389)
T ss_dssp TTCGGGEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHTTT-TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEecChhhcCCcccce-EEEEECHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 257999999999999899998 99999999988887665421 12223333333333443322 34556677889
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhh-cccccccccccccCcc
Q 013210 309 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ-NYAQFGFMAVSLGYYE 386 (447)
Q Consensus 309 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~-~~~~~g~~~vs~G~~~ 386 (447)
+++++.+.|++++.++..|. .|.++++.++. ......+.+.|. . .| +.+..|..+
T Consensus 297 ~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---~g-i~v~~g~~~ 353 (389)
T 1gd9_A 297 RRKLVWKRLNEMGLPTVKPK-------------------GAFYIFPRIRDTGLTSKKFSELMLKE---AR-VAVVPGSAF 353 (389)
T ss_dssp HHHHHHHHHHHTTCCCCCCC-------------------BTTEECCBCGGGTCCHHHHHHHHHHH---TC-EECEEGGGG
T ss_pred HHHHHHHHHHHcCCeecCCC-------------------eeeEEEEeccCCCCCHHHHHHHHHHh---CC-EEEeCchhh
Confidence 99999999988765443221 34467777752 112456777765 4 23 455544221
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. . ..++.+|||++ . +++.++.+.+.|.++
T Consensus 354 ~--------~-------------~~~~~iRi~~~-~--~~~~i~~~l~~l~~~ 382 (389)
T 1gd9_A 354 G--------K-------------AGEGYVRISYA-T--AYEKLEEAMDRMERV 382 (389)
T ss_dssp C--------G-------------GGTTBEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred C--------C-------------CCCCeEEEEec-C--CHHHHHHHHHHHHHH
Confidence 0 0 02478999999 6 344455554444443
No 67
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.2e-28 Score=244.30 Aligned_cols=308 Identities=14% Similarity=0.125 Sum_probs=215.3
Q ss_pred cccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCC-----
Q 013210 66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSS----- 137 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~----- 137 (447)
++++.+.+ +.+.+.+...++++. .|. ......+++++.+++++|.+ .+++|+||++|+.++++++..+
T Consensus 39 ~~~~~~~v~~a~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~ 114 (397)
T 3f9t_A 39 CSNVLPITRKIVDIFLETNLGDPG---LFK-GTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKR 114 (397)
T ss_dssp CCCCCTHHHHHHHHHTTCCTTSGG---GBH-HHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHhhcCCCcc---cCh-hHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 34444554 666666655444432 111 22455678999999999874 4799999999999999988765
Q ss_pred --------CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC-CceEEEEEcCCCCCcccc
Q 013210 138 --------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVA 203 (447)
Q Consensus 138 --------gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~ 203 (447)
||+|+++.++|+++...+. ..|.++++++.+ |+++|++++ ++ ++++|++++|+||||.+.
T Consensus 115 ~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~ 188 (397)
T 3f9t_A 115 RKGLSKNEHPKIIVPITAHFSFEKGRE-----MMDLEYIYAPIKEDYTIDEKFVKDAV-EDYDVDGIIGIAGTTELGTID 188 (397)
T ss_dssp HTTCCCCSSCEEEEETTCCTHHHHHHH-----HHTCEEEEECBCTTSSBCHHHHHHHH-HHSCCCEEEEEBSCTTTCCBC
T ss_pred hhcccCCCCeEEEECCcchhHHHHHHH-----HcCceeEEEeeCCCCcCCHHHHHHHH-hhcCCeEEEEECCCCCCCCCC
Confidence 8999999999999887773 258888888876 899999999 55 899999999999999999
Q ss_pred CHHHHHHHHHhcCCEEEEeCCCCCCC----------------CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH
Q 013210 204 NIPELSRLAHDKGVTVVVDNTFSPLV----------------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 267 (447)
Q Consensus 204 ~l~~I~~la~~~gi~livD~~~~~~~----------------~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~ 267 (447)
|+++|.++|++||+++|+|++|+.+. ++... ++|+++.|+||+++++. ++|++++.++.+.+
T Consensus 189 ~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~-~~g~~~~~~~~~~~ 266 (397)
T 3f9t_A 189 NIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPI-PSGGILFKDIGYKR 266 (397)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCS-SCEEEEESSGGGGG
T ss_pred CHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCC-CceEEEEeCHHHHH
Confidence 99999999999999999999995322 12223 78999999999987543 56444455555554
Q ss_pred HHHHHhhhhhhh------cCCC--ccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHH
Q 013210 268 SMMDLHQGALML------LGPT--MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 337 (447)
Q Consensus 268 ~l~~~~~~~~~~------~g~~--~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l 337 (447)
.+..... .... .+.. ......++++. ....+....++..++++++.+.|++++..+..+.
T Consensus 267 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------- 336 (397)
T 3f9t_A 267 YLDVDAP-YLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEP--------- 336 (397)
T ss_dssp GTCEECT-TSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC---------
T ss_pred hhccCCc-cccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCC---------
Confidence 4321111 0000 0111 12222222222 2234566777888999999999998865544332
Q ss_pred HHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 013210 338 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 417 (447)
Q Consensus 338 ~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRi 417 (447)
.+++++|.+++ ...+.+.|... | +.++.|. .++.+||
T Consensus 337 ----------~~~~~~~~~~~---~~~~~~~l~~~---g-i~v~~~~--------------------------~~~~~Ri 373 (397)
T 3f9t_A 337 ----------ILNIVAIEDED---YKEVCKKLRDR---G-IYVSVCN--------------------------CVKALRI 373 (397)
T ss_dssp ----------SSSEEEEECTT---HHHHHHHHHHT---T-CBCEECS--------------------------SSSEEEE
T ss_pred ----------CccEEEEEeCC---HHHHHHHHHhC---C-eEEeccC--------------------------CCCEEEE
Confidence 35588888875 34566666652 3 3444331 1478999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHh
Q 013210 418 SVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 418 S~g~~~~~~~~i~~l~~al~~~ 439 (447)
|++ ...+++.++.+.++|+++
T Consensus 374 ~~~-~~~~~e~i~~~~~~l~~~ 394 (397)
T 3f9t_A 374 VVM-PHIKREHIDNFIEILNSI 394 (397)
T ss_dssp ECC-TTCCHHHHHHHHHHHHHH
T ss_pred EEc-CCCCHHHHHHHHHHHHHh
Confidence 999 888888888888888765
No 68
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.96 E-value=3.3e-28 Score=244.78 Aligned_cols=289 Identities=15% Similarity=0.166 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+++++ | .+ .+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~ 153 (429)
T 1yiz_A 79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVK-----AAGGIPRFIP 153 (429)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEe
Confidence 356777777775 5 35 89999999999999999999999999999999999887763 2566766665
Q ss_pred C---------------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 172 I---------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 172 ~---------------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
. .|+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~ 232 (429)
T 1yiz_A 154 LKPNKTGGTISSADWVLDNNELEALF-NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF 232 (429)
T ss_dssp CBCCCSSSSEEGGGCBCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS
T ss_pred CCcccccccccccCcccCHHHHHHHh-ccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC
Confidence 3 3789999999 778999999999999999985 889999999999999999999654321
Q ss_pred ----cc----CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--------
Q 013210 232 ----PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-------- 295 (447)
Q Consensus 232 ----~~----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-------- 295 (447)
.. ..++|+++.|+||.+|++|.|+ |++++++++++.+...... ....++.+.+.++..++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~ 310 (429)
T 1yiz_A 233 EHIRICTLPGMWERTITIGSAGKTFSLTGWKI-GWAYGPEALLKNLQMVHQN-CVYTCATPIQEAIAVGFETELKRLKSP 310 (429)
T ss_dssp CCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-EEEESCHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHTTTTST
T ss_pred CCcChhhccCCcCceEEEecchhccCCCCcce-EEEEeCHHHHHHHHHHHhh-cccCCChHHHHHHHHHHhcccccccch
Confidence 11 2368999999999999999998 9999999998888765431 1123344444444444443
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------------HHHH
Q 013210 296 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------------EKAN 363 (447)
Q Consensus 296 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------------~~~~ 363 (447)
.+.+....+++.++++++.+.|++++..+..|. .|.++++.++.. ....
T Consensus 311 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (429)
T 1yiz_A 311 ECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ-------------------GGYFMVADWSSLDSKVDLTQETDARKDY 371 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECS-------------------BSSEEEEECCSSCTTTTCCSSSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-------------------cceEEEEEcccccccccccccccCCCHH
Confidence 334566667788999999999988776655332 356899998742 2355
Q ss_pred HHHHHhh-cccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 364 RLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 364 ~l~~~l~-~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+.+.|. . .| +.+..|..+.. .. . .+..++.+|||++ . +++.++.+.+.|+++
T Consensus 372 ~l~~~l~~~---~g-v~v~~g~~f~~---~~-~------------~~~~~~~iRis~~-~--~~e~i~~~l~~l~~~ 425 (429)
T 1yiz_A 372 RFTKWMTKS---VG-LQGIPPSAFYS---EP-N------------KHLGEDFVRYCFF-K--KDENLQKAAEILRKW 425 (429)
T ss_dssp HHHHHHHHH---TS-EECBCGGGGSC---GG-G------------GGGTTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CC-EEEeCchHhCC---Cc-c------------cCCCCCeEEEEec-C--CHHHHHHHHHHHHHh
Confidence 6776664 3 23 45544422100 00 0 0112578999999 5 456666666666554
No 69
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.96 E-value=2.8e-28 Score=239.28 Aligned_cols=278 Identities=13% Similarity=0.160 Sum_probs=201.7
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
++...++++.+|++++. +.+++|+||++|++++++++ |+|+++.|.|+++...+. ..|.++.+++.+
T Consensus 60 ~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~ 130 (361)
T 3ftb_A 60 DVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINAK-----KHGVSVVFSYLDEN 130 (361)
T ss_dssp CTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHH-----HTTCEEEEEECCTT
T ss_pred CccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHH-----HcCCeEEEeecCcc
Confidence 34457899999999985 56999999999999999876 899999999999887773 258888887754
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC----Ccc----CCCCeE
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL----SPA----RLGADV 239 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~----~~~----~~g~di 239 (447)
++++|++++ ++ +++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.. .+. ..+.++
T Consensus 131 ~~~~~~~l~~~l-~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i 208 (361)
T 3ftb_A 131 MCIDYEDIISKI-DD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLF 208 (361)
T ss_dssp SCCCHHHHHHHT-TT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEE
T ss_pred cCCCHHHHHHhc-cC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEE
Confidence 679999999 55 999999999999999986 66788888899999999999965443 111 225678
Q ss_pred EEeCCCccccCCCCeeEEEEE-cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013210 240 VVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 318 (447)
++.|+||.+|++|.++ |+++ .++++++.+...... ...+.+.+.++..++...+.+..+.+++.++++++.+.|+
T Consensus 209 ~~~s~sK~~~~~G~r~-g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 284 (361)
T 3ftb_A 209 IIRAMTKFFAMPGIRF-GYGITNNKEIAAKIKAKQNP---WNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELN 284 (361)
T ss_dssp EEEESSSTTSCGGGCC-EEEEESCHHHHHHHHTTSCT---TCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeChhhcCCCCcce-eEEEeCCHHHHHHHHhhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 8877 899998888765441 2222222333333333323355667778899999999999
Q ss_pred hCCC-e-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccccc
Q 013210 319 KLGL-K-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 319 ~~~~-~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
+++. . +. +. .|+++++.++. .+...+.+.|... | +.++.|..+ .
T Consensus 285 ~~~~~~~~~-~~-------------------~~~~~~~~~~~-~~~~~l~~~l~~~---g-i~v~~g~~~--------~- 330 (361)
T 3ftb_A 285 KIGFIKRVF-SP-------------------HANFVLCRLEN-ISGEKLYDSLLKE---D-IVIRRCCNF--------I- 330 (361)
T ss_dssp HSSSEEEEE-CC-------------------SSSEEEEEESS-SCHHHHHHHHHTT---T-EECEECTTS--------T-
T ss_pred hCCCCceec-CC-------------------CCeEEEEEcCC-CCHHHHHHHHHHC---C-eEEeeCccC--------C-
Confidence 8754 4 43 22 35688899875 2356677777653 3 565655321 1
Q ss_pred CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 397 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 397 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+..++.+|||++ . .+.+++|.++|+++.
T Consensus 331 ------------~~~~~~iRis~~-~---~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 331 ------------GLDDSFVRFAIK-D---EKKNTKFLRALKGVE 358 (361)
T ss_dssp ------------TCCTTEEEEECC-C---HHHHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEEcC-C---HHHHHHHHHHHHHHH
Confidence 123588999999 3 233455555555543
No 70
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.96 E-value=2.3e-28 Score=240.52 Aligned_cols=277 Identities=13% Similarity=0.107 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC---
Q 013210 100 TVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD--- 174 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d--- 174 (447)
...++++.+|++++.+ .+++|+||++|+.++++++ +||+|+++.|.|+++...+. ..|.++..++.+.
T Consensus 60 ~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~ 132 (364)
T 1lc5_A 60 DYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALA-----QSGCEIRRWSLREADG 132 (364)
T ss_dssp TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGT
T ss_pred CHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHH-----HcCCeEEEEeCCcccc
Confidence 4578999999999864 6999999999999999988 67999999999999887763 2577887777642
Q ss_pred ---HHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC---Ccc----CCCCeEEE
Q 013210 175 ---HEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL---SPA----RLGADVVV 241 (447)
Q Consensus 175 ---~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~---~~~----~~g~di~~ 241 (447)
++++.+.+ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+ .+. ..+.++++
T Consensus 133 ~~~l~~~~~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (364)
T 1lc5_A 133 WQLTDAILEAL-TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVL 211 (364)
T ss_dssp TCCCTTHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEE
T ss_pred cchhHHHHHhc-cCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEE
Confidence 35455556 578899999999999999998 89999999999999999999955432 112 24689999
Q ss_pred eCCCccccCCCCeeEEEEE-cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 242 HSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
.|+||++|++|.|+ ||++ .++++++.+...... ...+.+.+.++..++...+++....+++.++++++.+.|+++
T Consensus 212 ~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 287 (364)
T 1lc5_A 212 RSLTKFYAIPGLRL-GYLVNSDDAAMARMRRQQMP---WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL 287 (364)
T ss_dssp EESTTTTTCTTTCC-EEEECCCHHHHHHHHHHSCT---TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EECchhhcCCccce-EEEEECCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999899998 9998 999998888765541 222223233333333322235556667888899999999887
Q ss_pred C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCC
Q 013210 321 G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399 (447)
Q Consensus 321 ~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~ 399 (447)
+ ..+. |. .|+++++.++.. ...+.+.|... | +.+..|..+ .
T Consensus 288 ~~~~~~-~~-------------------~g~~~~~~~~~~--~~~l~~~l~~~---g-i~v~~g~~~--------~---- 329 (364)
T 1lc5_A 288 PLLTVY-PG-------------------RANYLLLRCERE--DIDLQRRLLTQ---R-ILIRSCANY--------P---- 329 (364)
T ss_dssp TTEEEC-CC-------------------SSSEEEEEESCT--TCCHHHHHHTT---T-EECEECTTS--------T----
T ss_pred CCCEEC-CC-------------------CCeEEEEECCCc--HHHHHHHHHHC---C-cEEeeCccc--------C----
Confidence 3 3432 22 356888888742 33566666642 3 455555221 0
Q ss_pred CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 400 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++++|||++ . .+.++.+.++|+++
T Consensus 330 ---------~~~~~~iRis~~-~---~~~~~~l~~~l~~~ 356 (364)
T 1lc5_A 330 ---------GLDSRYYRVAIR-S---AAQNERLLAALRNV 356 (364)
T ss_dssp ---------TCCTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred ---------CCCCCEEEEEeC-C---HHHHHHHHHHHHHH
Confidence 123578999999 4 33345555555544
No 71
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.96 E-value=5.4e-28 Score=240.71 Aligned_cols=288 Identities=12% Similarity=0.077 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|+++ | .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~ 142 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-----NQERKIIECEL 142 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----TTTCEEEECCC
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEeccc
Confidence 467888888774 5 3569999999999999999999999999999999999887763 25777777765
Q ss_pred --------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC-
Q 013210 173 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR- 234 (447)
Q Consensus 173 --------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~- 234 (447)
.|+++|+++++++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+. ...
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (399)
T 1c7n_A 143 LEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI 222 (399)
T ss_dssp EEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred ccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHc
Confidence 37999999994378999999999999999998 899999999999999999999654321 222
Q ss_pred ----CCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHH
Q 013210 235 ----LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH 308 (447)
Q Consensus 235 ----~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~ 308 (447)
.+.++++.|+||.+|++|.|+ ||++.+ +++++.+............+.+.+.++..++.. .+.+....+++.+
T Consensus 223 ~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 301 (399)
T 1c7n_A 223 DEQLADKTITFTAPSKTFNIAGMGM-SNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDK 301 (399)
T ss_dssp CHHHHTTEEEEECSHHHHTCGGGCC-EEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CccccCcEEEEEeChhhccccchhe-EEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 256799999999999899998 999886 678888876654221112233333333333332 2335556667889
Q ss_pred HHHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-cccccccccccccC
Q 013210 309 RALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQFGFMAVSLGY 384 (447)
Q Consensus 309 ~~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~-~~~~~g~~~vs~G~ 384 (447)
+++++.+.|++ ++ ..+..| ..|.++++.++.. .....+.+.|. . .| +.+..|.
T Consensus 302 ~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g-i~v~~g~ 358 (399)
T 1c7n_A 302 NQRIVKDFFEVNHPEIKAPLI-------------------EGTYLQWIDFRALKMDHKAMEEFMIHK---AQ-IFFDEGY 358 (399)
T ss_dssp HHHHHHHHHHHHCTTSBCCCC-------------------SBSSEEEEECGGGCCCHHHHHHHHHHT---TC-CCCEEGG
T ss_pred HHHHHHHHHHhhCCCCeEecC-------------------CceEEEEEEcccCCCCHHHHHHHHHHh---CC-EEEeCcc
Confidence 99999999987 53 333221 1234667888631 12456777775 4 23 4555553
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHHh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSRM 439 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~~ 439 (447)
.+. + ..++.+|||++ .. ++++.++.|.++++++
T Consensus 359 ~~~----~-----------------~~~~~iRis~~-~~~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 359 IFG----D-----------------GGIGFERINLA-APSSVIQESLERLNKALKDL 393 (399)
T ss_dssp GGC----G-----------------GGTTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred ccC----C-----------------CCCCeEEEEec-cCHHHHHHHHHHHHHHHHHH
Confidence 211 0 12478999999 64 2333344444444443
No 72
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.96 E-value=6.1e-28 Score=239.99 Aligned_cols=287 Identities=13% Similarity=0.099 Sum_probs=202.3
Q ss_pred HHHHHHHHHHh----C-----CC-eEEEeCChHHHHHHHHHHhcCCC-----CeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 102 LNLSRQMAALE----G-----TE-AAYCTASGMSAISSVLMQLCSSG-----GHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 102 ~~l~~~ia~l~----g-----~~-~~~~tsggt~A~~~al~~l~~~g-----d~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
.++++.+++++ | .+ .+++|+||++|+.+++++++++| |+|+++.|.|+++...+. ..|.+
T Consensus 69 ~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~-----~~g~~ 143 (396)
T 3jtx_A 69 PELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATL-----LGGGE 143 (396)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHH-----HTTCE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHH-----HcCCE
Confidence 45666666654 5 45 89999999999999999999986 799999999999887763 26778
Q ss_pred EEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCCc---c-
Q 013210 167 TTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLSP---A- 233 (447)
Q Consensus 167 ~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~~---~- 233 (447)
+..++.+ |+++|++++ ++++++|++++|+||||.+++.+ +|+++|++||+++|+|++|+.+.+.. .
T Consensus 144 ~~~v~~~~~g~~~d~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~ 222 (396)
T 3jtx_A 144 IHFANCPAPSFNPDWRSISEEV-WKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLG 222 (396)
T ss_dssp EEEEECCTTTCCCCGGGSCHHH-HHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCC
T ss_pred EEEeecCCCCCccCHHHHHHhh-ccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCch
Confidence 8777653 778888888 66899999999999999998755 58999999999999999996654321 1
Q ss_pred ----------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 234 ----------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 234 ----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
..+.++++.|+||.++++|.|+ ||+++++++++.+....... ....+.+.+.++..++...+++....
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~ 300 (396)
T 3jtx_A 223 CLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRS-GFVAGDAELLKNFLLYRTYH-GSAMSIPVQRASIAAWDDEQHVIDNR 300 (396)
T ss_dssp HHHHHHHTTCCCTTEEEEEESTTTSSCGGGCC-EEEEECHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHhhhhhcccccCcEEEEeccccccCCcccce-EEEEeCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHhCCHHHHHHHH
Confidence 2578899999999999999998 99999999998887665411 12223333444444454444566677
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 304 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+++.++++.+.+.|++. ..+..| ..|.++++.++.. ....+...|.. +.| +.++.|
T Consensus 301 ~~~~~~~~~l~~~l~~~-~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~~l~~--~~g-i~v~~g 356 (396)
T 3jtx_A 301 RLYQEKFERVIPILQQV-FDVKLP-------------------DASFYIWLKVPDG-DDLAFARNLWQ--KAA-IQVLPG 356 (396)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCCC-------------------SSSSEEEEECTTS-CHHHHHHHHHH--HHC-EECEEG
T ss_pred HHHHHHHHHHHHHHHhc-CCccCC-------------------CeeEEEEEECCCC-CHHHHHHHHHH--HCC-EEEeCC
Confidence 77888999999999765 222222 1456899999742 24556666632 123 566666
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..+..- +. . .....+.+|||++ . +++.++.+.+.|.+
T Consensus 357 ~~~~~~----~~--~---------~~~~~~~iRis~~-~--~~~~i~~~l~~l~~ 393 (396)
T 3jtx_A 357 RFLARD----TE--Q---------GNPGEGYVRIALV-A--DVATCVKAAEDIVS 393 (396)
T ss_dssp GGGCCC----CT--T---------CCTTTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred hHhCCc----cc--c---------cCCCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 432210 00 0 0123589999999 6 44545555555543
No 73
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.96 E-value=1.6e-28 Score=246.58 Aligned_cols=296 Identities=15% Similarity=0.081 Sum_probs=209.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhC----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
+.|+....+..+.+++.+++..+ .+.++||+||++|+++++++++++||+|++..|.|+++...+. ..|.+
T Consensus 92 ~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~-----~~g~~ 166 (421)
T 3l8a_A 92 FGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIR-----LNDHR 166 (421)
T ss_dssp SSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHH-----HTTEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-----HCCCE
Confidence 55666556666777777777776 3569999999999999999999999999999999999887763 25777
Q ss_pred EEEeCCC--------CHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013210 167 TTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS---- 231 (447)
Q Consensus 167 ~~~v~~~--------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~---- 231 (447)
+..++.+ |+++|++++.++++++|++++|+||+|.+. ++++|+++|++||+++|+|++|+.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~ 246 (421)
T 3l8a_A 167 LVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTH 246 (421)
T ss_dssp EEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred EEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 7776643 899999999437899999999999999994 6889999999999999999999655332
Q ss_pred --ccC-----CCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHH
Q 013210 232 --PAR-----LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLR 302 (447)
Q Consensus 232 --~~~-----~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~ 302 (447)
... .+.++++.|+||.+|++|.++ |+++.+ +++.+.+...........++.+.+.++..++... +++...
T Consensus 247 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~-G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~ 325 (421)
T 3l8a_A 247 HSLNTLDASYKDFTIILSSATKTFNIAGTKN-SFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEEL 325 (421)
T ss_dssp CCGGGSCTTGGGTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccHHHcCchhcCcEEEEEeChhhccCchhhe-EeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence 111 256799999999999899998 888887 8888888766542222233334444444444422 335667
Q ss_pred HHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccc
Q 013210 303 MKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~v 380 (447)
.+++.++++++.+.|+++ +..+..|. .+.++++.++.. .....+.+.|... .| +.+
T Consensus 326 ~~~~~~~~~~l~~~L~~~~~i~~~~~~-------------------~~~~~~v~~~~~~~~~~~l~~~l~~~--~g-i~v 383 (421)
T 3l8a_A 326 KTVIEGNIKLVIKELEAKTKIKVMEPE-------------------GTYLVWLDFSAYAIAQPQLSEKLQNE--AK-VVL 383 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCEEECCS-------------------BSSEEEEECGGGTCCTTHHHHHHHHT--TC-EEC
T ss_pred HHHHHHHHHHHHHHHHhCCCceEeCCC-------------------eeEEEEEeccccCCCHHHHHHHHHHh--CC-EEE
Confidence 777889999999999886 44554332 234666887631 1245566666421 23 455
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+.|..+ . ...++.+|||++ . +++.++...+.|++
T Consensus 384 ~~g~~f--------~-------------~~~~~~iRi~~~-~--~~~~i~~~l~~l~~ 417 (421)
T 3l8a_A 384 NDGAHF--------G-------------KEGKYFARLNVA-T--PKNTVQEALSRIIS 417 (421)
T ss_dssp EEGGGG--------C-------------GGGTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ECchhh--------C-------------CCCCCEEEEEec-C--CHHHHHHHHHHHHH
Confidence 655321 1 012588999999 5 34445555444443
No 74
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=1.6e-28 Score=243.42 Aligned_cols=288 Identities=15% Similarity=0.180 Sum_probs=209.5
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
+...++++.+++++|.+ .+++|+||++|+.++++++ +++||+|+++.++|+++...+...... .|.++..++.+
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~ 137 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAAT 137 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH-HCCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHH-hCcEEEEEcCCCC
Confidence 56789999999999975 6999999999999999998 789999999999999987654332222 58888888763
Q ss_pred -----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH----hcCCEEEEeCCCCC--CCCCccCCCCeEEEe
Q 013210 174 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH----DKGVTVVVDNTFSP--LVLSPARLGADVVVH 242 (447)
Q Consensus 174 -----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~----~~gi~livD~~~~~--~~~~~~~~g~di~~~ 242 (447)
|+++|++++ ++++++|++++|+||||.+.|+++|.++|+ ++|+++|+|++|+. ...+....++|+++.
T Consensus 138 ~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~ 216 (390)
T 1elu_A 138 LNQGDAAAVLANHL-GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAF 216 (390)
T ss_dssp SSSSCHHHHHHTTC-CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEE
T ss_pred CCccchHHHHHHhc-CCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEc
Confidence 789999999 678999999999999999999999999999 99999999999942 223333457899999
Q ss_pred CCCc-cccCCCCeeEEEEEcChHHHHHHHHHhhhh-------------------hhhcCCCc-c-HHHHHHHHc---cCC
Q 013210 243 SISK-FISGGADIIAGAVCGPANLVNSMMDLHQGA-------------------LMLLGPTM-N-PKVAFELSE---RIP 297 (447)
Q Consensus 243 S~sK-~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------------------~~~~g~~~-~-~~~a~~~~~---~~~ 297 (447)
|+|| .+|+.| + |+++.++++++.+.....+. ....++.. . ..++..++. ...
T Consensus 217 s~~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~ 293 (390)
T 1elu_A 217 TGHKWFAGPAG--V-GGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQG 293 (390)
T ss_dssp ESSSTTCCCTT--C-EEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccCCCc--e-EEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999 555444 5 99998888776654321000 01122221 1 122222222 223
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 376 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g 376 (447)
++....+++.++++++.+.|+++ +.++..|. + +.|+++.|.++.......+.+.|... |
T Consensus 294 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g 353 (390)
T 1elu_A 294 TAEERYQAICQRSEFLWRGLNQLPHVHCLATS----A-------------PQAGLVSFTVDSPLGHRAIVQKLEEQ---R 353 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS----C-------------CSSSEEEEEECSSSCHHHHHHHHHHT---T
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc----c-------------ccccEEEEEcCCCCCHHHHHHHHHHC---C
Confidence 36677788899999999999987 44554432 1 35668999986222245677777642 3
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.+..|. .++.+|||++ ...+++.++.+.++|+++
T Consensus 354 -i~v~~~~--------------------------~~~~iRis~~-~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 354 -IYLRTIA--------------------------DPDCIRACCH-YITDEEEINHLLARLADF 388 (390)
T ss_dssp -EECEEET--------------------------TTTEEEEECC-TTCCHHHHHHHHHHHTTC
T ss_pred -EEEEecC--------------------------CCCeEEEecc-cCCCHHHHHHHHHHHHhh
Confidence 3444331 2478999998 888888888888888765
No 75
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.96 E-value=4.9e-28 Score=244.06 Aligned_cols=285 Identities=17% Similarity=0.146 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 101 VLNLSRQMAALEG----------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 101 ~~~l~~~ia~l~g----------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
..++++.+|++++ .+.+++|+||++|+..++++++++||.|+++.|.|+++...+. ...|.++..+
T Consensus 88 ~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~----~~~g~~~~~~ 163 (435)
T 3piu_A 88 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK----WRTGVEIVPI 163 (435)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT----TTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHH----HhcCCEEEEe
Confidence 4689999999987 5679999999999999999999999999999999998876552 1268888887
Q ss_pred CCC-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc--
Q 013210 171 DIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-- 233 (447)
Q Consensus 171 ~~~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-- 233 (447)
+.+ |+++|++++++ .++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+...
T Consensus 164 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 243 (435)
T 3piu_A 164 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243 (435)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred eCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence 764 89999998832 37899999999999999987 47888899999999999999965333211
Q ss_pred --------C---------CCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc
Q 013210 234 --------R---------LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER 295 (447)
Q Consensus 234 --------~---------~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~ 295 (447)
+ .+.++++.|+||.+|.+|.|+ |++++ ++++.+.+...... ...+.+.+.++...+..
T Consensus 244 ~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 319 (435)
T 3piu_A 244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSSF---GLVSSQTQHLLSAMLSD 319 (435)
T ss_dssp CCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCE-EEEEESCHHHHHHHHHHGGG---SCCCHHHHHHHHHHHHC
T ss_pred cCHHHhccccccccccCCCCCEEEEEeeecccCCCceeE-EEEEeCCHHHHHHHHHHhhc---CCCCHHHHHHHHHHhcC
Confidence 1 233488999999999899998 88887 56777777655441 22333444444444433
Q ss_pred CC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HHHHHH
Q 013210 296 IP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKANRL 365 (447)
Q Consensus 296 ~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~~~~l 365 (447)
.. .+.+..+++.++++++.+.|++.++++..+. .|.++++.++.. .....+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~l~~~~~~~~~~~~~~~ 380 (435)
T 3piu_A 320 KKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGN-------------------AGLFCWVDMRHLLRSNTFEAEMEL 380 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCC-------------------SSSEEEEECGGGSSSSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-------------------eeEEEEEEcccccccCCchhHHHH
Confidence 22 2344556778889999999988876554322 346899998742 134566
Q ss_pred HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 366 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+.|... +| +.+..|..+ . ...++.+|||++ .. +++.++.+.++|.+
T Consensus 381 ~~~l~~~--~g-i~v~~g~~~--------~-------------~~~~~~iRi~~~-~~-~~e~i~~~l~~l~~ 427 (435)
T 3piu_A 381 WKKIVYE--VH-LNISPGSSC--------H-------------CTEPGWFRVCFA-NL-PERTLDLAMQRLKA 427 (435)
T ss_dssp HHHHHHT--SC-EECEEGGGG--------T-------------CSSTTEEEEECS-SS-CHHHHHHHHHHHHH
T ss_pred HHHHHHH--CC-EEEeCCccc--------C-------------CCCCCEEEEEee-CC-CHHHHHHHHHHHHH
Confidence 6666542 34 455555221 1 012578999999 64 34444444444443
No 76
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.96 E-value=6e-28 Score=241.55 Aligned_cols=296 Identities=20% Similarity=0.242 Sum_probs=206.3
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++++.+|+++ | .+ .+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 65 ~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v~~ 139 (411)
T 2o0r_A 65 APLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVA-----MAGAHRVTVPL 139 (411)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH-----HcCCEEEEeec
Confidence 56777777775 5 34 79999999999999999999999999999999999887763 25777776654
Q ss_pred --------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC-
Q 013210 173 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR- 234 (447)
Q Consensus 173 --------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~- 234 (447)
.|+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+. ...
T Consensus 140 ~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 218 (411)
T 2o0r_A 140 VPDGRGFALDADALRRAV-TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF 218 (411)
T ss_dssp EEETTEEECCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cccccCCCCCHHHHHHhh-ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhc
Confidence 3899999999 678999999999999999987 589999999999999999999654331 111
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
.++|+++.|+||.+|++|.|+ |++++++++++.+....... ....+.+.+.++..++... +.+....+++.+++
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 296 (411)
T 2o0r_A 219 DGMAERTITISSAAKMFNCTGWKI-GWACGPAELIAGVRAAKQYL-SYVGGAPFQPAVALALDTEDAWVAALRNSLRARR 296 (411)
T ss_dssp TTTGGGEEEEEEHHHHTTCTTTCE-EEEECCHHHHHHHHHHHHHH-TSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeechhhcCCccceE-EEEeeCHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 367999999999999999998 99999999988887654421 1233444444444444332 23455667788999
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCcccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETL 388 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s~ 388 (447)
+++.+.|++.+..+..|. .|.++++.++.. .+...+.+.|.. +.| +.+..|..+..
T Consensus 297 ~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~~f~~ 354 (411)
T 2o0r_A 297 DRLAAGLTEIGFAVHDSY-------------------GTYFLCADPRPLGYDDSTEFCAALPE--KVG-VAAIPMSAFCD 354 (411)
T ss_dssp HHHHHHHHHHTCEECCCC-------------------BSSEEEEECGGGTCCCHHHHHHHHHH--HHS-EECEEGGGGSC
T ss_pred HHHHHHHHHcCCEecCCC-------------------eeEEEEEecCCCCCCCHHHHHHHHHH--hCC-EEEcChhhhCC
Confidence 999999988766654332 355889988631 124556665532 123 45554522110
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 389 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. ...+++++. ...++.+|||++ . +++.++.+.++|.++.
T Consensus 355 ---~-----~~~~~~~~~--~~~~~~iRis~~-~--~~e~i~~~~~~l~~~~ 393 (411)
T 2o0r_A 355 ---P-----AAGQASQQA--DVWNHLVRFTFC-K--RDDTLDEAIRRLSVLA 393 (411)
T ss_dssp ---C-----C----------CCGGGCEEEECC-S--CHHHHHHHHHHHGGGG
T ss_pred ---C-----ccccccccc--cCCCCeEEEEec-C--CHHHHHHHHHHHHHHH
Confidence 0 000111111 112478999999 5 4556666666666543
No 77
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.96 E-value=5.5e-28 Score=238.66 Aligned_cols=279 Identities=11% Similarity=0.066 Sum_probs=199.3
Q ss_pred HHHHHHHHHHh----CC----CeEEEeCChHHHHHHHHHHhcCC--CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALE----GT----EAAYCTASGMSAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~----g~----~~~~~tsggt~A~~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.++++.+|+++ |. +.+++|+||++|+.+++++++++ ||+|+++.|.|+++...+. ..|.++..++
T Consensus 62 ~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~ 136 (376)
T 3ezs_A 62 ESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAK-----FIKAKSLLMP 136 (376)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHH-----HTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHH-----HcCCEEEEcc
Confidence 56777777765 53 56999999999999999999999 9999999999999887763 2688888887
Q ss_pred CCCHH----HHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc------
Q 013210 172 ISDHE----MVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA------ 233 (447)
Q Consensus 172 ~~d~~----~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~------ 233 (447)
.++.+ ++++++ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.+.+. ..
T Consensus 137 ~~~~~~~~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 215 (376)
T 3ezs_A 137 LTKENDFTPSLNEKE-LQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLA 215 (376)
T ss_dssp CCGGGTSCCCCCHHH-HHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHT
T ss_pred cCCCCCcchhHHhhh-ccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccc
Confidence 65221 566666 557899999999999999987 667788899999999999999665432 11
Q ss_pred ---CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHH
Q 013210 234 ---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 310 (447)
Q Consensus 234 ---~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~ 310 (447)
..+.++++.|+||.+|++|.|+ ||+++++++++.+....... ....+.+.+.++..++...+.+....+++.+++
T Consensus 216 ~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 293 (376)
T 3ezs_A 216 GNEAFKNVLVIHSLSKRSSAPGLRS-GFIAGDSRLLEKYKAFRAYL-GYTSANAIQKASEAAWLDDRHAEFFRNIYANNL 293 (376)
T ss_dssp TCTTCTTEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cccccCcEEEEecchhccCCcccee-EEEeeCHHHHHHHHHHHhhh-cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3578899999999999899998 99999999998887765421 122233333344444444444566667788888
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
+++.+.|+ +.. .| ..|.++++.+++ ...+.+.|.. +.| +.++.|..+..
T Consensus 294 ~~l~~~l~--~~~--~~-------------------~~~~~~~~~~~~---~~~~~~~l~~--~~g-i~v~~g~~~~~-- 342 (376)
T 3ezs_A 294 KLARKIFK--NTL--IY-------------------PYSFYVYLPVQN---GENFAKTLYQ--NEG-IITLPALYLGR-- 342 (376)
T ss_dssp HHHHHHST--TCC--CC-------------------SBSSEEEEECSC---HHHHHHHHHH--HHC-CBCEEGGGGCS--
T ss_pred HHHHHHhc--CCC--CC-------------------CcceEEEEECCC---HHHHHHHHHH--hCC-EEEeCcHHhCC--
Confidence 88888886 322 22 256689999873 4456666653 123 56666632210
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. ...++.+|||++ . +++.++.+.++|.++
T Consensus 343 ----~-------------~~~~~~iRis~~-~--~~~~i~~~l~~l~~~ 371 (376)
T 3ezs_A 343 ----N-------------RIGADYVRLALV-Y--DTPLLEKPLEIIETY 371 (376)
T ss_dssp ----T-------------TTTTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred ----C-------------CCCCCeEEEEEc-C--CHHHHHHHHHHHHHH
Confidence 0 123588999998 5 455566666665544
No 78
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.96 E-value=5.4e-28 Score=241.36 Aligned_cols=289 Identities=16% Similarity=0.180 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|+++ | .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 77 ~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~ 151 (407)
T 2zc0_A 77 IPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFE-----QLGAKIEGVPV 151 (407)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEccc
Confidence 468899999988 7 3569999999999999999999999999999999999877763 25777777765
Q ss_pred C----CHHHHHHhhc----c-CCceEEE-EEcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC------cc
Q 013210 173 S----DHEMVNSAIV----Q-GRTKVLY-FESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PA 233 (447)
Q Consensus 173 ~----d~~~l~~~i~----~-~~t~lV~-i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~------~~ 233 (447)
+ |+++|+++++ . +++++|+ +++|+||||.+.|++ +|+++|++||+++|+|++|+.+.+. ..
T Consensus 152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 231 (407)
T 2zc0_A 152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLK 231 (407)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGG
T ss_pred CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChh
Confidence 3 8999999983 2 2788874 689999999999876 9999999999999999999655431 11
Q ss_pred CC---CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC----CcHHHHHHHH
Q 013210 234 RL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEH 306 (447)
Q Consensus 234 ~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~----~~l~~~~~~~ 306 (447)
.+ +.++++.|+||+++ +|.|+ |++++++++++.+....... ...++.+.+.++...+... ..+....+++
T Consensus 232 ~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 308 (407)
T 2zc0_A 232 ALDNEGRVIVAGTLSKVLG-TGFRI-GWIIAEGEILKKVLMQKQPI-DFCAPAISQYIALEYLKRGYFEKYHLEGALLGY 308 (407)
T ss_dssp GGCSSCCEEEEEESTTTTC-TTSCC-EEEECCHHHHHHHHHHHTTT-TSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHH
T ss_pred hcCCCCCEEEEcccccccC-CCcce-EEEecCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 22 56789999999999 89887 99999999988887765422 1222334444444444332 2233455667
Q ss_pred HHHHHHHHHHHHhC-C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 307 CHRALIFARRMKKL-G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 307 ~~~~~~l~~~L~~~-~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
.++++++.+.|++. + ..+..|. .|.++++.++...+...+.+.|... +| +.+..|.
T Consensus 309 ~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~l~~~--~g-i~v~~g~ 366 (407)
T 2zc0_A 309 KEKRDIMLKALENHLPNAEFTKPI-------------------AGMFVMFFLPEGADGISFANELMER--EG-VVVVPGK 366 (407)
T ss_dssp HHHHHHHHHHHHHHCTTSCBCCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHH--TC-EECBCSG
T ss_pred HHHHHHHHHHHHHhCCCCEEecCC-------------------CcEEEEEEcCCCCCHHHHHHHHHHh--CC-eEEECch
Confidence 88889999999873 3 3433222 4568999986422345677777652 24 4555552
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~ 439 (447)
.+ .. .+..++.+|||++ . +++++.++.|.++++++
T Consensus 367 ~~--------~~-----------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 367 PF--------YT-----------DESGKNAIRLNFS-RPSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp GG--------CS-----------SSCCTTEEEEECS-SSCTTHHHHHHHHHHHHHHHH
T ss_pred hc--------cC-----------CCCCCCeEEEEeC-CCCHHHHHHHHHHHHHHHHHH
Confidence 21 10 0112578999999 5 34455555555555443
No 79
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=2.7e-28 Score=245.22 Aligned_cols=289 Identities=15% Similarity=0.191 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHh----C---C--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G---T--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g---~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ | . +.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 87 ~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~ 161 (425)
T 1vp4_A 87 DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFR-----QYLANFVVVP 161 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEE
T ss_pred CHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEEec
Confidence 467888888888 7 3 459999999999999999999999999999999999887763 2577777766
Q ss_pred CC----CHHHHHHhhcc-------CCceEEE-EEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013210 172 IS----DHEMVNSAIVQ-------GRTKVLY-FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----- 231 (447)
Q Consensus 172 ~~----d~~~l~~~i~~-------~~t~lV~-i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~----- 231 (447)
.+ |+++|++++++ .++++|+ +++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+.
T Consensus 162 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 241 (425)
T 1vp4_A 162 LEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD 241 (425)
T ss_dssp EETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC
T ss_pred cCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCc
Confidence 53 89999998833 2788985 7899999999987 568899999999999999999665432
Q ss_pred -cc---CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC---CcHHHHHH
Q 013210 232 -PA---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMK 304 (447)
Q Consensus 232 -~~---~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~~ 304 (447)
.. ..+.++++.|+||+++ +|.|+ ||+++++++++.+....... ....+.+.+.++..++... +.+....+
T Consensus 242 ~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 318 (425)
T 1vp4_A 242 PIFKIGGPERVVLLNTFSKVLA-PGLRI-GMVAGSKEFIRKIVQAKQSA-DLCSPAITHRLAARYLERYDLLEQLKPTIE 318 (425)
T ss_dssp CHHHHHCTTTEEEEEESTTTTC-GGGCE-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHSCHHHHTHHHHH
T ss_pred CHHHhCCCCCEEEEeccccccc-cccce-EEEeeCHHHHHHHHHHhhhh-cCCCCHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 1257899999999999 99998 99999999988887655422 1223334444444444332 22445566
Q ss_pred HHHHHHHHHHHHHHhC-----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013210 305 EHCHRALIFARRMKKL-----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 379 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~-----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~ 379 (447)
++.++++++.+.|++. +..+..|. .|.++++.++...+...+.+.|... | +.
T Consensus 319 ~~~~~~~~l~~~L~~~~~~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~l~~~l~~~---g-i~ 375 (425)
T 1vp4_A 319 LYRRKRTVMLNALEEYFSDIPGVKWVKSE-------------------GGLFIWLTLPEGFDTWEMFEYAKRK---K-VF 375 (425)
T ss_dssp HHHHHHHHHHHHHHHHSTTSTTCEECCCS-------------------BSSEEEEECCTTCCTTTTHHHHHHH---T-EE
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEecCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-CE
Confidence 6788899999999874 34443332 4668999987322234566666542 3 45
Q ss_pred ccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHhh
Q 013210 380 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 380 vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~~ 440 (447)
+..|..+ .. .+..++.+|||++ .. ++++.++.|.++++++.
T Consensus 376 v~~g~~f--------~~-----------~~~~~~~iRis~~-~~~~e~i~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 376 YVPGRVF--------KV-----------YDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYG 419 (425)
T ss_dssp CEEGGGG--------CT-----------TCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred EECchhh--------cC-----------CCCCCCeEEEEeC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5555221 10 0112578999999 63 34445555555555544
No 80
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.96 E-value=1.6e-28 Score=242.48 Aligned_cols=284 Identities=15% Similarity=0.118 Sum_probs=198.2
Q ss_pred HHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.++++.+|++++ .+.+++|+||++|+++++++++++||+|+++.|.|+++...+. ..|.++..++.+
T Consensus 61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~ 135 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLS-----ATQREGIFIDAT 135 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHH-----HHTCCEEEEECT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEEccCC
Confidence 456777777765 4569999999999999999999999999999999999887763 257788888876
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----cC------CCC
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----AR------LGA 237 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----~~------~g~ 237 (447)
|+++|++++ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+.. .. .+.
T Consensus 136 ~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 214 (377)
T 3fdb_A 136 GGINLHDVEKGF-QAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASV 214 (377)
T ss_dssp TSCCHHHHHHHH-HTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHH
T ss_pred CCCCHHHHHHHh-ccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCc
Confidence 999999999 667999999999999999986 6677888999999999999996544322 11 245
Q ss_pred eEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~ 315 (447)
++++.|+||.+|++|.|+ ||++. ++++++.+...... .....+.+.+.++..++... +++..+.+++.++++++.+
T Consensus 215 ~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 292 (377)
T 3fdb_A 215 CITITAPSKAWNIAGLKC-AQIIFSNPSDAEHWQQLSPV-IKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLH 292 (377)
T ss_dssp EEEEECSTTTTTCGGGCC-EEEECCSHHHHHHHHHSCHH-HHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeChHhccCcchhh-eEEEeCCHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999998 87665 78888888765441 11223333333334444332 3356677788999999999
Q ss_pred HHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccc
Q 013210 316 RMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 393 (447)
Q Consensus 316 ~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a 393 (447)
.|++ . +..+..|. .+.++++.++.......+...+... .| +.++.|..+..
T Consensus 293 ~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v~~g~~~~~----- 345 (377)
T 3fdb_A 293 EIPKRIPGAKITPMQ-------------------ATYLMWIDFRDTTIEGSPSEFFIEK--AK-VAMNDGAWFGE----- 345 (377)
T ss_dssp HHHHHSTTCEECCCS-------------------BCSEEEEECTTSCCCSCHHHHHHHH--HC-EECEEGGGGCG-----
T ss_pred HHHhhCCCceEecCC-------------------eeEEEEEECcccCCCHHHHHHHHHh--CC-EEecCChhccC-----
Confidence 9988 4 44554332 3446688887421012334443321 23 45555532110
Q ss_pred cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 394 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..++.+|||++ . +++.++...++|.++
T Consensus 346 ----------------~~~~~~Ris~~-~--~~e~i~~~l~~l~~~ 372 (377)
T 3fdb_A 346 ----------------DGTGFCRLNFA-T--SREVLEEAIDRMAKA 372 (377)
T ss_dssp ----------------GGTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEEeC-C--CHHHHHHHHHHHHHH
Confidence 02578999999 5 344455554544443
No 81
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.96 E-value=8.2e-28 Score=239.40 Aligned_cols=289 Identities=18% Similarity=0.209 Sum_probs=204.6
Q ss_pred hHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 100 TVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
...++++.+|+++|. +.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.+
T Consensus 75 ~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~ 149 (397)
T 2zyj_A 75 GYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFR-----LQGPRFLTVPAGEEGP 149 (397)
T ss_dssp CCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEETTEE
T ss_pred CCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEecCcCCCCC
Confidence 347899999999985 469999999999999999999999999999999999887763 257777776653
Q ss_pred CHHHHHHhhccCCceEEE-EEcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC------ccCC------CC
Q 013210 174 DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PARL------GA 237 (447)
Q Consensus 174 d~~~l~~~i~~~~t~lV~-i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~------~~~~------g~ 237 (447)
|+++|++++++.++++|+ +++|+||||.+.|.+ +|+++|++||+++|+|++|+.+.+. ...+ +.
T Consensus 150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (397)
T 2zyj_A 150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPG 229 (397)
T ss_dssp CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCC
T ss_pred CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCe
Confidence 899999999434788885 689999999998754 8999999999999999999655431 1222 34
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC--CcHHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~ 315 (447)
++++.|+||+++ +|.|+ ||+++++++++.+....... ...++.+.+.++...+... +++....+++.++++++.+
T Consensus 230 ~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 306 (397)
T 2zyj_A 230 VIYLGSFSKVLS-PGLRV-AFAVAHPEALQKLVQAKQGA-DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLH 306 (397)
T ss_dssp EEEEEESTTTTC-GGGCC-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccc-cccee-EEEecCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999 89998 99999999988887655422 1223334444444444433 2345556677888999999
Q ss_pred HHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccc
Q 013210 316 RMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 392 (447)
Q Consensus 316 ~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~ 392 (447)
.|++. +..+..|. .|.++++.++...+...+.+.|... | +.+..|..+
T Consensus 307 ~L~~~~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~f------ 357 (397)
T 2zyj_A 307 ALDREVPKEVRYTRPK-------------------GGMFVWMELPKGLSAEGLFRRALEE---N-VAFVPGGPF------ 357 (397)
T ss_dssp HHHHHSCTTSEECCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHT---T-EEEEESGGG------
T ss_pred HHHHHCCCCeEEccCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-CEEechHHh------
Confidence 99874 34544332 4568999987422345677777652 3 455545221
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013210 393 GSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM 439 (447)
Q Consensus 393 a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~ 439 (447)
.. .+..++.+|||++ .. ++++.++.|.++++++
T Consensus 358 --~~-----------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 358 --FA-----------NGGGENTLRLSYA-TLDREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp --CT-----------TSCCTTEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred --cC-----------CCCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 00 0113578999999 64 2334444444444443
No 82
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.96 E-value=9.1e-28 Score=241.55 Aligned_cols=286 Identities=16% Similarity=0.163 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 101 VLNLSRQMAALEG----------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 101 ~~~l~~~ia~l~g----------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
..++++.+|++++ .+.+++|+|+++++.+++++++++||+|+++.|+|+++...+ . ...|.++..+
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~---~-~~~g~~~~~v 160 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDL---R-WRTGVQLIPI 160 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHT---T-TTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHH---H-HhcCCEEEEe
Confidence 5789999999876 356999999999999999999999999999999999886543 1 2268888888
Q ss_pred CCC-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013210 171 DIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---- 231 (447)
Q Consensus 171 ~~~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---- 231 (447)
+.+ |+++|+++++. +++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+.
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 240 (428)
T 1iay_A 161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQF 240 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCC
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCc
Confidence 753 78999988832 37899999999999999999 899999999999999999999654332
Q ss_pred --ccCC--C-------Ce--EEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC
Q 013210 232 --PARL--G-------AD--VVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 297 (447)
Q Consensus 232 --~~~~--g-------~d--i~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~ 297 (447)
...+ . .| +++.|+||.+|++|.|+ |+++. ++++++.+..... ...++.+.+.++..++....
T Consensus 241 ~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~l~~~~ 316 (428)
T 1iay_A 241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRV-GIIYSFNDDVVNCARKMSS---FGLVSTQTQYFLAAMLSDEK 316 (428)
T ss_dssp CCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCE-EEEEESCHHHHHHHHHHHT---TSCCCHHHHHHHHHHTTCHH
T ss_pred cCHHHhccccccccCCCCcEEEEecchhhcCCCCceE-EEEEeCCHHHHHHHHHHHh---cccCCHHHHHHHHHHhcChH
Confidence 1111 1 45 89999999999999998 88877 6788887775543 12233333333333333322
Q ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HHHHHHHH
Q 013210 298 ----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKANRLMN 367 (447)
Q Consensus 298 ----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~~~~l~~ 367 (447)
.+....+++.++++++.+.|++++.++..+ ..|.++++.++.. .....+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~l~~ 377 (428)
T 1iay_A 317 FVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKN-------------------NAGLFCWMDLRPLLRESTFDSEMSLWR 377 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC-------------------SSSSEEEEECGGGCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-------------------CeeEEEEEechhhcCCCchhHHHHHHH
Confidence 234456667888999999998876544322 1355888998642 23456777
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|... +| +.+..|..+ . ...++++|||++ . .+++.++.+.++|+++
T Consensus 378 ~l~~~--~g-i~v~~~~~~--------~-------------~~~~~~iRis~~-~-~~~e~i~~~~~~l~~~ 423 (428)
T 1iay_A 378 VIIND--VK-LNVSPGSSF--------E-------------CQEPGWFRVCFA-N-MDDGTVDIALARIRRF 423 (428)
T ss_dssp HHHHT--SC-EECEEGGGG--------T-------------CSSSSEEEEECS-S-SCHHHHHHHHHHHHHH
T ss_pred HHHHh--CC-EEEeCchhh--------C-------------CCCCCEEEEEEe-c-CCHHHHHHHHHHHHHH
Confidence 77642 24 455544221 0 011478999999 5 3455566666666554
No 83
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.96 E-value=1.7e-28 Score=245.11 Aligned_cols=284 Identities=15% Similarity=0.117 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHh----CC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----GT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ |. +.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 87 ~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~ 161 (404)
T 2o1b_A 87 KEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVL-----LADGKPVPLN 161 (404)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHH-----HTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEec
Confidence 467888888887 75 469999999999999999999999999999999999987763 2577777766
Q ss_pred CC------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccCC--
Q 013210 172 IS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPARL-- 235 (447)
Q Consensus 172 ~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~~~-- 235 (447)
.+ |+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+ +...+
T Consensus 162 ~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 240 (404)
T 2o1b_A 162 LEPPHYLPDWSKVDSQI-IDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN 240 (404)
T ss_dssp CCTTTCCCCGGGSCHHH-HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT
T ss_pred cCcccCcCCHHHHHHhh-ccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC
Confidence 42 678888888 567899999999999999986 77899999999999999999965533 22232
Q ss_pred --CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHHHH
Q 013210 236 --GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALI 312 (447)
Q Consensus 236 --g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~ 312 (447)
+.++++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++.. .+++....+++.+++++
T Consensus 241 ~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (404)
T 2o1b_A 241 GKDVAIEIYSLSKGYNMSGFRV-GFAVGNKDMIQALKKYQTHT-NAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDR 318 (404)
T ss_dssp HHHHEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecchhccCchhhe-EeEecCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 46899999999999899998 99999999998887655421 122333333333334433 23355566678889999
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 392 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~ 392 (447)
+.+.|++++..+..|. .|.++++.++...+...+.+.|.. +.| +.+..|..+
T Consensus 319 l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~l~~~l~~--~~g-i~v~~g~~f------ 370 (404)
T 2o1b_A 319 FEAMLAKADLPFVHAK-------------------GGIYVWLETPPGYDSEQFEQFLVQ--EKS-ILVAPGKPF------ 370 (404)
T ss_dssp HHHHHHHTTCCEECCC-------------------BSSEEEEECCTTCCHHHHHHHHHH--HHC-EECEESGGG------
T ss_pred HHHHHHhcCCeecCCC-------------------cceEEEEeCCCCCCHHHHHHHHHH--HCC-EEEeCchhh------
Confidence 9999998866554322 344788998732224556666542 123 455555221
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 393 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 393 a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.. ..++.+|||++ . +++.++.+.+.|.+
T Consensus 371 --~~-------------~~~~~iRis~~-~--~~e~l~~~l~~l~~ 398 (404)
T 2o1b_A 371 --GE-------------NGNRYVRISLA-L--DDQKLDEAAIRLTE 398 (404)
T ss_dssp --CG-------------GGTTEEEEECC-S--CTTHHHHHHHHHHG
T ss_pred --Cc-------------CCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 00 02478999999 6 23444444444443
No 84
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.96 E-value=5.1e-28 Score=238.60 Aligned_cols=272 Identities=15% Similarity=0.218 Sum_probs=202.0
Q ss_pred HHHHHHHHHH------hCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAAL------EGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l------~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.++++.+|++ .+. +.+++|+|+++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.+
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v~~~ 146 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAK-----GTHTEFIAVSRG 146 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEECC
T ss_pred HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEecCC
Confidence 5899999998 443 569999999999999999999999999999999999887663 257777777643
Q ss_pred -----CHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--Ccc----CCC-CeEE
Q 013210 174 -----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPA----RLG-ADVV 240 (447)
Q Consensus 174 -----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~--~~~----~~g-~di~ 240 (447)
|+++|++++ ++ ++++|++++|+||||.+.|++++.++|+.+++++|+|++|+.+.. +.. ..+ .+++
T Consensus 147 ~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~ 225 (369)
T 3cq5_A 147 ADFRIDMDVALEEI-RAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVV 225 (369)
T ss_dssp TTSSCCHHHHHHHH-HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEE
T ss_pred cCCCCCHHHHHHHh-hccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEE
Confidence 789999998 55 789999999999999999999999999999999999999955442 222 235 7899
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+.|+||++|++|.|+ ||++.++++++.+...... ...+.+.+.++..++...+++....+++.++++++.+.|++.
T Consensus 226 ~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 301 (369)
T 3cq5_A 226 SRTMSKAFDFAGGRL-GYFVANPAFIDAVMLVRLP---YHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL 301 (369)
T ss_dssp EEESSSTTSCGGGCC-EEEEECTHHHHHHHTTSCT---TCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred EEechHhcCCcccce-EEEEeCHHHHHHHHHcCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999889998 9999999888887754431 223333333333444433345566777889999999999876
Q ss_pred CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCC
Q 013210 321 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 400 (447)
Q Consensus 321 ~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~ 400 (447)
+..+. |. .|+++++.++ .+...+.+.|.. .| +.+..|
T Consensus 302 g~~~~-~~-------------------~~~~~~~~~~--~~~~~l~~~l~~---~g-i~v~~~----------------- 338 (369)
T 3cq5_A 302 GYAVV-PS-------------------ESNFVFFGDF--SDQHAAWQAFLD---RG-VLIRDV----------------- 338 (369)
T ss_dssp TCEEE-CC-------------------SSSEEEEECC--SSHHHHHHHHHH---TT-EECBCC-----------------
T ss_pred CCEEC-CC-------------------CCeEEEEECC--CCHHHHHHHHHH---CC-EEEEEC-----------------
Confidence 66554 32 3558888886 124566666654 23 343333
Q ss_pred CHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 401 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 401 ~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+ .++.+|||++ . ++.++.+.++|+++
T Consensus 339 --------~-~~~~iRis~~-~---~~~i~~~~~~l~~~ 364 (369)
T 3cq5_A 339 --------G-IAGHLRTTIG-V---PEENDAFLDAAAEI 364 (369)
T ss_dssp --------S-CTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred --------C-CCCeEEEEeC-C---HHHHHHHHHHHHHH
Confidence 0 1468999999 3 45566666666654
No 85
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.96 E-value=6.5e-27 Score=233.14 Aligned_cols=310 Identities=14% Similarity=0.096 Sum_probs=217.8
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGT 151 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~ 151 (447)
+.+.+.+.....++. .+.......+...++++.+|+++|.+..+++++|++++..++..+. .+||+|+++.++|+++
T Consensus 67 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~ 145 (401)
T 2bwn_A 67 AAMHEALEAVGAGSG-GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASM 145 (401)
T ss_dssp HHHHHHHHHHCSCCC-SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHH
T ss_pred HHHHHHHHHcCCCCC-CcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHH
Confidence 555555543222222 2222223456778999999999998776666777778888877653 5899999999999999
Q ss_pred HHHHHhhcCcccCeeEEEeCCCCHHHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013210 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 228 (447)
Q Consensus 152 ~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 228 (447)
...+. ..|.++..++.+|+++|++.++. +++++|++++|+||||.+.|+++|.++|++||+++|+|++|+..
T Consensus 146 ~~~~~-----~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g 220 (401)
T 2bwn_A 146 IEGIK-----RNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVG 220 (401)
T ss_dssp HHHHH-----HSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred HHHHH-----HcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccccc
Confidence 87763 26888999998899999988832 57999999999999999999999999999999999999999522
Q ss_pred CCCc--------cCC--CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCc-cHHHHHHHHccCC
Q 013210 229 VLSP--------ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM-NPKVAFELSERIP 297 (447)
Q Consensus 229 ~~~~--------~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~a~~~~~~~~ 297 (447)
.+.+ ..+ +.|+++.|+||.+|++| ||+++++++++.+...........+... .+.++..++..+.
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 296 (401)
T 2bwn_A 221 MYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK 296 (401)
T ss_dssp TSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT
T ss_pred ccCCCCceeeeccCccccCcEEEeechhhccCCC----CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH
Confidence 2211 111 35899999999999765 8999999888877654332211222222 2222233333333
Q ss_pred cH--HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccc
Q 013210 298 HL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQ 374 (447)
Q Consensus 298 ~l--~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~-~~~~ 374 (447)
.. ....+++.++++++.+.|++.+.++..| .|++++|.++.......+.+.|. .
T Consensus 297 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~L~~~--- 353 (401)
T 2bwn_A 297 TAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--------------------GSHIVPVVIGDPVHTKAVSDMLLSD--- 353 (401)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--------------------SSSCEEEECCCHHHHHHHHHHHHHH---
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--------------------CCCeEEEEeCChHHHHHHHHHHHhc---
Confidence 33 5667788999999999998875544322 23489999976545667777774 4
Q ss_pred cccccccccCccccccccccccCCCCCHHHHHhcCCC--CCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 375 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS--AGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 375 ~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~--~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.| +.+..+.. .+.+ .+.+|||++ ..++++.++.+.++|+++.
T Consensus 354 ~g-i~v~~~~~----------------------~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 354 YG-VYVQPINF----------------------PTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp HC-EECCEECT----------------------TTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHHC
T ss_pred CC-EEEeecCC----------------------CCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHH
Confidence 23 34433311 1121 358999999 8888888988888887764
No 86
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.3e-28 Score=244.25 Aligned_cols=289 Identities=20% Similarity=0.220 Sum_probs=205.2
Q ss_pred HHHHHHHHHHh----CC----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-
Q 013210 102 LNLSRQMAALE----GT----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g~----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~- 172 (447)
.++++.+|+++ |. +.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 98 ~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~ 172 (447)
T 3b46_A 98 PSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIE-----LCGGKVVYVPIN 172 (447)
T ss_dssp HHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeCC
Confidence 57888888876 32 469999999999999999999999999999999999987763 25666655542
Q ss_pred ----------------CCHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 173 ----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 173 ----------------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
.|+++|++++ ++++++|++++|+||||.+. ++++|+++|++||+++|+|++|+.+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~ 251 (447)
T 3b46_A 173 PPKELDQRNTRGEEWTIDFEQFEKAI-TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS 251 (447)
T ss_dssp CCGGGGTSCBCSTTSEECHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC
T ss_pred CccccccccccccCcccCHHHHHHhh-ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC
Confidence 2789999999 67899999999999999997 4889999999999999999999655432
Q ss_pred ---ccC-----CCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc---CCcH
Q 013210 232 ---PAR-----LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER---IPHL 299 (447)
Q Consensus 232 ---~~~-----~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~---~~~l 299 (447)
... .++++++.|+||+++++|+|+ ||+++ ++++++.+....... ...++.+.+.++..++.. ..++
T Consensus 252 ~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ri-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~a~~~aL~~~~~~~~~ 329 (447)
T 3b46_A 252 FTRIATLSPEIGQLTLTVGSAGKSFAATGWRI-GWVLSLNAELLSYAAKAHTRI-CFASPSPLQEACANSINDALKIGYF 329 (447)
T ss_dssp CCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCC-EEEECSCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHHTHH
T ss_pred CcCHHHcCCCCCCcEEEEecCchhcCCcchhh-EEEEeCCHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhCCcchHHH
Confidence 112 368999999999999999998 99999 999998887654421 123333444344334433 2335
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---------------HHHHH
Q 013210 300 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---------------EKANR 364 (447)
Q Consensus 300 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---------------~~~~~ 364 (447)
....+++.++++++.+.|++++..+..|. .|.++++.++.. .....
T Consensus 330 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 390 (447)
T 3b46_A 330 EKMRQEYINKFKIFTSIFDELGLPYTAPE-------------------GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFR 390 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEECCS-------------------BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeecCCC-------------------eeEEEEEecccccCccccccccccccCCCHHH
Confidence 56677789999999999988776655432 466888888631 23456
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.+.|.. +.| +.+..|..+.. ... .+..++.+|||++ . .++.++...+.|.++
T Consensus 391 ~~~~l~~--~~g-V~v~pg~~f~~---~~~-------------~~~~~~~iRls~~-~--~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 391 ISHWLIN--ELG-VVAIPPTEFYI---KEH-------------EKAAENLLRFAVC-K--DDAYLENAVERLKLL 443 (447)
T ss_dssp HHHHHHH--HTC-EECBCGGGGSC---GGG-------------GGGGTTEEEEECC-S--CHHHHHHHHHHGGGG
T ss_pred HHHHHHH--hCC-EEEECchHhCC---CCc-------------cCCCCCEEEEEEe-C--CHHHHHHHHHHHHHH
Confidence 7766642 123 44444422110 000 0012578999999 5 355455555555443
No 87
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.96 E-value=1.4e-27 Score=238.41 Aligned_cols=212 Identities=17% Similarity=0.182 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHh------CC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE------GT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~------g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|+++ +. +.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 80 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~ 154 (406)
T 1xi9_A 80 LPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVK-----FYGGKPVEYRT 154 (406)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeec
Confidence 357888888876 22 569999999999999999999999999999999999887763 25777776654
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC--C
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR--L 235 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~--~ 235 (447)
+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+. ... .
T Consensus 155 ~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 233 (406)
T 1xi9_A 155 IEEEDWQPDIDDIRKKI-TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK 233 (406)
T ss_dssp EGGGTSEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS
T ss_pred CCCcCCcCCHHHHHHhh-CcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCC
Confidence 2 899999999 678999999999999999986 899999999999999999999655431 112 2
Q ss_pred CC-eEEEeCCCccccCCCCeeEEEEE--cCh----HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHH
Q 013210 236 GA-DVVVHSISKFISGGADIIAGAVC--GPA----NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHC 307 (447)
Q Consensus 236 g~-di~~~S~sK~~g~~g~~igG~l~--~~~----~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~ 307 (447)
+. |+++.|+||++|++|.|+ |+++ .++ ++++.+....... ...+.+.+.++..++... +.+....+++.
T Consensus 234 ~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 310 (406)
T 1xi9_A 234 DVPVIVMNGLSKVYFATGWRL-GYMYFVDPENKLSEVREAIDRLARIR--LCPNTPAQFAAIAGLTGPMDYLKEYMKKLK 310 (406)
T ss_dssp SSCEEEEEESTTTTCCGGGCC-EEEEEECTTCTTHHHHHHHHHHHHHT--CCSCSHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CceEEEEeccccccCCCccEE-EEEEEecCchhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 56 899999999999899998 8888 888 8988887665422 233334444444445322 33555667788
Q ss_pred HHHHHHHHHHHhCC
Q 013210 308 HRALIFARRMKKLG 321 (447)
Q Consensus 308 ~~~~~l~~~L~~~~ 321 (447)
++++++.+.|++.+
T Consensus 311 ~~~~~l~~~L~~~~ 324 (406)
T 1xi9_A 311 ERRDYIYKRLNEIP 324 (406)
T ss_dssp HHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998873
No 88
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=3e-28 Score=246.15 Aligned_cols=260 Identities=15% Similarity=0.123 Sum_probs=184.1
Q ss_pred CchHHHHHHHHHHHh--------CCCeEEEeCChHHHHHHHHHHhcCCCC--------------eEEEe-CCCchhHHHH
Q 013210 98 NPTVLNLSRQMAALE--------GTEAAYCTASGMSAISSVLMQLCSSGG--------------HVVAA-RTLYGGTHAL 154 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~--------g~~~~~~tsggt~A~~~al~~l~~~gd--------------~Vi~~-~~~y~~~~~~ 154 (447)
.....++|+.+|+++ +.+.+++|+||++|+++++++++++|| +|+++ .|+|+++...
T Consensus 82 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 82 PQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhc
Confidence 334578999999987 346799999999999999999988887 78876 8999988653
Q ss_pred HHh--hcCcccCeeEEEeCC----------CCHHHHHHh---hccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcC
Q 013210 155 LTH--FFPRACNITTTFVDI----------SDHEMVNSA---IVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKG 216 (447)
Q Consensus 155 ~~~--~~~~~~g~~~~~v~~----------~d~~~l~~~---i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~g 216 (447)
+.. .+.. .|..+..++. .|+++|+++ + ++++++|++++|+||||.++| +++|+++|++||
T Consensus 162 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~ 239 (444)
T 3if2_A 162 HVEGQHFAA-VLPHIDEVTHDGEEGFFKYRVDFEALENLPALK-EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYD 239 (444)
T ss_dssp CSSSCCEEE-CCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH-TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred ccccchhhc-cCceEEecccccccCccccCCCHHHHHHHHHhc-CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCC
Confidence 210 1122 4666666552 389999988 5 678999999999999999998 888999999999
Q ss_pred CEEEEeCCCCCC----CCC---ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH
Q 013210 217 VTVVVDNTFSPL----VLS---PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 289 (447)
Q Consensus 217 i~livD~~~~~~----~~~---~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a 289 (447)
+++|+|++|+.+ .+. +...+.++++.|+||+ +++|.|+ ||++.++++++.+....... ...++...+.++
T Consensus 240 ~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~a~ 316 (444)
T 3if2_A 240 IPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRT-GIIVADAKVIEAVSAMNAVV-NLAPTRFGAAIA 316 (444)
T ss_dssp CCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCC-EEEECCHHHHHHHHHHHHHH-HSSCCCHHHHHH
T ss_pred CEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCce-EEEEECHHHHHHHHHHHHhc-cCCCChHHHHHH
Confidence 999999999532 111 1224789999999997 7799998 99999999998887765522 133444444444
Q ss_pred HHHHccCCcH---HH-HHHHHHHHHHHHHHHHHhC-C---CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HH
Q 013210 290 FELSERIPHL---GL-RMKEHCHRALIFARRMKKL-G---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EE 360 (447)
Q Consensus 290 ~~~~~~~~~l---~~-~~~~~~~~~~~l~~~L~~~-~---~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~ 360 (447)
...+...... .. ..+.+.++++.+.+.|++. + ..+..|. .|.++++.++. ..
T Consensus 317 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------------------~g~~~~~~~~~~~~ 377 (444)
T 3if2_A 317 TPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE-------------------GAIFLWLWFKDLPI 377 (444)
T ss_dssp HHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC-------------------BSSEEEEEETTCSS
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC-------------------ccEEEEEEcCCCCC
Confidence 4444433221 12 3345677778888888663 2 2333332 46688999874 22
Q ss_pred HHHHHHHHhhcccccccccccccCc
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
....+...|... | +.++.|..
T Consensus 378 ~~~~l~~~l~~~---g-i~v~~g~~ 398 (444)
T 3if2_A 378 STLDLYERLKAK---G-TLIVPSEY 398 (444)
T ss_dssp CHHHHHHHHHHT---T-EECEEGGG
T ss_pred CHHHHHHHHHHC---C-eEEecchh
Confidence 356677777653 4 57776643
No 89
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.96 E-value=7.6e-28 Score=235.46 Aligned_cols=276 Identities=15% Similarity=0.164 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-CCHHH
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-SDHEM 177 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-~d~~~ 177 (447)
..++++.+|+++|.+ .+++|+||++|+.++++++. ||+|+++.|+|+++...+. ..|.++.+++. ++.+.
T Consensus 52 ~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~ 124 (350)
T 3fkd_A 52 AGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACR-----MYEHEVCFYPSNEDIGE 124 (350)
T ss_dssp CHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHH-----HTTCEEEEEETTSCGGG
T ss_pred HHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHH-----HcCCeEEEEecCCcccc
Confidence 368999999999874 69999999999999999887 9999999999999887763 26889999887 54332
Q ss_pred HHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcC-CEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCcccc
Q 013210 178 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFIS 249 (447)
Q Consensus 178 l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~g-i~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g 249 (447)
+..+++++|++++|+||||.++|+++|.++++.++ .++|+|++|..+.... ...+.++++.|+||.+|
T Consensus 125 ----~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 200 (350)
T 3fkd_A 125 ----ADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYG 200 (350)
T ss_dssp ----SCCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHS
T ss_pred ----CccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhcc
Confidence 21267999999999999999999999999998875 7999999996554321 12367799999999999
Q ss_pred CCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCC
Q 013210 250 GGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPG 328 (447)
Q Consensus 250 ~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~ 328 (447)
++|.|+ ||++.++++++.+...+.. ...+.+.+.++..++.....+.++++++.++++++.+.|++++ ..+ .|.
T Consensus 201 ~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 275 (350)
T 3fkd_A 201 IPGLRI-GYIVANKDFMKRVAAFSTP---WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEV-HPS 275 (350)
T ss_dssp CGGGCC-EEEECCHHHHHHHHTTCCT---TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEE-CCC
T ss_pred Ccchhe-EeEEeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE-CCC
Confidence 999998 9999999999888765541 2223333344444444433233344555588899999998874 344 222
Q ss_pred CCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhc
Q 013210 329 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 408 (447)
Q Consensus 329 ~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~ 408 (447)
.|+++++.++.. ....+.+.|.. +.| +.++.|..+ .
T Consensus 276 -------------------~~~~~~~~~~~~-~~~~l~~~L~~--~~g-i~v~~g~~f--------~------------- 311 (350)
T 3fkd_A 276 -------------------GTTFFLLRLKKG-TAAELKKYMLE--EYN-MLIRDASNF--------R------------- 311 (350)
T ss_dssp -------------------SSSEEEEEESSS-CHHHHHHHHHH--TTC-EECEECTTS--------T-------------
T ss_pred -------------------CCcEEEEECCCC-CHHHHHHHHHH--HCC-EEEEeCccC--------C-------------
Confidence 456888898743 35677777765 123 566666332 1
Q ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 409 GISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 409 g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+..++.+|||++ . .+.++.|.++|+++.
T Consensus 312 ~~~~~~iRis~~-~---~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 312 GLDESYVRITTQ-R---PAQNQLFIKALETFL 339 (350)
T ss_dssp TCCTTEEEEECC-C---HHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcC-C---HHHHHHHHHHHHHHH
Confidence 123689999999 3 344566666666664
No 90
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=5e-28 Score=236.42 Aligned_cols=285 Identities=14% Similarity=0.074 Sum_probs=199.9
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
+...++++.+|+++|.+ .+++|+||++|+..++++++++||+|+++.++|+++. .. ..... .|.++.+++.+
T Consensus 34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~ 110 (352)
T 1iug_A 34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER-FY-EIALE-AGLVVERLDYPYGD 110 (352)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH-HH-HHHHH-TTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH-HH-HHHHH-cCCceEEEeCCCCC
Confidence 45689999999999986 6999999999999999999999999999999999875 22 22222 58888887764
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCC--CCCCCccCCCCeEEEeCCCcc
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPARLGADVVVHSISKF 247 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~ 247 (447)
|+++|++ +++++|++++++||||.+.|+++|.++|++| |+++|+|++|+ ....+...+++|+++.|+||+
T Consensus 111 ~~d~~~l~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~ 186 (352)
T 1iug_A 111 TPRPEDVAK----EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKG 186 (352)
T ss_dssp CCCTTTSCC----SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSST
T ss_pred CCCHHHHhc----cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCccc
Confidence 4555443 5789999999999999999999999999999 99999999993 233343445789999999995
Q ss_pred c-cCCCCeeEEEEEcChHHHHH---------HHHHhhh--hhhhcCCCc-cHHH-HHHHHccC-CcHHHHHHHHHHHHHH
Q 013210 248 I-SGGADIIAGAVCGPANLVNS---------MMDLHQG--ALMLLGPTM-NPKV-AFELSERI-PHLGLRMKEHCHRALI 312 (447)
Q Consensus 248 ~-g~~g~~igG~l~~~~~~~~~---------l~~~~~~--~~~~~g~~~-~~~~-a~~~~~~~-~~l~~~~~~~~~~~~~ 312 (447)
+ ++.| + |+++.++++++. +...... .....++.. .... +..++..+ +.+....+++.+++++
T Consensus 187 ~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 263 (352)
T 1iug_A 187 LMCPPG--L-GFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNAL 263 (352)
T ss_dssp TCCCSC--E-EEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred ccCCCc--e-eEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4444 5 888888887654 2211000 011222221 1222 22222221 2356677788999999
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 392 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~ 392 (447)
+.+.|++.+.++..|. ..+.+++|.++.......+.+.|... | +.++.|.. +
T Consensus 264 l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~~~------~ 315 (352)
T 1iug_A 264 LYGVGEEGGLRPVPKR------------------FSPAVAAFYLPEGVPYARVKEAFAQR---G-AVIAGGQG------P 315 (352)
T ss_dssp HHHHHHHTTCEESCSS------------------BCTTCEEEECCTTCCHHHHHHHHHTT---T-EECEECCG------G
T ss_pred HHHHHHHCCCcccccc------------------cCCeEEEEEcCCCCCHHHHHHHHHHC---C-EEEEeCCC------c
Confidence 9999988766654331 13558999987322356677777653 3 45555521 0
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 393 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 393 a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..++.+|||++ ..++++.++.+.++|+++
T Consensus 316 -----------------~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 316 -----------------LKGKVFRLSLM-GAYDRYEALGVAGMFREV 344 (352)
T ss_dssp -----------------GTTTEEEECCC-SSCCHHHHHHHHHHHHHH
T ss_pred -----------------cCCCEEEEEcc-ccCCHHHHHHHHHHHHHH
Confidence 02478999999 777777777777777665
No 91
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=1.3e-27 Score=239.32 Aligned_cols=241 Identities=15% Similarity=0.155 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHhC--------------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 101 VLNLSRQMAALEG--------------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
..++++.+|++++ .+.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.+
T Consensus 77 ~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~ 151 (416)
T 1bw0_A 77 SPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCK-----AYGIG 151 (416)
T ss_dssp CHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCE
T ss_pred CHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHH-----HcCcE
Confidence 4678999999887 4569999999999999999999999999999999999887663 25777
Q ss_pred EEEeCC-------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 167 TTFVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 167 ~~~v~~-------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
+..++. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+..
T Consensus 152 ~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 230 (416)
T 1bw0_A 152 MHFYNCRPENDWEADLDEIRRLK-DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPN 230 (416)
T ss_dssp EEEEEEEGGGTTEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTT
T ss_pred EEEeecCcccCCCCCHHHHHHHh-ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence 776653 2799999999 678999999999999999998 8999999999999999999996543221
Q ss_pred ------cCC---CCeEEEeCCCccccCCCCeeEEEEEcCh--HHHHHHH----HHhhhhhhhcCCCccHHHHHHHHccC-
Q 013210 233 ------ARL---GADVVVHSISKFISGGADIIAGAVCGPA--NLVNSMM----DLHQGALMLLGPTMNPKVAFELSERI- 296 (447)
Q Consensus 233 ------~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~--~~~~~l~----~~~~~~~~~~g~~~~~~~a~~~~~~~- 296 (447)
..+ +.++++.|+||.++++|.|+ ||+++++ ++++.+. .... .....+.+.+.++..++...
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~-G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~ 307 (416)
T 1bw0_A 231 ATFTSVADFETTVPRVILGGTAKNLVVPGWRL-GWLLYVDPHGNGPSFLEGLKRVGM--LVCGPCTVVQAALGEALLNTP 307 (416)
T ss_dssp CCCCCTTSSCCSCCEEEEEESTTTTSCGGGCC-EEEEEECTTCSCHHHHHHHHHHHH--HHTCSCHHHHHHHHHHHHSSC
T ss_pred CCccCHHHccCCCcEEEEecchhhCCCCCceE-EEEEeeCchhhHHHHHHHHHHHhc--cccCCCcHHHHHHHHHHhccc
Confidence 111 24688999999999999998 8887654 3444333 2211 11223333343444444432
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHh
Q 013210 297 -PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL 369 (447)
Q Consensus 297 -~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~l~~~l 369 (447)
..+....+++.++++++.+.|+++ +..+..|. .|.++++.++.. .....+...|
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (416)
T 1bw0_A 308 QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR-------------------GAMYLMSRIDLEKYRDIKTDVEFFEKL 368 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC-------------------BTTEEEEEECGGGBSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC-------------------eeEEEEEeCCHHHcCCCCCHHHHHHHH
Confidence 335566777889999999999876 33443222 355788888521 1245566665
No 92
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.96 E-value=3.4e-27 Score=237.25 Aligned_cols=272 Identities=18% Similarity=0.186 Sum_probs=188.1
Q ss_pred eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----CHHHHHHhhcc-------
Q 013210 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ------- 184 (447)
Q Consensus 116 ~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~i~~------- 184 (447)
.+++|+|+++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.+ |+++|++++++
T Consensus 110 ~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~ 184 (425)
T 2r2n_A 110 DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLH-----PLGCNIINVASDESGIVPDSLRDILSRWKPEDAK 184 (425)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHG-----GGTCEEEEECEETTEECHHHHHHHHTTSCSTTSS
T ss_pred cEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccc
Confidence 69999999999999999999999999999999999887762 368888777653 88999998831
Q ss_pred ----CCceEEEE-EcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC------ccC---CCCeEEEeCCCcc
Q 013210 185 ----GRTKVLYF-ESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PAR---LGADVVVHSISKF 247 (447)
Q Consensus 185 ----~~t~lV~i-~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~------~~~---~g~di~~~S~sK~ 247 (447)
+++++|++ .+|+||||.+.+.+ +|+++|++||+++|+|++|+.+.+. ... .+.++++.|+||+
T Consensus 185 ~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~ 264 (425)
T 2r2n_A 185 NPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI 264 (425)
T ss_dssp STTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTT
T ss_pred cccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhh
Confidence 46888877 68999999999755 9999999999999999999654332 122 2567999999999
Q ss_pred ccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC------CcHHHHHHHHHHHHHHHHHHHHhC-
Q 013210 248 ISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI------PHLGLRMKEHCHRALIFARRMKKL- 320 (447)
Q Consensus 248 ~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~------~~l~~~~~~~~~~~~~l~~~L~~~- 320 (447)
++ +|.|+ ||+++++++++.+....... ....+.+.+.++..++... +++....+++.++++.+.+.|+++
T Consensus 265 ~~-~GlRi-G~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 341 (425)
T 2r2n_A 265 IS-SGLRI-GFLTGPKPLIERVILHIQVS-TLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL 341 (425)
T ss_dssp TC-STTCC-EEEEEEHHHHHHHHHHHHTT-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cc-Cccce-EEEecCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 98 99999 99999999988887665421 1223333333333333321 234445566788899999999874
Q ss_pred -CC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH-HHHHhhcccccccccccccCccccccccccccC
Q 013210 321 -GL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR-LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 321 -~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~-l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
+. .+..|. .|.++++.++....... +.+.|... | +.+..|..+.. .
T Consensus 342 ~~~~~~~~p~-------------------~g~~~~~~~~~~~~~~~~~~~~l~~~---g-v~v~pg~~f~~------~-- 390 (425)
T 2r2n_A 342 TGLAEWHVPA-------------------AGMFLWIKVKGINDVKELIEEKAVKM---G-VLMLPGNAFYV------D-- 390 (425)
T ss_dssp SSSEEECCCS-------------------BSSEEEEEETTCSCCHHHHHTHHHHT---T-EECEEGGGGSS------S--
T ss_pred CCCeEEeCCC-------------------ceEEEEEEeCCCCCHHHHHHHHHHHC---C-cEEechhhhcC------C--
Confidence 33 233332 56689999974211223 34455442 3 45555532110 0
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+...+.+|||++ .. +++.++.+.+.|.+
T Consensus 391 ----------~~~~~~~iRis~~-~~-~~~~i~~~~~~l~~ 419 (425)
T 2r2n_A 391 ----------SSAPSPYLRASFS-SA-SPEQMDVAFQVLAQ 419 (425)
T ss_dssp ----------TTSCCCEEEEECS-SC-CHHHHHHHHHHHHH
T ss_pred ----------CCCCCCEEEEEeC-CC-CHHHHHHHHHHHHH
Confidence 0012478999998 53 44444444444443
No 93
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.96 E-value=9.2e-28 Score=234.42 Aligned_cols=283 Identities=19% Similarity=0.165 Sum_probs=194.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.++...++++.+|+++|.+.+++++||++|+.+++++++++||+|+++.|+|.+++... ... +..|.++.++ .+
T Consensus 36 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~-~~~g~~~~~v-~~~~~ 112 (347)
T 1jg8_A 36 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMA-VLSGVMPHPV-PGKNG 112 (347)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHH-HHTCCEEEEE-CEETT
T ss_pred CChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcccc-chh-hccCeEEEEe-cCCCC
Confidence 45677899999999999999999999999999999999999999999999997654310 000 1257777776 32
Q ss_pred --CHHHHHHhhcc-----CCceEEEEEcCCCCC-ccccC---HHHHHHHHHhcCCEEEEeCCCCC--C---CCCccC--C
Q 013210 174 --DHEMVNSAIVQ-----GRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFSP--L---VLSPAR--L 235 (447)
Q Consensus 174 --d~~~l~~~i~~-----~~t~lV~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~~--~---~~~~~~--~ 235 (447)
|+++|++++.. ++|++|++++|+||| |.+.| +++|.++|+++|+++|+|++|.. + ..++.. .
T Consensus 113 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~ 192 (347)
T 1jg8_A 113 AMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG 192 (347)
T ss_dssp EECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH
T ss_pred ccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcc
Confidence 89999999832 269999999999999 99987 46888999999999999998721 1 122222 2
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH---HHHHccCCcHHHHHHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA---FELSERIPHLGLRMKEHCHRALI 312 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a---~~~~~~~~~l~~~~~~~~~~~~~ 312 (447)
+.|.++.|+||+++++ +||+++.++++++.+...+... ..+.......+ ...+.... .++++..+++++
T Consensus 193 ~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~ 264 (347)
T 1jg8_A 193 YADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKML--GGGMRQAGVLAAAGIIALTKMV---DRLKEDHENARF 264 (347)
T ss_dssp TCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHH--TCCCSSTHHHHHHHHHHHHHSS---TTHHHHHHHHHH
T ss_pred cccEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 5788888999999864 5567788998888877655421 11111222222 22222211 123444567788
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
+.+.|++++..+..+. ..|+++++.++. ..+...+.+.|... | +.++.+
T Consensus 265 l~~~L~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~-------- 314 (347)
T 1jg8_A 265 LALKLKEIGYSVNPED------------------VKTNMVILRTDNLKVNAHGFIEALRNS---G-VLANAV-------- 314 (347)
T ss_dssp HHHHHHHHTCBCCGGG------------------CCSSEEEEECTTSSSCHHHHHHHHHHH---T-EECEEE--------
T ss_pred HHHHHHhcCceeccCC------------------CcceEEEEEcccccCCHHHHHHHHHHC---C-CEEecC--------
Confidence 8888877654432211 135688999873 22356777777642 3 343322
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.++.+|||++ ...+++.++.+.++|+++.
T Consensus 315 -------------------~~~~iRl~~~-~~~~~e~i~~~~~~l~~~l 343 (347)
T 1jg8_A 315 -------------------SDTEIRLVTH-KDVSRNDIEEALNIFEKLF 343 (347)
T ss_dssp -------------------ETTEEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred -------------------CCCeEEEEeC-CCCCHHHHHHHHHHHHHHH
Confidence 0357999998 7777777877777776653
No 94
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.96 E-value=3.8e-27 Score=233.96 Aligned_cols=270 Identities=17% Similarity=0.123 Sum_probs=188.8
Q ss_pred HH-HHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LN-LSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~-l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+ +++.+|+++ | .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 66 ~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~ 140 (390)
T 1d2f_A 66 NDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-----GNQRTVMPVAL 140 (390)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHH-----HCCCEEEEeec
Confidence 45 777777765 4 3569999999999999999999999999999999999887763 25777776654
Q ss_pred --------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccCC
Q 013210 173 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARL 235 (447)
Q Consensus 173 --------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~~ 235 (447)
.|+++|++++++.++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+. ...+
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 220 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV 220 (390)
T ss_dssp EECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT
T ss_pred ccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHc
Confidence 38999999994348999999999999999987 889999999999999999999655332 1223
Q ss_pred C--C-eEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhh-hhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHH
Q 013210 236 G--A-DVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQ-GALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHR 309 (447)
Q Consensus 236 g--~-di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~-~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~ 309 (447)
. . |. +.|+||++|++|.|+ |+++.+ +++++.+..... .......+.+.+.++..++... +.+....+++.++
T Consensus 221 ~~~~~d~-~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 298 (390)
T 1d2f_A 221 ARGDWAL-LTSGSKSFNIPALTG-AYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDN 298 (390)
T ss_dssp CCSSEEE-EECSHHHHTCGGGCC-EEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chhhHhh-ccCccHhhcccChhh-eEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 2 67 999999999899998 888874 788887766543 1111122223333333333322 2355566678889
Q ss_pred HHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-cccccccccccccCc
Q 013210 310 ALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQFGFMAVSLGYY 385 (447)
Q Consensus 310 ~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~-~~~~~g~~~vs~G~~ 385 (447)
++++.+.|++ ++ ..+..|. .|.++++.++.. .+...+.+.|. .. | +.+..|..
T Consensus 299 ~~~l~~~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~~~---g-i~v~~g~~ 355 (390)
T 1d2f_A 299 LTYIADKMNAAFPELNWQIPQ-------------------STYLAWLDLRPLNIDDNALQKALIEQE---K-VAIMPGYT 355 (390)
T ss_dssp HHHHHHHHHHHCSSCCCCCCS-------------------BCSEEEEECGGGCCCHHHHHHHHHHTT---C-EECEEGGG
T ss_pred HHHHHHHHHhhCCCCEEecCC-------------------ccEEEEEEccccCCCHHHHHHHHHHHc---C-EEeeCccc
Confidence 9999999987 53 3332211 234667888632 12456777776 32 3 45555522
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 423 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~ 423 (447)
+. + ..++.+|||++ ..
T Consensus 356 f~----~-----------------~~~~~~Ris~~-~~ 371 (390)
T 1d2f_A 356 YG----E-----------------EGRGFVRLNAG-CP 371 (390)
T ss_dssp GC----G-----------------GGTTEEEEECC-SC
T ss_pred cC----C-----------------CCCCeEEEEec-CC
Confidence 10 0 12478999999 63
No 95
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=7.5e-28 Score=240.77 Aligned_cols=290 Identities=19% Similarity=0.227 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHhCC--------CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEGT--------EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g~--------~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|++++. +.+++|+||++|+.+++++++++||+|+++.++|+++...+. ..|.++..++.
T Consensus 81 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~ 155 (409)
T 2gb3_A 81 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAK-----IAGVKLIPVTR 155 (409)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HHTCEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEecc
Confidence 46788888888742 569999999999999999999999999999999999887663 25778887776
Q ss_pred CC------HHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc-C-CC
Q 013210 173 SD------HEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA-R-LG 236 (447)
Q Consensus 173 ~d------~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~-~-~g 236 (447)
++ +++|++++ ++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+.+ ... . .+
T Consensus 156 ~~~~~~~~~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 234 (409)
T 2gb3_A 156 RMEEGFAIPQNLESFI-NERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESD 234 (409)
T ss_dssp CGGGTSCCCTTGGGGC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCT
T ss_pred CCCCCCccHHHHHHhh-CcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCC
Confidence 52 67888888 668999999999999999975 88999999999999999999955433 111 2 26
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~ 314 (447)
+|+++.|+||++|++|.|+ |+++.++ ++++.+....... ...+.+.+.++..++... ..+....+++.++++++.
T Consensus 235 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 311 (409)
T 2gb3_A 235 KVVVIDSVSKKFSACGARV-GCLITRNEELISHAMKLAQGR--LAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVL 311 (409)
T ss_dssp TEEEEEESTTTTTCGGGCC-EEEECSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecchhccCCccceE-EEEEECcHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999899998 9999888 8888887665522 122333333344444332 234555677888999999
Q ss_pred HHHHhCCCee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc---cccccccccccCcccccc
Q 013210 315 RRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY---AQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 315 ~~L~~~~~~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~---~~~g~~~vs~G~~~s~~~ 390 (447)
+.|++.+..+ ..|. .|.++++.+++. +...+.+.|... ...| +.+..|..+
T Consensus 312 ~~L~~~g~~~~~~~~-------------------~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~g-i~v~~g~~f---- 366 (409)
T 2gb3_A 312 KKLEEHGLKRFTKPS-------------------GAFYITAELPVE-DAEEFARWMLTDFNMDGET-TMVAPLRGF---- 366 (409)
T ss_dssp HHHHHTTCCCBCCCS-------------------BSSEEEEECSSS-CHHHHHHHHHHSCCBTTEE-EECEEGGGG----
T ss_pred HHHHHcCceeeeCCC-------------------eeEEEEEEeCCC-CHHHHHHHHHhccccccCc-EEEeCchHh----
Confidence 9998876544 3221 345777788622 245666666542 0013 455544211
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~ 439 (447)
... .+..++.+|||++ . +++++.++.|.++++++
T Consensus 367 ----~~~----------~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 367 ----YLT----------PGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp ----CSS----------TTTTSSEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred ----CCC----------CCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHh
Confidence 000 0123578999999 4 23444555555555554
No 96
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=8.8e-28 Score=239.84 Aligned_cols=291 Identities=13% Similarity=0.144 Sum_probs=205.9
Q ss_pred chHHHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh--HHHHHHhhcCcccCeeEEEeCCC
Q 013210 99 PTVLNLSRQMAALEGTEA---AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~---~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
...+++++.+++++|.+. +++|+||++|+.+++++++++||+|+++.++|++ +...+. . .|.++..++.+
T Consensus 46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~ 120 (411)
T 3nnk_A 46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIAR----R-CRAEVHTIEVP 120 (411)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH----H-TTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHH----H-cCCeEEEEecC
Confidence 456889999999998753 7889999999999999999999999999999987 444442 2 68888888765
Q ss_pred -----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCc
Q 013210 174 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISK 246 (447)
Q Consensus 174 -----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK 246 (447)
|+++|++++++.++++|++++|+||||.+.|+++|.++|++||+++|+|++++ ....+....++|+++.|+||
T Consensus 121 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K 200 (411)
T 3nnk_A 121 WGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQK 200 (411)
T ss_dssp TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTT
T ss_pred CCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCcc
Confidence 89999999933489999999999999999999999999999999999999983 33455556689999999999
Q ss_pred cc-cCCCCeeEEEEEcChHHHHHHHHHhh---------------------------------hhhhhcCC-CccHHHHH-
Q 013210 247 FI-SGGADIIAGAVCGPANLVNSMMDLHQ---------------------------------GALMLLGP-TMNPKVAF- 290 (447)
Q Consensus 247 ~~-g~~g~~igG~l~~~~~~~~~l~~~~~---------------------------------~~~~~~g~-~~~~~~a~- 290 (447)
++ ++.| + |+++.++++++.+..... ......++ ......+.
T Consensus 201 ~l~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 277 (411)
T 3nnk_A 201 CLGGPSG--T-SPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGAR 277 (411)
T ss_dssp TTCCCSS--E-EEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHH
T ss_pred ccCCCCc--e-EEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHH
Confidence 74 5444 5 999999999888765330 00001111 11111121
Q ss_pred HHHccC-C-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 291 ELSERI-P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 291 ~~~~~~-~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
.++... + .+....+++.++++++.+.|++.+.++..|.. ...+.+++|.++...+...+.+.
T Consensus 278 ~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~ 341 (411)
T 3nnk_A 278 ECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLK----------------HKMNNVLGVVIPQGINGDQARKL 341 (411)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG----------------GBCSSEEEEECCTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcc----------------cccccEEEEECCCCCCHHHHHHH
Confidence 222211 1 15567778889999999999988665543320 02456999998633235566666
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHhh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~~ 440 (447)
|... +| +.++.|.. ...++.+|||+ + ..++++.++.+.++|+++.
T Consensus 342 l~~~--~g-i~v~~g~~-----------------------~~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~l 387 (411)
T 3nnk_A 342 MLED--FG-IEIGTSFG-----------------------PLHGKVWRIGTMG-YNARKDCVMTTLSALEAVL 387 (411)
T ss_dssp HHHH--HS-EEEEECCG-----------------------GGTTTEEEEECCG-GGCSHHHHHHHHHHHHHHH
T ss_pred HHHh--cC-eEEeCccC-----------------------CCCCCEEEEeCcc-CcCCHHHHHHHHHHHHHHH
Confidence 6542 23 44444410 11247899998 7 6656666666666665543
No 97
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.96 E-value=2.6e-27 Score=238.13 Aligned_cols=298 Identities=13% Similarity=0.061 Sum_probs=206.2
Q ss_pred CccccCCCCchHHHHHHHHHHHhCC--CeEEEeCChHHHH--HHHHHHhcC--C----------CCeEEEeCCCchhHHH
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALEGT--EAAYCTASGMSAI--SSVLMQLCS--S----------GGHVVAARTLYGGTHA 153 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~--~~al~~l~~--~----------gd~Vi~~~~~y~~~~~ 153 (447)
.+.|+. .....++++.||+++++ +.+++|+|+++++ ++++++++. + ||+|+++.|+|+++..
T Consensus 71 ~~~Y~~--~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~ 148 (427)
T 3ppl_A 71 VRNYGG--LDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS 148 (427)
T ss_dssp TTSSCC--SSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH
T ss_pred hcCCCC--CCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH
Confidence 344543 23346899999999986 4599999999999 578888776 6 8999999999999988
Q ss_pred HHHhhcCcccCeeEEEeCCC----CHHHHHHhhccCCceEEEEE-cCCCCCccccCHH---HHHHHH-HhcCCEEEEeCC
Q 013210 154 LLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNT 224 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~----d~~~l~~~i~~~~t~lV~i~-~~~NptG~v~~l~---~I~~la-~~~gi~livD~~ 224 (447)
.+. ..|.++..++.+ |+++|+++++++++++|+++ +++||||.+++.+ +|+++| ++||+++|+|++
T Consensus 149 ~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~ 223 (427)
T 3ppl_A 149 ITE-----RFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNA 223 (427)
T ss_dssp HHH-----HTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred HHH-----HcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECC
Confidence 773 257777777654 89999999944789999876 8999999999877 888888 999999999999
Q ss_pred CCCCCCCc--------c-------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH
Q 013210 225 FSPLVLSP--------A-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 289 (447)
Q Consensus 225 ~~~~~~~~--------~-------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a 289 (447)
|+.+.+.. . ..+.++++.|+||+ +++|.|+ ||+++++++++.+....... ....+.+.+.++
T Consensus 224 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~q~~~ 300 (427)
T 3ppl_A 224 YAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGV-SFFLTSAENRKWYTGHAGIR-GIGPNKVNQLAH 300 (427)
T ss_dssp TTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSC-EEEECCHHHHHHHHHHHHHH-CSCCCHHHHHHH
T ss_pred CcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccE-EEEEcCHHHHHHHHHHhhcc-cCCCCHHHHHHH
Confidence 96643321 1 33678999999999 6689998 99999999998887765521 123333444444
Q ss_pred HHHHccC----CcHHHHHHHHHHHHHHHHHHHHhC----C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH
Q 013210 290 FELSERI----PHLGLRMKEHCHRALIFARRMKKL----G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360 (447)
Q Consensus 290 ~~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~~----~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~ 360 (447)
...+... +++....+.+.++++.+.+.|.+. + ..+..|. .|.++++.++...
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-------------------~g~~~~~~~~~~~ 361 (427)
T 3ppl_A 301 ARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA-------------------GGYFISLDVVPGT 361 (427)
T ss_dssp HHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS-------------------BSSCEEEECSTTC
T ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC-------------------ccEEEEEECCcch
Confidence 4444431 223344455677777777777552 2 2443332 4678999998542
Q ss_pred HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHH
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALS 437 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~ 437 (447)
...+.+.|... | +.+..|+.+.. .. .+..++.+|||++ .. ++++.++.|.++++
T Consensus 362 -~~~~~~~l~~~---g-v~v~~~g~~~~----~~-------------~~~~~~~~Ris~~-~~~~~~i~~~~~~l~~~l~ 418 (427)
T 3ppl_A 362 -ASRVAELAKEA---G-IALTGAGSSYP----LR-------------QDPENKNLRLAPS-LPPVEELEVAMDGVATCVL 418 (427)
T ss_dssp -HHHHHHHHHHT---T-EECCCTTTTSG----GG-------------CCTTSCEEEECCS-SSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHC---C-CEEecCcCcCC----CC-------------CCCCCCeEEEECC-CCCHHHHHHHHHHHHHHHH
Confidence 55667777653 4 46555432110 00 0123588999999 64 34444555555555
Q ss_pred Hh
Q 013210 438 RM 439 (447)
Q Consensus 438 ~~ 439 (447)
++
T Consensus 419 ~~ 420 (427)
T 3ppl_A 419 LA 420 (427)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 98
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.96 E-value=1.9e-27 Score=237.71 Aligned_cols=292 Identities=12% Similarity=0.120 Sum_probs=202.5
Q ss_pred CchHHHHHHHHHHHhCCCe--E-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh--HHHHHHhhcCcccCeeEEEeCC
Q 013210 98 NPTVLNLSRQMAALEGTEA--A-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~--~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+..+++++.+++++|.+. + ++++||++|+.+++++++++||+|+++.+.|++ +...+ .. .|.++++++.
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~----~~-~g~~~~~v~~ 117 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIA----ER-YGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHH----HH-TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHH----Hh-cCCeeEEEec
Confidence 4567899999999999754 4 489999999999999999999999999999987 33333 22 6888888877
Q ss_pred C-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCC
Q 013210 173 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 173 ~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~s 245 (447)
+ |+++|++++.++++++|++++|+||||.+.|+++|.++|++||+++|+|++|+ ....+....++|+++.|+|
T Consensus 118 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~ 197 (416)
T 3isl_A 118 EWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQ 197 (416)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSS
T ss_pred CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCc
Confidence 6 89999999943689999999999999999999999999999999999999983 3444555668999999999
Q ss_pred cc-ccCCCCeeEEEEEcChHHHHHHHHHh-----------------------------------hhhhhhcCCC-ccHHH
Q 013210 246 KF-ISGGADIIAGAVCGPANLVNSMMDLH-----------------------------------QGALMLLGPT-MNPKV 288 (447)
Q Consensus 246 K~-~g~~g~~igG~l~~~~~~~~~l~~~~-----------------------------------~~~~~~~g~~-~~~~~ 288 (447)
|+ +|+.| + |+++.++++++.+.... .......++. .....
T Consensus 198 K~l~g~~g--~-g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (416)
T 3isl_A 198 KCLSVPSG--M-APITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLY 274 (416)
T ss_dssp STTCCCSS--E-EEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHH
T ss_pred cccCCCCC--e-EEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHH
Confidence 97 55444 5 89999999887776321 0000011111 11111
Q ss_pred HH-HHHccCC-c-HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013210 289 AF-ELSERIP-H-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL 365 (447)
Q Consensus 289 a~-~~~~~~~-~-l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l 365 (447)
+. .++..+. . +....+++.++++++.+.|++.+.++..|.. ...+.+++|.++...+...+
T Consensus 275 a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l 338 (416)
T 3isl_A 275 ALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDS----------------CKMPVVTCVEIPGGIDGESV 338 (416)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG----------------GBCTTEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCcc----------------ccCCcEEEEeCCCCCCHHHH
Confidence 11 2222211 1 5567778899999999999987665544320 02356999999633335677
Q ss_pred HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 366 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+.|... +| +.++.|.. ...++.+|||++...+.++.++.+.++|+++
T Consensus 339 ~~~L~~~--~g-i~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~ 386 (416)
T 3isl_A 339 RDMLLAQ--FG-IEIASSFG-----------------------PLAGKIWRIGTMGYSCRKENVLFVLAGLEAV 386 (416)
T ss_dssp HHHHHHH--HC-EECBCCCS-----------------------TTTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CC-EEEecCCC-----------------------CCCCCEEEEecccCCCcHHHHHHHHHHHHHH
Confidence 7777542 23 45555520 1235789999941233333344444444443
No 99
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.96 E-value=9.4e-28 Score=241.57 Aligned_cols=280 Identities=11% Similarity=0.086 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHh-----CC--Ce---EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcc-cCeeEEE
Q 013210 101 VLNLSRQMAALE-----GT--EA---AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA-CNITTTF 169 (447)
Q Consensus 101 ~~~l~~~ia~l~-----g~--~~---~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~~~~~ 169 (447)
..++++.+|+++ +. +. +++|+||++|+.+++++++++||+|+++.|.|+++...+ +. .|.++..
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~-----~~~~g~~~~~ 164 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVF-----NTRNGANLQT 164 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHH-----TTTTCCEEEE
T ss_pred CHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHH-----HHhcCCeEEE
Confidence 468999999998 54 57 999999999999999999999999999999999998776 23 5778777
Q ss_pred eCCC------CHHHHHHhhccC---CceEEEEEcCCCCCccccC---HHHHHHHHHh-----cCCEEEEeCCCCCCCCC-
Q 013210 170 VDIS------DHEMVNSAIVQG---RTKVLYFESISNPTLAVAN---IPELSRLAHD-----KGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 170 v~~~------d~~~l~~~i~~~---~t~lV~i~~~~NptG~v~~---l~~I~~la~~-----~gi~livD~~~~~~~~~- 231 (447)
++.+ |+++|++++ ++ ++++|++++|+||||.+.+ +++|+++|++ +|+++|+|++|+.+.+.
T Consensus 165 ~~~~~~~~~~d~~~l~~~l-~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~ 243 (430)
T 2x5f_A 165 YPIFDKDGHYTTDSLVEAL-QSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYED 243 (430)
T ss_dssp ECCBCTTSCBCSHHHHHHH-HHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSS
T ss_pred EeccCccCCcCHHHHHHHH-HhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCc
Confidence 7642 689999988 44 7899999999999999998 8899999999 99999999999655332
Q ss_pred ----c-c----C-CCC---eEEEeCCCccccCCCCeeEEEEEc---ChHHHHHHHHHhhhh---hhhcCCCccHHHHHHH
Q 013210 232 ----P-A----R-LGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGA---LMLLGPTMNPKVAFEL 292 (447)
Q Consensus 232 ----~-~----~-~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~---~~~~g~~~~~~~a~~~ 292 (447)
+ . . .+. ++++.|+||.+|++|.|+ ||+++ ++++++.+....... .....+.+.+.++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 322 (430)
T 2x5f_A 244 VYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRV-GFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHV 322 (430)
T ss_dssp SCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCC-EEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred ccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCe-EEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHH
Confidence 1 1 1 346 789999999999899998 89988 999988887654420 1122333333344444
Q ss_pred Hc-cCCcHHH---HHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013210 293 SE-RIPHLGL---RMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 364 (447)
Q Consensus 293 ~~-~~~~l~~---~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~ 364 (447)
+. ....... ..+++.++++++.+.|+ +.+..+..|. .|.++++.+++ .+...
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~-------------------~g~~~~~~~~~-~~~~~ 382 (430)
T 2x5f_A 323 LKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFN-------------------SGYFMAIKVHD-VDPEA 382 (430)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCC-------------------BSSEEEEEESS-SCHHH
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCC-------------------ceEEEEeCCCC-CCHHH
Confidence 43 2212233 56677888999999998 4444443221 34478999872 22456
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHH
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSR 438 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~ 438 (447)
+.+.|.. +.| +.+..| .++.+|||++ . +++++.++.|.+++++
T Consensus 383 ~~~~l~~--~~g-i~v~~g---------------------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 383 LRKHLID--KYS-IGVIAL---------------------------NATDIRIAFS-CVEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp HHHHHHH--HHC-EECEEC---------------------------SSSEEEEEGG-GSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCC-EEEecC---------------------------CCCeEEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence 6666654 023 343332 1478999999 5 2344445555555443
No 100
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=1.5e-27 Score=238.77 Aligned_cols=316 Identities=15% Similarity=0.126 Sum_probs=212.8
Q ss_pred cccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc------CCC
Q 013210 68 FTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC------SSG 138 (447)
Q Consensus 68 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~------~~g 138 (447)
+..+.+ +.+.+.+...++++.....|.....+...++++.+++++|++ .+++|+||++++.+++++++ ++|
T Consensus 39 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~g 118 (416)
T 1qz9_A 39 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPE 118 (416)
T ss_dssp CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCC
Confidence 444555 777777765566543221232223466789999999999975 69999999999999888876 889
Q ss_pred Ce-EEEeCCCchhHHHHHHhhcCccc--CeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc
Q 013210 139 GH-VVAARTLYGGTHALLTHFFPRAC--NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 215 (447)
Q Consensus 139 d~-Vi~~~~~y~~~~~~~~~~~~~~~--g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~ 215 (447)
|+ |+++.++|+++...+...... . |.++.+++. +++|++++ ++++++|++++++||||.+.|+++|.++|+++
T Consensus 119 d~vii~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~~--~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~ 194 (416)
T 1qz9_A 119 RRVIVTETSNFPTDLYIAEGLADM-LQQGYTLRLVDS--PEELPQAI-DQDTAVVMLTHVNYKTGYMHDMQALTALSHEC 194 (416)
T ss_dssp CCEEEEETTSCHHHHHHHHHHHHH-HCSSCEEEEESS--GGGHHHHC-STTEEEEEEESBCTTTCBBCCHHHHHHHHHHH
T ss_pred CcEEEEcCCCCCchHHHHHHHHHH-hcCCceEEEeCc--HHHHHHHh-CCCceEEEEeccccCcccccCHHHHHHHHHHc
Confidence 86 566667888776654322111 3 888998886 88899988 67899999999999999999999999999999
Q ss_pred CCEEEEeCCCC--CCCCCccCCCCeEEEeCCCcccc-CCCCeeEEEEEcChHHHHHHHHHhhhh----------------
Q 013210 216 GVTVVVDNTFS--PLVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA---------------- 276 (447)
Q Consensus 216 gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~---------------- 276 (447)
|+++|+|++|+ ....+...+++|+++.|+||+++ ++|. + |+++.++++++.+.....++
T Consensus 195 ~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~-~-g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~ 272 (416)
T 1qz9_A 195 GALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS-Q-AFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPS 272 (416)
T ss_dssp TCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC-C-CEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBC
T ss_pred CCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCC-e-EEEEECHHHHhccCCCccccCccccccCCCCccCCC
Confidence 99999999994 22223334478999999999974 4443 3 88888887766554321110
Q ss_pred ----hhhcCCC-ccHHH-HHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhcc
Q 013210 277 ----LMLLGPT-MNPKV-AFELSERI--PHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANK 344 (447)
Q Consensus 277 ----~~~~g~~-~~~~~-a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~ 344 (447)
....++. ..... +..++..+ ..+....+++.++++++.+.|++. +..+..|.. +
T Consensus 273 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~---~----------- 338 (416)
T 1qz9_A 273 NGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPRE---H----------- 338 (416)
T ss_dssp SSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSS---G-----------
T ss_pred cchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCC---H-----------
Confidence 0112222 11222 22223222 356677788899999999999875 555544320 0
Q ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC-C
Q 013210 345 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL-G 423 (447)
Q Consensus 345 ~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~-~ 423 (447)
...+++++|.+++ ...+.+.|... | +.+.. ..++.+|||++ . .
T Consensus 339 -~~~~~~~~~~~~~---~~~l~~~l~~~---g-i~~~~---------------------------~~~~~lRis~~-~~~ 382 (416)
T 1qz9_A 339 -AKRGSHVSFEHPE---GYAVIQALIDR---G-VIGDY---------------------------REPRIMRFGFT-PLY 382 (416)
T ss_dssp -GGBCSEEEEECTT---HHHHHHHHHTT---T-EECEE---------------------------ETTTEEEEECC-TTT
T ss_pred -HHcCCEEEEecCC---HHHHHHHHHhC---C-cEecc---------------------------CCCCeEEEeCc-ccC
Confidence 0135689999875 35667777652 3 22210 02478999997 4 5
Q ss_pred CHHHHHHHHHHHHHHh
Q 013210 424 TLDQRWSQFEKALSRM 439 (447)
Q Consensus 424 ~~~~~i~~l~~al~~~ 439 (447)
.+++.++.+.++|+++
T Consensus 383 ~t~~~i~~~~~~l~~~ 398 (416)
T 1qz9_A 383 TTFTEVWDAVQILGEI 398 (416)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5666666666666554
No 101
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=3.2e-27 Score=234.39 Aligned_cols=293 Identities=12% Similarity=0.031 Sum_probs=201.1
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
....++++.+|+++|.+ .+++|+||++|+.+++++++++||+|+++.++|+++. .. ..... .|.++..++.+
T Consensus 42 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~ 118 (392)
T 2z9v_A 42 LLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG-FG-YWAKR-YSPHLLEIEVPYNE 118 (392)
T ss_dssp HHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHH-HCSCEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH-HH-HHHHH-cCCceEEeeCCCCC
Confidence 45688999999999974 6999999999999999999999999999999998873 22 22222 57777777653
Q ss_pred --CHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCccc
Q 013210 174 --DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFI 248 (447)
Q Consensus 174 --d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~ 248 (447)
|+++|++++++ +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+ ....+...+++|+++.|+||++
T Consensus 119 ~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~ 198 (392)
T 2z9v_A 119 AIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCL 198 (392)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTT
T ss_pred CCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccc
Confidence 89999999842 579999999999999999999999999999999999999994 2333444457899999999965
Q ss_pred c-CCCCeeEEEEEcChHHHHHHHHHhh-----------------hhhhhcCCCccH-HHH-HHHHccCC-c-HHHHHHHH
Q 013210 249 S-GGADIIAGAVCGPANLVNSMMDLHQ-----------------GALMLLGPTMNP-KVA-FELSERIP-H-LGLRMKEH 306 (447)
Q Consensus 249 g-~~g~~igG~l~~~~~~~~~l~~~~~-----------------~~~~~~g~~~~~-~~a-~~~~~~~~-~-l~~~~~~~ 306 (447)
+ ++| + |+++.++++++.++.... ......++.... ..+ ..++..+. . +....+++
T Consensus 199 ~~~~g--~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~ 275 (392)
T 2z9v_A 199 GAPPG--L-TMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARH 275 (392)
T ss_dssp CCCSC--C-EEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCCc--e-eEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4 455 4 899999998887754210 000112222111 111 12222221 1 45566778
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
.++++++.+.|++.+.++..|. +. ...+.+++|.++.......+.+.|... +| +.+..|..
T Consensus 276 ~~~~~~l~~~L~~~g~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-i~v~~g~~- 336 (392)
T 2z9v_A 276 ALTAKAMRAGVTAMGLSVWAAS----DS-----------IASPTTTAVRTPDGVDEKALRQAARAR--YG-VVFSSGRG- 336 (392)
T ss_dssp HHHHHHHHHHHHHTTCCBSSSS----GG-----------GBCTTEEEEECCTTCCHHHHHHHHHHH--HC-EECEECCG-
T ss_pred HHHHHHHHHHHHHcCCeeccCC----cc-----------ccCCceEEEECCCCCCHHHHHHHHHhc--CC-EEEecCCC-
Confidence 8999999999988755554321 00 013568899986322245677777652 23 45555521
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~ 439 (447)
+ ..++.+|||+ + ...+++.++.+.++|+++
T Consensus 337 -------~---------------~~~~~lRi~~~~-~~~~~~~i~~~~~~l~~~ 367 (392)
T 2z9v_A 337 -------E---------------TLGKLTRIGHMG-PTAQPIYAIAALTALGGA 367 (392)
T ss_dssp -------G---------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred -------C---------------CCCCeEEEeCcc-cccCHHHHHHHHHHHHHH
Confidence 0 1247899995 5 345555566655555544
No 102
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=1.5e-27 Score=235.49 Aligned_cols=290 Identities=13% Similarity=0.098 Sum_probs=201.4
Q ss_pred chHHHHHHHHHHHhCCC---eEE-EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 99 PTVLNLSRQMAALEGTE---AAY-CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~-~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
+..+++++.+++++|.+ .++ +|+||++|+++++++++++||+|+++.+.|.+.... ..... .|.++..++.+
T Consensus 52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~--~~~~~-~g~~~~~v~~~~ 128 (376)
T 3f0h_A 52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFV--QLCEI-HEIPYVALKLEH 128 (376)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHH--HHHHH-TTCCEEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHH--HHHHH-cCCceEEEeCCC
Confidence 56688999999999875 444 589999999999999999999999999877764322 11222 57777776643
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC--CCCccCCCCeEEEeCCCcc
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKF 247 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--~~~~~~~g~di~~~S~sK~ 247 (447)
|+++|++++ ++++++|++++|+||||.+.|+++|.++|++||+++|+|++|+.. ..+....++|+++.|+||+
T Consensus 129 ~~~~d~~~l~~~~-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~ 207 (376)
T 3f0h_A 129 GKKLTKEKLYEYD-NQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKV 207 (376)
T ss_dssp TCCCCHHHHHTTT-TSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTT
T ss_pred CCCCCHHHHHHhh-ccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCccc
Confidence 899999988 788999999999999999999999999999999999999998433 3334445789999999999
Q ss_pred cc-CCCCeeEEEEEcChHHHHHHHHHhhhhh-------------hhcCCCccH---HHHHHHHccC--C-cHHHHHHHHH
Q 013210 248 IS-GGADIIAGAVCGPANLVNSMMDLHQGAL-------------MLLGPTMNP---KVAFELSERI--P-HLGLRMKEHC 307 (447)
Q Consensus 248 ~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~-------------~~~g~~~~~---~~a~~~~~~~--~-~l~~~~~~~~ 307 (447)
++ ++| + |+++.++++++.+........ .....+++. .++..++..+ . .+....++..
T Consensus 208 l~~~~G--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 284 (376)
T 3f0h_A 208 LACPPG--I-SVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIA 284 (376)
T ss_dssp TCCCSS--C-EEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccCCCc--e-EEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99 555 4 888999998887764211000 001122222 1122222211 1 3556667778
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccc
Q 013210 308 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++++++.+.|++.+.++..+. ..+.++.+...+. ....+.+.|... +| +.++.|..
T Consensus 285 ~~~~~l~~~L~~~~~~~~~~~------------------~~~~~~~~~~~~~-~~~~l~~~l~~~--~g-i~v~~g~~-- 340 (376)
T 3f0h_A 285 SQAADFRAKIKDLPFELVSES------------------PANGVTSVHPTTA-NAYDIFLKLKDE--YG-IWICPNGG-- 340 (376)
T ss_dssp HHHHHHHHHTTTSSEEECCSS------------------BBTTEEEEEESSS-CHHHHHHHHHHH--SS-EECEECCG--
T ss_pred HHHHHHHHHHHHcCCccCccc------------------cCceEEEEeCCCC-CHHHHHHHHHHh--CC-EEEecCcc--
Confidence 888999999988765443221 1233555554432 245677777652 23 45554410
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
...++.+|||++ ...+++.++.+.++|+++.+
T Consensus 341 ---------------------~~~~~~lRis~~-~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 341 ---------------------EMKDTIFRVGHI-GALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp ---------------------GGTTTCEEEECC-SSCCHHHHHHHHHHHHHHHH
T ss_pred ---------------------ccCCCEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 012478999999 77788888888888876643
No 103
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.96 E-value=1e-26 Score=232.66 Aligned_cols=278 Identities=15% Similarity=0.067 Sum_probs=195.6
Q ss_pred HHHHHHHHHHh----CCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 102 LNLSRQMAALE----GTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 102 ~~l~~~ia~l~----g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.++++.+++++ +.+ .+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++..
T Consensus 82 ~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~ 156 (413)
T 3t18_A 82 KDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRKICE-----EFGRNFKTFEFFT 156 (413)
T ss_dssp HHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHHHHH-----HHTCEEEEECCBC
T ss_pred HHHHHHHHHHHhcccCccccCcEEEcCccHHHHHHHHHHhcCCCCEEEECCCCcccHHHHHH-----HhCCeEEEeeccC
Confidence 45677777654 456 79999999999999999999999999999999999987763 257788888751
Q ss_pred -----CHHHHHHhhcc---CCce-EEEEEcC-CCCCccccCHHHH---HHHHH------hcCCEEEEeCCCCCCCCCcc-
Q 013210 174 -----DHEMVNSAIVQ---GRTK-VLYFESI-SNPTLAVANIPEL---SRLAH------DKGVTVVVDNTFSPLVLSPA- 233 (447)
Q Consensus 174 -----d~~~l~~~i~~---~~t~-lV~i~~~-~NptG~v~~l~~I---~~la~------~~gi~livD~~~~~~~~~~~- 233 (447)
|+++|++++++ ++++ +|++++| +||||.+.+.+++ +++|+ +||+++|+|++|..+.+...
T Consensus 157 ~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~ 236 (413)
T 3t18_A 157 DDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQ 236 (413)
T ss_dssp TTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSST
T ss_pred CCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhh
Confidence 89999998832 1676 8888999 9999999986655 55565 89999999999965543211
Q ss_pred -----C----CCC---eEEEeCCCccccCCCCeeEEEEEc---ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc
Q 013210 234 -----R----LGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH 298 (447)
Q Consensus 234 -----~----~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~ 298 (447)
. ++. ++++.|+||.+|++|.|+ ||+++ ++++++.+...+...........+.....++...++.
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 315 (413)
T 3t18_A 237 QRKFFEKFSNLPRNLFVVVAFSMSKSHTAYGLRS-GAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERA 315 (413)
T ss_dssp TTGGGGGGTTCCTTEEEEEEEEHHHHTTCGGGCC-EEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSH
T ss_pred HHHHHHHHhhcCCCeeEEEEEecCccCCCcCcCc-EEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcC
Confidence 1 111 388899999999999999 99887 8999988877654221111122222222222222222
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013210 299 ---------LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 369 (447)
Q Consensus 299 ---------l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l 369 (447)
+....+++.++++++.+.|++.+..+..|. .|.++++.+.+ ...+.+.|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------------------~~~~~~~~~~~---~~~~~~~l 373 (413)
T 3t18_A 316 ENKKIYEQELVDLRNMLKSRADVFVTAAKENKLTMIPYF-------------------GGFFTFIPTDK---AFDIVKDL 373 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC-------------------SSSCEEEECSC---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC-------------------ceEEEEeCCCC---HHHHHHHH
Confidence 223455678888999999988866554332 34466776644 34555556
Q ss_pred hcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 370 QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 370 ~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.. .| +.+..| ++.+|||++ ..+.+++++.|.++++++.
T Consensus 374 ~~---~g-v~v~~g----------------------------~~~iRis~~-~~~~~~~l~~l~~~l~~~~ 411 (413)
T 3t18_A 374 EK---EN-IFTIPS----------------------------AKGIRVAIC-GVGEEKIPKLVQRLAFYTN 411 (413)
T ss_dssp HH---TT-EECEEC----------------------------SSEEEECTT-TSCGGGHHHHHHHHHHHHH
T ss_pred Hh---CC-EEEecC----------------------------CCceEEEEe-eCCHHHHHHHHHHHHHHHh
Confidence 54 23 343333 367999999 7677777999999998775
No 104
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.96 E-value=2.6e-27 Score=237.75 Aligned_cols=263 Identities=21% Similarity=0.265 Sum_probs=204.4
Q ss_pred CCCCccccCCCCchHHHHHHHHHHHhCCCeEEE---eCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHHHHHH------
Q 013210 87 DRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------ 156 (447)
Q Consensus 87 ~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~---tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~------ 156 (447)
+.++|.|++ +..+++++.+++++|.+...+ ++||++|+..++.+++++||+|+++. +.|+++...+.
T Consensus 56 ~~~g~~y~~---~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~ 132 (431)
T 3ht4_A 56 PTTGYGYDD---IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGV 132 (431)
T ss_dssp CCCTTCCSC---HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSS
T ss_pred CCCCCCCCh---hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhccccc
Confidence 345566654 457899999999999987665 67999999999999999999999998 99998876652
Q ss_pred hhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEc-CCCCCcc---ccCHHHHHHHHHh--cCCEEEEeCCC
Q 013210 157 HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES-ISNPTLA---VANIPELSRLAHD--KGVTVVVDNTF 225 (447)
Q Consensus 157 ~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~-~~NptG~---v~~l~~I~~la~~--~gi~livD~~~ 225 (447)
..+.. .|+++++++.+ |+++|++++ +++|++|++++ |+||+|. +.++++|+++|++ +|+++|+|++|
T Consensus 133 ~~~~~-~G~~~~~v~~~~~~~~d~e~l~~~l-~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~ 210 (431)
T 3ht4_A 133 GSFKE-YNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCY 210 (431)
T ss_dssp SCSGG-GTCEEEECCBCTTSSBCHHHHHHHC-CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred chHHH-cCCEEEEeCCCCCCCcCHHHHHhhc-CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 22333 68999999874 999999999 78999999995 5555554 4578999999999 99999999999
Q ss_pred CCCC--CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh--hhhcCCCccHHHHHHHHccCCcHHH
Q 013210 226 SPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA--LMLLGPTMNPKVAFELSERIPHLGL 301 (447)
Q Consensus 226 ~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~--~~~~g~~~~~~~a~~~~~~~~~l~~ 301 (447)
+.+. ..+..+++|++++|+||++|+++...||++++++++++.+....... ....+.+.. .++.++..++.+..
T Consensus 211 ~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~--~~~~~~~~l~~~~~ 288 (431)
T 3ht4_A 211 GEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLY--SLQEMYQGFFLAPH 288 (431)
T ss_dssp CTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCS--CSHHHHHHHHHHHH
T ss_pred hhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHH--HHHHHHhHhhhHHH
Confidence 5554 46777899999999999998755445799999999999887644311 111222222 12233445566777
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
++++..+++.++++.|++++.++ +|. ++.+ +.+.++.|.+++.+.+.+|++.|+.
T Consensus 289 ~~~~~~~~a~~l~~~L~~~g~~v-~p~-~~~~-------------~~~li~~i~l~~~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 289 VAGQALKGAIFTAAFLEKLGMNT-SPA-WNAP-------------RTDLIQSVQFDDKDRMIAFCQAIQY 343 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCE-ESC-TTSC-------------CSSSCCEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCEe-cCC-CCCC-------------CccEEEEEEeCCHHHHHHHHHHHHh
Confidence 88899999999999999998877 565 4433 3455899999988888999999986
No 105
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.96 E-value=6.9e-28 Score=242.60 Aligned_cols=334 Identities=15% Similarity=0.105 Sum_probs=209.3
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--------CCCCeEEE
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC--------SSGGHVVA 143 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~--------~~gd~Vi~ 143 (447)
+++.+.+...+++|.+.|.+++...+..+++++.+|+++|.+ .++||+||++|+.+++++++ ++||+|++
T Consensus 36 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~ 115 (432)
T 3a9z_A 36 QAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQ 115 (432)
T ss_dssp HHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccc
Confidence 666666655667777666666555667789999999999974 69999999999999998875 47875555
Q ss_pred eCCCc-------------hhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccC
Q 013210 144 ARTLY-------------GGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN 204 (447)
Q Consensus 144 ~~~~y-------------~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~ 204 (447)
..|.| +++...+..+... .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|
T Consensus 116 ~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 193 (432)
T 3a9z_A 116 ISPEEGTRPHFITCTVEHDSIRLPLEHLVED-QVAEVTFVPVSKVNGQVEVEDILAAV-RPTTCLVTIMLANNETGVIMP 193 (432)
T ss_dssp ------CCCEEEEETTCCHHHHHHHHHHHHT-TSCEEEEECCCTTTSSCCHHHHHHTC-CTTEEEEECCSBCTTTCBBCC
T ss_pred cccccccCCeEEEecCcchhHHHHHHHHHHh-cCcEEEEEecCcccCCcCHHHHHHhc-cCCceEEEEECcccCcccccC
Confidence 55555 4444444333223 58888888763 789999999 778999999999999999999
Q ss_pred HHHHHHHHHhcC----------CEEEEeCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHH-HHHHHH
Q 013210 205 IPELSRLAHDKG----------VTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMD 271 (447)
Q Consensus 205 l~~I~~la~~~g----------i~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~ 271 (447)
+++|.++|+++| +++|+|++|+.. ..+....+.|+++.|+||++| + ++ |+++.+++. ...+..
T Consensus 194 ~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~--~~-G~~~~~~~~~~~~~~~ 269 (432)
T 3a9z_A 194 ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-P--RI-GALYVRGVGKLTPLYP 269 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-C--SC-EEEEETTBTTTBCCCC
T ss_pred HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcC-C--cc-eEEEEccccccCCcCc
Confidence 999999999999 999999999432 223333478999999999986 3 35 999887654 222221
Q ss_pred Hhhh----hhhhcCCCc-cHH-HHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhc
Q 013210 272 LHQG----ALMLLGPTM-NPK-VAFELSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMAN 343 (447)
Q Consensus 272 ~~~~----~~~~~g~~~-~~~-~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~ 343 (447)
...+ .....++.. ... ++..++..+ +.+....+++.++++++.+.|+++ +..+..++....
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~----------- 338 (432)
T 3a9z_A 270 MLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPG----------- 338 (432)
T ss_dssp SCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTT-----------
T ss_pred eeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCc-----------
Confidence 1000 000112211 112 221222221 234556677888899999999875 444432221000
Q ss_pred cCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEE
Q 013210 344 KEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMS 418 (447)
Q Consensus 344 ~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS 418 (447)
....+++++|.+.+. .....+.+.+.. +.++.|..+... +.......+...|+. .+.||||
T Consensus 339 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~------i~~~~G~~~~~~-------~~~~~~~~l~~~g~~~~~~~~~iRis 404 (432)
T 3a9z_A 339 -VERLPNTCNFSIQGSQLRGYMVLAQCQT------LLASVGASCHSD-------HEDRPSPVLLSCGIPVDVARNAVRLS 404 (432)
T ss_dssp -CCBCTTEEEEEECSTTCCHHHHHHHCSS------EECBSSCGGGGG-------GTTSCCHHHHHTTCCHHHHTTEEEEE
T ss_pred -ccCCCCEEEEEeCCCCCcHHHHHHHhcC------eEEeccccccCC-------CCCCccHHHHhcCCCccccCceEEEE
Confidence 002455889998742 123456555542 456666433210 001122344445654 4799999
Q ss_pred eCCCCCHHHHHHHHHHHHHHh
Q 013210 419 VGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 419 ~g~~~~~~~~i~~l~~al~~~ 439 (447)
++ ..++++.++.+.++|+++
T Consensus 405 ~~-~~~t~eei~~~~~~l~~~ 424 (432)
T 3a9z_A 405 VG-RSTTRAEVDLIVQDLKQA 424 (432)
T ss_dssp CC-TTCCHHHHHHHHHHHHHH
T ss_pred cC-CCCCHHHHHHHHHHHHHH
Confidence 99 776677777776666654
No 106
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=7.6e-28 Score=239.15 Aligned_cols=286 Identities=12% Similarity=0.131 Sum_probs=200.6
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCC----------CCeEEEeCCCchhHHHHHHhhcCc----
Q 013210 96 HFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSS----------GGHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~----------gd~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
+..+..+++++.+++++|.+.++||+||++|+.++++.+..+ +++|++..+.|++...........
T Consensus 75 ~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 154 (392)
T 3ruy_A 75 FHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYK 154 (392)
T ss_dssp SEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTT
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhc
Confidence 456788999999999999999999999999999999876543 679999999998765544221110
Q ss_pred ----ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 162 ----ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 162 ----~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
.....+..++.+|+++|++++ ++++++|++++++||||.+.| +++|.++|++||+++|+|++|+++...
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~ 233 (392)
T 3ruy_A 155 RGFGPMLPGIIVIPYGDLEALKAAI-TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK 233 (392)
T ss_dssp TTCCSCCSSEEEECTTCHHHHHHHC-CTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS
T ss_pred cccCCCCCCCeeeCcccHHHHHHHh-ccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc
Confidence 001235667777999999999 688999999999999999998 999999999999999999999655321
Q ss_pred -----ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 232 -----PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 232 -----~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
......|+++ +||.+++ | .++ |+++.++++++.+....... ...++.+.+.++..++..+.. ....++
T Consensus 234 ~~~~~~~~~~~d~~~--~SK~l~g-G~~~~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 307 (392)
T 3ruy_A 234 VFACDWDNVTPDMYI--LGKALGG-GVFPI-SCAAANRDILGVFEPGSHGS-TFGGNPLACAVSIAALEVLEE-EKLTER 307 (392)
T ss_dssp SSGGGGGTCCCSEEE--ECGGGGT-TTSCC-EEEEECHHHHTTCCTTSSCC-SSTTCHHHHHHHHHHHHHHHH-TTHHHH
T ss_pred chhhhccCCCCCEEE--EchhhhC-Chhhh-EEEEECHHHHhhhccCCcCC-CCCCCHHHHHHHHHHHHHHHh-hhHHHH
Confidence 1122457664 6799885 6 787 99999998877665443311 122222223333333322211 345667
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
+.++++++.+.|++.+.. .....+ +.|+++++.++. ....+.+.|... | +.++.|
T Consensus 308 ~~~~~~~l~~~L~~~~~~----~~~~~~-------------~~g~~~~~~~~~--~~~~l~~~l~~~---g-i~v~~~-- 362 (392)
T 3ruy_A 308 SLQLGEKLVGQLKEIDNP----MITEVR-------------GKGLFIGIELNE--PARPYCEQLKAA---G-LLCKET-- 362 (392)
T ss_dssp HHHHHHHHHHHHTTCCCT----TEEEEE-------------EETTEEEEEESS--CSHHHHHHHHTT---T-EECCCB--
T ss_pred HHHHHHHHHHHHHHhcCC----CceEEE-------------eeeeEEEEEEcc--hHHHHHHHHHHC---C-cEEecC--
Confidence 788899999999876421 100000 246789999875 356677777753 3 343332
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 363 -------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 390 (392)
T 3ruy_A 363 -------------------------HENVIRIAPP-LVISEEDLEWAFQKIKAV 390 (392)
T ss_dssp -------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1478999998 777788888887777654
No 107
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.96 E-value=4.9e-27 Score=231.44 Aligned_cols=307 Identities=17% Similarity=0.205 Sum_probs=218.1
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++|+.+|+++|.+.+++|+|||+|+.++++++ +++||+|+++.++|+++...+. ..|.++++++.+
T Consensus 33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~~~~~~~ 107 (367)
T 3nyt_A 33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVA-----LLGAKPVYVDIDPR 107 (367)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCc
Confidence 45778999999999999999999999999999999998 8899999999999999988773 268888888765
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC--eEEEeCC--
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVVHSI-- 244 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~--di~~~S~-- 244 (447)
|+++|++++ ++++++|+ |+||+|.+.|+++|.++|+++|+++|+|++|+ +..++....+. |+++.||
T Consensus 108 ~~~~d~~~l~~~i-~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~ 183 (367)
T 3nyt_A 108 TYNLDPQLLEAAI-TPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFP 183 (367)
T ss_dssp TCSBCGGGTGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCT
T ss_pred cCCcCHHHHHHhc-CcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCC
Confidence 889999999 78899888 78899999999999999999999999999994 34444433343 9999997
Q ss_pred CccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh--------hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 013210 245 SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~--------~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~ 315 (447)
+|+++++|. ||+++. ++++.+.++..+..... .....+.+..++..+..++.+....++..++++++.+
T Consensus 184 ~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~ 261 (367)
T 3nyt_A 184 SAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDL 261 (367)
T ss_dssp TSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998675 588876 57788887765542110 0123345555555555556667777788888899999
Q ss_pred HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 316 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 316 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
.|++.+..+.... .... ....++.+.+++ ...+.+.|...+ +.++.+....+-..|...
T Consensus 262 ~L~~~~~~~~~~~--~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~G----I~~~~~~~~~~~~~~~~~ 320 (367)
T 3nyt_A 262 SLKQVGIGTPFIE--VNNI------------SVYAQYTVRMDN---RESVQASLKAAG----VPTAVHYPIPLNKQPAVA 320 (367)
T ss_dssp HHHHTTCCCCCCC--TTEE------------CCCSSEEEECSS---HHHHHHHHHHHT----CCCBCSCSSCGGGSGGGC
T ss_pred HhccCCeeccCCC--CCCc------------eeeEEEEEEeCC---HHHHHHHHHHCC----CceeccCCCccccChhhh
Confidence 9998764332111 1000 112255666653 456667776533 566655432222222221
Q ss_pred -cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 396 -TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 396 -~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
....++..+.. ....||++++ ...++++++.+.+++++..
T Consensus 321 ~~~~~~~~~~~~----~~~~l~lp~~-~~~t~~~i~~v~~~~~~~~ 361 (367)
T 3nyt_A 321 DEKAKLPVGDKA----ATQVMSLPMH-PYLDTASIKIICAALTNLE 361 (367)
T ss_dssp CTTCCCHHHHHH----HHHEEEECCC-TTCCHHHHHHHHHHHHC--
T ss_pred ccCCCChHHHHH----HhCeEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 11122221111 2467999999 9999999999999987654
No 108
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=2.3e-27 Score=232.64 Aligned_cols=289 Identities=16% Similarity=0.134 Sum_probs=200.4
Q ss_pred chHHHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHH-HHHHhhcCcccCeeEEEeCC
Q 013210 99 PTVLNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTH-ALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~-~~~~~~~~~~~g~~~~~v~~ 172 (447)
+...++++.+|+++|.. .+++|+||++|+.+++++++++||+|++.. +.|+... ..+. . .|.++..++.
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~----~-~g~~~~~v~~ 111 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG----L-MGIAHHAYDC 111 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHH----H-HTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHH----H-hCCceEEEeC
Confidence 56789999999999942 599999999999999999988999987765 5555432 2221 2 5777777765
Q ss_pred -----CCHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC--CCCCccCCCCeEEEeCC
Q 013210 173 -----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSI 244 (447)
Q Consensus 173 -----~d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~--~~~~~~~~g~di~~~S~ 244 (447)
.|+++|++++++. ++++|++.+++||||.+.|+++|.++|++||+++|+|++|+. ...+....++|+++.|+
T Consensus 112 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~ 191 (366)
T 1m32_A 112 GEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSA 191 (366)
T ss_dssp CTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEES
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecC
Confidence 3899999998432 589999999999999999999999999999999999999942 23333345789999999
Q ss_pred Cccc-cCCCCeeEEEEEcChHHHHHHHHHhhhh----------h----hhcCCCccHH---HHHHHHccCCc---HHHHH
Q 013210 245 SKFI-SGGADIIAGAVCGPANLVNSMMDLHQGA----------L----MLLGPTMNPK---VAFELSERIPH---LGLRM 303 (447)
Q Consensus 245 sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~----------~----~~~g~~~~~~---~a~~~~~~~~~---l~~~~ 303 (447)
||++ ++.| + |+++.++++++.+....... . .....+.+.. ++..++..+.. +....
T Consensus 192 ~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~ 268 (366)
T 1m32_A 192 NKCIQGVPG--F-AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARH 268 (366)
T ss_dssp SSTTCCCSS--E-EEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccccCCCc--e-EEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHH
Confidence 9977 4444 5 99999888776553210000 0 0000122222 22222222211 45566
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhccccccccccc
Q 013210 304 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
+++.++++++.+.|++.+.++..|.. + ..|.+++|.++. ......+.+.|... | +.+.
T Consensus 269 ~~~~~~~~~l~~~L~~~~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~ 328 (366)
T 1m32_A 269 QRYQQNQRSLVAGMRALGFNTLLDDE---L-------------HSPIITAFYSPEDPQYRFSEFYRRLKEQ---G-FVIY 328 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBSSCGG---G-------------BCSSEEEEECCCCTTCCHHHHHHHHHHT---T-EECE
T ss_pred HHHHHHHHHHHHHHHHCCCeeccCch---h-------------cCceEEEEEcCccCCCCHHHHHHHHHHC---C-EEEE
Confidence 77889999999999887554433210 0 134589999873 22356677777652 3 4554
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.|.. + ..+.+|||++ ..++++.++.+.++|+++.
T Consensus 329 ~~~~--------~----------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 329 PGKV--------S----------------QSDCFRIGNI-GEVYAADITALLTAIRTAM 362 (366)
T ss_dssp ECCC--------S----------------SSCEEEEECC-SSCCHHHHHHHHHHHHHHC
T ss_pred CCcC--------C----------------CCCEEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 4421 1 2478999999 8888888888888887663
No 109
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.95 E-value=5.1e-27 Score=233.25 Aligned_cols=291 Identities=14% Similarity=0.122 Sum_probs=197.9
Q ss_pred chHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC---
Q 013210 99 PTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--- 172 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~--- 172 (447)
....++++.+|+++|.+ .+++|+||++|+.+++++++++||+|+++.++|+++.. . ..... .|.+++.++.
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~-~-~~~~~-~g~~~~~v~~~~~ 127 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERA-V-EMSER-YGADVRTIEGPPD 127 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHH-H-HHHHH-TTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHH-H-HHHHH-cCCceEEecCCCC
Confidence 45789999999999974 58999999999999999999999999999999998741 1 11122 6888888874
Q ss_pred --CCHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCcc
Q 013210 173 --SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKF 247 (447)
Q Consensus 173 --~d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~ 247 (447)
.|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+ ....+...+++|+++.|+||+
T Consensus 128 ~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~ 206 (396)
T 2ch1_A 128 RPFSLETLARAI-ELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKV 206 (396)
T ss_dssp SCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-C
T ss_pred CCCCHHHHHHHH-HhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCcc
Confidence 3899999999 55 79999999999999999999999999999999999999994 222334455789999999997
Q ss_pred ccCCCCeeEEEEEcChHHHHHHHHHh--------------hhh------hhhcCCCc--cHHHHHHHHccC--CcHHHHH
Q 013210 248 ISGGADIIAGAVCGPANLVNSMMDLH--------------QGA------LMLLGPTM--NPKVAFELSERI--PHLGLRM 303 (447)
Q Consensus 248 ~g~~g~~igG~l~~~~~~~~~l~~~~--------------~~~------~~~~g~~~--~~~~a~~~~~~~--~~l~~~~ 303 (447)
++++. .+ |+++.++++++.+.... ... ....++.. .+.++..++..+ +.+....
T Consensus 207 ~~~~~-g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 284 (396)
T 2ch1_A 207 LGAPP-GI-TPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQI 284 (396)
T ss_dssp CCCCS-SC-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCCC-Ce-EEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHH
Confidence 76442 24 88988888877764310 000 00112121 122222233322 2355677
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 304 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+++.++++++.+.|++++.++..|.- .+..+.+++|.++...+...+.+.|... +| +.+..|
T Consensus 285 ~~~~~~~~~l~~~L~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~g-i~v~~g 346 (396)
T 2ch1_A 285 KRRIECAQILYEGLGKMGLDIFVKDP---------------RHRLPTVTGIMIPKGVDWWKVSQYAMNN--FS-LEVQGG 346 (396)
T ss_dssp HHHHHHHHHHHHHHHHHTCCBSSCSG---------------GGBCTTEEEEECCTTCCHHHHHHHHHHH--HC-BCCBCC
T ss_pred HHHHHHHHHHHHHHHHCCCeeccCCc---------------cccCCceEEEEcCCCCCHHHHHHHHHHh--CC-EEEecC
Confidence 78889999999999887655543320 0123458899986322355677776541 23 455444
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHH
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~ 437 (447)
.. + ..++.+|||+ + ...+++.++.+.++|+
T Consensus 347 ~~--------~---------------~~~~~iRi~~~~-~~~~~e~i~~~~~~l~ 377 (396)
T 2ch1_A 347 LG--------P---------------TFGKAWRVGIMG-ECSTVQKIQFYLYGFK 377 (396)
T ss_dssp CG--------G---------------GTTTEEEEECCG-GGCSHHHHHHHHHHHH
T ss_pred cc--------c---------------cCCCEEEEECCC-CcCCHHHHHHHHHHHH
Confidence 21 1 1257899999 6 4334444444444443
No 110
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.95 E-value=6.8e-27 Score=234.03 Aligned_cols=257 Identities=17% Similarity=0.146 Sum_probs=178.3
Q ss_pred chHHHHHHHHHHHh------C--CCeEEEeCChHHHHHHHHHHhcCCCC-----eEEEe-CCCchhHHHHHHhhcC-ccc
Q 013210 99 PTVLNLSRQMAALE------G--TEAAYCTASGMSAISSVLMQLCSSGG-----HVVAA-RTLYGGTHALLTHFFP-RAC 163 (447)
Q Consensus 99 ~~~~~l~~~ia~l~------g--~~~~~~tsggt~A~~~al~~l~~~gd-----~Vi~~-~~~y~~~~~~~~~~~~-~~~ 163 (447)
....++++.+|+++ + .+.+++|+||++|+++++++++++|| +|+++ .|+|+++...+..... ...
T Consensus 75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~ 154 (417)
T 3g7q_A 75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA 154 (417)
T ss_dssp TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEEC
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccc
Confidence 34578999999886 3 35699999999999999999999987 89997 9999988765421100 112
Q ss_pred CeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCC----CC
Q 013210 164 NITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL----VL 230 (447)
Q Consensus 164 g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~----~~ 230 (447)
+..+..++.+ |+++|+ + ++++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.+ .+
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~--~-~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~ 231 (417)
T 3g7q_A 155 RPNIELLPEGQFKYHVDFEHLH--I-GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIF 231 (417)
T ss_dssp CCEEEEEGGGEEEEECCGGGCC--C-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBC
T ss_pred cCcccccCCcccccccCHHHhc--c-ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccc
Confidence 4445545432 777776 5 678999999999999999998 889999999999999999999532 11
Q ss_pred ---CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHH---H-HH
Q 013210 231 ---SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG---L-RM 303 (447)
Q Consensus 231 ---~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~---~-~~ 303 (447)
.+...+.++++.|+|| ++++|.|+ ||++.++++++.+....... ...++.+.+.++...+....... . ..
T Consensus 232 ~~~~~~~~~~~i~~~s~sK-~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 308 (417)
T 3g7q_A 232 SEARPLWNPNIILCMSLSK-LGLPGSRC-GIIIANDKTITAIANMNGII-SLAPGGMGPAMMCEMIKRNDLLRLSETVIK 308 (417)
T ss_dssp SCCCCCCCTTEEEEEESGG-GTCTTSCC-EEEECCHHHHHHHHHHHHHH-CCCCCSHHHHHHHHHHHTTCHHHHHHHTHH
T ss_pred cccccCCCCCEEEEEechh-ccCCCcce-EEEEeCHHHHHHHHHhhcce-eeCCCcHHHHHHHHHHcCcchHHHHHHHHH
Confidence 1222468999999999 58899998 99999999999888765522 12334444554444444433221 2 33
Q ss_pred HHHHHHHHHHHHHHHh-C---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccc
Q 013210 304 KEHCHRALIFARRMKK-L---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~-~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~ 378 (447)
+++.++++.+.+.|++ . +..+..|. .|.++++.++. ..+...+...|... | +
T Consensus 309 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~~~l~~~l~~~---g-i 365 (417)
T 3g7q_A 309 PFYYQRVQQTIAIIRRYLSEERCLIHKPE-------------------GAIFLWLWFKDLPITTELLYQRLKAR---G-V 365 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTCEEECCC-------------------BSSEEEEECTTCSSCHHHHHHHHHHT---T-E
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeeCCC-------------------cceEEEEEcCCCCCCHHHHHHHHHHC---C-E
Confidence 4567788888888876 3 23444332 46689999874 22356677777653 4 5
Q ss_pred cccccC
Q 013210 379 AVSLGY 384 (447)
Q Consensus 379 ~vs~G~ 384 (447)
.+..|.
T Consensus 366 ~v~~g~ 371 (417)
T 3g7q_A 366 LMVPGH 371 (417)
T ss_dssp ECEEGG
T ss_pred EEECch
Confidence 666663
No 111
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.95 E-value=1.5e-27 Score=241.39 Aligned_cols=308 Identities=14% Similarity=0.132 Sum_probs=204.3
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHh----C--CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCC
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G--TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTL 147 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~----g--~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~ 147 (447)
+.+.+.+... +++...+.|+.. ....++++.+|+++ + .+.+++|+|+++++..+ ..++++||+|+++.|.
T Consensus 89 ~a~~~~~~~~-~~~~~~~~y~~~--~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~ 164 (449)
T 3qgu_A 89 DAMAKAAAGL-ATREGYSGYGAE--QGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPS 164 (449)
T ss_dssp HHHHHHHHGG-GGSCCCCCSTTT--TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESC
T ss_pred HHHHHHHHhh-ccccCCCCCCCC--CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCC
Confidence 5555555432 222233445432 33478999999998 3 35699999999999998 7888999999999999
Q ss_pred chhHHHHHHhhcCcccCee----------EEEeCCCCHHHHHHhhcc-CCceEEEEEcCCCCCccccC---HHHHHHHHH
Q 013210 148 YGGTHALLTHFFPRACNIT----------TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAH 213 (447)
Q Consensus 148 y~~~~~~~~~~~~~~~g~~----------~~~v~~~d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~---l~~I~~la~ 213 (447)
|+++...+.. .|.+ +..++.++.+.+...+.. +++++|++++|+||||.+.+ +++|+++|+
T Consensus 165 ~~~~~~~~~~-----~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~ 239 (449)
T 3qgu_A 165 YPVYVDTSVM-----MGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFAR 239 (449)
T ss_dssp CTHHHHHHHH-----HTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred ChhHHHHHHH-----cCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHH
Confidence 9999887742 3544 666666532222222212 57899999999999999986 778888999
Q ss_pred hcCCEEEEeCCCCCCCCC------ccC----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHH--------HHHHHhhh
Q 013210 214 DKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVN--------SMMDLHQG 275 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~------~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~--------~l~~~~~~ 275 (447)
+||+++|+|++|+.+.+. ... .++++++.|+||.+|++|.|+ ||+++++++++ .+.....
T Consensus 240 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~- 317 (449)
T 3qgu_A 240 KNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRL-GWTVVPKALKYANGEPVHADWNRVMT- 317 (449)
T ss_dssp HHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCC-EEEECCTTCBCTTSCBHHHHHHHHHH-
T ss_pred HCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcccee-EEEecCHHHHhhhhhhHHHHHHHHhh-
Confidence 999999999999655332 111 256899999999999999998 99999887664 3333332
Q ss_pred hhhhcCCCccHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
.....++.+.+.++..++.. .+++.+..+++.++++++.+.|++.++.+..|. .|.+++
T Consensus 318 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~ 378 (449)
T 3qgu_A 318 TCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGD-------------------DAPYIW 378 (449)
T ss_dssp HSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESS-------------------SSSEEE
T ss_pred cccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------------CeeEEE
Confidence 11112233333333333332 233556677889999999999998877665432 356889
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
+.+++ .....+.+.|... .| +.+..|..+.. ..++.||||+. . +++.++.+.
T Consensus 379 ~~~~~-~~~~~~~~~l~~~--~g-I~v~pg~~f~~---------------------~~~~~iRis~~-~--~~e~i~~~l 430 (449)
T 3qgu_A 379 VGFPG-KPSWDVFAEILER--CN-IVTTPGSGYGP---------------------AGEGFVRASAF-G--SRENILEAV 430 (449)
T ss_dssp EECTT-SCHHHHHHHHHHH--HC-EECEEGGGGCG---------------------GGTTEEEEECC-S--CHHHHHHHH
T ss_pred EECCC-CCHHHHHHHHHHH--CC-EEEecchHhCC---------------------CCCCeEEEEec-C--CHHHHHHHH
Confidence 99872 2245566555431 23 45555532110 12578999987 4 445555555
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|+++
T Consensus 431 ~~l~~~ 436 (449)
T 3qgu_A 431 RRFKEA 436 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 112
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.95 E-value=9e-27 Score=233.46 Aligned_cols=277 Identities=16% Similarity=0.151 Sum_probs=189.5
Q ss_pred HHHHHHHHHHh----CCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 102 LNLSRQMAALE----GTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 102 ~~l~~~ia~l~----g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.++++.+++++ +.+ .+++|+||++|+..++++++++||+|+++.|.|+++...+. ..|.++..++.+
T Consensus 83 ~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~ 157 (418)
T 3rq1_A 83 PDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICS-----DTGRTLVTYSLFD 157 (418)
T ss_dssp HHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECSBC
T ss_pred HHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHH-----HcCCEEEEEeeeC
Confidence 56777777765 566 89999999999999999999999999999999999987763 268888888752
Q ss_pred -----CHHHHHHhhcc---CCce-EEEEEcC-CCCCccccCHH---HHHHHHH------hcCCEEEEeCCCCCCCCCc--
Q 013210 174 -----DHEMVNSAIVQ---GRTK-VLYFESI-SNPTLAVANIP---ELSRLAH------DKGVTVVVDNTFSPLVLSP-- 232 (447)
Q Consensus 174 -----d~~~l~~~i~~---~~t~-lV~i~~~-~NptG~v~~l~---~I~~la~------~~gi~livD~~~~~~~~~~-- 232 (447)
|+++|++++.+ ++++ +|++++| +||||.+.+.+ +|+++|+ +||+++|+|++|..+.+..
T Consensus 158 ~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~ 237 (418)
T 3rq1_A 158 EHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDE 237 (418)
T ss_dssp TTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHH
T ss_pred CCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHH
Confidence 78999998832 1565 8889999 99999999865 4555565 8999999999996554431
Q ss_pred ----c----CCCC---eEEEeCCCccccCCCCeeEEEEEc---ChHHHHHHHHHhhhhhhhc---CCCccHHHHHHHHcc
Q 013210 233 ----A----RLGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGALMLL---GPTMNPKVAFELSER 295 (447)
Q Consensus 233 ----~----~~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~---g~~~~~~~a~~~~~~ 295 (447)
. .+.. .+++.|+||.+|++|.|+ ||+++ ++++++.+...+....... .+...+.++...+..
T Consensus 238 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 316 (418)
T 3rq1_A 238 VRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRV-GAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVAD 316 (418)
T ss_dssp HHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCC-EEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcc-eEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCC
Confidence 1 1122 388899999999999999 89887 8999988876554221111 222222233333332
Q ss_pred CC-------cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 296 IP-------HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 296 ~~-------~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
.. .+....+++.++++.+.+.|++++.++..|. .|.++++.+.+ ...+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~---~~~~~~~ 374 (418)
T 3rq1_A 317 PAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYR-------------------GGFFITIPTDS---ANAICEE 374 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC-------------------SSSEEEEECTT---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------------------ceEEEEcCCCC---HHHHHHH
Confidence 21 1123345678888899999988765543221 34467777753 3455566
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~ 439 (447)
|.. .| +.+..| .+.+|||++ . +++++.++.|.++++++
T Consensus 375 l~~---~g-i~v~~g----------------------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 375 LKK---EH-IYVIAL----------------------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHH---TT-EECEEC----------------------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred HHh---CC-EEEecC----------------------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 654 23 343333 257999998 4 33444455555555544
No 113
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.95 E-value=6.8e-27 Score=231.72 Aligned_cols=291 Identities=14% Similarity=0.179 Sum_probs=201.1
Q ss_pred CchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhH--HHHHHhhcCcccCeeEEEeCC
Q 013210 98 NPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT--HALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~--~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+...++++.++++++.+ .+++|+||++|+.+++++++++||+|+++.+.|.+. ...+ .. .|.++..++.
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~----~~-~g~~~~~~~~ 129 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIA----DR-IGARVHQMIK 129 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHH----HH-TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHH----HH-cCCceEEEeC
Confidence 356678999999999874 489999999999999999999999999998887543 2222 22 5778887764
Q ss_pred C-----CHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCC
Q 013210 173 S-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSI 244 (447)
Q Consensus 173 ~-----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~ 244 (447)
+ |+++|++++ ++ ++++|++++|+||||.+.|+++|.++|++||+++|+|++|+ ...++....++|+++.|+
T Consensus 130 ~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~ 208 (393)
T 3kgw_A 130 KPGEHYTLQEVEEGL-AQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSS 208 (393)
T ss_dssp CTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEES
T ss_pred CCCCCCCHHHHHHHH-hhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecC
Confidence 3 899999999 54 89999999999999999999999999999999999999984 334444556899999999
Q ss_pred Ccccc-CCCCeeEEEEEcChHHHHHHHHHhhhhh-------------------hhcCCCccHH--HHH-HHHccC--CcH
Q 013210 245 SKFIS-GGADIIAGAVCGPANLVNSMMDLHQGAL-------------------MLLGPTMNPK--VAF-ELSERI--PHL 299 (447)
Q Consensus 245 sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~-------------------~~~g~~~~~~--~a~-~~~~~~--~~l 299 (447)
||+++ +.| + |+++.++++++.+........ .....+.+.. .+. .++..+ ..+
T Consensus 209 sK~~~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 285 (393)
T 3kgw_A 209 QKVLNAPPG--I-SLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGL 285 (393)
T ss_dssp SSTTCCCSS--C-EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred cccccCCCc--e-eEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 99774 444 5 999999999888764321100 0001122222 221 222211 225
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013210 300 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 379 (447)
Q Consensus 300 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~ 379 (447)
....+++.++++++.+.|++++.++..+.. ....+.+++|.++.......+.+.|... +| +.
T Consensus 286 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~ 347 (393)
T 3kgw_A 286 ENCWRRHREATAHLHKHLQEMGLKFFVKDP---------------EIRLPTITTVTVPAGYNWRDIVSYVLDH--FS-IE 347 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBSSSSG---------------GGBCSSEEEEECCTTBCHHHHHHHHHHH--HC-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeccCCh---------------hhcCCeEEEEeCCCCCCHHHHHHHHHHh--CC-EE
Confidence 667788899999999999988665543220 0123457889886433355677776542 23 45
Q ss_pred ccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013210 380 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 380 vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~ 439 (447)
+..|.. + ..++.+|||+ + ...+++.++.+.++|+++
T Consensus 348 v~~g~~--------~---------------~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~ 384 (393)
T 3kgw_A 348 ISGGLG--------P---------------TEERVLRIGLLG-YNATTENVDRVAEALREA 384 (393)
T ss_dssp CBCCCG--------G---------------GTTTEEEEECCG-GGCCHHHHHHHHHHHHHH
T ss_pred EeCCcc--------c---------------CCCCEEEEEecc-cCCCHHHHHHHHHHHHHH
Confidence 555521 1 1247899998 7 543444555555554443
No 114
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.95 E-value=3.9e-27 Score=232.55 Aligned_cols=307 Identities=16% Similarity=0.187 Sum_probs=213.1
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++|+.+|+++|.+.+++|+||++|++++++++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 34 ~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~ 108 (373)
T 3frk_A 34 LGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVS-----YTGAKPIFVEPDIR 108 (373)
T ss_dssp SSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHH-----HHSCEEEEECEETT
T ss_pred CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecccc
Confidence 45778999999999999999999999999999999999 8999999999999999887763 258888888765
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeCCC-
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHSIS- 245 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S~s- 245 (447)
|+++|++++ ++++++|+ ++||+|.+.|+++|.++|+++|+++|+|++|+ +..++....+ .|+++.|++
T Consensus 109 ~~~~d~~~l~~~l-~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~ 184 (373)
T 3frk_A 109 TYNIDPSLIESAI-TEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYP 184 (373)
T ss_dssp TTEECGGGTGGGC-CTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred ccCcCHHHHHHhc-CCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcC
Confidence 889999999 77898888 67899999999999999999999999999994 3334444444 799999966
Q ss_pred -ccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhh------hc--CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 013210 246 -KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LL--GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 246 -K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~--g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~ 315 (447)
|+++++|. ||+++.+ +++.+.+...+.+... .. ...+....+......++.+....++..++++++.+
T Consensus 185 ~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (373)
T 3frk_A 185 AKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIA 262 (373)
T ss_dssp TSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987564 5888765 5677777765442110 01 11234444444444445566667777888888888
Q ss_pred HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 316 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 316 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
.|++.+ +..|..+.... .....+.+...+ ...+.+.|... | +.++.+....+-+.|...
T Consensus 263 ~l~~~~--~~~~~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~---g-I~v~~~~~~~~~~~~~~~ 321 (373)
T 3frk_A 263 GINNPN--VIIPVEADYAK------------HVWYTFVIRSEK---RDELQKYLNNN---G-IGTLIHYPIPIHLQQAYK 321 (373)
T ss_dssp HCCCTT--EECCCCCTTEE------------CCCSSEEEEESS---HHHHHHHHHHT---T-BCCBCSCSSCGGGSGGGG
T ss_pred HhccCc--eEeccCCCCCc------------eeeEEEEEEeCC---HHHHHHHHHHC---C-CCcccCcCCccccChHHH
Confidence 887766 33332211000 011234455543 45667777653 3 566655422222222111
Q ss_pred cC----CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 396 TS----SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 396 ~~----~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.. ..++..+.. ..+.||+|++ ..+++++++.+.++|++..
T Consensus 322 ~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 322 DLGFKTGNFPIAEKI----ANEILSIPIW-YGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp GGCCCTTSSHHHHHH----HHHEEEECCC-TTCCHHHHHHHHHHHHTCC
T ss_pred hcCCCCCCCHHHHHH----HhCEEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 10 011111111 1368999999 9999999999999998764
No 115
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=235.79 Aligned_cols=216 Identities=18% Similarity=0.176 Sum_probs=158.2
Q ss_pred HHHHHHHHHHh----C-----CCeEEEeCChHHHHHHHHHHhcCCCC----eEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 102 LNLSRQMAALE----G-----TEAAYCTASGMSAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 102 ~~l~~~ia~l~----g-----~~~~~~tsggt~A~~~al~~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
..+++.||+++ | .+.+++|+|+++|+.+++++++.+|| +|+++.|.|+.+...+. ..|.++.
T Consensus 132 ~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~-----~~g~~~v 206 (498)
T 3ihj_A 132 NCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVIS-----ELDAIQV 206 (498)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHH-----HTTCEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHH-----HcCCEEE
Confidence 34566666554 2 35699999999999999999998875 99999999999988773 2577777
Q ss_pred EeCCC-------CHHHHHHhhccC----CceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-
Q 013210 169 FVDIS-------DHEMVNSAIVQG----RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA- 233 (447)
Q Consensus 169 ~v~~~-------d~~~l~~~i~~~----~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~- 233 (447)
.++.+ |+++|+++++.. ++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.+...
T Consensus 207 ~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~ 286 (498)
T 3ihj_A 207 NYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDC 286 (498)
T ss_dssp EEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTC
T ss_pred EeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCC
Confidence 77654 899999998332 5899999999999999986 66799999999999999999976654321
Q ss_pred ------C----C-------CCeEEEeCCCccc-cCCCCeeEEEEE---cChHHHHHHHHHhhhhhhhcCCCccHHHHHHH
Q 013210 234 ------R----L-------GADVVVHSISKFI-SGGADIIAGAVC---GPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292 (447)
Q Consensus 234 ------~----~-------g~di~~~S~sK~~-g~~g~~igG~l~---~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~ 292 (447)
. + ...+++.|+||.+ |.+|.|+ ||++ .++++++.+...... ....+.+.+.++..+
T Consensus 287 ~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~-G~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~q~a~~~~ 363 (498)
T 3ihj_A 287 RFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG-GYMEVINLHPEIKGQLVKLLSV--RLCPPVSGQAAMDIV 363 (498)
T ss_dssp CCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCC-EEEEEESCCHHHHHHHHHHHHH--SCCCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHhcccccCceeEEEEeccccccccCcccce-EEEEEecCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHH
Confidence 0 0 1247889999999 7799998 9887 688998888766541 122223333333333
Q ss_pred Hcc-----------CCcHHHHHHHHHHHHHHHHHHHHhCC-Ceee
Q 013210 293 SER-----------IPHLGLRMKEHCHRALIFARRMKKLG-LKVL 325 (447)
Q Consensus 293 ~~~-----------~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~ 325 (447)
+.. +++.....+++.++++++.+.|++++ ..+.
T Consensus 364 l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 408 (498)
T 3ihj_A 364 VNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCN 408 (498)
T ss_dssp TCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC
T ss_pred hcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEec
Confidence 321 01123455678899999999998873 3443
No 116
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.95 E-value=2.6e-26 Score=235.50 Aligned_cols=288 Identities=13% Similarity=0.055 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..+++.+|++++ .+.+++|+||++|+.+++.+++ .+||.|+++.|.|+++...+. ..|.++..++.
T Consensus 137 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~ 211 (500)
T 3tcm_A 137 HGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIA-----LHGGALVPYYL 211 (500)
T ss_dssp HHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHH-----HTTCEEEEEEC
T ss_pred HHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHH-----HcCCEEEEEec
Confidence 567777777752 4569999999999999999998 799999999999999988773 25777777663
Q ss_pred -------CCHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc----
Q 013210 173 -------SDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA---- 233 (447)
Q Consensus 173 -------~d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~---- 233 (447)
.|+++|+++++. .++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.+...
T Consensus 212 ~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~ 291 (500)
T 3tcm_A 212 NESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFH 291 (500)
T ss_dssp BTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCC
T ss_pred ccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCC
Confidence 389999999832 17899999999999999987 56777779999999999999966544210
Q ss_pred -------CC------CCeEEEeCCCccc-cCCCCeeEEEEEc---ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC
Q 013210 234 -------RL------GADVVVHSISKFI-SGGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 296 (447)
Q Consensus 234 -------~~------g~di~~~S~sK~~-g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~ 296 (447)
.+ ...+++.|+||.+ |.+|.|+ ||++. ++++++.+...+.. ....+...+.++..++...
T Consensus 292 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~ 368 (500)
T 3tcm_A 292 SFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG-GYFEITGFSAPVREQIYKIASV--NLCSNITGQILASLVMNPP 368 (500)
T ss_dssp CHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC-EEEEEESCCTTHHHHHHHHHHT--TCCCCHHHHHHHHHHHSCC
T ss_pred cHHHHHHHhccccCCeEEEEEecCCccCCCCCccce-EEEEEeCCCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHhcCc
Confidence 11 1247888999999 8899998 88876 88888888766541 1223333344444444321
Q ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH---
Q 013210 297 -----------PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK--- 361 (447)
Q Consensus 297 -----------~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~--- 361 (447)
+++....+++.++++.+.+.|+++ ++.+..|. .|.++++.+.-++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-------------------g~~~~~~~~~lp~~~~~ 429 (500)
T 3tcm_A 369 KASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAE-------------------GAMYVFPQICLPQKAIE 429 (500)
T ss_dssp CSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC-------------------BTTEECCEECCCHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCC-------------------eEEEEeeeecCchhhHH
Confidence 223445567888999999999887 33444332 34455544431111
Q ss_pred ---------HHHH-HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHH
Q 013210 362 ---------ANRL-MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRW 429 (447)
Q Consensus 362 ---------~~~l-~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i 429 (447)
...+ ...|.. .| +.+..|..+.. ....+.+|||++ . +++++.+
T Consensus 430 ~~~~~g~~~~~~~~~~ll~~---~g-I~v~pg~~f~~--------------------~~g~~~iRis~~-~~~e~i~~~i 484 (500)
T 3tcm_A 430 AAKAANKAPDAFYALRLLES---TG-IVVVPGSGFGQ--------------------VPGTWHFRCTIL-PQEDKIPAVI 484 (500)
T ss_dssp HHHHHTSCHHHHHHHHHHHH---HC-EECEESTTTCC--------------------CTTCCBEEEESC-SCTTTHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHH---CC-EEEEeCcccCC--------------------CCCCCEEEEEEC-CCHHHHHHHH
Confidence 1122 233443 23 46555532210 012468999999 5 5678888
Q ss_pred HHHHHHHHHhhh
Q 013210 430 SQFEKALSRMQD 441 (447)
Q Consensus 430 ~~l~~al~~~~~ 441 (447)
+.|.++++++.+
T Consensus 485 ~~l~~~~~~~~~ 496 (500)
T 3tcm_A 485 SRFTVFHEAFMS 496 (500)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 117
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.95 E-value=1e-26 Score=230.87 Aligned_cols=292 Identities=13% Similarity=0.124 Sum_probs=200.3
Q ss_pred CCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-
Q 013210 97 FNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 172 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~- 172 (447)
..+...++++.+++++|.+ .+++|+||++|+.+++++++++||+|+++.++|+++. .. ..... .|.++++++.
T Consensus 50 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~ 126 (393)
T 2huf_A 50 TLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR-SA-DMATR-YGADVRVVKSK 126 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH-HH-HHHHH-TTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH-HH-HHHHH-cCCeeEEEeCC
Confidence 3456789999999999975 4889999999999999999999999999999998853 21 22222 5888888775
Q ss_pred ----CCHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCC
Q 013210 173 ----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 173 ----~d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~s 245 (447)
.|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+ ....+...+++|+++.|+|
T Consensus 127 ~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~s 205 (393)
T 2huf_A 127 VGQSLSLDEIRDAL-LIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQ 205 (393)
T ss_dssp TTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSS
T ss_pred CCCCCCHHHHHHHH-hccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCC
Confidence 3899999999 55 79999999999999999999999999999999999999983 2233334457999999999
Q ss_pred ccc-cCCCCeeEEEEEcChHHHHHHHHHh---hhhh-----------------hhcCCC-ccHHHHH-HHHccC--CcHH
Q 013210 246 KFI-SGGADIIAGAVCGPANLVNSMMDLH---QGAL-----------------MLLGPT-MNPKVAF-ELSERI--PHLG 300 (447)
Q Consensus 246 K~~-g~~g~~igG~l~~~~~~~~~l~~~~---~~~~-----------------~~~g~~-~~~~~a~-~~~~~~--~~l~ 300 (447)
|++ |++| + |+++.++++++.+.... .... ...++. .....+. .++..+ ..+.
T Consensus 206 K~l~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 282 (393)
T 2huf_A 206 KVLGAPPG--I-TPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLP 282 (393)
T ss_dssp STTCCCSS--C-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred cccccCCC--e-EEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 975 5566 3 88988999888876431 0000 011122 1222221 122222 1255
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013210 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~v 380 (447)
...+++.++++++.+.|++.+.++..|.. . ..+++++|.++.......+.+.|... +| +.+
T Consensus 283 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~L~~~--~g-i~v 343 (393)
T 2huf_A 283 ALIARHEDCAKRLYRGLQDAGFELYADPK----D------------RLSTVTTIKVPQGVDWLKAAQYAMKT--YL-VEI 343 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSCGG----G------------BCTTEEEEECCTTCCHHHHHHHHHHH--HC-EEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcc----c------------cCCcEEEEEcCCCCCHHHHHHHHHHh--CC-EEE
Confidence 66778889999999999887655443310 0 12448889886322245676666531 23 455
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHH
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~ 438 (447)
+.|.. + ..++.+|||+ + ...+++.++.+.++|++
T Consensus 344 ~~g~~--------~---------------~~~~~~Ri~~~~-~~~~~e~i~~~~~~l~~ 378 (393)
T 2huf_A 344 SGGLG--------P---------------TAGQVFRIGLMG-QNATTERVDRVLQVFQE 378 (393)
T ss_dssp BCCCG--------G---------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHH
T ss_pred ecCcc--------c---------------ccCCEEEEEccc-CcCCHHHHHHHHHHHHH
Confidence 55521 1 1257899999 6 43344444444444443
No 118
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.95 E-value=2.1e-26 Score=229.47 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHhC--------CCeEEE--eCChHHHHHHHHHHhc---CCCCeEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 101 VLNLSRQMAALEG--------TEAAYC--TASGMSAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~--tsggt~A~~~al~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
..++++.+|++++ .+.+++ |+||++|++++++.+. ++||+|+++.|+|.++...+. ..|.++
T Consensus 73 ~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~ 147 (401)
T 7aat_A 73 LADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR-----DAGLQL 147 (401)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH-----HTTCEE
T ss_pred CHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHH-----HcCCee
Confidence 3578888888874 456876 9999999999887664 889999999999999988773 257777
Q ss_pred EEeCCC-------CHHHHHHhhc--cCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---
Q 013210 168 TFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--- 232 (447)
Q Consensus 168 ~~v~~~-------d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--- 232 (447)
..++.+ |++++++.++ ++++++|++++||||||.+.+ +++|+++|++||+++|+|++|..+.+..
T Consensus 148 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 227 (401)
T 7aat_A 148 QAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINR 227 (401)
T ss_dssp EEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHH
T ss_pred EeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccc
Confidence 777642 7787776663 357899999999999998876 7788999999999999999996665432
Q ss_pred ---------cCCCCeEEEeCCCccccCCCCeeEEEEEc---ChHH----HHHHHHHhhhhhhhcCCCccHHHHHHHHcc-
Q 013210 233 ---------ARLGADVVVHSISKFISGGADIIAGAVCG---PANL----VNSMMDLHQGALMLLGPTMNPKVAFELSER- 295 (447)
Q Consensus 233 ---------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~----~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~- 295 (447)
.....++++.|+||.+|++|.|+ ||++. +++. ...+....... ....+...+..+...+..
T Consensus 228 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~Ri-G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 305 (401)
T 7aat_A 228 DAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-GAFTVICRDAEEAKRVESQLKILIRPM-YSNPPMNGARIASLILNTP 305 (401)
T ss_dssp HTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHhcCCcEEEEecCCcccccccCce-EEEEEEeCCHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHhCCH
Confidence 12256799999999999999999 88764 5553 34444333311 111121222222222221
Q ss_pred ------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 296 ------IPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 296 ------~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.+++.+..+++.++++++.+.|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 306 ELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22344556678899999999998874
No 119
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.95 E-value=1.4e-27 Score=242.77 Aligned_cols=293 Identities=12% Similarity=0.095 Sum_probs=201.5
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCC---eEEEeCCCchhHHHHHHhhcCcccCeeE-----E
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGG---HVVAARTLYGGTHALLTHFFPRACNITT-----T 168 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd---~Vi~~~~~y~~~~~~~~~~~~~~~g~~~-----~ 168 (447)
...+++++.+|+++|++ .+++|+|+++++++++.+++++|+ +|+++.++|++....+...... .|.++ .
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~-~G~~~~~~~v~ 189 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQL-HGLNIEESMRM 189 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHH-TTCCHHHHEEE
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHH-cCCcceeeeEE
Confidence 44477999999999975 599999999999999999987654 5999999999977655433332 45543 3
Q ss_pred EeCCC-----CHHHHHHhhc--cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeE
Q 013210 169 FVDIS-----DHEMVNSAIV--QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADV 239 (447)
Q Consensus 169 ~v~~~-----d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di 239 (447)
.++.+ |+++|+++++ .+++++|++++++||||.+.|+++|.++|++||+++|+|++|+ ....+..++++|+
T Consensus 190 ~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~ 269 (465)
T 3e9k_A 190 IKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDF 269 (465)
T ss_dssp ECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCE
T ss_pred EecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCE
Confidence 33332 7999999994 1689999999999999999999999999999999999999993 3344445568999
Q ss_pred EEeCCCcccc-CCCCeeEEEEEcChHHHHHHHHHhhhh---------------------hhhcCCCccHHHHH---HHHc
Q 013210 240 VVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA---------------------LMLLGPTMNPKVAF---ELSE 294 (447)
Q Consensus 240 ~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~---------------------~~~~g~~~~~~~a~---~~~~ 294 (447)
++.|+||+++ +++ .+ |+++.++++++.+.....++ .....++++..... .++.
T Consensus 270 ~~~s~~K~l~~gp~-~~-g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~ 347 (465)
T 3e9k_A 270 ACWCSYKYLNAGAG-GI-AGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLE 347 (465)
T ss_dssp EEECSSSTTCCCTT-CC-CEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHH
T ss_pred EEECcccccccCCC-ce-EEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHH
Confidence 9999999993 454 35 77888877765443211110 00001122222211 1222
Q ss_pred cCC--cHHHHHHHHHHHHHHHHHHHHhC-----------CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH
Q 013210 295 RIP--HLGLRMKEHCHRALIFARRMKKL-----------GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK 361 (447)
Q Consensus 295 ~~~--~l~~~~~~~~~~~~~l~~~L~~~-----------~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~ 361 (447)
.+. .+....++..++++++.+.|+++ +.++..|.. +. +.|++++|.++. .
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~---~~------------~~g~~~~~~~~~--~ 410 (465)
T 3e9k_A 348 IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSH---VE------------ERGCQLTITFSV--P 410 (465)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSS---GG------------GBCSCEEEEECC--T
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCC---Hh------------hcccEEEEEecC--C
Confidence 211 24556677888889999999873 345554431 11 357799999872 2
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHhh
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~~ 440 (447)
...+.+.|... | +.+..+ .++.||||+ + ..++++.++.+.++|+++.
T Consensus 411 ~~~l~~~L~~~---G-i~v~~~---------------------------~~~~iRis~~~-~~~t~edi~~~~~~l~~~l 458 (465)
T 3e9k_A 411 NKDVFQELEKR---G-VVCDKR---------------------------NPNGIRVAPVP-LYNSFHDVYKFTNLLTSIL 458 (465)
T ss_dssp TCCHHHHHHTT---T-EECEEE---------------------------TTTEEEEBCCT-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---C-EEEecC---------------------------CCCEEEEeCcc-cCCCHHHHHHHHHHHHHHH
Confidence 34566666652 3 333311 147899999 7 7888888888888888775
Q ss_pred hcC
Q 013210 441 DSG 443 (447)
Q Consensus 441 ~~~ 443 (447)
+..
T Consensus 459 ~~~ 461 (465)
T 3e9k_A 459 DSA 461 (465)
T ss_dssp TC-
T ss_pred Hhc
Confidence 543
No 120
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=4.6e-26 Score=225.96 Aligned_cols=311 Identities=17% Similarity=0.190 Sum_probs=213.4
Q ss_pred cCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 94 SRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 94 ~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
++...+...++++.+|+++|.+..+++++|++|++++++++ +++||+|+++.++|+++...+. ..|.++++++.
T Consensus 33 ~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~v~~ 107 (388)
T 1b9h_A 33 WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQ-----RLGAVTVPVDV 107 (388)
T ss_dssp BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECB
T ss_pred eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEec
Confidence 34456778999999999999988788888899999999998 8899999999999999987763 26888888875
Q ss_pred C------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCC---ccCCCCeEEEe
Q 013210 173 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS---PARLGADVVVH 242 (447)
Q Consensus 173 ~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~---~~~~g~di~~~ 242 (447)
+ |+++|++++ ++++++|+ |+||+|.+.|+++|.++|+++|+++|+|++|+. .... ...++ |+++.
T Consensus 108 ~~~~~~~d~~~l~~~i-~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~ 182 (388)
T 1b9h_A 108 DAATYNLDPEAVAAAV-TPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATF 182 (388)
T ss_dssp CTTTCCBCHHHHHHHC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEE
T ss_pred CCCcCCCCHHHHHHhc-CcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEE
Confidence 3 899999999 77888887 899999999999999999999999999999953 3322 22334 56666
Q ss_pred CCC--ccccCCCCeeEEEEEcChH-H--HHHHHHHhhhhh---------hhcCC--CccHHHHHHHHccCCcHHHHHHHH
Q 013210 243 SIS--KFISGGADIIAGAVCGPAN-L--VNSMMDLHQGAL---------MLLGP--TMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 243 S~s--K~~g~~g~~igG~l~~~~~-~--~~~l~~~~~~~~---------~~~g~--~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
|+| |++++ .+ ||+++.+++ + ++.+...+.... ...|. .+++..++.....++.+.+..+++
T Consensus 183 S~s~~K~l~g--~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~ 259 (388)
T 1b9h_A 183 SFQNGKLMTA--GE-GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVR 259 (388)
T ss_dssp ECCTTSSSCS--SS-CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHH
T ss_pred EccCCCcccC--CC-eEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 665 66654 35 499887765 5 566654332110 01122 245555444445567777788888
Q ss_pred HHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccccc
Q 013210 307 CHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 307 ~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
.++++++.+.|+++ +..+..+.....+ ..+.+++|.+++. .....+.+.|... | +.++.+
T Consensus 260 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~~ 322 (388)
T 1b9h_A 260 DERWTLLSRLLGAIDGVVPQGGDVRADR-------------NSHYMAMFRIPGLTEERRNALVDRLVEA---G-LPAFAA 322 (388)
T ss_dssp HHHHHHHHHHHHTSTTCEECCCCTTCCB-------------CCCSEEEEECTTCCHHHHHHHHHHHHHT---T-CCEEEC
T ss_pred HHHHHHHHHHhccCCCccccCCCcCCCc-------------cceEEEEEEeCCcCcccHHHHHHHHHHC---C-CCcccc
Confidence 89999999999987 4454432110001 2356999999742 3467788888753 3 566655
Q ss_pred Ccccccccccccc--CC---------CCCHHHHHhcCCCCCeEEEEeCCCCC-HHHHHHHHHHHHHHhh
Q 013210 384 YYETLMSCSGSST--SS---------ELNAEEKALAGISAGLVRMSVGYLGT-LDQRWSQFEKALSRMQ 440 (447)
Q Consensus 384 ~~~s~~~~~a~~~--~~---------~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~i~~l~~al~~~~ 440 (447)
..-+. ..+.... .. .++..... ..+.|||+++ ... ++++++.+.++|+++.
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~-~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 323 FRAIY-RTDAFWELGAPDESVDAIARRCPNTDAI----SSDCVWLHHR-VLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp CCCGG-GSHHHHHSSCCSSCHHHHHHTCHHHHHH----HHHEEEEEGG-GGGSCHHHHHHHHHHHHHHH
T ss_pred cCccc-cChHhHhcCCCcccccccccCCHHHHHH----HhCeEEecCC-CCCCCHHHHHHHHHHHHHHH
Confidence 32110 0010000 00 01111111 1357999999 888 8999999999888764
No 121
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=2.3e-26 Score=223.64 Aligned_cols=262 Identities=16% Similarity=0.165 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHHhC---C--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 100 TVLNLSRQMAALEG---T--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g---~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
...++++.+|++++ . +.+++|+|+++|++++++++ ||+|+++ |.|+++...+. ..|.++..++.+
T Consensus 57 ~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~-----~~g~~~~~v~~~~ 127 (335)
T 1uu1_A 57 PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAK-----AVGAKFLEVPLTK 127 (335)
T ss_dssp SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHH-----HHTCEEEECCCCT
T ss_pred chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHH-----HcCCeEEEeccCC
Confidence 35789999999998 4 56999999999999999887 8999999 99999887663 257888887754
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC----C-ccCCCCeEEEeCC
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL----S-PARLGADVVVHSI 244 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~----~-~~~~g~di~~~S~ 244 (447)
|+++| +++++|++++|+||||.+.|.+++.++++..| ++|+|++|+.+.. + ....+.++++.|+
T Consensus 128 ~~~~d~~~l------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~ 200 (335)
T 1uu1_A 128 DLRIPEVNV------GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTF 200 (335)
T ss_dssp TSCCCCCCC------CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEES
T ss_pred CCCCCHHHc------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecc
Confidence 33332 47899999999999999999999999999889 9999999953322 1 1223678999999
Q ss_pred CccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013210 245 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKV 324 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v 324 (447)
||++|++|.|+ ||+++++++++.+...+.. ...+.+.+.++..++...+++....+++.++++++.+.|++++..+
T Consensus 201 sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 276 (335)
T 1uu1_A 201 SKAFSLAAQRV-GYVVASEKFIDAYNRVRLP---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRI 276 (335)
T ss_dssp TTTTTCGGGCC-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred hhhcCCcccCe-EEEEeCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 99999899998 9999999998888776541 2233333444444444333456677778899999999998765443
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 325 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 325 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
.|. .|.++++.++. .+...+.+.|... | +.++.
T Consensus 277 -~~~-------------------~~~~~~~~~~~-~~~~~~~~~l~~~---g-i~v~~---------------------- 309 (335)
T 1uu1_A 277 -TDS-------------------RGNFVFVFMEK-EEKERLLEHLRTK---N-VAVRS---------------------- 309 (335)
T ss_dssp -CCC-------------------CSSEEEEECCT-HHHHHHHHHHHHH---T-EEEEE----------------------
T ss_pred -cCC-------------------CCeEEEEECCC-CCHHHHHHHHHHC---C-EEEEE----------------------
Confidence 222 35588899876 3356677777652 3 23221
Q ss_pred HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 405 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.++.+|||++ . .+.++.+.++|++
T Consensus 310 ------~~~~iRis~~-~---~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 310 ------FREGVRITIG-K---REENDMILRELEV 333 (335)
T ss_dssp ------ETTEEEEECC-C---HHHHHHHHHHHHC
T ss_pred ------CCCeEEEEeC-C---HHHHHHHHHHHHh
Confidence 1367999999 4 2346666666654
No 122
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.95 E-value=2.1e-26 Score=231.18 Aligned_cols=288 Identities=13% Similarity=0.100 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHH--HHHHHhcC--C---------CCeEEEeCCCchhHHHHHHhhcCcccCe
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAIS--SVLMQLCS--S---------GGHVVAARTLYGGTHALLTHFFPRACNI 165 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~--~al~~l~~--~---------gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 165 (447)
..++++.+|++++++ .+++|+|++++++ +++++++. + ||+|+++.|.|+++...+. ..|.
T Consensus 72 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~ 146 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ-----TLGF 146 (423)
T ss_dssp CHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH-----HHTC
T ss_pred hHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHH-----HcCC
Confidence 468999999999864 6999999999998 88888877 7 5999999999999987773 2577
Q ss_pred eEEEeCCC----CHHHHHHhhc-cCCceEEEEE-cCCCCCccccCHH---HHHHHH-HhcCCEEEEeCCCCCCCCCc---
Q 013210 166 TTTFVDIS----DHEMVNSAIV-QGRTKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNTFSPLVLSP--- 232 (447)
Q Consensus 166 ~~~~v~~~----d~~~l~~~i~-~~~t~lV~i~-~~~NptG~v~~l~---~I~~la-~~~gi~livD~~~~~~~~~~--- 232 (447)
++..++.+ |+++|+++++ ++++++|+++ +|+||||.+++.+ +|+++| ++||+++|+|++|..+.+..
T Consensus 147 ~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~ 226 (423)
T 3ez1_A 147 ELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDR 226 (423)
T ss_dssp EEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSC
T ss_pred EEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCC
Confidence 77776653 8999999995 4689999865 8999999999876 888888 89999999999996322111
Q ss_pred -------------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CC-
Q 013210 233 -------------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IP- 297 (447)
Q Consensus 233 -------------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~- 297 (447)
...+.++++.|+||+ +++|.|+ ||++.++++++.+...+... ....+.+.+.++...+.. ..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~ 303 (423)
T 3ez1_A 227 AEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGL-GFVASSEDNIRWLSKYLGAQ-SIGPNKVEQARHVKFLTEYPGG 303 (423)
T ss_dssp CCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSC-EEEEECHHHHHHHHHHHHHS-CSCCCHHHHHHHHHHHHHSTTH
T ss_pred CCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcce-EEEEeCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHHhccch
Confidence 123678999999999 5679998 99999999999888766521 122333444444444444 22
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHHh----CC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 298 ---HLGLRMKEHCHRALIFARRMKK----LG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 298 ---~l~~~~~~~~~~~~~l~~~L~~----~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
++....+.+.++++.+.+.|.+ .+ ..+..|. .|.++++.++.. ....+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~ 363 (423)
T 3ez1_A 304 LEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK-------------------GGYFISLDTAEP-VADRVVKL 363 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS-------------------BSSCEEEEESSS-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC-------------------ccEEEEEECCCC-cHHHHHHH
Confidence 2333344456666666666654 44 2443332 466899999743 24566666
Q ss_pred hhcccccccccccc-cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013210 369 LQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM 439 (447)
Q Consensus 369 l~~~~~~g~~~vs~-G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~ 439 (447)
|.. .| +.+.. |..+.. . .+..++.||||++ .. ++++.++.|.++++++
T Consensus 364 l~~---~g-v~v~~~g~~~~~----~--------------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 364 AEA---AG-VSLTPAGATYPA----G--------------QDPHNRNLRLAPT-RPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp HHH---TT-EECCCTTTTSST----T--------------CCSSSCEEEECCS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH---CC-cEEecCcccccC----C--------------CCCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 665 34 45554 322100 0 0113588999999 64 3344455555555544
No 123
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.95 E-value=2.4e-26 Score=228.67 Aligned_cols=291 Identities=13% Similarity=0.151 Sum_probs=198.9
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-------CCCCeEEEeCCCchhHHHHHHhh-----
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC-------SSGGHVVAARTLYGGTHALLTHF----- 158 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~-------~~gd~Vi~~~~~y~~~~~~~~~~----- 158 (447)
|.++++.++..+++++++++++|.+.++||+||++|+..+++.+. .++++|++..+.|++........
T Consensus 70 ~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 149 (395)
T 3nx3_A 70 HTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEK 149 (395)
T ss_dssp CCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHH
T ss_pred ccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcc
Confidence 444556678889999999999999999999999999999998765 34789999999998765333111
Q ss_pred ----cCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013210 159 ----FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL 230 (447)
Q Consensus 159 ----~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~ 230 (447)
... .+..+..++.+|+++|++++ ++++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++..
T Consensus 150 ~~~~~~~-~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~ 227 (395)
T 3nx3_A 150 YQKPFKP-LISGVKFAKYNDISSVEKLV-NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR 227 (395)
T ss_dssp HHGGGCS-CCSCEEEECTTCHHHHHTTC-CTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred cccccCC-CCCCcEEeCCCCHHHHHHhc-cCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence 111 34567788888999999999 788999999999999999987 99999999999999999999965532
Q ss_pred C-----cc--CCCCeEEEeCCCccccCCCCeeEEEEEcChHH-HHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHH
Q 013210 231 S-----PA--RLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302 (447)
Q Consensus 231 ~-----~~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~ 302 (447)
. .. ....|++ |+||.+++ |.++ |++++++++ ++.+..... .....++.+.+.++..++..++. ...
T Consensus 228 ~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~aa~aal~~~~~-~~~ 301 (395)
T 3nx3_A 228 SGKFFAYEHAQILPDIM--TSAKALGC-GLSV-GAFVINQKVASNSLEAGDH-GSTYGGNPLVCAGVNAVFEIFKE-EKI 301 (395)
T ss_dssp TSSSSGGGGGTCCCSEE--EECGGGTT-TSCC-EEEEECHHHHHHHSCTTCC-SSCBSCCHHHHHHHHHHHHHHHH-TTH
T ss_pred CCcchhHHhcCCCCCEE--EecccccC-CCce-EEEEEchhhhhhhcCCccc-CCCCCCCHHHHHHHHHHHHHHHh-hHH
Confidence 1 11 2234554 57899986 8888 899999988 776654322 11122333333333333332111 123
Q ss_pred HHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013210 303 MKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~ 378 (447)
.++..++.+++.+.|++ ++.....+ +.|.++++.+++......+.+.|... | +
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~l~~~---G-i 358 (395)
T 3nx3_A 302 LENVNKLTPYLEQSLDELINEFDFCKKRK-------------------GLGFMQGLSLDKSVKVAKVIQKCQEN---A-L 358 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEECTTSCHHHHHHHHHHT---T-E
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------eEEEEEEEEeCCcchHHHHHHHHHHC---C-C
Confidence 34444555555555543 33211111 35679999998543456777777653 3 3
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.++.+ +++.||||++ ...+++.++.+.++|+++-
T Consensus 359 ~v~~~---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 359 LLISC---------------------------GENDLRFLPP-LILQKEHIDEMSEKLRKAL 392 (395)
T ss_dssp ECEEE---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred EEecC---------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 33322 1478999998 7777777777777776653
No 124
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.95 E-value=5.7e-27 Score=242.04 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=128.3
Q ss_pred HHHHHHHHHHh----CC-------CeEEEeCChHHHHHHHHHH-----hcCCCCeEEEeCCCchhHHHHHHhhcCcccCe
Q 013210 102 LNLSRQMAALE----GT-------EAAYCTASGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNI 165 (447)
Q Consensus 102 ~~l~~~ia~l~----g~-------~~~~~tsggt~A~~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 165 (447)
.++++.+|+++ +. +.+++|+||++|+.+++.+ ++++||+|+++.|+|+++...+ +..|.
T Consensus 141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~-----~~~g~ 215 (533)
T 3f6t_A 141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIP-----ELKDY 215 (533)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSG-----GGGGS
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHH-----HHcCC
Confidence 46777777765 33 5799999999999999998 7889999999999999887655 22577
Q ss_pred eEEEeCCC---------CHHHHHHhhccCCceEEEEEcCCCCCccccCHH---HHHHHHH-hcCCEEEEeCCCCCCCCCc
Q 013210 166 TTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 166 ~~~~v~~~---------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~---~I~~la~-~~gi~livD~~~~~~~~~~ 232 (447)
.+..++.+ |+++|++++ ++++++|++++|+||||.+++.+ +|+++|+ +||+++|+|++|+.+....
T Consensus 216 ~~~~v~~~~~~~~~~~~d~~~l~~~l-~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~ 294 (533)
T 3f6t_A 216 ELVEVDLHSYEKNDWEIEPNEIEKLK-DPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF 294 (533)
T ss_dssp EEEEECCCEETTTTSEECHHHHHHHS-CTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC
T ss_pred eEEEEEecCCcccCCCCCHHHHHHHh-CCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc
Confidence 77777653 899999999 78999999999999999999866 7888888 6899999999997665432
Q ss_pred cC-----CCCeEEEeCCCccccCCCCeeEEEEEcChH
Q 013210 233 AR-----LGADVVVHSISKFISGGADIIAGAVCGPAN 264 (447)
Q Consensus 233 ~~-----~g~di~~~S~sK~~g~~g~~igG~l~~~~~ 264 (447)
.. .+.++++.|+||.+|++|.|+ ||++++++
T Consensus 295 ~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~~~~ 330 (533)
T 3f6t_A 295 KSIYSVVPYNTMLVYSYSKLFGCTGWRL-GVIALNEK 330 (533)
T ss_dssp CCHHHHSGGGEEEEEESHHHHTCGGGCE-EEEEEESS
T ss_pred cCHhhcCCCCEEEEecCcccCCCcccce-EEEEECcH
Confidence 21 256799999999999999999 88887654
No 125
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.95 E-value=3.7e-27 Score=235.10 Aligned_cols=291 Identities=15% Similarity=0.152 Sum_probs=200.5
Q ss_pred cCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcCc----
Q 013210 94 SRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 94 ~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
..+..+...++++.+++++|.+.+++|+||++|+.++++.++. +| |+|++..+.|+++..........
T Consensus 76 ~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~ 155 (406)
T 4adb_A 76 NGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYS 155 (406)
T ss_dssp TTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGT
T ss_pred CCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCcccc
Confidence 3445677899999999999999999999999999999998764 55 89999999999875444222110
Q ss_pred ----ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc-----CHHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 162 ----ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA-----NIPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 162 ----~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~-----~l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
..+..+..++.+|+++|++++ ++++++|+++ |+||+|.+. ++++|.++|++||+++|+|++|+++....
T Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g 233 (406)
T 4adb_A 156 QDFAPLPADIRHAAYNDINSASALI-DDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG 233 (406)
T ss_dssp GGGCSCCSSEEEECTTCHHHHHTTC-STTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred ccCCCCCCCceEeCCCcHHHHHHHh-cCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 012466777888999999999 7889999999 899999765 58999999999999999999996553321
Q ss_pred -------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 233 -------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 233 -------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
.....|++ |+||.++ +|.|+ |++++++++++.+...... ....++.+.+.++...+..++. ....++
T Consensus 234 ~~~~~~~~~~~~d~~--t~sK~~~-~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 307 (406)
T 4adb_A 234 ELYAYMHYGVTPDLL--TTAKALG-GGFPV-GALLATEECARVMTVGTHG-TTYGGNPLASAVAGKVLELINT-PEMLNG 307 (406)
T ss_dssp SSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECHHHHHTCCTTSSC-CSSTTCHHHHHHHHHHHHHHSS-HHHHHH
T ss_pred hhHHHHhcCCCCCEE--Eechhhc-CCCCe-EEEEEcHHHHhhhccCCcC-CCCCCCHHHHHHHHHHHHHHHh-cCHHHH
Confidence 12345666 5799999 78898 9999999988777644331 1122333333333333333332 456677
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--HHHHHHHHhhccccccccccccc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+.++++++.+.|++.+... +... ...+.|.++++.++... ....+.+.|... | +.+..+
T Consensus 308 ~~~~~~~l~~~l~~~~~~~--~~~~-------------~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~ 368 (406)
T 4adb_A 308 VKQRHDWFVERLNTINHRY--GLFS-------------EVRGLGLLIGCVLNADYAGQAKQISQEAAKA---G-VMVLIA 368 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CCEE-------------EEEEETTEEEEEECTTTTTCHHHHHHHHHHT---T-EECEES
T ss_pred HHHHHHHHHHHHHHHHHhC--CCce-------------EEEEEEEEEEEEEeCCcHHHHHHHHHHHHHC---C-cEEeec
Confidence 8888888888887653211 0000 00135779999998531 356777777752 3 333322
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+||+++ ...+++.++.+.++|+++
T Consensus 369 ---------------------------~~~~iRi~~~-~~~~~e~i~~~~~~l~~~ 396 (406)
T 4adb_A 369 ---------------------------GGNVVRFAPA-LNVSEEEVTTGLDRFAAA 396 (406)
T ss_dssp ---------------------------STTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1478999888 655555555555555443
No 126
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.95 E-value=1.1e-26 Score=226.54 Aligned_cols=285 Identities=17% Similarity=0.145 Sum_probs=195.2
Q ss_pred chHHHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 99 PTVLNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
....++++.+++++|.+ .+++|+||++|+.++++++++ |+|+++.++|+++ ... ..... .|.++..++.+
T Consensus 33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~~~-~~~~~-~g~~~~~v~~~~ 107 (353)
T 2yrr_A 33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQ-RVA-EMAAL-HGLDPEVLDFPP 107 (353)
T ss_dssp HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHH-HHH-HHHHH-TTCCEEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchH-HHH-HHHHH-cCCceEEEeCCC
Confidence 44789999999999973 499999999999999998876 8999999999986 222 22222 57888887753
Q ss_pred ----CHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCc
Q 013210 174 ----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISK 246 (447)
Q Consensus 174 ----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK 246 (447)
|+++|++++ ++ ++++|++++++||||.+.|+++|.++|++||+++|+|++|+. ...+...+++|+++.|+||
T Consensus 108 ~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K 186 (353)
T 2yrr_A 108 GEPVDPEAVARAL-KRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQK 186 (353)
T ss_dssp TSCCCHHHHHHHH-HHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTS
T ss_pred CCCCCHHHHHHHH-HhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcc
Confidence 899999999 55 799999999999999999999999999999999999999932 2223333478999999999
Q ss_pred ccc-CCCCeeEEEEEcChHHHHHHHH-------------HhhhhhhhcCCCccHH--HH-HHHHccC--CcHHHHHHHHH
Q 013210 247 FIS-GGADIIAGAVCGPANLVNSMMD-------------LHQGALMLLGPTMNPK--VA-FELSERI--PHLGLRMKEHC 307 (447)
Q Consensus 247 ~~g-~~g~~igG~l~~~~~~~~~l~~-------------~~~~~~~~~g~~~~~~--~a-~~~~~~~--~~l~~~~~~~~ 307 (447)
+++ ++| + |+++.++++++.+.. ... .....+ +.+.. .+ ..++..+ ..+....+++.
T Consensus 187 ~~~~~~g--~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 261 (353)
T 2yrr_A 187 CLSAPPG--L-APIAASLEARKAFTGKRGWYLDLARVAEHWE-RGGYHH-TTPVLLHYALLEALDLVLEEGVAARERRAR 261 (353)
T ss_dssp TTCCCSS--C-EEEEECHHHHHHCCCCSCSTTCHHHHHHHHT-TCCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cccCCCc--e-EEEEECHHHHHHhccCCCccccHHHHhhhhh-cCCCCC-CCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 654 455 4 999999988766531 000 011222 22222 21 1222221 12455677888
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccc
Q 013210 308 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++++++.+.|++.+.++..+. . ..+.+++|.++.......+.+.|... | +.+..|..
T Consensus 262 ~~~~~l~~~L~~~g~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~-- 318 (353)
T 2yrr_A 262 EVYAWVLEELKARGFRPYPKA--S---------------PLPTVLVVRPPEGVDADRLVRALYAE---G-VAVAGGIG-- 318 (353)
T ss_dssp HHHHHHHHHHHHTTCEESCSS--S---------------BCTTEEEEECCTTCCHHHHHHHHHHT---T-EECEECCG--
T ss_pred HHHHHHHHHHHHCCCccccCc--c---------------CCCeEEEEECCCCCCHHHHHHHHHHC---C-EEEeCCcc--
Confidence 999999999988765554321 0 13457889986322345677777653 3 45555521
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH-HHHHHHHHh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS-QFEKALSRM 439 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~-~l~~al~~~ 439 (447)
+ ..++.+|||++ ...+++.++ .+.++|+++
T Consensus 319 ------~---------------~~~~~iRi~~~-~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 319 ------P---------------TRGQVLRLGLM-GEGARREAYQAFLKALDRA 349 (353)
T ss_dssp ------G---------------GTTTCEEEECS-GGGSCHHHHHHHHHHHHHH
T ss_pred ------c---------------cCCCeEEEecC-ccCCHHHHHHHHHHHHHHH
Confidence 1 02468999995 433333344 666666554
No 127
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=2.2e-26 Score=225.42 Aligned_cols=284 Identities=9% Similarity=0.032 Sum_probs=199.3
Q ss_pred chHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
+..+++++.+++++|. +.+++|+||++|++++++++.++ +.+++..+.|..... ..... .|.+++.++.+
T Consensus 43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~---~~~~~-~g~~~~~v~~~~~ 117 (362)
T 3ffr_A 43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFY---EFAGE-LGREAYKEEAAFG 117 (362)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHH---HHHHH-TTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHH---HHHHH-hCCCeEEEecCCC
Confidence 5678899999999986 34999999999999999999877 444444444441111 12223 58888887754
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc-CCEEEEeCCCCCCC--CCccCCCCeEEEeCCCcc
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTFSPLV--LSPARLGADVVVHSISKF 247 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~-gi~livD~~~~~~~--~~~~~~g~di~~~S~sK~ 247 (447)
|+++|+ + +++|++|++++|+||||.+.|+++|.++|++| |+++|+|++|+... .+.. .+|+++.|+||+
T Consensus 118 ~~~d~~~l~--~-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~--~~d~~~~s~~K~ 192 (362)
T 3ffr_A 118 KGFYPADIT--V-PADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWT--KIDSVFFSVQKC 192 (362)
T ss_dssp CCCCGGGCC--C-CTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTT--SCSEEEEETTST
T ss_pred CCCCHHHHh--c-cCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChh--HCcEEEEecccc
Confidence 778887 5 78899999999999999999999999999999 99999999984322 2222 289999999999
Q ss_pred cc-CCCCeeEEEEEcChHHHHHHHHHhhhhh------------------hhcCCCc-cHH-HHHHHHccC--CcHHHHHH
Q 013210 248 IS-GGADIIAGAVCGPANLVNSMMDLHQGAL------------------MLLGPTM-NPK-VAFELSERI--PHLGLRMK 304 (447)
Q Consensus 248 ~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~------------------~~~g~~~-~~~-~a~~~~~~~--~~l~~~~~ 304 (447)
++ ++| + |+++.++++++.+.....+.. ...++.. ... ++..++..+ ..+..+.+
T Consensus 193 ~~~~~G--~-g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 269 (362)
T 3ffr_A 193 FGLPAG--L-GVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRK 269 (362)
T ss_dssp TCCCSC--C-EEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCCCc--e-EEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHH
Confidence 99 666 3 788888888887766543100 0012111 111 121222211 12566778
Q ss_pred HHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 305 EHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
++.++++++.+.|+++ +.++..|. +. ...+.+++|.+++ +...+.+.|... | +.++.|
T Consensus 270 ~~~~~~~~l~~~L~~~~g~~~~~~~-~~--------------~~~~~~~~~~~~~--~~~~~~~~l~~~---g-i~~~~g 328 (362)
T 3ffr_A 270 QTEEKAALINTYIESSKVFSFGVED-AK--------------LRSMTTIVANTTM--LPGEINKILEPF---D-MAVGAG 328 (362)
T ss_dssp HHHHHHHHHHHHHHHCSSEEESSSC-GG--------------GBCSSEEEEEESS--CHHHHHHHHGGG---T-EEEEEC
T ss_pred HHHHHHHHHHHHHHHccCceeccCC-hh--------------hcCCceEEEecCC--CHHHHHHHHHHC---C-eEEecC
Confidence 8899999999999998 44554322 00 0235689999986 467788888763 3 455544
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.. + ..++.||||++ ..++++.++.+.++|+++.
T Consensus 329 ~~--------~---------------~~~~~iRis~~-~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 329 YG--------S---------------KKETQIRIANF-PAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SG--------G---------------GTTTEEEEECC-TTSCHHHHHHHHHHHHHHT
T ss_pred cc--------c---------------cCCCEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 11 1 12478999999 8889999999999988753
No 128
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.95 E-value=1.2e-26 Score=228.87 Aligned_cols=312 Identities=16% Similarity=0.217 Sum_probs=214.5
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++++.+|++++.+.+++|+||++|+.++++++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~ 110 (374)
T 3uwc_A 36 LGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIV-----QAGATPVLVDSENG 110 (374)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTT
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCC
Confidence 35678999999999999999999999999999999999 8999999999999999987763 268889888875
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCCC--CeEEEeCCC--
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLG--ADVVVHSIS-- 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~g--~di~~~S~s-- 245 (447)
|++++++++ ++++++|+ |+||+|.+.|+++|.++|+++|+++|+|++|+. ..++....+ .|+++.|+|
T Consensus 111 ~~~d~~~l~~~~-~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~ 186 (374)
T 3uwc_A 111 YVIDPEKIEAAI-TDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPL 186 (374)
T ss_dssp SSBCGGGTGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSS
T ss_pred CCcCHHHHHHhC-CCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCC
Confidence 899999998 67888888 899999999999999999999999999999943 233333333 799999977
Q ss_pred ccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh------hcC--CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 246 K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
|+++++|. ||+++. ++++.+.+...+..... ..+ ..+....+......++.+....++..++++++.+.
T Consensus 187 K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (374)
T 3uwc_A 187 KNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQS 264 (374)
T ss_dssp SSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHH
T ss_pred CcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997664 488776 45677777665431100 011 12344444444445566777777888888899999
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccccc
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
|++.+..+..+..+.... ..-..+.+...+ ...+.+.|... | +.++.|....+...|....
T Consensus 265 l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~---g-i~v~~~~~~~~~~~~~~~~ 325 (374)
T 3uwc_A 265 FVDLSEFIDVPVRREGVY------------HVFHIYVLRVKY---RDQLFQYLKDN---G-IEVKIHYPIAMHLQPAAKS 325 (374)
T ss_dssp TGGGTTTEECCCCCTTEE------------CCCSSEEEEETT---HHHHHHHHHHT---T-BCCBCSCSSCGGGSGGGGG
T ss_pred hccCCCeEEeccCCCCCc------------eeeEEEEEEcCC---HHHHHHHHHHC---C-CccccCCCCccccChhhhh
Confidence 987652022222111000 000134444443 45666777653 3 5666664222211121110
Q ss_pred ----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcC
Q 013210 397 ----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSG 443 (447)
Q Consensus 397 ----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~ 443 (447)
....+.... ...+.|||+++ ...++++++.+.++|+++.+..
T Consensus 326 ~~~~~~~~~~~~~----~~~~~lrl~~~-~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 326 LGYQQGDFPMAEK----HGEAVITLPAH-PYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp GCCCTTSCHHHHH----HHHHEEEECCC-TTSCHHHHHHHHHHHHHHHHTT
T ss_pred cCCccCCCccHHH----HHhCEEEccCC-CCCCHHHHHHHHHHHHHHHHhh
Confidence 001111111 11367999999 9999999999999998876543
No 129
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.95 E-value=1.2e-26 Score=229.64 Aligned_cols=309 Identities=14% Similarity=0.095 Sum_probs=202.2
Q ss_pred CCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCc
Q 013210 83 ELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR 161 (447)
Q Consensus 83 ~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~ 161 (447)
.++|++..|. +......++++++.+++++|++. ++||+|||+|+++++.. +.+||+|+++.+.|++.... .....
T Consensus 20 ~~~~~~~~h~-~~~~~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~--~~~~~ 95 (379)
T 3ke3_A 20 VYTDRALNHM-SKAFQEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWT--QILEK 95 (379)
T ss_dssp SCCTTSCCTT-SHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHH--HHHHH
T ss_pred hccCCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHH--HHHHH
Confidence 3667765454 44445778899999999999865 78889999999998854 57899999999999875321 11111
Q ss_pred ccC--eeEEEeC--------------CCCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEe
Q 013210 162 ACN--ITTTFVD--------------ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 162 ~~g--~~~~~v~--------------~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD 222 (447)
.| .++.+++ ..|+++++++++++++++|++.+++|++|.+.| +++|.++|++||+++|+|
T Consensus 96 -~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D 174 (379)
T 3ke3_A 96 -GKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVID 174 (379)
T ss_dssp -HCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -hCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 23 3555543 248999999994457999999999999999999 999999999999999999
Q ss_pred CCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh-h-----------------hhhcCCC
Q 013210 223 NTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-A-----------------LMLLGPT 283 (447)
Q Consensus 223 ~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-~-----------------~~~~g~~ 283 (447)
++++ ...++...+++|+++.|+||+++++.. + |+++.++++++.+...... . ......+
T Consensus 175 ~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~g-~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t 252 (379)
T 3ke3_A 175 CIASGCVWLDMKELGIDVLISAPQKGWSSTPC-A-GLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHAT 252 (379)
T ss_dssp CTTCTTCCCCHHHHTCSEEEECTTTTTCSCCC-E-EEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSC
T ss_pred ecccCCccccccccCCCEEEecchhhcCCCCc-e-EEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCC
Confidence 9995 333444456899999999999876543 4 9999999988777531100 0 0001112
Q ss_pred ccHH--HHH-HHHccCC--cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 284 MNPK--VAF-ELSERIP--HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 284 ~~~~--~a~-~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
++.. .+. .++..+. .+....+++.++++++.+.|+++++++..+.... .+.+..+.+++
T Consensus 253 ~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~----------------~~~i~~~~~~~ 316 (379)
T 3ke3_A 253 MPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFE----------------APGVVVSYTER 316 (379)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCB----------------CSSEEEEECSC
T ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCcccc----------------CceEEEEccCC
Confidence 2222 121 2222221 2456667788999999999999877654432111 22355566655
Q ss_pred HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 359 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 359 ~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+ . .+...|.. .| +.++.|..+ .+.. ....+.+|||+. ..+++++|+.+.++|++
T Consensus 317 ~~-~-~~~~~L~~---~G-i~v~~g~~~------~~~~------------~~~~~~lRis~~-~~~t~~di~~~~~~l~~ 371 (379)
T 3ke3_A 317 DD-M-HKGSAFAE---AG-LQIAAGVPL------KVGE------------PDNFKTFRLGLF-GLDKLTDIDGTVERFEK 371 (379)
T ss_dssp HH-H-HSSHHHHH---TT-CCCEECCCC------SSCC------------CTTCCEEEEECC-SHHHHTCHHHHHHHHHH
T ss_pred cc-h-HHHHHHHH---CC-eEEeCCccc------cccc------------cCcCCEEEEeCC-cCCCHHHHHHHHHHHHH
Confidence 43 2 22445554 23 466666321 1110 012578999998 65555555555555544
Q ss_pred h
Q 013210 439 M 439 (447)
Q Consensus 439 ~ 439 (447)
+
T Consensus 372 ~ 372 (379)
T 3ke3_A 372 A 372 (379)
T ss_dssp H
T ss_pred H
Confidence 3
No 130
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.95 E-value=9.9e-26 Score=222.15 Aligned_cols=331 Identities=15% Similarity=0.162 Sum_probs=217.7
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh---cCCCCe
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL---CSSGGH 140 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l---~~~gd~ 140 (447)
+.+++.+.+ +.+.+.+...+.+ ..+...++++.+|+++|.+.+++|+||++|+.++++++ +++||+
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~~~----------~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~ 76 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQLT----------QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNE 76 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSCCS----------SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCE
T ss_pred CCCCCCHHHHHHHHHHHHcCccc----------CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCE
Confidence 344444444 6666666432211 14567899999999999999999999999999999998 889999
Q ss_pred EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc
Q 013210 141 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 215 (447)
Q Consensus 141 Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~ 215 (447)
|+++.++|+++...+. ..|.++.+++.+ |+++|++++ ++++++|+++++ +|.+.|+++|.++|+++
T Consensus 77 Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~ 147 (375)
T 2fnu_A 77 IITTPISFVATANMLL-----ESGYTPVFAGIKNDGNIDELALEKLI-NERTKAIVSVDY---AGKSVEVESVQKLCKKH 147 (375)
T ss_dssp EEECSSSCTHHHHHHH-----HTTCEEEECCBCTTSSBCGGGSGGGC-CTTEEEEEEECG---GGCCCCHHHHHHHHHHH
T ss_pred EEECCCccHhHHHHHH-----HCCCEEEEeccCCCCCCCHHHHHhhc-CcCceEEEEeCC---cCCccCHHHHHHHHHHc
Confidence 9999999999988773 268888888764 788999988 678999887766 99999999999999999
Q ss_pred CCEEEEeCCCCCCCC-CccCCC--CeEEEeCCC--ccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhh----------hh
Q 013210 216 GVTVVVDNTFSPLVL-SPARLG--ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMDLHQGAL----------ML 279 (447)
Q Consensus 216 gi~livD~~~~~~~~-~~~~~g--~di~~~S~s--K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~----------~~ 279 (447)
|+++|+|++|+.... ....++ .|+++.|+| |++++ | +||+++.+ +++++.+........ ..
T Consensus 148 ~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2fnu_A 148 SLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKS 224 (375)
T ss_dssp TCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESS
T ss_pred CCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCcccccccccccc
Confidence 999999999943221 111121 267777777 99986 6 54555544 778888776543211 00
Q ss_pred cC--CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 280 LG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 280 ~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
.+ ..+.+..+......++.+....++..++++++.+.|++++ .++..+.... .+.+.++++.+
T Consensus 225 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 290 (375)
T 2fnu_A 225 IGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKD--------------KSSNHLYPILM 290 (375)
T ss_dssp CCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSS--------------CCCCSCEEEEE
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCC--------------CcceEEEEEEe
Confidence 11 1344444444443456677788888999999999998874 3443321000 01234667777
Q ss_pred CCH-H-HHHHHHHHhhcccccccccccccCccccccccccc---cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 357 ETE-E-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS---TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 357 ~~~-~-~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~---~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
+.. . ....+.+.|... | +.++.+.. .....++.. .....+.... ...+.||||++ ...+++.++.
T Consensus 291 ~~~~~~~~~~l~~~L~~~---g-i~v~~~~~-p~~~~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~-~~~t~~~i~~ 360 (375)
T 2fnu_A 291 HQKFFTCKKLILESLHKR---G-ILAQVHYK-PIYQYQLYQQLFNTAPLKSAED----FYHAEISLPCH-ANLNLESVQN 360 (375)
T ss_dssp CGGGGGGHHHHHHHHHHT---T-EECBCCCC-CGGGSHHHHHHHCCCCCHHHHH----HHHHEEEECCC-TTCCHHHHHH
T ss_pred CccccchHHHHHHHHHHC---C-CCcccccc-ccccchhhhcCCCccCChHHHH----HHhCEEEecCC-CCCCHHHHHH
Confidence 632 1 356777777653 3 44442210 000000000 0000110000 11367999999 8888888888
Q ss_pred HHHHHHHhhh
Q 013210 432 FEKALSRMQD 441 (447)
Q Consensus 432 l~~al~~~~~ 441 (447)
+.++|+++.+
T Consensus 361 ~~~~l~~~~~ 370 (375)
T 2fnu_A 361 IAHSVLKTFE 370 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877643
No 131
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.95 E-value=6.7e-26 Score=227.60 Aligned_cols=286 Identities=12% Similarity=0.086 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHH--HHHHHHhcCC------------CCeEEEeCCCchhHHHHHHhhcCcccC
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAI--SSVLMQLCSS------------GGHVVAARTLYGGTHALLTHFFPRACN 164 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~--~~al~~l~~~------------gd~Vi~~~~~y~~~~~~~~~~~~~~~g 164 (447)
..++++.+|++++.+ .+++|+|+++++ .+++..+..+ +|+|+++.|+|+++...+. ..|
T Consensus 78 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~-----~~g 152 (422)
T 3d6k_A 78 IADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE-----HFG 152 (422)
T ss_dssp CHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-----HHT
T ss_pred CHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHH-----HcC
Confidence 478999999999864 599999999997 5666777655 3479999999999987773 257
Q ss_pred eeEEEeCCC----CHHHHHHhhccCCceEEE-EEcCCCCCccccCHH---HHHHHHH-hcCCEEEEeCCCCC--CCCC--
Q 013210 165 ITTTFVDIS----DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSP--LVLS-- 231 (447)
Q Consensus 165 ~~~~~v~~~----d~~~l~~~i~~~~t~lV~-i~~~~NptG~v~~l~---~I~~la~-~~gi~livD~~~~~--~~~~-- 231 (447)
.++..++.+ |+++|+++++..++++|+ +++|+||||.+++.+ +|+++|+ +||+++|+|++|.. +...
T Consensus 153 ~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~ 232 (422)
T 3d6k_A 153 FEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFP 232 (422)
T ss_dssp CEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCC
T ss_pred CEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCC
Confidence 777776653 899999999334789988 689999999999876 7777787 89999999999953 4321
Q ss_pred ---cc--------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC----
Q 013210 232 ---PA--------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---- 296 (447)
Q Consensus 232 ---~~--------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---- 296 (447)
+. ..+.++++.|+||+ +++|.|+ ||+++++++++.+....... ....+.+.+.++..++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~Glri-G~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~ 309 (422)
T 3d6k_A 233 IVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGV-SFFASSKENIEWYASHANVR-GIGPNKLNQLAHAQFFGDVAGLK 309 (422)
T ss_dssp CCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSC-EEEECCHHHHHHHHHHHHHH-CSCCCHHHHHHHHHHHCSHHHHH
T ss_pred CCcChhhHhhccCCCCcEEEEcChhhh-cCcccce-EEEEeCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHhCcchHH
Confidence 11 23678999999999 6689998 99999999998887765521 1223334444444444431
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHh----CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 297 PHLGLRMKEHCHRALIFARRMKK----LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~----~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
+++....+.+.++++.+.+.|++ .+. .+..|. .|.++++.++.. ....+...|..
T Consensus 310 ~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~l~~ 369 (422)
T 3d6k_A 310 AHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPT-------------------GGYFISVDVVPG-TASRVVELAKE 369 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCS-------------------BSSCEEEEESTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCC-------------------cceEEEEECCCC-CHHHHHHHHHH
Confidence 22334445567777777777765 232 333332 466899999743 23455566654
Q ss_pred ccccccccccccC-ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 372 YAQFGFMAVSLGY-YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 372 ~~~~g~~~vs~G~-~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.| +.+..|+ .+.. . . ...++.+|||++ . .+++.++.+.++|++
T Consensus 370 ---~g-V~v~~~g~~f~~----~-~-------------~~~~~~iRis~~-~-~~~e~i~~~~~~l~~ 413 (422)
T 3d6k_A 370 ---AG-IALTGAGSSFPL----H-N-------------DPNNENIRLAPS-L-PPVAELEVAMDGFAT 413 (422)
T ss_dssp ---TT-EECCCTTTTSGG----G-C-------------CTTSCEEEECCS-S-SCHHHHHHHHHHHHH
T ss_pred ---CC-eEEEcCccccCC----C-C-------------CCCCCeEEEecC-C-CCHHHHHHHHHHHHH
Confidence 23 4555431 1100 0 0 012478999999 6 444444444444443
No 132
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.95 E-value=2.2e-26 Score=229.42 Aligned_cols=277 Identities=12% Similarity=0.117 Sum_probs=181.7
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHH--hC---CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCc
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL--EG---TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLY 148 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l--~g---~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y 148 (447)
+.+.+.++.. .++...+.|+. .....++++.+|++ .| .+.+++|+|+++++.+++ .++.+||+|+++.|+|
T Consensus 53 ~a~~~~~~~~-~~~~~~~~y~~--~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y 128 (400)
T 3asa_A 53 EAFASSIARL-SSPTTCRGYGP--DFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLL-SFFGPNQTVAIQDPSY 128 (400)
T ss_dssp HHHHHHHHHH-TSSSCCCCCCC--TTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHH-HHHCSSCEEEEEESCC
T ss_pred HHHHHHHhcc-cccccccCCCC--CCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHH-HHcCCCCEEEECCCCc
Confidence 5555544322 22222344543 23346899999999 46 356999999999999865 4568899999999999
Q ss_pred hhHHHHHHhhcCcccCee-EEEeCCCCHHHHHHhhcc-CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeC
Q 013210 149 GGTHALLTHFFPRACNIT-TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~-~~~v~~~d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~ 223 (447)
+++...+. ..|.+ +..++.++...+...+++ +++++|++++|+||||.++| +++|+++|+++|+++|+|+
T Consensus 129 ~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 203 (400)
T 3asa_A 129 PAYLDIAR-----LTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDA 203 (400)
T ss_dssp HHHHHHHH-----HTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHH-----HcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 99887663 25666 777765421111111211 57899999999999999997 5678899999999999999
Q ss_pred CCCCCCC------CccCC----CCeEEEeCCCccccCCCCeeEEEEEcChHH-------HHHHHHHhhhhhhhcCCCccH
Q 013210 224 TFSPLVL------SPARL----GADVVVHSISKFISGGADIIAGAVCGPANL-------VNSMMDLHQGALMLLGPTMNP 286 (447)
Q Consensus 224 ~~~~~~~------~~~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~-------~~~l~~~~~~~~~~~g~~~~~ 286 (447)
+|..+.. ....+ +.++++.|+||++|++|.|+ ||+++++++ ++.+............+.+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Glri-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (400)
T 3asa_A 204 AYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRL-GWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQ 282 (400)
T ss_dssp TTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCC-EEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHH
T ss_pred hhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchhe-eEEeeChhhccchhhhHHHHHHHHhccCccCCChHHH
Confidence 9965432 22222 25699999999999999998 999998887 665543222111112333334
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-eCCHHHHHHH
Q 013210 287 KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-METEEKANRL 365 (447)
Q Consensus 287 ~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-l~~~~~~~~l 365 (447)
.++..++... ++....+++.++++++.+.|++.+.++..|. .|.++++. ++...+...+
T Consensus 283 ~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 342 (400)
T 3asa_A 283 EAGVAGLSIL-PQLEAIHYYRENSDLLRKALLATGFEVFGGE-------------------HAPYLWVKPTQANISDRDL 342 (400)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHTTCEEEECS-------------------SSSEEEEECCCTTCCTTTH
T ss_pred HHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------------CceEEEEeccCCCCCHHHH
Confidence 4443344332 4455667788999999999998876655332 35588998 7632122345
Q ss_pred HHHhhccccccccccccc
Q 013210 366 MNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G 383 (447)
...|... .| +.+..|
T Consensus 343 ~~~l~~~--~g-v~v~~g 357 (400)
T 3asa_A 343 FDFFLRE--YH-IAITPG 357 (400)
T ss_dssp HHHHHHH--HS-EECEEG
T ss_pred HHHHHHh--CC-EEEeCh
Confidence 5554321 23 455555
No 133
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.94 E-value=1.4e-25 Score=223.01 Aligned_cols=242 Identities=11% Similarity=0.046 Sum_probs=170.0
Q ss_pred cccccCCH-HHHHH-hhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhC--------CC--eEEEeCChHHHHHHHH--
Q 013210 66 ATFTVMEP-ETMRR-MFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TE--AAYCTASGMSAISSVL-- 131 (447)
Q Consensus 66 tt~~~~~~-~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g--------~~--~~~~tsggt~A~~~al-- 131 (447)
+++..+.+ +.+.+ .+... ..+.|+. .....++++.++++++ .+ .+++|+||++|+++++
T Consensus 42 ~~~~~~~v~~a~~~~~~~~~-----~~~~y~~--~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~ 114 (397)
T 3fsl_A 42 IIPQLQAVAEAEARLNAQPH-----GASLYLP--MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADF 114 (397)
T ss_dssp CCCCCHHHHHHHHHHHHSCC-----CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHhhccCcc-----ccccCCC--CCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHH
Confidence 34444455 55655 55421 1233442 1223578888888873 35 7899999999999995
Q ss_pred HHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC----C---CHHHHHHhhcc--CCceEEEEEcCCCCCccc
Q 013210 132 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFESISNPTLAV 202 (447)
Q Consensus 132 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~----~---d~~~l~~~i~~--~~t~lV~i~~~~NptG~v 202 (447)
.+++++||+|+++.|.|+++...+. ..|.++..++. + |+++|++++++ +++++|++++|+||||.+
T Consensus 115 ~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~ 189 (397)
T 3fsl_A 115 LKRYFPESGVWVSDPTWENHVAIFA-----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGAD 189 (397)
T ss_dssp HHHHCTTCCEEEESSCCHHHHHHHH-----HTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCC
T ss_pred HHhcCCCCeEEEeCCCchhHHHHHH-----HcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcC
Confidence 4567899999999999999987763 26778888876 3 89999999932 678999999999999999
Q ss_pred cC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----------cCCCCeEEEeCCCccccCCCCeeEEEEEc---ChHH
Q 013210 203 AN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAVCG---PANL 265 (447)
Q Consensus 203 ~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~ 265 (447)
.+ +++|+++|++||+++|+|++|+.+.+.. ...+.++++.|+||.+|++|.|+ ||++. +++.
T Consensus 190 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ri-G~~~~~~~~~~~ 268 (397)
T 3fsl_A 190 LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERV-GGLSVMCEDAEA 268 (397)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCC-EEEEEECSSHHH
T ss_pred CCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCe-eEEEEecCCHHH
Confidence 76 5589999999999999999997665531 12357899999999999999999 88753 4566
Q ss_pred HHHHHHH-hhh--hhhhcCCCccHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 266 VNSMMDL-HQG--ALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 266 ~~~l~~~-~~~--~~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
++.+... ... ......+...+.++...+.. .+++....+++.++++++.+.|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 333 (397)
T 3fsl_A 269 AGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTE 333 (397)
T ss_dssp HHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544322 110 11112233333333333332 2335566677889999999999876
No 134
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.94 E-value=9.7e-26 Score=226.23 Aligned_cols=242 Identities=13% Similarity=0.045 Sum_probs=169.1
Q ss_pred cccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhC--------CC--eEEEeCChHHHHHHHH--H
Q 013210 66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TE--AAYCTASGMSAISSVL--M 132 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g--------~~--~~~~tsggt~A~~~al--~ 132 (447)
.++..+.+ +.+.+.+... ..+.|+. .....++++.++++++ .+ .+++|+||++|+.+++ .
T Consensus 65 ~~~~~~~v~~a~~~~~~~~-----~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~ 137 (420)
T 4f4e_A 65 KIPLLRAVRDAEKARVEAG-----LPRGYLP--IDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFL 137 (420)
T ss_dssp CCCCCHHHHHHHHHHHHTC-----CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHhccC-----CCCCCCC--CCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHH
Confidence 44444455 5565555431 1234442 2223567888887762 34 7899999999999994 4
Q ss_pred HhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC----C---CHHHHHHhhcc--CCceEEEEEcCCCCCcccc
Q 013210 133 QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFESISNPTLAVA 203 (447)
Q Consensus 133 ~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~----~---d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~ 203 (447)
+++.+||+|+++.|.|+++...+. ..|.++..++. + |+++|++++++ +++++|++++|+||||.+.
T Consensus 138 ~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~ 212 (420)
T 4f4e_A 138 RTLNPKAKVAISDPSWENHRALFD-----MAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDL 212 (420)
T ss_dssp HHHCTTCCEEEEESCCHHHHHHHH-----HTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC
T ss_pred HHhCCCCEEEEeCCCcHhHHHHHH-----HcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence 668899999999999999987773 25777777766 2 89999999932 6789999999999999997
Q ss_pred C---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----------cCCCCeEEEeCCCccccCCCCeeEEEEEc---ChHHH
Q 013210 204 N---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAVCG---PANLV 266 (447)
Q Consensus 204 ~---l~~I~~la~~~gi~livD~~~~~~~~~~-----------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~ 266 (447)
+ +++|+++|++||+++|+|++|..+.++. ...+.++++.|+||.+|++|.|+ ||++. +++++
T Consensus 213 ~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~~~~~~~~~ 291 (420)
T 4f4e_A 213 NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERV-GALSIITDSKDEA 291 (420)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCE-EEEEEECSSHHHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCc-EEEEEEcCCHHHH
Confidence 6 6688999999999999999997766541 12367899999999999999999 87642 45655
Q ss_pred HHHHH-Hhhh--hhhhcCCCccHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 267 NSMMD-LHQG--ALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 267 ~~l~~-~~~~--~~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+.+.. .... ......+...+.++...+.. .+++....+++.++++.+.+.|+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 355 (420)
T 4f4e_A 292 ARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA 355 (420)
T ss_dssp HHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54322 1110 11112233333333333332 1234556677899999999999886
No 135
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.94 E-value=1.7e-25 Score=225.20 Aligned_cols=279 Identities=13% Similarity=0.125 Sum_probs=183.0
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHh----CC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCC
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----GT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTL 147 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~----g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~ 147 (447)
+++.+.... +++..+.+.|+. .....++++.+|+++ +. +.++||+|+++++.+ +..++++||+|+++.|.
T Consensus 76 ~a~~~~~~~-~~~~~~~~~y~~--~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~ 151 (432)
T 3ei9_A 76 SAMAKKAHE-LSTIEGYSGYGA--EQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPS 151 (432)
T ss_dssp HHHHHHHHH-TTSTTTCCCCCC--TTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESC
T ss_pred HHHHHHHhc-ccccCCccCCCC--CCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCC
Confidence 555555442 233233344542 233468999999986 43 569999999999987 57788999999999999
Q ss_pred chhHHHHHHhhcCcccC---------eeEEEeCCCCHHHHHHhhc-cCCceEEEEEcCCCCCccccC---HHHHHHHHHh
Q 013210 148 YGGTHALLTHFFPRACN---------ITTTFVDISDHEMVNSAIV-QGRTKVLYFESISNPTLAVAN---IPELSRLAHD 214 (447)
Q Consensus 148 y~~~~~~~~~~~~~~~g---------~~~~~v~~~d~~~l~~~i~-~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~ 214 (447)
|+++...+..... .+ .++.+++.++.+.+...++ .+++++|++++|+||||.+.+ +++|+++|++
T Consensus 152 y~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~ 229 (432)
T 3ei9_A 152 YPAYVDSSVIMGQ--TGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKK 229 (432)
T ss_dssp CTHHHHHHHHHTC--SCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC--cccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999887743321 12 2455555442211111121 357899999999999999986 6677778999
Q ss_pred cCCEEEEeCCCCCCCCC-----ccC----CCCeEEEeCCCccccCCCCeeEEEEEcChHH--------HHHHHHHhhhhh
Q 013210 215 KGVTVVVDNTFSPLVLS-----PAR----LGADVVVHSISKFISGGADIIAGAVCGPANL--------VNSMMDLHQGAL 277 (447)
Q Consensus 215 ~gi~livD~~~~~~~~~-----~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~--------~~~l~~~~~~~~ 277 (447)
||+++|+|++|+.+.+. ... .+.++++.|+||.+|++|.|+ ||+++++++ ++.+.......
T Consensus 230 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (432)
T 3ei9_A 230 NGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRL-GWTVIPKKLLYSDGFPVAKDFNRIICTC- 307 (432)
T ss_dssp HTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCC-EEEECCTTCBCTTSCBHHHHHHHHHHHS-
T ss_pred cCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccce-EEEEEChHHhhcchHHHHHHHHHHhccc-
Confidence 99999999999655332 111 256899999999999999999 999988877 66666554311
Q ss_pred hhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
....+.+.+.++..++. ..+++.+..+++.++++++.+.|+++++.+..|. .|.++++.
T Consensus 308 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~ 368 (432)
T 3ei9_A 308 FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGK-------------------NAPYVWVH 368 (432)
T ss_dssp CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECS-------------------SSSEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecCCC-------------------cceEEEEE
Confidence 11122222333333322 1234566777889999999999998876655332 35589999
Q ss_pred eCCHHHHHHHHHHhhccccccccccccc
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+++.. ...+...|... .| +.+..|
T Consensus 369 ~~~~~-~~~~~~~ll~~--~g-v~v~~g 392 (432)
T 3ei9_A 369 FPNQS-SWDVFAEILEK--TH-VVTTPG 392 (432)
T ss_dssp CTTSC-HHHHHHHHHHH--HC-EECEEG
T ss_pred CCCCC-HHHHHHHHHHH--CC-EEEeCc
Confidence 97322 34455554321 23 455555
No 136
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.94 E-value=6.9e-27 Score=229.71 Aligned_cols=312 Identities=13% Similarity=0.071 Sum_probs=200.5
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCCCC---ccccCCCCchHHHHHHHHHHHhCCC---eE-EEeCChHHHHHHHHHHhcC
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDRDF---FIYSRHFNPTVLNLSRQMAALEGTE---AA-YCTASGMSAISSVLMQLCS 136 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~l~~~ia~l~g~~---~~-~~tsggt~A~~~al~~l~~ 136 (447)
+++++.+.+ +++.+.+....+++++. ..++.......+++++.+++++|++ ++ ++|+||++|+++++.++++
T Consensus 11 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~ 90 (362)
T 2c0r_A 11 GPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK 90 (362)
T ss_dssp SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCC
Confidence 334444444 66666554432322331 1122222345789999999999985 54 6789999999999999999
Q ss_pred CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---------CHHHHHHhhccCCceEEEEEcCCCCCccc-cCHH
Q 013210 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIP 206 (447)
Q Consensus 137 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---------d~~~l~~~i~~~~t~lV~i~~~~NptG~v-~~l~ 206 (447)
+||+|++..+.|.+... . ..... .| ++++++.+ |.++++ + +++|++|++++++||||.+ .|++
T Consensus 91 ~gd~vl~~~~~~~~~~~-~-~~~~~-~g-~~~~v~~~~~~~~~~~~~~~~~~--i-~~~t~~v~~~~~~n~tG~~~~~l~ 163 (362)
T 2c0r_A 91 EGQTANYVMTGSWASKA-L-KEAKL-IG-DTHVAASSEASNYMTLPKLQEIQ--L-QDNAAYLHLTSNETIEGAQFKAFP 163 (362)
T ss_dssp TTCEEEEEECSHHHHHH-H-HHHHH-HS-CEEEEEECGGGTTCSCCCGGGCC--C-CTTEEEEEEESEETTTTEECSSCC
T ss_pred CCCeEEEEecCcHhHHH-H-HHHHH-hC-CeEEEecccccccccCCCHHHcc--c-CCCcCEEEEeCCcCccceeccccc
Confidence 99999988776544321 1 11122 57 76666532 333332 5 6789999999999999995 7888
Q ss_pred HHHHHHHhcCCEEEEeCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh---------h
Q 013210 207 ELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ---------G 275 (447)
Q Consensus 207 ~I~~la~~~gi~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~---------~ 275 (447)
+| +|+++|+|++|... ..+..+ .|+++.|+||++|++| + |++++++++++.+..... .
T Consensus 164 ~i------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~g~~G--~-G~l~~~~~~~~~l~~~~~~~~~~~~~~~ 232 (362)
T 2c0r_A 164 DT------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLGPSG--V-TVVIVREDLVAESPKHLPTMLRYDTYVK 232 (362)
T ss_dssp CC------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTCCSS--C-EEEEEEGGGSSSCCTTSCGGGCHHHHHH
T ss_pred cc------CCCEEEEEChhhccCCccchhH--CcEEEEeccccccCcC--c-EEEEEcHHHHhhccccCchHHhHHHHhh
Confidence 76 89999999999433 223222 4899999999999887 5 999988887655432100 0
Q ss_pred hhhhcCCCc--cHHHHHHHHccCC---cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhccCCCc
Q 013210 276 ALMLLGPTM--NPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANKEYGF 348 (447)
Q Consensus 276 ~~~~~g~~~--~~~~a~~~~~~~~---~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~~~g~ 348 (447)
.....++.. .+.++..++..+. .+..+.+++.++++++.+.|++++ . .+..+. .. ..
T Consensus 233 ~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~--------------~~ 296 (362)
T 2c0r_A 233 NNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDV--DS--------------RS 296 (362)
T ss_dssp TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCG--GG--------------BC
T ss_pred ccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCh--HH--------------cC
Confidence 001122222 1222223333221 356677888999999999999887 4 543221 00 13
Q ss_pred CcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 349 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 349 g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
+++++|.+++......+.+.|... | +.+..|.. ..+.||||++ ..++++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~L~~~---g-i~~~~g~~-------------------------~~~~iRis~~-~~~~~e~ 346 (362)
T 2c0r_A 297 DMNITFRLASEELEKEFVKASEQE---G-FVGLKGHR-------------------------SVGGLRASIY-NAVPYES 346 (362)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT---T-EESCBCCT-------------------------TTCSEEEECC-TTSCHHH
T ss_pred CcEEEEEcCCcchHHHHHHHHHHC---C-CeeccCCC-------------------------CCCEEEEECC-CCCCHHH
Confidence 458899987654567888888753 3 34333310 0256999999 8888888
Q ss_pred HHHHHHHHHHhh
Q 013210 429 WSQFEKALSRMQ 440 (447)
Q Consensus 429 i~~l~~al~~~~ 440 (447)
++.+.++|+++.
T Consensus 347 i~~l~~~l~~~~ 358 (362)
T 2c0r_A 347 CEALVQFMEHFK 358 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888764
No 137
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=2.8e-25 Score=219.59 Aligned_cols=288 Identities=12% Similarity=0.130 Sum_probs=193.4
Q ss_pred hHHHHHHHHHHHhCC------CeEEEeCChHHHHHHHHHHhc---CCCCeEEEeC-CCchhHH-HHHHhhcCcccCeeEE
Q 013210 100 TVLNLSRQMAALEGT------EAAYCTASGMSAISSVLMQLC---SSGGHVVAAR-TLYGGTH-ALLTHFFPRACNITTT 168 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~------~~~~~tsggt~A~~~al~~l~---~~gd~Vi~~~-~~y~~~~-~~~~~~~~~~~g~~~~ 168 (447)
...++++.++++++. +.+++|+||++|+.++++++. ++||+|++.. +.|+... ..+ .. .|.+++
T Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~----~~-~g~~~~ 113 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCL----RS-YGAQVD 113 (385)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHH----HH-TTCEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHH----HH-cCCceE
Confidence 356788888888875 469999999999999999987 8899998884 4555543 232 22 688888
Q ss_pred EeCC-C-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCC--CCCCCccCCCCe
Q 013210 169 FVDI-S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPARLGAD 238 (447)
Q Consensus 169 ~v~~-~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~--~~~~~~~~~g~d 238 (447)
.++. + |+++|++++++.++++|++++++||||.+.|+++|.++|+++ |+++|+|++|+ ...++...+++|
T Consensus 114 ~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d 193 (385)
T 2bkw_A 114 VVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVD 193 (385)
T ss_dssp EECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCS
T ss_pred EEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCce
Confidence 8887 3 899999999333799999999999999999999999999999 99999999993 233344456889
Q ss_pred EEEeCCCcccc-CCCCeeEEEEEcChHHHH-HHH------------------H----HhhhhhhhcCCC-ccHHHH-HHH
Q 013210 239 VVVHSISKFIS-GGADIIAGAVCGPANLVN-SMM------------------D----LHQGALMLLGPT-MNPKVA-FEL 292 (447)
Q Consensus 239 i~~~S~sK~~g-~~g~~igG~l~~~~~~~~-~l~------------------~----~~~~~~~~~g~~-~~~~~a-~~~ 292 (447)
+++.|+||+++ ++| + |+++.++++++ .+. . +..+.....++. .....+ ..+
T Consensus 194 ~~~~s~~K~~~~~~G--~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 270 (385)
T 2bkw_A 194 FALTASQKAIGAPAG--L-SISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVA 270 (385)
T ss_dssp EEEEESSSTTCCCSC--E-EEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHH
T ss_pred EEEecCccccccCCc--c-eEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHH
Confidence 99999999665 455 4 88888888766 442 1 111000001122 112212 222
Q ss_pred HccCC--cHHHHHHHHHHHHHHHHHHH-HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013210 293 SERIP--HLGLRMKEHCHRALIFARRM-KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 369 (447)
Q Consensus 293 ~~~~~--~l~~~~~~~~~~~~~l~~~L-~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l 369 (447)
+..+. .+....+++.++++++.+.| ++.+.++..|. +.. +..+.+++|.+++ ...+.+.|
T Consensus 271 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~-------------~~~~~~~~~~~~~---~~~~~~~l 333 (385)
T 2bkw_A 271 LKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRY-PSN-------------MSAHGLTAVYVAD---PPDVIAFL 333 (385)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCS-SST-------------TBCSSCEEEECSC---HHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccC-ccc-------------ccCCceEEEecCC---HHHHHHHH
Confidence 22221 24556777889999999999 87765554321 000 0135689999876 45677777
Q ss_pred hcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCC---CCHHHHHHHHHHHHHHh
Q 013210 370 QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYL---GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 370 ~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~---~~~~~~i~~l~~al~~~ 439 (447)
... | +.++.|... ...++.+||| +| . ..+++.++.+.++|+++
T Consensus 334 ~~~---g-i~v~~g~~~----------------------~~~~~~iRis~~~-~~~~~~~~e~i~~~~~~l~~~ 380 (385)
T 2bkw_A 334 KSH---G-VVIAGGIHK----------------------DIGPKYIRIGHMG-VTACNKNLPYMKNCFDLIKLA 380 (385)
T ss_dssp HHT---T-EECBCCCCT----------------------TTGGGEEEECCCG-GGTSSTTCTHHHHHHHHHHHH
T ss_pred HHC---C-eEEeCCCCc----------------------ccCCCEEEEEccc-cccccCCHHHHHHHHHHHHHH
Confidence 642 3 455544210 0124789999 76 3 23555556665555544
No 138
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.94 E-value=8.8e-26 Score=222.72 Aligned_cols=279 Identities=15% Similarity=0.201 Sum_probs=195.2
Q ss_pred CchHHHHHHHHHHHhCC-CeEEEeCChHHHHHHHHHH---hc---CCC-CeEEEeCCCchhHHHHHHhhcCcc---cCe-
Q 013210 98 NPTVLNLSRQMAALEGT-EAAYCTASGMSAISSVLMQ---LC---SSG-GHVVAARTLYGGTHALLTHFFPRA---CNI- 165 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~-~~~~~tsggt~A~~~al~~---l~---~~g-d~Vi~~~~~y~~~~~~~~~~~~~~---~g~- 165 (447)
.+...++++.+++++|. +.+++|+||++|+.++++. +. ++| |+|++++++|+++...+....... .|.
T Consensus 69 ~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~ 148 (375)
T 2eh6_A 69 NPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFE 148 (375)
T ss_dssp CHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTC
T ss_pred CHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCC
Confidence 45678999999999998 8899999999999999875 34 678 999999999988765442221110 122
Q ss_pred ----eEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----
Q 013210 166 ----TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP----- 232 (447)
Q Consensus 166 ----~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~----- 232 (447)
.+..++..|+++|++++ ++++++|++++++||||.+.+ +++|.++|++||+++|+|++|+++....
T Consensus 149 ~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~ 227 (375)
T 2eh6_A 149 PLVPGFSYAKLNDIDSVYKLL-DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAY 227 (375)
T ss_dssp SCCSSEEEECTTCHHHHHTTC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred CCCCCceeCCCchHHHHHHHh-cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhh
Confidence 26667777999999999 678999999999999999988 9999999999999999999997553221
Q ss_pred cCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHH
Q 013210 233 ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 310 (447)
Q Consensus 233 ~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~ 310 (447)
..++ .|++ |+||.+++ |.++ |+++.++++++.+.....+. ..+. ++.....+...++.+....+++.+++
T Consensus 228 ~~~~~~~d~~--s~SK~~~~-g~~~-G~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (375)
T 2eh6_A 228 QHFNLKPDVI--ALAKGLGG-GVPI-GAILAREEVAQSFTPGSHGS--TFGG--NPLACRAGTVVVDEVEKLLPHVREVG 299 (375)
T ss_dssp GGGTCCCSEE--EECGGGGT-TSCC-EEEEEEHHHHTTCCTTSCCC--SSTT--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCEE--EEcccccC-CCCe-EEEEEcHHHHhhhcCCCCCC--CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335 7777 56699994 7888 88888888776664421111 1222 22222222222233335667788889
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
+++.+.|++.+.... + +.|.++++.++.. ...+.+.|... | +.+..+
T Consensus 300 ~~l~~~L~~~~~~~~-~-------------------~~g~~~~~~~~~~--~~~~~~~l~~~---g-i~~~~~------- 346 (375)
T 2eh6_A 300 NYFKEKLKELGKGKV-K-------------------GRGLMLGLELERE--CKDYVLKALEK---G-LLINCT------- 346 (375)
T ss_dssp HHHHHHHHHTTSSEE-E-------------------EETTEEEEECSSC--CHHHHHHHHHT---T-EECEEE-------
T ss_pred HHHHHHHHHHhcCCc-e-------------------EEEEEEEEEEcCc--HHHHHHHHHHC---C-CEEecC-------
Confidence 999999988754111 1 2466999998741 34566666542 3 232211
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 347 --------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 347 --------------------AGKVLRFLPP-LIIQKEHIDRAISVLREI 374 (375)
T ss_dssp --------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred --------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence 1478999999 777788888887777653
No 139
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.94 E-value=3.3e-25 Score=219.15 Aligned_cols=308 Identities=14% Similarity=0.146 Sum_probs=215.4
Q ss_pred CchHHHHHHHH-HHHhC-CCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 98 NPTVLNLSRQM-AALEG-TEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 98 ~~~~~~l~~~i-a~l~g-~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.+.+.++|+.+ |+++| .+.+++|+|||+|+++++.++ +++||+|+++.++|.++...+. ..|.++++++.+
T Consensus 35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~v~~~~ 109 (377)
T 3ju7_A 35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAI-----WCGLEPYFIDISI 109 (377)
T ss_dssp CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCT
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCC
Confidence 47789999999 99999 888999999999999999998 8999999999999999887763 268899988764
Q ss_pred -----CHHHHHHhhccCC--ceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC---CeEEEe
Q 013210 174 -----DHEMVNSAIVQGR--TKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG---ADVVVH 242 (447)
Q Consensus 174 -----d~~~l~~~i~~~~--t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g---~di~~~ 242 (447)
|++++++++.+++ |++|+ ++||+|.+.|+++|.++|+ +|+++|+|++|+ +..+.....| .|+.++
T Consensus 110 ~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~ 185 (377)
T 3ju7_A 110 DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIY 185 (377)
T ss_dssp TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEE
T ss_pred ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEE
Confidence 8999999884445 88887 6789999999999999999 999999999994 2223322232 566666
Q ss_pred C--CCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhh--------hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 243 S--ISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL--------MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 243 S--~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~--------~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
| .+|++++ |. ||+++. ++++.++++..+.... ...+..++...++..+..++++..+.++.+++++
T Consensus 186 S~~~~K~l~~-g~--gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~ 262 (377)
T 3ju7_A 186 SFHATKPFGI-GE--GGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISE 262 (377)
T ss_dssp ECBTTSSSCC-BS--CEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ECCCCCcCCC-CC--cEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 4799996 53 577765 6788888877665221 0112345666666666667788889999999999
Q ss_pred HHHHHHHhCCC-ee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccc
Q 013210 312 IFARRMKKLGL-KV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 312 ~l~~~L~~~~~-~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
++.+.|++++. .+ ..|....+. .-.++.+.+++....+.+++.|...+ |.++.+....+-
T Consensus 263 ~~~~~L~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~~g----I~~~~~~~~~~~ 324 (377)
T 3ju7_A 263 WYKQLLQSNGLMKKGWQLQKTEAV--------------IQQFMPILCPEEVRNKQVIEDLKKQK----IEARLYFSPSCH 324 (377)
T ss_dssp HHHHHHHHTTTTTTTCBCCCCSCB--------------CCSSEEEECCTTSCHHHHHHHHHTTT----BCCBCTTSSCGG
T ss_pred HHHHHhcCCCCccccccCCCCCcc--------------eEEEEEEEeCChhhHHHHHHHHHHCC----CceecccCCccc
Confidence 99999998753 11 111111111 11145666664323567888887643 666666421111
Q ss_pred cccccccC--CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 390 SCSGSSTS--SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 390 ~~~a~~~~--~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
..|...++ ..++..+.. ..+.|||+++ ...+++.++.+.++|.++-
T Consensus 325 ~~~~~~~~~~~~~p~~~~~----~~~~l~lp~~-~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 325 QQVLFRNYKSTDLTRTNKI----AKRIVSLPLW-EGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp GSGGGTTSCBSCCHHHHHH----HHHEEEECCC-TTCCHHHHHHHHHHHTC--
T ss_pred cchhhhcCCCCCCHHHHHH----HhCEEECCCC-CCCCHHHHHHHHHHHHHHH
Confidence 11221111 122222211 2468999999 9999999999988887654
No 140
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.94 E-value=8.1e-25 Score=217.27 Aligned_cols=307 Identities=14% Similarity=0.202 Sum_probs=212.6
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++++.+|++++.+.+++|+||++|+.+++.++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 54 ~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~ 128 (391)
T 3dr4_A 54 VGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVT-----YCGATPVLVDNDPR 128 (391)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHH-----HCCCEEEEEecCcc
Confidence 45778999999999999999999999999999999999 8999999999999999987773 268888888765
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeCCC-
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHSIS- 245 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S~s- 245 (447)
|+++|++++ ++++++|+ ++||||.+.|+++|.++|+++|+++|+|++|+ +..+.....+ .|+++.|++
T Consensus 129 ~~~~d~~~l~~~~-~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~ 204 (391)
T 3dr4_A 129 TFNLDAAKLEALI-TPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFG 204 (391)
T ss_dssp TCSBCGGGSGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBT
T ss_pred ccCcCHHHHHHhc-CCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCC
Confidence 789999988 77888888 57899999999999999999999999999994 3333222221 367777755
Q ss_pred -ccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh--------hc--CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013210 246 -KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM--------LL--GPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 313 (447)
Q Consensus 246 -K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~--------~~--g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l 313 (447)
|++++ | + ||+++. ++++.+.+...+..... .. ...+....+...+..+..+....++..++++++
T Consensus 205 ~K~l~~-g-~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l 281 (391)
T 3dr4_A 205 NAIITT-G-E-GGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWY 281 (391)
T ss_dssp TSSSCC-B-S-CEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCcCCc-C-C-eEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 4 3 477765 45677777665432111 00 123344444444444455666777888888999
Q ss_pred HHHHHhCCCeeeCC--CCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCccccc
Q 013210 314 ARRMKKLGLKVLYP--GLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 314 ~~~L~~~~~~v~~p--~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
.+.|++.+..+..+ .... ...+.++++.+++ ......+.+.|... | +.++.|... +.
T Consensus 282 ~~~L~~~g~~~~~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~l~~~L~~~---G-I~v~~~~~p-~~ 342 (391)
T 3dr4_A 282 EQKLARLGNRVTKPHVALTG--------------RHVFWMYTVRLGEGLSTTRDQVIKDLDAL---G-IESRPVFHP-MH 342 (391)
T ss_dssp HHHHGGGTTSEECCCCCTTS--------------CCCCSSEEEEECSSCSSCHHHHHHHHHHT---T-CCCEECCCC-GG
T ss_pred HHHhhcCCccccCcCCCCCC--------------cceeEEEEEEECCccchhHHHHHHHHHHC---C-CceeecCCc-cc
Confidence 99998876555433 1100 0233467888874 22356777777753 3 566655321 11
Q ss_pred ccccccc--CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 390 SCSGSST--SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 390 ~~~a~~~--~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.|.... ...++..... ....|||+++ ...++++++.+.++|+++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 343 IMPPYAHLATDDLKIAEAC----GVDGLNLPTH-AGLTEADIDRVIAALDQV 389 (391)
T ss_dssp GSGGGGGGCCTTCHHHHHH----HHHEEEECCC-TTCCHHHHHHHHHHHHTT
T ss_pred cChhhhhcCcCCChHHHHH----HhCeEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 1111110 1112221211 1367999999 999999999999998765
No 141
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.94 E-value=4.4e-25 Score=219.08 Aligned_cols=310 Identities=17% Similarity=0.187 Sum_probs=215.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+...++++.+|+++|.+.+++|+||++|+.++++++ +++||+|+++.++|+++...+. ..|.++++++.+
T Consensus 38 ~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~ 112 (393)
T 1mdo_A 38 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-----LLGANPVMVDVDRDT 112 (393)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTT
T ss_pred ChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHH-----HCCCEEEEEeccCCc
Confidence 4677899999999999999999999999999999999 8999999999999999987763 268888888753
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC-CeEEEeCCC--c
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG-ADVVVHSIS--K 246 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g-~di~~~S~s--K 246 (447)
|+++|++++ ++++++|+++ ||+|.+.|+++|.++|+++|+++|+|++|+ +..+....++ .|+++.|+| |
T Consensus 113 ~~~d~~~l~~~l-~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K 188 (393)
T 1mdo_A 113 LMVTPEHIEAAI-TPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIK 188 (393)
T ss_dssp CCBCHHHHHHHC-CTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred CCCCHHHHHHhc-CCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCC
Confidence 799999999 6789998864 589999999999999999999999999995 3333333346 899999999 8
Q ss_pred cccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhh------------------hcC--CCccHHHHHHHHccCCcHHHHHHH
Q 013210 247 FISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------------------LLG--PTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------------------~~g--~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
++++ | + ||+++.+ +++++.+...+..... ..| ..+....+......++.+.+..++
T Consensus 189 ~l~~-~-~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~ 265 (393)
T 1mdo_A 189 NITC-A-E-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNAR 265 (393)
T ss_dssp SSCS-S-S-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHH
T ss_pred cccc-c-c-ceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8864 3 5 4888875 7888888765432110 011 123444444433344456667777
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHhhcccccccccccc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSL 382 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~l~~~l~~~~~~g~~~vs~ 382 (447)
..++++++.+.|++.+.++..+.....+ +.+.++++.++. ......+.+.|... | +.++.
T Consensus 266 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~l~~~l~~~---g-i~v~~ 328 (393)
T 1mdo_A 266 RAAIAAQYHQAMADLPFQPLSLPSWEHI-------------HAWHLFIIRVDEARCGITRDALMASLKTK---G-IGTGL 328 (393)
T ss_dssp HHHHHHHHHHHHHTSSCEECCCCSSCEE-------------CCCSCEEEECCHHHHSSCHHHHHHHHHHT---T-BCCBC
T ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCC-------------ceeEEEEEEecccccccCHHHHHHHHHhC---C-CCccc
Confidence 7788899999998877544321100001 234478998863 11356677777753 3 56666
Q ss_pred cCcccccccccccc---CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 383 GYYETLMSCSGSST---SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 383 G~~~s~~~~~a~~~---~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
|..+... .+.... ....+.... +....||||++ ...+++.++.+.++|+++.+.
T Consensus 329 ~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~-~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 329 HFRAAHT-QKYYRERFPTLTLPDTEW----NSERICSLPLF-PDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp CCCCGGG-SHHHHHHSTTCCCHHHHH----HHTTEEEECCC-TTCCHHHHHHHHHHHHHHHC-
T ss_pred ccCcccc-ChhhhccCCccCChhHHH----HHhCEEEecCC-CCCCHHHHHHHHHHHHHHHhc
Confidence 6432100 000000 000111000 01457999999 888899999999999877543
No 142
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.94 E-value=2.4e-25 Score=222.54 Aligned_cols=213 Identities=10% Similarity=0.058 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHh-CC-------CeEEE--eCChHHHHHHHHH--HhcCCC-----CeEEEeCCCchhHHHHHHhhcCccc
Q 013210 101 VLNLSRQMAALE-GT-------EAAYC--TASGMSAISSVLM--QLCSSG-----GHVVAARTLYGGTHALLTHFFPRAC 163 (447)
Q Consensus 101 ~~~l~~~ia~l~-g~-------~~~~~--tsggt~A~~~al~--~l~~~g-----d~Vi~~~~~y~~~~~~~~~~~~~~~ 163 (447)
..++++.+|+++ +. +.+++ |+||++|+.++++ .++.+| |+|+++.|+|+++...+. ..
T Consensus 76 ~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~-----~~ 150 (412)
T 1ajs_A 76 LAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT-----TA 150 (412)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH-----HT
T ss_pred CHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHH-----Hc
Confidence 468999999998 42 67999 9999999999964 456789 999999999999887763 25
Q ss_pred Cee-EEEeCC---C----CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013210 164 NIT-TTFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL 230 (447)
Q Consensus 164 g~~-~~~v~~---~----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~ 230 (447)
|.+ +..++. + |+++|++++.+ +++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.+
T Consensus 151 g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~ 230 (412)
T 1ajs_A 151 GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS 230 (412)
T ss_dssp TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccC
Confidence 677 776665 2 89999998843 36788889999999999976 56899999999999999999966644
Q ss_pred Cc-------c-----CCCCeEEEeCCCccccCCCCeeEEEEEc---ChHHHH----HHHHHhhhhhhhc-CCCccHHHHH
Q 013210 231 SP-------A-----RLGADVVVHSISKFISGGADIIAGAVCG---PANLVN----SMMDLHQGALMLL-GPTMNPKVAF 290 (447)
Q Consensus 231 ~~-------~-----~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~~----~l~~~~~~~~~~~-g~~~~~~~a~ 290 (447)
.. . ..+.++++.|+||.+|++|.|+ ||+++ ++++++ .+..... . ... .+.+.+.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~ 307 (412)
T 1ajs_A 231 GNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERV-GNLTVVAKEPDSILRVLSQMQKIVR-V-TWSNPPAQGARIVA 307 (412)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCSHHHHHHH
T ss_pred CcccccchHHHHHhccCCcEEEEEecccccCCCCcce-EEEEEecCCHHHHHHHHHHHHHHHh-c-ccCCCChHHHHHHH
Confidence 21 1 1235699999999999999999 88887 777443 3433222 1 122 2444444444
Q ss_pred HHHccCC-------cHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 291 ELSERIP-------HLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 291 ~~~~~~~-------~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.++.... ++....+++.++++++.+.|++++
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1ajs_A 308 RTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK 345 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4444321 345566778899999999998875
No 143
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.94 E-value=1.1e-24 Score=220.42 Aligned_cols=218 Identities=11% Similarity=0.087 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHh-CCC-------eEEE--eCChHHHHHH--HHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 101 VLNLSRQMAALE-GTE-------AAYC--TASGMSAISS--VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 101 ~~~l~~~ia~l~-g~~-------~~~~--tsggt~A~~~--al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
..++++.+++++ |.+ .+++ |+||++|+++ .+..++.+||+|+++.|+|+++...+..++.. .|.++.
T Consensus 96 ~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~-~G~~v~ 174 (448)
T 3meb_A 96 FPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNK-LKVPYK 174 (448)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCT-TTSCCE
T ss_pred hHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHh-CCCeEE
Confidence 468999999987 754 6999 9999999988 45667789999999999999998877422222 577777
Q ss_pred EeCC---C-----CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc--
Q 013210 169 FVDI---S-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-- 233 (447)
Q Consensus 169 ~v~~---~-----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-- 233 (447)
.++. + |+++|++++++ +++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.+...
T Consensus 175 ~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~ 254 (448)
T 3meb_A 175 EYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEA 254 (448)
T ss_dssp EECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHH
T ss_pred EEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCccc
Confidence 6664 2 88999999843 46888999999999999987 55699999999999999999976654421
Q ss_pred ----------CCCCeEEEeCCCccccCCCCeeEEEE--Ec---------Ch----HHHHHHHHHhhhhhhhcCCCccHHH
Q 013210 234 ----------RLGADVVVHSISKFISGGADIIAGAV--CG---------PA----NLVNSMMDLHQGALMLLGPTMNPKV 288 (447)
Q Consensus 234 ----------~~g~di~~~S~sK~~g~~g~~igG~l--~~---------~~----~~~~~l~~~~~~~~~~~g~~~~~~~ 288 (447)
....++++.|+||.+|++|.|+ ||+ +. ++ ++++.+...... .....+...+.+
T Consensus 255 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~a 332 (448)
T 3meb_A 255 DAFAVRMFVDAGVEVLVAQSFSKNFGLYGERI-GCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRK-TWSMSAIHGAYI 332 (448)
T ss_dssp HTHHHHHHHHTTCCEEEEEECTTTSCCGGGCC-EEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHT-TTSSCCHHHHHH
T ss_pred CchhHHHHhhcCCcEEEEecccccCCCccccc-eeeeeeeccccccccCCHHHHHHHHHHHHHHHhc-ccCCccHHHHHH
Confidence 1135688999999999999999 776 55 34 455555543331 111122233333
Q ss_pred HHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 289 AFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 289 a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+..++... +.+....+++.++++++.+.|++++
T Consensus 333 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 372 (448)
T 3meb_A 333 VQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK 372 (448)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333321 2245566778889999999998874
No 144
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.94 E-value=1.2e-25 Score=220.31 Aligned_cols=293 Identities=14% Similarity=0.091 Sum_probs=195.6
Q ss_pred CccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCC--eEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGG--HVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd--~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
...|+. ++...++++.+|+++|.+..++++||++|+.+++++++.+|| .|+++.+.|....... ... ...|.++
T Consensus 40 ~~~y~~--~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~-~~~-~~~g~~~ 115 (357)
T 3lws_A 40 SDQYGT--GAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQD-GLK-ELHPIET 115 (357)
T ss_dssp CEETTE--ETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHH-HHSSCEE
T ss_pred cccccC--ChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccc-hhh-hccCcEE
Confidence 345553 467789999999999998888889999999999999888887 5666666655443210 000 1147788
Q ss_pred EEeCCC----CHHHHHHhhccCCceEEEEEcCCCCC-ccccC---HHHHHHHHHhcCCEEEEeCCCC-C----CCCCcc-
Q 013210 168 TFVDIS----DHEMVNSAIVQGRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFS-P----LVLSPA- 233 (447)
Q Consensus 168 ~~v~~~----d~~~l~~~i~~~~t~lV~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~-~----~~~~~~- 233 (447)
..++.+ |+++|+++. ++++|++++|+||+ |.+.+ +++|+++|++||+++|+|++|. . ......
T Consensus 116 ~~v~~~~~~~d~~~l~~~~---~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~ 192 (357)
T 3lws_A 116 ILVGAADRLMTLDEIKALP---DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAE 192 (357)
T ss_dssp EECSCTTSCCCHHHHHTCC---SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHH
T ss_pred EEecCCCCCcCHHHHhcCc---CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHH
Confidence 887753 889998864 38999999999998 98886 8899999999999999999974 1 111111
Q ss_pred -CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCC-ccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 234 -RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 234 -~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
..+.|+++.|+||++++++ ||++++++++++.+...+... ..+.. ....++ .+...++...++++++.++++
T Consensus 193 ~~~~~d~~~~s~sK~~~~~~---gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 266 (357)
T 3lws_A 193 IAGLFDSIYISFYKGLGGIA---GAILAGPAAFCQTARIWKRRY--GGDLISLYPYIV-SADYYYELRKDRMGQYYEQAK 266 (357)
T ss_dssp HHTTSSEEEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHT--TCCCSCCHHHHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCEEEEeccccCCCCc---eEEEEcCHHHHHHHHHHHHHh--cCCcccchHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1247888999999996554 499999999998887665411 11111 122211 111222223334556778888
Q ss_pred HHHHHHHhCC-Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCccc
Q 013210 312 IFARRMKKLG-LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 312 ~l~~~L~~~~-~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++.+.|++++ .++. .|. .++++++.++.. .....+.+.|... | +.+..|...
T Consensus 267 ~l~~~L~~~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---G-i~v~~g~~~- 322 (357)
T 3lws_A 267 QLAEQFNALPGVHTTPEVP-------------------VSNMFHLHFDGQAADISPKLEQVQEET---G-LGFVGYLVD- 322 (357)
T ss_dssp HHHHHHHTSTTEEEESSSC-------------------SSSEEEEEEESCHHHHHHHHHHHHHHH---C-EESCSCCEE-
T ss_pred HHHHHHHhCCCCeeccCCC-------------------cceEEEEEecCChHHHHHHHHHHHHhc---C-eEEeccccc-
Confidence 9999999874 4553 232 355889988742 2356677777653 3 454444110
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+-..+++|+++| ........+++.++++++.+
T Consensus 323 ---------------------~~~~~~~r~~i~-~~~~~~~~~~l~~al~~l~~ 354 (357)
T 3lws_A 323 ---------------------KDGYCSTEISVG-DAYGELDQQTRDAGFARLRQ 354 (357)
T ss_dssp ---------------------CSSEEEEEEEBC-TTGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------CCCceEEEEEec-chhhhcCHHHHHHHHHHHHH
Confidence 101357999999 76555556666666666654
No 145
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.94 E-value=1.1e-25 Score=225.86 Aligned_cols=289 Identities=13% Similarity=0.127 Sum_probs=194.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcCc-------
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR------- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~------- 161 (447)
..+...+++++++++.|.+.++||+||++|+.++++.+.. +| ++||+.++.|++...........
T Consensus 97 ~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 176 (420)
T 2pb2_A 97 TNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176 (420)
T ss_dssp CCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred CCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence 5677899999999999999999999999999999998764 67 49999999998764332111110
Q ss_pred -ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccc----cCHHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013210 162 -ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV----ANIPELSRLAHDKGVTVVVDNTFSPLVLS----- 231 (447)
Q Consensus 162 -~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v----~~l~~I~~la~~~gi~livD~~~~~~~~~----- 231 (447)
.....+..++.+|+++|++++ ++++++|++++++|++|.+ .++++|.++|++||+++|+||+|+++...
T Consensus 177 ~p~~~~~~~~~~~d~~~le~~i-~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~ 255 (420)
T 2pb2_A 177 GPKPADIIHVPFNDLHAVKAVM-DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFA 255 (420)
T ss_dssp SSCCSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSH
T ss_pred CCCCCCeEEecCCCHHHHHHHh-ccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHH
Confidence 011236677778999999999 6789999999999988863 36899999999999999999999655332
Q ss_pred --ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHH
Q 013210 232 --PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 309 (447)
Q Consensus 232 --~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~ 309 (447)
......|++ |+||.++ +|.++ |+++.++++++.+..... .....++.+.+.++..++..++. ....+++.++
T Consensus 256 ~~~~~~~~dii--t~sK~l~-~G~~i-G~~~~~~~l~~~l~~~~~-~~t~~~~~~~~aa~~a~L~~~~~-~~~~~~~~~~ 329 (420)
T 2pb2_A 256 YMHYGVTPDIL--TSAKALG-GGFPV-SAMLTTQEIASAFHVGSH-GSTYGGNPLACAVAGAAFDIINT-PEVLQGIHTK 329 (420)
T ss_dssp HHHHTCCCSEE--EECGGGG-TTSCC-EEEEECHHHHTTCC-----CCEECCCHHHHHHHHHHHHHHSS-HHHHHHHHHH
T ss_pred HHhcCCCCCeE--Eeccccc-CCCce-EEEEEhHHHHHhhcCCCc-CcccCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 112346776 5789999 68888 888888887766644222 11233333444444444443333 3456777888
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--HHHHHHHHhhcccccccccccccCccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++++.+.|++.... +|..... .+.|.+++|.++... ....+.+.|... | +.+..+
T Consensus 330 ~~~l~~~L~~~~~~--~~~~~~~-------------~~~g~~~~v~~~~~~~~~~~~l~~~l~~~---G-i~v~~~---- 386 (420)
T 2pb2_A 330 RQQFVQHLQAIDEQ--FDIFSDI-------------RGMGLLIGAELKPKYKGRARDFLYAGAEA---G-VMVLNA---- 386 (420)
T ss_dssp HHHHHHHHHHHHHH--HCCEEEE-------------EEETTEEEEEECGGGTTCHHHHHHHHHHT---T-EECEES----
T ss_pred HHHHHHHHHHHHhc--CCCeEEE-------------EecceEEEEEECCCchHHHHHHHHHHHHC---C-CEEEeC----
Confidence 88888888764100 0100000 135779999997431 256677777652 3 233322
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 387 -----------------------~~~~iRl~~~-~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 387 -----------------------GADVMRFAPS-LVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp -----------------------STTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -----------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1368999987 655666666666555543
No 146
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.94 E-value=1.7e-24 Score=211.56 Aligned_cols=278 Identities=12% Similarity=0.103 Sum_probs=196.5
Q ss_pred CCchHHHHHHHHHHHhCCCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH--HHhhcCccc--CeeEEEeC
Q 013210 97 FNPTVLNLSRQMAALEGTEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRAC--NITTTFVD 171 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~--~~~~~~~~~--g~~~~~v~ 171 (447)
..+..+++++.+++++|.+. +++|+||++|+.+++++++++||+|+++.+.|.++... +. . . |.++..++
T Consensus 41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~----~-~~~g~~~~~v~ 115 (356)
T 1v72_A 41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPE----F-FSNGAKLMTVD 115 (356)
T ss_dssp CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHH----H-HTTSCEEEECC
T ss_pred cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHH----H-HhCCcEEEEec
Confidence 45777899999999999654 89999999999999999888999999999998876544 32 2 4 77888887
Q ss_pred CC----CHHHHHH-hhcc------CCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCC-----CCCc
Q 013210 172 IS----DHEMVNS-AIVQ------GRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPL-----VLSP 232 (447)
Q Consensus 172 ~~----d~~~l~~-~i~~------~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~-----~~~~ 232 (447)
.+ |+++|++ +++. +++++|++++|+| ||.+. ++++|.++|++||+++|+|++|..+ ...+
T Consensus 116 ~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~ 194 (356)
T 1v72_A 116 GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP 194 (356)
T ss_dssp CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT
T ss_pred CCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH
Confidence 65 8999999 8832 1689999999876 99965 5889999999999999999998421 1222
Q ss_pred cC----CCCeEEEeCCCccccCCCCeeE-EEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC--CcHHHHHHH
Q 013210 233 AR----LGADVVVHSISKFISGGADIIA-GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKE 305 (447)
Q Consensus 233 ~~----~g~di~~~S~sK~~g~~g~~ig-G~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~ 305 (447)
.. .+.|+++.|+||+ ++ ++| |+++.++++++.+...+.... .........+......+ .......++
T Consensus 195 ~~~~~~~~~d~~~~s~sK~-g~---~~G~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (356)
T 1v72_A 195 AEMTWKAGVDALSFGATKN-GV---LAAEAIVLFNTSLATEMSYRRKRAG--HLSSKMRFLSAQIDAYLTDDLWLRNARK 268 (356)
T ss_dssp TTTTGGGTCCEEEECCGGG-TC---SSCEEEEESSGGGHHHHHHHHHHTT--CCCSSTHHHHHHHHHHTSTTHHHHHHHH
T ss_pred HHhhhhhcCCEEEEecccC-CC---cCccEEEEECHHHHhhHHHHhhccC--chhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22 2678999999999 43 344 688889998888765543111 11111222222222222 223345667
Q ss_pred HHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 306 HCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
+.++++++.+.|+++ +.++..|. .+.++++.++. .+.+.|... | +.+..|.
T Consensus 269 ~~~~~~~l~~~L~~~~g~~~~~~~-------------------~~~~~~~~~~~-----~~~~~l~~~---g-i~v~~g~ 320 (356)
T 1v72_A 269 ANAAAQRLAQGLEGLGGVEVLGGT-------------------EANILFCRLDS-----AMIDALLKA---G-FGFYHDR 320 (356)
T ss_dssp HHHHHHHHHHHHTTCTTEEEESCC-------------------CSSEEEEEECH-----HHHHHHHHT---T-CBCBCSS
T ss_pred HHHHHHHHHHHHhhCCCcEEccCC-------------------CccEEEEEcCH-----HHHHHHHhc---C-eEEeccc
Confidence 788889999999875 44555442 34588888852 455666542 3 3444331
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
++ ++.+|||++ ...+++.++.+.++|+++.
T Consensus 321 -----------------------~~--~~~iRi~~~-~~~~~~~i~~~~~~l~~~l 350 (356)
T 1v72_A 321 -----------------------WG--PNVVRFVTS-FATTAEDVDHLLNQVRLAA 350 (356)
T ss_dssp -----------------------SS--TTEEEEECC-TTCCHHHHHHHHHHHHHTC
T ss_pred -----------------------cC--CCeEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 01 478999999 8888888888888887664
No 147
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.94 E-value=5.1e-25 Score=219.46 Aligned_cols=300 Identities=20% Similarity=0.177 Sum_probs=204.8
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+...++++.+|+++|.+.+++++||++|+..+++++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 62 ~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~ 136 (399)
T 2oga_A 62 GPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVS-----ATGATPVPVEPHEDH 136 (399)
T ss_dssp SHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCSSS
T ss_pred chhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HCCCEEEEEecCCCC
Confidence 3667899999999999999999999999999999998 8899999999999999887763 258888887643
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCccCCC--CeEEEeCC--C
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARLG--ADVVVHSI--S 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~~~~g--~di~~~S~--s 245 (447)
|+++|++++ ++++++|+ ++||+|.+.|+++|.++|+++|+++|+|++|+.. .++...++ .|+++.|+ +
T Consensus 137 ~~~d~~~l~~~i-~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~s 212 (399)
T 2oga_A 137 PTLDPLLVEKAI-TPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPG 212 (399)
T ss_dssp SSBCHHHHHHHC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTT
T ss_pred CCcCHHHHHHhc-CCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCC
Confidence 799999999 67888887 5789999999999999999999999999999533 23333334 69999999 6
Q ss_pred ccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhh------hcC--CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
|++|++| +. |+++.+ +++++.+...+..... ..| ..+++..++++...++.+....++..++++++.+.
T Consensus 213 K~~~~~G-~~-g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~ 290 (399)
T 2oga_A 213 KNLGCFG-DG-GAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSG 290 (399)
T ss_dssp SSSCCSS-CC-EEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCC-ce-EEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999878 65 888775 8888888765442100 001 13344444444444555555666777788888888
Q ss_pred HHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 317 MKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 317 L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
|+++ +.++..+ ++. +.+.++.|.+... ....+.+.|... | +.++.+.....-..+
T Consensus 291 L~~~~g~~~~~~--~~~--------------~~~~~~~~~~~~~-~~~~l~~~L~~~---g-I~v~~~~~~~~~~~~--- 346 (399)
T 2oga_A 291 LAGLPGIGLPVT--APD--------------TDPVWHLFTVRTE-RRDELRSHLDAR---G-IDTLTHYPVPVHLSP--- 346 (399)
T ss_dssp TTTCTTCBCCCC--CTT--------------EECCCSSEEEECS-SHHHHHHHHHHT---T-BCCBCSCSSCGGGSH---
T ss_pred hccCCCccccCC--CCC--------------CcceeEEEEEECC-CHHHHHHHHHHC---C-CceecCCCCccccch---
Confidence 8776 3333211 110 1111222333211 245666677653 3 444443210000000
Q ss_pred cCCCCCHHHHHhcCCC-----------CCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 396 TSSELNAEEKALAGIS-----------AGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 396 ~~~~~~~~~~~~~g~~-----------~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
....+|.. .+.||||++ ...+++.++.+.++|+++.+
T Consensus 347 --------~~~~~~~~~~~~p~~~~~~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 347 --------AYAGEAPPEGSLPRAESFARQVLSLPIG-PHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp --------HHHTTSCCTTSCHHHHHHHHHEEEECCS-TTCCHHHHHHHHHHHHHHHH
T ss_pred --------hhcccCCCCCCChhHHHHHhCEEEccCC-CCCCHHHHHHHHHHHHHHHH
Confidence 01111211 267999999 88888888888888877643
No 148
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.94 E-value=2.9e-26 Score=226.30 Aligned_cols=317 Identities=10% Similarity=0.031 Sum_probs=202.1
Q ss_pred ccccccccCCH-HHHHHhhcCCCCCCCCCc---cccCCCCchHHHHHHHHHHHhCCC---eEEE-eCChHHHHHHHHHHh
Q 013210 63 EASATFTVMEP-ETMRRMFAGELGPDRDFF---IYSRHFNPTVLNLSRQMAALEGTE---AAYC-TASGMSAISSVLMQL 134 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~l~~~ia~l~g~~---~~~~-tsggt~A~~~al~~l 134 (447)
+.++|++.+++ ++|.+.+...++||+|.| ..++.....++++|+.+|+++|++ .++| |+|||+|+++++.++
T Consensus 32 ~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l 111 (386)
T 3qm2_A 32 SSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNL 111 (386)
T ss_dssp CSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence 35677777776 778777777788888854 345556678899999999999984 3888 699999999999999
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--------CHHHHHHhhccCCceEEEEEcCCCCCccc-cCH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANI 205 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~i~~~~t~lV~i~~~~NptG~v-~~l 205 (447)
+++||+|++...++.+.. +.....+ .| ++++++.+ ++++++.++ +++|++|.+.+..|.+|.+ +|+
T Consensus 112 ~~~gd~v~~~~~~~~~~~--~~~~a~~-~G-~v~~v~~~~~~~G~~~~~~~~~~~l-~~~t~lV~~~h~et~tG~~i~pi 186 (386)
T 3qm2_A 112 LGDKTTADYVDAGYWAAS--AIKEAKK-YC-APQIIDAKITVDGKRAVKPMREWQL-SDNAAYLHYCPNETIDGIAIDET 186 (386)
T ss_dssp CTTCCEEEEEESSHHHHH--HHHHHTT-TS-EEEEEECEEEETTEEEECCGGGCCC-CTTCSCEEECSEETTTTEECCCC
T ss_pred cCCCCeEEEEeCCHHHHH--HHHHHHH-hC-CeEEEecCcccCCCCCCchHHHhhc-CCCCcEEEEECCcCCcCEecCch
Confidence 999999876666655542 2233344 68 77776543 456777777 7899999998888888996 999
Q ss_pred HHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHH----------HHh
Q 013210 206 PELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM----------DLH 273 (447)
Q Consensus 206 ~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~----------~~~ 273 (447)
++|. +|+++++|.+| +..+++..+++ ++++|.||++||+| + |+++.++++++.+. ...
T Consensus 187 ~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G--~-g~l~v~~~~~~~~~~~~p~~~~~~~~~ 256 (386)
T 3qm2_A 187 PDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAG--L-TLVIVREDLLGKAHESCPSILDYTVLN 256 (386)
T ss_dssp CCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTT--E-EEEEEEGGGCSCCCTTSCGGGCHHHHH
T ss_pred hhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCc--c-EEEEECHHHHhhhcccCCcHHHHHHHh
Confidence 9885 79999999999 56777777775 57799999999888 5 88887766532211 111
Q ss_pred hhhhhhcCC-CccHHH-HHHHHccCC---cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCc
Q 013210 274 QGALMLLGP-TMNPKV-AFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 348 (447)
Q Consensus 274 ~~~~~~~g~-~~~~~~-a~~~~~~~~---~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~ 348 (447)
. .....++ +..... ...++..+. .+....++..++++++.+.|++.++...... +. ...
T Consensus 257 ~-~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~----~~-----------~rs 320 (386)
T 3qm2_A 257 D-NDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVA----QA-----------NRS 320 (386)
T ss_dssp H-C-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBC----GG-----------GBC
T ss_pred h-cCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCC----HH-----------HcC
Confidence 1 0011222 222222 222222221 2455667778899999999988764111111 11 012
Q ss_pred CcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 349 GGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 349 g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
.++++|.+++. .+ ..++..|... | +.+..|.. | .+.+|+|++ ..++++
T Consensus 321 ~~iv~f~~~~~~~~-~~~~~~L~~~---g-I~~~~g~~--------~-----------------~~~iRiS~~-~~~t~e 369 (386)
T 3qm2_A 321 RMNVPFQLADNTLD-KVFLEESFAA---G-LHALKGHR--------V-----------------VGGMRASIY-NAMPIE 369 (386)
T ss_dssp SSEEEEEESSGGGH-HHHHHHHHHT---T-EECCBCCT--------T-----------------TCSEEEECC-TTSCHH
T ss_pred ceEEEEECCCcccc-HHHHHHHHHC---C-CEEeCCCC--------C-----------------cCeEEEEcC-CCCCHH
Confidence 35999999852 22 5677777653 3 44443411 0 145999999 999999
Q ss_pred HHHHHHHHHHHhhh
Q 013210 428 RWSQFEKALSRMQD 441 (447)
Q Consensus 428 ~i~~l~~al~~~~~ 441 (447)
+|+.|.++|+++.+
T Consensus 370 dId~l~~~l~~~~~ 383 (386)
T 3qm2_A 370 GVKALTDFMIDFER 383 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 149
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=1.4e-24 Score=217.62 Aligned_cols=312 Identities=17% Similarity=0.195 Sum_probs=210.4
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
....+++++.+++++|.+.+++++||++|+.++++++ +++||+|+++.++|+++...+. ..|.++++++.+
T Consensus 41 ~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~ 115 (418)
T 2c81_A 41 ESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVL-----NVNALPVFVDVEADT 115 (418)
T ss_dssp CCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHH-----HcCCEEEEEecCCCC
Confidence 3457899999999999999999999999999999998 8899999999999999987773 268888888764
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCC--CeEEEeCC--C
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSI--S 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g--~di~~~S~--s 245 (447)
|+++|++++ ++++++|++ +||+|.+.++++|.++|+++|+++|+|++|+.+. ++...++ .|+++.|+ |
T Consensus 116 ~~~d~~~l~~~i-~~~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~ 191 (418)
T 2c81_A 116 YCIDPQLIKSAI-TDKTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQG 191 (418)
T ss_dssp CSBCHHHHGGGC-CTTEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred CCcCHHHHHHhh-CCCCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCC
Confidence 899999999 678998885 5689999999999999999999999999995543 3222221 35666666 9
Q ss_pred ccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh------------h--c------C--CCccHHHHHHHHccCCcHHHH
Q 013210 246 KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM------------L--L------G--PTMNPKVAFELSERIPHLGLR 302 (447)
Q Consensus 246 K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------------~--~------g--~~~~~~~a~~~~~~~~~l~~~ 302 (447)
|++++ | +. |+++. ++++++.+...+..... . . | ..+....+......++.+...
T Consensus 192 K~~~~-g-~~-g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~ 268 (418)
T 2c81_A 192 KVLTA-G-EG-GIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDK 268 (418)
T ss_dssp SSSCS-S-SC-EEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHH
T ss_pred cccCC-C-Ce-EEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 99997 6 64 99888 47888877765432110 0 0 0 012333333333345567777
Q ss_pred HHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC----HHHHHHHHHHhhccccccc
Q 013210 303 MKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~----~~~~~~l~~~l~~~~~~g~ 377 (447)
.++..++++++.+.|++++ .++..+.. ... ...-.++.+.+++ ......+.+.|... +|
T Consensus 269 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g- 332 (418)
T 2c81_A 269 NAIREKNAMFLNDALSKIDGIKVMKRPP-QVS------------RQTYYGYVFRFDPVKFGGLNADQFCEILREK--LN- 332 (418)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEECCCCT-TEE------------ECCCSEEEEEECGGGTTTCCHHHHHHHHHHH--HT-
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCCCC-CCc------------ccccEEEEEEEccccccccCHHHHHHHHHHc--CC-
Confidence 7888888999999998774 34442210 000 0011266677762 22356677777653 24
Q ss_pred cc---ccccCcccccccccccc--C----------------CCCCHHHHHhcCCCCCeEEEEeCCCCC-HHHHHHHHHHH
Q 013210 378 MA---VSLGYYETLMSCSGSST--S----------------SELNAEEKALAGISAGLVRMSVGYLGT-LDQRWSQFEKA 435 (447)
Q Consensus 378 ~~---vs~G~~~s~~~~~a~~~--~----------------~~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~i~~l~~a 435 (447)
+. ++.|... +...|.... + ..++..+.. ..+.||||++ ... ++++++.+.++
T Consensus 333 I~~~~v~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~gt~edi~~~~~~ 406 (418)
T 2c81_A 333 MGTFYLHPPYLP-VHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERA----SGQSIVIHHA-ILLAEPSHLSLLVDA 406 (418)
T ss_dssp CCTTTEECCCCC-GGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH----HHHEEEEEGG-GGGSCHHHHHHHHHH
T ss_pred CCcccccccccc-cccCchhcccccccccccccccccccccCCChHHHHH----HhCEEEecCC-ccCCCHHHHHHHHHH
Confidence 45 6666421 100111000 0 001110000 1368999999 888 88899999999
Q ss_pred HHHhhhcC
Q 013210 436 LSRMQDSG 443 (447)
Q Consensus 436 l~~~~~~~ 443 (447)
|+++.+..
T Consensus 407 l~~~~~~~ 414 (418)
T 2c81_A 407 VAELARKF 414 (418)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 88775443
No 150
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=224.17 Aligned_cols=326 Identities=11% Similarity=0.042 Sum_probs=221.0
Q ss_pred CccccccccccccccCC-H-HHHHHhhcCCCCCCCCCccc---cCCCCchHHHHHHHHHHHhCCC---eEEE-eCChHHH
Q 013210 56 GGVNMSIEASATFTVME-P-ETMRRMFAGELGPDRDFFIY---SRHFNPTVLNLSRQMAALEGTE---AAYC-TASGMSA 126 (447)
Q Consensus 56 ~~~~~pi~~att~~~~~-~-~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~~~ia~l~g~~---~~~~-tsggt~A 126 (447)
|.-..-++.+|+...|. + ++|.+.+...++|++|.+.. +......++++|+.+++++|++ .++| |+|||+|
T Consensus 10 ~~~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a 89 (377)
T 3e77_A 10 GVDLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQ 89 (377)
T ss_dssp -----CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred ccCcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHH
Confidence 33344577778777764 5 88888888888888886443 3344567899999999999985 3888 5899999
Q ss_pred HHHHHHHhcCC--CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 127 ISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 127 ~~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
+++++.+++.+ ||+|++...++.+.. +...+.+ .|..+.+++.+ ++++++.++ +++|++|.+.+..|.+
T Consensus 90 ~n~a~~~l~~~~~Gd~v~~~~~g~~~~~--~~~~a~~-~G~~~~~~~~~~~~~~~~~~~~~~i-~~~t~lV~~~h~et~t 165 (377)
T 3e77_A 90 FSAVPLNLIGLKAGRCADYVVTGAWSAK--AAEEAKK-FGTINIVHPKLGSYTKIPDPSTWNL-NPDASYVYYCANETVH 165 (377)
T ss_dssp HHHHHHHHGGGSTTCEEEECCCSHHHHH--HHHHHTT-TSEEEECSCCCSSSCSCCCGGGCCC-CTTCSCEEEESEETTT
T ss_pred HHHHHHhccCCCCCCeEEEEECCHHHHH--HHHHHHH-hCCceEEeccCCCcCCCCChHHhcc-CCCccEEEEeCccCch
Confidence 99999998865 899988887776542 2244455 68888776653 456666667 7889999999888889
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHH-------
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM------- 270 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~------- 270 (447)
|.++|+ +|+++|+++++|.+| +..+++..+++ +++.|.||++|++| + |+++.++++++.+.
T Consensus 166 G~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G--~-g~l~~~~~~l~~~~~~~p~~~ 235 (377)
T 3e77_A 166 GVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAG--V-TVVIVRDDLLGFALRECPSVL 235 (377)
T ss_dssp TEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTT--C-EEEEEETTSCSCCCTTSCGGG
T ss_pred heEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCc--c-EEEEEcHHHHhhccCCCCchh
Confidence 999998 477899999999999 56677777776 58899999999888 4 77877665532221
Q ss_pred ---HHhhhhhhhcCCCccHHHHHH---HHccC--C-cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHH
Q 013210 271 ---DLHQGALMLLGPTMNPKVAFE---LSERI--P-HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 340 (447)
Q Consensus 271 ---~~~~~~~~~~g~~~~~~~a~~---~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~ 340 (447)
...... ...+ +++....+. ++..+ . .+..+.++..++++++.+.|++++ +.+. +.. +.
T Consensus 236 ~~~~~~~~~-~~~~-Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~-~~~---~~------ 303 (377)
T 3e77_A 236 EYKVQAGNS-SLYN-TPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVC-PVE---PQ------ 303 (377)
T ss_dssp CHHHHHTTT-TCSS-CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEEC-CSC---GG------
T ss_pred hHHHHhhcC-CCCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceec-CCC---HH------
Confidence 111101 1122 222222221 22211 1 355667778899999999999874 4432 211 11
Q ss_pred HhccCCCcCcEEEEEeCC----HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEE
Q 013210 341 MANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 416 (447)
Q Consensus 341 ~~~~~~g~g~~~~~~l~~----~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iR 416 (447)
...+.+++|.+++ .+....+++.+.. .| +.+..|.. ..+.+|
T Consensus 304 -----~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~---~G-i~~~~g~~-------------------------~~g~iR 349 (377)
T 3e77_A 304 -----NRSKMNIPFRIGNAKGDDALEKRFLDKALE---LN-MLSLKGHR-------------------------SVGGIR 349 (377)
T ss_dssp -----GBCSSEEEEEESSTTCCHHHHHHHHHHHHH---TT-EESCBCCT-------------------------TTCSEE
T ss_pred -----HcCCcEEEEEcCCCCCchhHHHHHHHHHHH---CC-cEEeCCCC-------------------------cCCEEE
Confidence 0123479999985 2211456776664 23 34333310 124699
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 417 MSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 417 iS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
+|++ ..++++.|+.|.++|+++.+.
T Consensus 350 iS~~-~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 350 ASLY-NAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred EECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999987643
No 151
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.94 E-value=2.2e-24 Score=214.50 Aligned_cols=329 Identities=12% Similarity=0.054 Sum_probs=220.0
Q ss_pred ccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCC
Q 013210 69 TVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAART 146 (447)
Q Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~ 146 (447)
..+++ +.+.+.+...|.+ ...+...++++.+|+++|.+.+++|+||++|++++++++ +++||+|+++.+
T Consensus 10 ~~~~v~~a~~~~~~~~~~~---------~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~ 80 (394)
T 1o69_A 10 MGGNELKYIEEVFKSNYIA---------PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSF 80 (394)
T ss_dssp --CCHHHHHHHHHHHTTTS---------CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESS
T ss_pred CCHHHHHHHHHHHHcCCcc---------CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCC
Confidence 33555 6666666432211 123667899999999999999999999999999999998 899999999999
Q ss_pred CchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC--CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEE
Q 013210 147 LYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 219 (447)
Q Consensus 147 ~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~--~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~l 219 (447)
+|+++...+. ..|.++.+++.+ |+++|++++... ++++|++++ |+|...++++|.++|+++|+++
T Consensus 81 ~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 81 TFIASVAPIC-----YLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVL 152 (394)
T ss_dssp SCGGGTHHHH-----HTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEE
T ss_pred ccHHHHHHHH-----HcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEE
Confidence 9999987773 258888888754 899999998322 689999875 8999999999999999999999
Q ss_pred EEeCCCC-CCCCCcc---C-CCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCC----------
Q 013210 220 VVDNTFS-PLVLSPA---R-LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPT---------- 283 (447)
Q Consensus 220 ivD~~~~-~~~~~~~---~-~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~---------- 283 (447)
|+|++|+ ++.+... . .++|+.++|.+|.+++. ++ |+++.+ +++++.+...+.... ...+.
T Consensus 153 i~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~--~~-G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~g~~~ 228 (394)
T 1o69_A 153 IEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTS--GG-GMLIGKNKEKIEKARFYSTQAR-ENCLHYEHLDYGYNY 228 (394)
T ss_dssp EEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS--SC-EEEEESCHHHHHHHHHHTBTCC-CSSSSCCCSSCCCBC
T ss_pred EEECcCcccceeCCcccccccCcEEEEEeCCccCCCC--Cc-eEEEECCHHHHHHHHHHHHhcc-ccCccccccccCccc
Confidence 9999995 4433221 1 24677777779988854 44 999885 788888876544210 00000
Q ss_pred -ccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---
Q 013210 284 -MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--- 359 (447)
Q Consensus 284 -~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--- 359 (447)
+.+..+...+..++.+.+.+++..++++++.+.|++. .++..+ ..... ..-.+++|.++..
T Consensus 229 ~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~--~~~~~------------~~~~~~~i~~~~~~~~ 293 (394)
T 1o69_A 229 RLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY-FSFLDE--LENSR------------SNRWLSTALINFDKNE 293 (394)
T ss_dssp BCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-EECCCC--CTTEE------------CCCSSEEEEESCCGGG
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCC--CCCCc------------ceeEEEEEEecchhhc
Confidence 2334444433345667778888999999999999876 433211 11000 0011577887631
Q ss_pred ------------------HHHHHHHHHhhcccccccccccccCccccccccccccC--CCCCHHHHHhcCCCCCeEEEEe
Q 013210 360 ------------------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS--SELNAEEKALAGISAGLVRMSV 419 (447)
Q Consensus 360 ------------------~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~--~~~~~~~~~~~g~~~~~iRiS~ 419 (447)
.....+.+.|... | +.++.|..+... .|..... ...+-.+.. ....+|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~~~~~~~~-~p~~~~~~~~~~~~~~~~----~~~~~~~~~ 364 (394)
T 1o69_A 294 LNACQKDINISQKNITLHPKISKLIEDLKNK---Q-IETRPLWKAMHT-QEVFKGAKAYLNGNSELF----FQKGICLPS 364 (394)
T ss_dssp SCCCCEEEECCCCCCCCCHHHHHHHHHHHHT---T-CCCBCCCCCGGG-CGGGTTCEEEECSHHHHH----HHHEEEECC
T ss_pred cccccccccccccccccccCHHHHHHHHHHc---C-CcccccCCcccc-chhhhccCCCCChHHHHH----hcCeEEccC
Confidence 1356788888753 3 577766433111 1111000 001111111 014566667
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcC
Q 013210 420 GYLGTLDQRWSQFEKALSRMQDSG 443 (447)
Q Consensus 420 g~~~~~~~~i~~l~~al~~~~~~~ 443 (447)
+ ...++++++.+.++|+++...+
T Consensus 365 ~-~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 365 G-TAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp C-TTCCHHHHHHHHHHHHHHHC--
T ss_pred C-CCCCHHHHHHHHHHHHHHHhcc
Confidence 8 8899999999999998876543
No 152
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.94 E-value=1.8e-25 Score=225.22 Aligned_cols=288 Identities=14% Similarity=0.135 Sum_probs=187.7
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc---------CCC-CeEEEeCCCchhHHHHHHhhcCc-----
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR----- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~---------~~g-d~Vi~~~~~y~~~~~~~~~~~~~----- 161 (447)
..+...+++++++++.|.+.++||+||++|+..+++.+. .+| ++||+.++.|++...........
T Consensus 105 ~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 184 (433)
T 1z7d_A 105 FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTS 184 (433)
T ss_dssp EEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-------------------
T ss_pred CCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccc
Confidence 456778999999999999999999999999999998753 357 89999999998865432111000
Q ss_pred ---ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013210 162 ---ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS--- 231 (447)
Q Consensus 162 ---~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~--- 231 (447)
.....+..++.+|+++|+++++++++++|++++++|++|.+. ++++|.++|++||+++|+||+|+++...
T Consensus 185 ~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~ 264 (433)
T 1z7d_A 185 NFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 264 (433)
T ss_dssp -------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcc
Confidence 001356677778999999999446789999998888999876 6999999999999999999999655321
Q ss_pred ----ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHH
Q 013210 232 ----PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 232 ----~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
......|++ |++|.++ +| .++ |++++++++++.+..... ..+..++.+...++..++..++. ....++.
T Consensus 265 ~~~~~~~~~~di~--t~sK~l~-~G~~~~-G~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~ 338 (433)
T 1z7d_A 265 LCVHHYNVKPDVI--LLGKALS-GGHYPI-SAVLANDDIMLVIKPGEH-GSTYGGNPLAASICVEALNVLIN-EKLCENA 338 (433)
T ss_dssp SGGGGGTCCCSEE--EECGGGG-TTSSCC-EEEEECHHHHTTCCTTCC-CCTTTTCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred hhhHhcCCCCCEE--EECcccc-CCCCCe-EEEEECHHHHhhhccccc-cccCCCCHHHHHHHHHHHHHHHh-ccHHHHH
Confidence 112346766 6889999 57 787 999999988776643222 11223333333333333322211 1345667
Q ss_pred HHHHHHHHHHHHhC--CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccc
Q 013210 307 CHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 307 ~~~~~~l~~~L~~~--~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
.++++++.+.|++. +.... .. ..+.|.++++.++.. .....+.+.|... | +.+..+
T Consensus 339 ~~~~~~l~~~L~~l~~~~~~~----~~-------------~~~~g~~~~i~~~~~~~~~~~~~~~l~~~---G-v~v~~~ 397 (433)
T 1z7d_A 339 EKLGGPFLENLKRELKDSKIV----RD-------------VRGKGLLCAIEFKNELVNVLDICLKLKEN---G-LITRDV 397 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCTTE----EE-------------EEEETTEEEEEECTTTCCHHHHHHHHHHT---T-EECCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCe----EE-------------EEeeeeEEEEEEccChhHHHHHHHHHHHC---C-eEEecC
Confidence 78888888888764 22110 00 013677999999743 2255677777652 3 232211
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..+.|||+++ ...+++.++.+.++|+++
T Consensus 398 ---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 398 ---------------------------HDKTIRLTPP-LCITKEQLDECTEIIVKT 425 (433)
T ss_dssp ---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 1468999998 766666666666666554
No 153
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.94 E-value=1.8e-25 Score=225.58 Aligned_cols=288 Identities=14% Similarity=0.112 Sum_probs=196.3
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc---------CCC-CeEEEeCCCchhHHHHHHhhcCc-----
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR----- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~---------~~g-d~Vi~~~~~y~~~~~~~~~~~~~----- 161 (447)
..+...++++.+++++|.+.++||+||++|+..+++.+. .+| ++||+.++.|++...........
T Consensus 116 ~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 195 (439)
T 2oat_A 116 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD 195 (439)
T ss_dssp EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhccc
Confidence 456778999999999999999999999999999998764 356 89999999998764332111110
Q ss_pred ---ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013210 162 ---ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS--- 231 (447)
Q Consensus 162 ---~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~--- 231 (447)
.....+..++.+|+++|+++++++++++|++++++|++|.+. ++++|.++|++||+++|+||+|+++...
T Consensus 196 ~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~ 275 (439)
T 2oat_A 196 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 275 (439)
T ss_dssp TSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcc
Confidence 011456777778999999999446789999998889999876 6999999999999999999999655321
Q ss_pred ----ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHH
Q 013210 232 ----PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 232 ----~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
......|++ |++|.+++ | .++ |++++++++++.+..... ..+..++.+...++..++..++. ....++.
T Consensus 276 ~~~~~~~~~~Di~--t~sK~l~~-G~~~~-G~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~ 349 (439)
T 2oat_A 276 LAVDYENVRPDIV--LLGKALSG-GLYPV-SAVLCDDDIMLTIKPGEH-GSTYGGNPLGCRVAIAALEVLEE-ENLAENA 349 (439)
T ss_dssp SGGGGGTCCCSEE--EECGGGGT-TSSCC-EEEEECHHHHTTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred hhHHHhCCCCcEE--EecccccC-CCCCe-EEEEECHHHHhccCCCCc-ccCCCcCHHHHHHHHHHHHHHhh-hhHHHHH
Confidence 112245766 78899995 7 787 999999888776653222 11223333333333333322211 1345677
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccC
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
.++++++.+.|++.+..+.. .. .+.|.++++.++.. .....+.+.|... | +.+..+
T Consensus 350 ~~~~~~l~~~L~~l~~~~~~----~~-------------~~~g~~~~v~l~~~~~~~~~~l~~~l~~~---G-v~v~~~- 407 (439)
T 2oat_A 350 DKLGIILRNELMKLPSDVVT----AV-------------RGKGLLNAIVIKETKDWDAWKVCLRLRDN---G-LLAKPT- 407 (439)
T ss_dssp HHHHHHHHHHHTTSCTTTEE----EE-------------EEETTEEEEEECCCSSCCHHHHHHHHHHT---T-EECCBS-
T ss_pred HHHHHHHHHHHHHhcCCCcE----EE-------------EeeeeEEEEEEecCccHHHHHHHHHHHHC---C-eEEecC-
Confidence 88889999999876321110 00 14677999999743 1245677777652 3 222211
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+||+++ ...+++.++.+.++|+++
T Consensus 408 --------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 435 (439)
T 2oat_A 408 --------------------------HGDIIRFAPP-LVIKEDELRESIEIINKT 435 (439)
T ss_dssp --------------------------SSSEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred --------------------------CCCEEEEECc-cCCCHHHHHHHHHHHHHH
Confidence 1478999998 777777777777777654
No 154
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.93 E-value=2.1e-24 Score=211.17 Aligned_cols=289 Identities=13% Similarity=0.070 Sum_probs=199.1
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH--HHhhcCcccCee
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRACNIT 166 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~--~~~~~~~~~g~~ 166 (447)
|..++...+..+++++.+++++|.+ .+++|+||++|+..++++++++||+|+++.++|+++... +. . .|.+
T Consensus 41 ~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~ 115 (359)
T 1svv_A 41 QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIE----A-TGHK 115 (359)
T ss_dssp CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHH----H-TTCC
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHh----c-CCCe
Confidence 3344455678899999999999864 599999999999999999999999999999999988652 31 2 5888
Q ss_pred EEEeCCC----CHHHHHHhhccC------CceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCC-----C
Q 013210 167 TTFVDIS----DHEMVNSAIVQG------RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSP-----L 228 (447)
Q Consensus 167 ~~~v~~~----d~~~l~~~i~~~------~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~-----~ 228 (447)
+..++.+ |+++|++++++. ++++|++++| ||||.+.| +++|.++|++||+++|+|++|.. .
T Consensus 116 ~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~ 194 (359)
T 1svv_A 116 VVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSP 194 (359)
T ss_dssp EEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTST
T ss_pred eEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCC
Confidence 8888765 699999998433 3899999999 79999998 88999999999999999999822 2
Q ss_pred CCCccC----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 229 VLSPAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 229 ~~~~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
...... ...|+++.|++|+.++.| + |+++.++++++.+...................+.........+....+
T Consensus 195 ~~~~~~~~~~~~~d~~~~s~~K~g~~~~--~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (359)
T 1svv_A 195 VNDLTLADIARLTDMFYIGATKAGGMFG--E-ALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGA 271 (359)
T ss_dssp TCCCCHHHHHHHCSEEEEECTTTTCSSC--E-EEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHH
T ss_pred CcchhhhhhhhcCCEEEEecccCCCCCc--e-EEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHH
Confidence 222211 257899999999865433 4 888888888777665422111111111112222222222233556677
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 305 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
++.++++++.+.|+..+.++..|. .+.++++.++ ..+.+.|... +| +.+ .+
T Consensus 272 ~~~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~-----~~~~~~l~~~--~g-i~v-~~- 322 (359)
T 1svv_A 272 HSNKMAAILKAGLEACGIRLAWPS-------------------ASNQLFPILE-----NTMIAELNND--FD-MYT-VE- 322 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCCBSSCC-------------------SSSEECBEEE-----HHHHHHHTTT--EE-CEE-EE-
T ss_pred HHHHHHHHHHHHhccCCeEEccCC-------------------ccceEEEEcC-----HHHHHHHHHh--cC-EEE-Ee-
Confidence 888999999999954444444332 3446777764 2566666552 24 233 11
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.. ...++.+|||++ ...+++.++.+.++|+++.
T Consensus 323 --------~~--------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 323 --------PL--------------KDGTCIMRLCTS-WATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp --------EE--------------TTTEEEEEEECC-TTCCHHHHHHHHHHHHHC-
T ss_pred --------cc--------------cCCCceEEEEcc-CcCCHHHHHHHHHHHHHHH
Confidence 00 012468999999 7778888888888887653
No 155
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.93 E-value=8.1e-26 Score=224.98 Aligned_cols=281 Identities=12% Similarity=0.158 Sum_probs=191.7
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC------C-CCeEEEeCCCchhHHH-HHHhhcCcccCee--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS------S-GGHVVAARTLYGGTHA-LLTHFFPRACNIT-- 166 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~------~-gd~Vi~~~~~y~~~~~-~~~~~~~~~~g~~-- 166 (447)
..+...++++.+++++|.+.+++|+||++|+.++++++.. + +++|++.++.|++... .+. . .|.+
T Consensus 80 ~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-~----~g~~~~ 154 (397)
T 2ord_A 80 WNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT-A----TGQPKY 154 (397)
T ss_dssp EEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH-H----SBCHHH
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh-c----cCChhh
Confidence 4567899999999999999999999999999999988753 4 4789999999876544 332 1 2222
Q ss_pred ----------EEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcc-c---cCHHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013210 167 ----------TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLA-V---ANIPELSRLAHDKGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 167 ----------~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~-v---~~l~~I~~la~~~gi~livD~~~~~~~~~- 231 (447)
+..++.+|+++|++++ ++++++|++++|+||||. + .++++|.++|++||+++|+|++|+++...
T Consensus 155 ~~~~~p~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g 233 (397)
T 2ord_A 155 QKPFEPLVPGFEYFEFNNVEDLRRKM-SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG 233 (397)
T ss_dssp HGGGCSCCTTEEEECTTCHHHHHHHC-CTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred ccccCCCCCCeeEecCCCHHHHHHHh-hcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc
Confidence 6777778999999999 678999999999999999 4 46889999999999999999999655432
Q ss_pred -c---cCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 232 -P---ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 232 -~---~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
+ ..++ .|++ |+||.++ +|.|+ |+++.+++++ .+..... .....++.+.+.++..++..+.. ....++
T Consensus 234 ~~~~~~~~~~~~d~~--s~sK~~~-~G~r~-G~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 306 (397)
T 2ord_A 234 KLFAYQKYGVVPDVL--TTAKGLG-GGVPI-GAVIVNERAN-VLEPGDH-GTTFGGNPLACRAGVTVIKELTK-EGFLEE 306 (397)
T ss_dssp SSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECSTTC-CCCTTSS-CCSSTTCHHHHHHHHHHHHHHTS-TTHHHH
T ss_pred cchhhhhhCCCCCee--eeccccC-CCcCe-EEEEEchHhc-ccCCCCc-CCCCCCCHHHHHHHHHHHHHHHh-CCHHHH
Confidence 1 1123 6766 6789999 68888 8888777765 4432111 11122222333333333332222 335667
Q ss_pred HHHHHHHHHHHHHhCC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 306 HCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+.++++++.+.|++.+ ..+.. ..+ +.|.++++.++.......+.+.|... | +.+..|
T Consensus 307 ~~~~~~~l~~~L~~~~~~~~~~~----~~~-------------~~g~~~~~~~~~~~~~~~l~~~l~~~---g-i~v~~~ 365 (397)
T 2ord_A 307 VEEKGNYLMKKLQEMKEEYDVVA----DVR-------------GMGLMIGIQFREEVSNREVATKCFEN---K-LLVVPA 365 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEE----EEE-------------EETTEEEEEECTTSCHHHHHHHHHHT---T-EECEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCceE----EEE-------------EEeEEEEEEECChHHHHHHHHHHHHC---C-CEEccC
Confidence 7888888888887642 21100 000 24679999997532356677777652 3 333322
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 366 ---------------------------~~~~iRis~~-~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 366 ---------------------------GNNTIRFLPP-LTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp ---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 1468999988 666667677766666554
No 156
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.93 E-value=4.4e-25 Score=219.35 Aligned_cols=214 Identities=16% Similarity=0.148 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHHh---C-----CCeEEE--eCChHHHHHHHHHHh--cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 100 TVLNLSRQMAALE---G-----TEAAYC--TASGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 100 ~~~~l~~~ia~l~---g-----~~~~~~--tsggt~A~~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
...++++.+|+++ + .+.+++ |+||++|++++++.+ +.+||+|+++.|.|+++...+. ..|.++
T Consensus 70 g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~ 144 (396)
T 2q7w_A 70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-----SAGLEV 144 (396)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-----HTTCEE
T ss_pred CCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----HcCCce
Confidence 3468999999987 2 456888 999999999998765 3689999999999999887763 257787
Q ss_pred EEeCC---C----CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---
Q 013210 168 TFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--- 232 (447)
Q Consensus 168 ~~v~~---~----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--- 232 (447)
..++. + |+++|++++.+ ++++++++++|+||||.+.+ +++|+++|++||+++|+|++|..+.+..
T Consensus 145 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 224 (396)
T 2q7w_A 145 REYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEED 224 (396)
T ss_dssp EEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHH
T ss_pred EEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccch
Confidence 77776 3 89999999833 24788889999999999986 5689999999999999999996654421
Q ss_pred ---cC-----CCCeEEEeCCCccccCCCCeeEEEEEc---ChH----HHHHHHHHhhhhhhhcC-CCccHHHHHHHHccC
Q 013210 233 ---AR-----LGADVVVHSISKFISGGADIIAGAVCG---PAN----LVNSMMDLHQGALMLLG-PTMNPKVAFELSERI 296 (447)
Q Consensus 233 ---~~-----~g~di~~~S~sK~~g~~g~~igG~l~~---~~~----~~~~l~~~~~~~~~~~g-~~~~~~~a~~~~~~~ 296 (447)
.. .+.++++.|+||.+|++|.|+ ||++. +++ +++.+..... . ...+ +.+.+.++..++...
T Consensus 225 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~ 301 (396)
T 2q7w_A 225 AEGLRAFAAMHKELIVASSYSXNFGLYNERV-GACTLVAADSETVDRAFSQMKAAIR-A-NYSNPPAHGASVVATILSND 301 (396)
T ss_dssp THHHHHHHHHCSCEEEEEECTTTTTCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCHHHHHHHHHHHTSH
T ss_pred hHHHHHHHhcCCcEEEEEecccccccccccc-ceEEEEcCCHHHHHHHHHHHHHHHh-h-ccCCCCcHHHHHHHHHhcCh
Confidence 11 146789999999999999998 88875 554 4444443222 1 1222 233333333333322
Q ss_pred -------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 297 -------PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 297 -------~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+++....+++.++++++.+.|++.+
T Consensus 302 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 333 (396)
T 2q7w_A 302 ALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2334445667888999999998875
No 157
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.93 E-value=1.5e-25 Score=222.90 Aligned_cols=284 Identities=13% Similarity=0.160 Sum_probs=192.6
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHH-HHHhhcCc--------cc
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHA-LLTHFFPR--------AC 163 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~-~~~~~~~~--------~~ 163 (447)
..+..+++++.++++++ .+.+++|+||++|+.++++++. .+|++|+++++.|++... .+. .... ..
T Consensus 85 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~-~~g~~~~~~~~~p~ 163 (395)
T 1vef_A 85 PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLS-VTWEPKYREPFLPL 163 (395)
T ss_dssp CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHH-TCCCHHHHGGGCSC
T ss_pred CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhh-hcCCcccccccCCC
Confidence 46778999999999994 5679999999999999998764 578999999999976543 331 1110 01
Q ss_pred CeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-------c
Q 013210 164 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------P 232 (447)
Q Consensus 164 g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-------~ 232 (447)
...+..++..|+++|++++ ++++++|++++++||||.+.| +++|.++|++||+++|+|++|+++... .
T Consensus 164 ~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~ 242 (395)
T 1vef_A 164 VEPVEFIPYNDVEALKRAV-DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH 242 (395)
T ss_dssp SSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred CCCeeEeCCCcHHHHHHHh-ccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhh
Confidence 1125566667999999999 678999999888999999988 999999999999999999999755321 1
Q ss_pred cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013210 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI 312 (447)
Q Consensus 233 ~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~ 312 (447)
.....|++ |+||++++ |.++ |+++.++++++.+..... .....++.+.+.++..++..+.. ....+++.+++++
T Consensus 243 ~~~~~d~~--s~sK~~~~-g~~~-G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~ 316 (395)
T 1vef_A 243 FGIVPDIL--TLAKALGG-GVPL-GVAVMREEVARSMPKGGH-GTTFGGNPLAMAAGVAAIRYLER-TRLWERAAELGPW 316 (395)
T ss_dssp HTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHHTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHH
T ss_pred cCCCCCEE--EEcccccC-CCce-EEEEehHHHHhhhccCCc-CCCcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 22346766 78999997 7888 888888877665543111 11111122222222222222211 2245667888899
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccCccccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~-~~~~~g~~~vs~G~~~s~~~~ 391 (447)
+.+.|++.+..+.. ..+ +.|.++++.++.. ...+.+.|. .. | +.+..+
T Consensus 317 l~~~l~~~~~~~~~----~~~-------------~~g~~~~~~~~~~--~~~l~~~l~~~~---g-i~v~~~-------- 365 (395)
T 1vef_A 317 FMEKLRAIPSPKIR----EVR-------------GMGLMVGLELKEK--AAPYIARLEKEH---R-VLALQA-------- 365 (395)
T ss_dssp HHHHHHTSCCTTEE----EEE-------------EETTEEEEEESSC--SHHHHHHHHHHH---C-EECEES--------
T ss_pred HHHHHHHhhcCceE----EEE-------------EEEEEEEEEEcCh--HHHHHHHHHHHC---C-eEEecC--------
Confidence 99999876531110 001 2466999999742 345666665 42 3 333321
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 366 -------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 393 (395)
T 1vef_A 366 -------------------GPTVIRFLPP-LVIEKEDLERVVEAVRAV 393 (395)
T ss_dssp -------------------STTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------------------CCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 1478999999 777888888887777654
No 158
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.93 E-value=2.6e-25 Score=220.97 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHh-C----CCeEEE--eCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE-G----TEAAYC--TASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~-g----~~~~~~--tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ + .+.+++ |+||++|+.++++.+.. +||+|+++.|+|+++...+. ..|.++..++
T Consensus 71 ~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~ 145 (394)
T 2ay1_A 71 EPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMN-----FMGLPVQTYR 145 (394)
T ss_dssp CHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-----HHTCCEEEEE
T ss_pred cHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCceEEEe
Confidence 468999999986 4 356888 99999999999987754 89999999999999887763 2566777776
Q ss_pred C---C----CHHHHHHhhccC--CceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------cc
Q 013210 172 I---S----DHEMVNSAIVQG--RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PA 233 (447)
Q Consensus 172 ~---~----d~~~l~~~i~~~--~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~ 233 (447)
. + |++++++++++. +++++++++|+||||.+++ +++|+++|+++|+++|+|++|..+.+. +.
T Consensus 146 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 225 (394)
T 2ay1_A 146 YFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGT 225 (394)
T ss_dssp CEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHH
T ss_pred cccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHH
Confidence 5 3 899999988432 4678888999999999986 558899999999999999999765442 11
Q ss_pred ----CC-CCeEEEeCCCccccCCCCeeEEEEEc---ChHHHHHHHH----HhhhhhhhcC-CCccHHHHHHHHccC----
Q 013210 234 ----RL-GADVVVHSISKFISGGADIIAGAVCG---PANLVNSMMD----LHQGALMLLG-PTMNPKVAFELSERI---- 296 (447)
Q Consensus 234 ----~~-g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~----~~~~~~~~~g-~~~~~~~a~~~~~~~---- 296 (447)
.. ..++++.|+||.+|++|.|+ ||++. ++++++.+.. ... . ...+ +.+.+.++..++...
T Consensus 226 ~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~~l~~ 302 (394)
T 2ay1_A 226 RLIASRIPEVLIAASCSKNFGIYRERT-GCLLALCADAATRELAQGAMAFLNR-Q-TYSFPPFHGAKIVSTVLTTPELRA 302 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCCHHHHHHHHHHHSHHHHH
T ss_pred HHHhhcCCCEEEEEeccCCCcCcCCcc-ceEEEEeCCHHHHHHHHHHHHHHHh-h-hcCCCChHHHHHHHHHhcChHHHH
Confidence 11 34688999999999999999 88876 6665544322 211 1 1222 333343334344332
Q ss_pred ---CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 297 ---PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 297 ---~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+++....+++.++++++.+.|++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (394)
T 2ay1_A 303 DWMAELEAVRSGMLRLREQLAGELRDLS 330 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2345566677888899999998753
No 159
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.93 E-value=4.4e-25 Score=219.40 Aligned_cols=286 Identities=14% Similarity=0.073 Sum_probs=187.8
Q ss_pred HHHHHHHHHHhC-------C-CeEEEeCChHHHHHHHHHHhcCCCC----eEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 102 LNLSRQMAALEG-------T-EAAYCTASGMSAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 102 ~~l~~~ia~l~g-------~-~~~~~tsggt~A~~~al~~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
.++|+.+|++++ . +.+++|+|+++|+.+++++++++|| +|+++.|+|+++...+. ..|.++..
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~-----~~g~~~~~ 145 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETT-----YVRSGMYK 145 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHH-----TTCBTTEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHH-----HcCCeEEE
Confidence 689999999987 3 4799999999999999999999999 99999999999988773 24666555
Q ss_pred eCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCcc--CCCCeEEEeCCCcc
Q 013210 170 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA--RLGADVVVHSISKF 247 (447)
Q Consensus 170 v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~--~~g~di~~~S~sK~ 247 (447)
++.+ .+. +..+++++|++++||||||.+++ +|++.++.+++++|+|++|..-...+. ..+.++++.|+||.
T Consensus 146 ~~~d-~~~----l~~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~ 218 (391)
T 3bwn_A 146 WEGD-AWG----FDKKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKI 218 (391)
T ss_dssp EEEE-STT----CCCCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHH
T ss_pred ecCC-HHH----cCCCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhh
Confidence 5443 222 22457899999999999999986 454422333499999999942111122 24688999999999
Q ss_pred ccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-----------CCcHHHHHHHHHHHHHHHHH
Q 013210 248 ISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-----------IPHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 248 ~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-----------~~~l~~~~~~~~~~~~~l~~ 315 (447)
+|++|.|+ ||++. ++++++.+...+... ....+.+.+.++..++.. .+++....+.+.++++.+.+
T Consensus 219 ~g~~GlRi-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (391)
T 3bwn_A 219 TGHAGSRI-GWALVKDKEVAKKMVEYIIVN-SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLRE 296 (391)
T ss_dssp HSCGGGCE-EEEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccce-EEEEecCHHHHHHHHHHhccc-ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 89886 889988887765521 123333444444444432 24466667778999999999
Q ss_pred HHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccc
Q 013210 316 RMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 394 (447)
Q Consensus 316 ~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~ 394 (447)
.|++++. .+..|. ....++ ... .....|.++++.+++.+ .+...|.. .| +.+..|..+
T Consensus 297 ~L~~~~~~~~~~p~-~~~~~f--~~~---~~~~~g~~~~~~~~~~~---~~~~~l~~---~g-V~v~pg~~f-------- 355 (391)
T 3bwn_A 297 VVKESDAFTLPKYP-EAFCNY--FGK---SLESYPAFAWLGTKEET---DLVSELRR---HK-VMSRAGERC-------- 355 (391)
T ss_dssp HHHTCSSEECCCCC-CEEETT--TTE---EECCCCSEEEEEESSSC---CHHHHHHH---TT-EECEEGGGG--------
T ss_pred HHHhCCCcccccCC-cccccc--ccc---cCCCcceEEEecCCcHH---HHHHHHHH---CC-EEEccCCCC--------
Confidence 9998743 333221 000000 000 00023558899987422 23333433 23 465555221
Q ss_pred ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 395 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
|..++.+|||++ . .++.++.+.++|.++
T Consensus 356 --------------g~~~~~iRis~~-~--~~e~i~~~~~~L~~~ 383 (391)
T 3bwn_A 356 --------------GSDKKHVRVSML-S--REDVFNVFLERLANM 383 (391)
T ss_dssp --------------TCCTTEEEEESC-S--CHHHHHHHHHHHHSC
T ss_pred --------------CCCCCEEEEEec-C--CHHHHHHHHHHHHHH
Confidence 123578999999 5 455566666666554
No 160
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.93 E-value=7.4e-25 Score=216.47 Aligned_cols=162 Identities=18% Similarity=0.156 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHH
Q 013210 102 LNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMV 178 (447)
Q Consensus 102 ~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 178 (447)
+.+++.+++++|+ +.+++|+||++|+.++++++ +||+|+++.++|+++...+. .... .|.++.++ .|+++|
T Consensus 61 ~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~-~g~~~~~v--~d~~~l 134 (374)
T 2aeu_A 61 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCKI-VNAKYFES--DKVGEI 134 (374)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHH-TTCEEEEE--SCHHHH
T ss_pred HHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHH-cCcEEEEe--CCHHHH
Confidence 5677777888898 77999999999999999987 89999999999887655432 2223 68888888 689999
Q ss_pred HHhhccCCceE-EEEEcCCCCCc-cccCHHHHHHHHHhcCCEEEEeCCCCCCC----CC--ccCCCCeEEEeCCCccccC
Q 013210 179 NSAIVQGRTKV-LYFESISNPTL-AVANIPELSRLAHDKGVTVVVDNTFSPLV----LS--PARLGADVVVHSISKFISG 250 (447)
Q Consensus 179 ~~~i~~~~t~l-V~i~~~~NptG-~v~~l~~I~~la~~~gi~livD~~~~~~~----~~--~~~~g~di~~~S~sK~~g~ 250 (447)
+++ ++++++ |++++|+||+| .+.++++|.++|++||+++|+|++|+.+. .. +..+++|+++.|+||++++
T Consensus 135 ~~~--~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g 212 (374)
T 2aeu_A 135 LNK--IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG 212 (374)
T ss_dssp HTT--CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred Hhc--CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence 887 568999 99999999999 88899999999999999999999994332 11 3445789999999999875
Q ss_pred CCCeeEEEEEcChHHHHHHHHHhh
Q 013210 251 GADIIAGAVCGPANLVNSMMDLHQ 274 (447)
Q Consensus 251 ~g~~igG~l~~~~~~~~~l~~~~~ 274 (447)
.++ ||+++++++++.+...+.
T Consensus 213 --~~~-G~~~~~~~~~~~l~~~~~ 233 (374)
T 2aeu_A 213 --PRG-GLLAGKKELVDKIYIEGT 233 (374)
T ss_dssp --CSC-EEEEEEHHHHHHHHHHHH
T ss_pred --cce-EEEEECHHHHHHHHHhhc
Confidence 355 999999999988877654
No 161
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.93 E-value=2.5e-24 Score=215.30 Aligned_cols=214 Identities=13% Similarity=0.121 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHh-C-------CCeEEE--eCChHHHHHHHH--HHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 101 VLNLSRQMAALE-G-------TEAAYC--TASGMSAISSVL--MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 101 ~~~l~~~ia~l~-g-------~~~~~~--tsggt~A~~~al--~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
..++++.+|+++ + .+.+++ |+||++|+++++ ..++.+||+|+++.|+|+++...+. ..|.++.
T Consensus 75 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~ 149 (412)
T 1yaa_A 75 LPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE-----NQGLKTA 149 (412)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHH-----TTTCCEE
T ss_pred cHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHH-----HcCceEE
Confidence 468999999887 3 467999 999999999984 3445789999999999999987763 2577777
Q ss_pred EeCC-------CCHHHHHHhhccC--CceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013210 169 FVDI-------SDHEMVNSAIVQG--RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----- 231 (447)
Q Consensus 169 ~v~~-------~d~~~l~~~i~~~--~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~----- 231 (447)
.++. .|+++|++++++. .+.++++++|+||||.+.+ +++|+++|++||+++|+|++|..+.+.
T Consensus 150 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 229 (412)
T 1yaa_A 150 TYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKD 229 (412)
T ss_dssp EEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHH
T ss_pred EEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccch
Confidence 7765 1899999988432 2455566999999999986 567899999999999999999665432
Q ss_pred --cc-C---C-C---CeEEEeCCCccccCCCCeeEEEEE--c-----ChH----HHHHHHHHhhhhhhhcCCCccHHHHH
Q 013210 232 --PA-R---L-G---ADVVVHSISKFISGGADIIAGAVC--G-----PAN----LVNSMMDLHQGALMLLGPTMNPKVAF 290 (447)
Q Consensus 232 --~~-~---~-g---~di~~~S~sK~~g~~g~~igG~l~--~-----~~~----~~~~l~~~~~~~~~~~g~~~~~~~a~ 290 (447)
+. . . . .++++.|+||.+|++|.|+ ||++ + +++ +++.+....... ...++.+.+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glri-G~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~a~~ 307 (412)
T 1yaa_A 230 AYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV-GCFHLALTKQAQNKTIKPAVTSQLAKIIRSE-VSNPPAYGAKIVA 307 (412)
T ss_dssp THHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE-EEEEEECCSCTTHHHHHHHHHHHHHHHHHTT-TSSCCHHHHHHHH
T ss_pred hHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcc-eEEEEEecCCCCCHHHHHHHHHHHHHHHhhc-cCCCChHHHHHHH
Confidence 11 1 1 2 5789999999999889999 8887 6 555 666666533211 1122333333443
Q ss_pred HHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 291 ELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 291 ~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.++... +++....+++.++++++.+.|++++
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1yaa_A 308 KLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG 345 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344332 2355566778889999999998765
No 162
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.93 E-value=6e-25 Score=223.97 Aligned_cols=289 Identities=18% Similarity=0.153 Sum_probs=197.7
Q ss_pred chHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHh----cCCCC-----eEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 99 PTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQL----CSSGG-----HVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l----~~~gd-----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
....++++.+++++|.+.. ++|+||++|+.++++++ .++|| +|+++.+.|+++...+. ..|.+++
T Consensus 107 ~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~-----~~G~~vv 181 (474)
T 1wyu_B 107 RLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS-----MAGYQVR 181 (474)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH-----HTTCEEE
T ss_pred HHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHH-----HCCCEEE
Confidence 4568899999999998764 57899999999877654 35777 99999999998887762 3688998
Q ss_pred EeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccc-cCHHHHHHHHHhcCCEEEEeCCCCCC---CCCccCCCCeE
Q 013210 169 FVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTFSPL---VLSPARLGADV 239 (447)
Q Consensus 169 ~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~~~~---~~~~~~~g~di 239 (447)
.++.+ |+++|++++ +++|++|++++| ||+|.+ .++++|+++|++||+++|+|++|... ..++..+++|+
T Consensus 182 ~v~~~~~~~~d~~~L~~~i-~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di 259 (474)
T 1wyu_B 182 EIPSGPEGEVDLEALKREL-GPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDV 259 (474)
T ss_dssp EECBCTTSSBCHHHHHHHC-STTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSE
T ss_pred EecCCCCCCcCHHHHHHhh-CCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcE
Confidence 88875 899999999 778999999998 689999 69999999999999999999999322 22344558999
Q ss_pred EEeCCCccccCC-C---CeeEEEEEcChHHHHHHHH-Hh--hh---------------hhhhcCCCccHHHHHHHHcc--
Q 013210 240 VVHSISKFISGG-A---DIIAGAVCGPANLVNSMMD-LH--QG---------------ALMLLGPTMNPKVAFELSER-- 295 (447)
Q Consensus 240 ~~~S~sK~~g~~-g---~~igG~l~~~~~~~~~l~~-~~--~~---------------~~~~~g~~~~~~~a~~~~~~-- 295 (447)
++.|+||+++++ | .++ |+++.++++++.+.. .. .+ .....++.....+++..+..
T Consensus 260 ~~~s~~K~~~~p~g~gG~~~-G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g 338 (474)
T 1wyu_B 260 VHLNLHKTFTVPHGGGGPGS-GPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG 338 (474)
T ss_dssp EECCTTTTTCCCCTTSCCCC-CCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCccccccCCCCCCCCe-EEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH
Confidence 999999999866 3 366 899988887665531 00 00 00011222223333333321
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013210 296 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 375 (447)
Q Consensus 296 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~ 375 (447)
.+.+.+..++..++++++.+.|++.+.++.+++ + ....+++.++.......+.+.|...
T Consensus 339 ~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~--------------~~~~~~~~~~~~~~~~~l~~~L~~~--- 397 (474)
T 1wyu_B 339 LEGLKKAAALAVLNARYLKELLKEKGYRVPYDG----P--------------SMHEFVAQPPEGFRALDLAKGLLEL--- 397 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCS----S--------------CCSCEEEBCSTTCCHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCC----C--------------cceEEEEEcCCCCCHHHHHHHHHHC---
Confidence 234556677788999999999988755543222 0 1101344443222355677777652
Q ss_pred ccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 376 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 376 g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
|+ .+. + ... + ....+.+|||++ ..++++.++.+.++|+++.
T Consensus 398 Gi-~~~-~----------~~~----~-------~~~~~~lRis~~-~~~t~e~id~~~~~L~~~~ 438 (474)
T 1wyu_B 398 GF-HPP-T----------VYF----P-------LIVKEALMVEPT-ETEAKETLEAFAEAMGALL 438 (474)
T ss_dssp TC-CCC-E----------ESC----S-------TTSTTCEEECCC-TTSCHHHHHHHHHHHHHHH
T ss_pred Cc-ccc-c----------ccc----c-------cccCCEEEEEee-cCCCHHHHHHHHHHHHHHH
Confidence 32 221 1 000 0 012478999999 7777777888888877653
No 163
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.93 E-value=3.3e-24 Score=214.20 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=158.8
Q ss_pred CccccCCCCchHHHHHHHHHHHh-CC-------CeE--EEeCChHHHHHHHH---HHhcCCCCeEEEeCCCchhHHHHHH
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALE-GT-------EAA--YCTASGMSAISSVL---MQLCSSGGHVVAARTLYGGTHALLT 156 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~-g~-------~~~--~~tsggt~A~~~al---~~l~~~gd~Vi~~~~~y~~~~~~~~ 156 (447)
.+.|+. .....++++.+++++ |. +.+ ..|.+|++|+.++. +.++++||+|+++.|.|+++...+.
T Consensus 72 ~~~y~~--~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~ 149 (409)
T 4eu1_A 72 NMDYAP--VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFA 149 (409)
T ss_dssp CCCCCC--TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHH
T ss_pred cccCCC--CCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH
Confidence 344543 233368999999975 53 345 45999999998764 3456789999999999999987773
Q ss_pred hhcCcccCeeEEEeCCC-------CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCC
Q 013210 157 HFFPRACNITTTFVDIS-------DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNT 224 (447)
Q Consensus 157 ~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~ 224 (447)
..|.++..++.. |+++|++++++ ++++++++++|+||||.+.+ +++|+++|++||+++|+|++
T Consensus 150 -----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~ 224 (409)
T 4eu1_A 150 -----KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMA 224 (409)
T ss_dssp -----HTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -----HcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecc
Confidence 268888888751 89999998842 35677778999999999997 45699999999999999999
Q ss_pred CCCCCCCc------------cCCCCeEEEeCCCccccCCCCeeEEEE---EcChH----HHHHHHHHhhhhhhhcCCCcc
Q 013210 225 FSPLVLSP------------ARLGADVVVHSISKFISGGADIIAGAV---CGPAN----LVNSMMDLHQGALMLLGPTMN 285 (447)
Q Consensus 225 ~~~~~~~~------------~~~g~di~~~S~sK~~g~~g~~igG~l---~~~~~----~~~~l~~~~~~~~~~~g~~~~ 285 (447)
|..+.+.. ......+++.|+||.+|++|.|+ ||+ +.+++ +++.+....... ....+...
T Consensus 225 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ri-G~~~~v~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 302 (409)
T 4eu1_A 225 YQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRC-GALHISTASAEEAKRLVSQLALLIRPM-YNNPPLYG 302 (409)
T ss_dssp CTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHHHH-HSSCCHHH
T ss_pred ccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCc-eEEEEEeCCHHHHHHHHHHHHHHHhhh-cCCCChHH
Confidence 97665432 11245688999999999999999 885 56677 555555443311 12222333
Q ss_pred HHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 286 PKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 286 ~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+.++..++.. .+.+....+++.++++++.+.|++.+
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 345 (409)
T 4eu1_A 303 AWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG 345 (409)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344333332 12345566778999999999999875
No 164
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.93 E-value=2.5e-24 Score=220.71 Aligned_cols=287 Identities=11% Similarity=0.033 Sum_probs=191.9
Q ss_pred HHHHHHHHHHhCCC-------eEEEeCChHHHHHHHHHHhcCC--------CC-----eEEEeCCCchhHHHHHHhhcCc
Q 013210 102 LNLSRQMAALEGTE-------AAYCTASGMSAISSVLMQLCSS--------GG-----HVVAARTLYGGTHALLTHFFPR 161 (447)
Q Consensus 102 ~~l~~~ia~l~g~~-------~~~~tsggt~A~~~al~~l~~~--------gd-----~Vi~~~~~y~~~~~~~~~~~~~ 161 (447)
+++++.+++++|.+ ..++|+||++|+.+++.++..+ |+ +|+++.+.|.++...+.
T Consensus 98 ~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~----- 172 (502)
T 3hbx_A 98 NRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR----- 172 (502)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH-----
T ss_pred HHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH-----
Confidence 45667789999987 3567999999999999887554 76 89999999999877763
Q ss_pred ccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc------CCEEEEeCCCCCCC
Q 013210 162 ACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTFSPLV 229 (447)
Q Consensus 162 ~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~------gi~livD~~~~~~~ 229 (447)
..|+++++++.+ |+++|++++ +++|++|++++++||||.+.|+++|.++|+++ |+++|+|++|+.+.
T Consensus 173 ~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~ 251 (502)
T 3hbx_A 173 YFEVELKEVKLSEGYYVMDPQQAVDMV-DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFI 251 (502)
T ss_dssp HTTCEEEEECCBTTBCSCCHHHHHHHC-CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred HcCceeEEEecCCCcCcCCHHHHHHHH-hhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchh
Confidence 368888888753 899999999 78899999999999999999999999999999 99999999995432
Q ss_pred ----CC-----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh-------hhcCCCc--cHHHHHH
Q 013210 230 ----LS-----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL-------MLLGPTM--NPKVAFE 291 (447)
Q Consensus 230 ----~~-----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~-------~~~g~~~--~~~~a~~ 291 (447)
.. ....++|+++.|+||+++++.. +|++++.+++.+.........+. ...+... .....+.
T Consensus 252 ~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g-~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~ 330 (502)
T 3hbx_A 252 APFLYPELEWDFRLPLVKSINVSGHKYGLVYAG-IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYY 330 (502)
T ss_dssp HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS-CEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHH
T ss_pred hhhhCcccccccCCCCceEEEECcccccCCCCC-eEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHH
Confidence 11 1123799999999999965543 43344555554422211111000 0001111 1222233
Q ss_pred HHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHH
Q 013210 292 LSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLM 366 (447)
Q Consensus 292 ~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~ 366 (447)
++. +.+.+.+++++..+++++|.+.|++++ +++..+. + ..++++|.+++. .....+.
T Consensus 331 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~-----------------~~~~v~f~~~~~~~~~~~~l~ 392 (502)
T 3hbx_A 331 QLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKD-E-----------------GVPLVAFSLKDSSCHTEFEIS 392 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCS-S-----------------SSSEEEEEESSCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC-C-----------------CceEEEEEecCCCcCCHHHHH
Confidence 332 234567788889999999999999987 4665441 1 234899998742 1234677
Q ss_pred HHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 367 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 367 ~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+.|... | +.++.. ..|... .....+||+++ ...+.+.++.|.++|++
T Consensus 393 ~~L~~~---G-i~v~~~------~~p~~~--------------~~~~~lRisv~-~~~t~edid~li~~L~~ 439 (502)
T 3hbx_A 393 DMLRRY---G-WIVPAY------TMPPNA--------------QHITVLRVVIR-EDFSRTLAERLVIDIEK 439 (502)
T ss_dssp HHHHTT---T-CBCCEE------ECCTTC--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHhC---C-cEEeec------cCCccc--------------CCceEEEEEeC-CCCCHHHHHHHHHHHHH
Confidence 777753 3 233211 111110 12367999999 76555555555544443
No 165
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.93 E-value=1.6e-25 Score=219.52 Aligned_cols=278 Identities=11% Similarity=0.022 Sum_probs=187.4
Q ss_pred chHHHHHHHHHHHhCCC---eEEEeCCh-HHHHHHHHHHhcCC---CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 99 PTVLNLSRQMAALEGTE---AAYCTASG-MSAISSVLMQLCSS---GGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~~tsgg-t~A~~~al~~l~~~---gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
+..+++++.+++++|.+ .+++|+|+ ++|+.+++.+++.+ ||.|+++.++|.... .+ .. .| ++++++
T Consensus 48 ~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~-~~----~~-~g-~~~~v~ 120 (360)
T 1w23_A 48 EVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALK-EA----KL-LG-ETHIAA 120 (360)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHH-HH----HT-TS-EEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHHH-HH----HH-hC-CeEEee
Confidence 35789999999999975 58999998 99999999988765 456676666655422 22 23 68 887776
Q ss_pred CC------CHHHHHH-hhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC--CCccCCCCeEEEe
Q 013210 172 IS------DHEMVNS-AIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVH 242 (447)
Q Consensus 172 ~~------d~~~l~~-~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~--~~~~~~g~di~~~ 242 (447)
.+ |+++|++ ++ +++|++|++++|+||||.+.| +| +++||+++|+|++|+... .+... .|+++.
T Consensus 121 ~~~~~~~~d~~~l~~~~i-~~~~k~v~~~~~~nptG~~~~--~i---~~~~~~~li~D~a~~~~~~~~~~~~--~di~~~ 192 (360)
T 1w23_A 121 STKANSYQSIPDFSEFQL-NENDAYLHITSNNTIYGTQYQ--NF---PEINHAPLIADMSSDILSRPLKVNQ--FGMIYA 192 (360)
T ss_dssp ECGGGTSCSCCCGGGCCC-CTTEEEEEEESEETTTTEECS--SC---CCCCSSCEEEECTTTTTSSCCCGGG--CSEEEE
T ss_pred cccccCcCCccchHhhcc-CCCCCEEEEeCCCCCcceecc--cc---cccCCceEEEechhhcCCCCcCccc--CCEEEE
Confidence 42 6678888 78 778999999999999999987 33 338999999999994332 22222 389999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh--------hhcCCCccHH---HHHHHHccC--C-cHHHHHHHHHH
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL--------MLLGPTMNPK---VAFELSERI--P-HLGLRMKEHCH 308 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~--------~~~g~~~~~~---~a~~~~~~~--~-~l~~~~~~~~~ 308 (447)
|+||++|++| + |+++.++++++.+........ .....+.+.. ++..++..+ . .+....+++.+
T Consensus 193 s~sK~~~~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (360)
T 1w23_A 193 GAQKNLGPSG--V-TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEE 269 (360)
T ss_dssp ETTTTTSCTT--C-EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred EcccccCCCC--c-EEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999776 5 889888887765543221000 0111122222 122222221 1 35566778899
Q ss_pred HHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 309 RALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 309 ~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
+++++.+.|++++ . ....+ |. . ..+.+++|.+++......+++.|... | +.+..|.
T Consensus 270 ~~~~l~~~L~~~~~~~~~~~~-----~~----------~-~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~~~~~~-- 327 (360)
T 1w23_A 270 KAKIIYDTIDESNGFYVGHAE-----KG----------S-RSLMNVTFNLRNEELNQQFLAKAKEQ---G-FVGLNGH-- 327 (360)
T ss_dssp HHHHHHHHHHTTTTSSEESSC-----GG----------G-BCSSEEEEECSSHHHHHHHHHHHHHT---T-EESCBCC--
T ss_pred HHHHHHHHHHHccCcccccCC-----ch----------h-ccCcEEEEEcCCCccHHHHHHHHHHC---C-eeeecCC--
Confidence 9999999998876 2 22110 11 0 12349999998655567788887653 3 3333221
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. .++.||||++ ..++++.++.+.++|+++.
T Consensus 328 --------~---------------~~~~iRis~~-~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 328 --------R---------------SVGGCRASIY-NAVPIDACIALRELMIQFK 357 (360)
T ss_dssp --------T---------------TTCSEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred --------C---------------CCCeEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 0 1478999999 8888888999888887764
No 166
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.93 E-value=2.3e-24 Score=221.98 Aligned_cols=282 Identities=13% Similarity=0.104 Sum_probs=195.6
Q ss_pred HHHHHHHHHHhCCC----eE--EEeCChHHHHHHHHHHhcCCC--------CeEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 102 LNLSRQMAALEGTE----AA--YCTASGMSAISSVLMQLCSSG--------GHVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 102 ~~l~~~ia~l~g~~----~~--~~tsggt~A~~~al~~l~~~g--------d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
+++++.+++++|.+ .+ ++|+||++|+.++++++..+| |+|+++.+.|+++...+. ..|.++
T Consensus 142 ~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~-----~~G~~v 216 (514)
T 3mad_A 142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQ-----YFGIKL 216 (514)
T ss_dssp HHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHH-----HHTCEE
T ss_pred HHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHH-----HcCCee
Confidence 34566678888876 56 999999999999999987665 899999999999887773 258888
Q ss_pred EEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC-------------
Q 013210 168 TFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV------------- 229 (447)
Q Consensus 168 ~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~------------- 229 (447)
+.++.+ |+++|++++ ++++++|++++|+||+|.+.|+++|.++|++||+++|+|++|+.+.
T Consensus 217 ~~v~~~~~~~~d~~~Le~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~ 295 (514)
T 3mad_A 217 VRTPLDADYRADVAAMREAI-TPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP 295 (514)
T ss_dssp EEECBCTTSCBCHHHHHHHC-CTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCC
T ss_pred EEeeeCCCCCCCHHHHHHHh-ccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCc
Confidence 888876 999999999 7789999999999999999999999999999999999999996542
Q ss_pred CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh-hh-------hhhcCCCcc--HHHHHHHHcc--CC
Q 013210 230 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-GA-------LMLLGPTMN--PKVAFELSER--IP 297 (447)
Q Consensus 230 ~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-~~-------~~~~g~~~~--~~~a~~~~~~--~~ 297 (447)
++....++|+++.|+||+++++ .++ |+++.+++.......... .+ ....|.... ..++++++.. ..
T Consensus 296 ~~~~~~g~d~~~~s~~K~l~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~ 373 (514)
T 3mad_A 296 FDFRLEGVTSVSADTHKYGYGA-KGT-SVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE 373 (514)
T ss_dssp CSTTSTTCCEEEECTTTTTCCC-SSC-EEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhccCCC-CCe-EEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence 2233448999999999996533 345 777665544332211000 00 001222222 1223333322 23
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 376 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g 376 (447)
.+.+..++..++++++.+.|++.+ .++..+. .++++|...+.. ...+.+.|... |
T Consensus 374 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--------------------~~~~~~~~~~~~-~~~l~~~L~~~---G 429 (514)
T 3mad_A 374 GYLDATRRILQAADRLKAGVRAIPSLKILGDP--------------------LWVIAVASDELN-IYQVMEEMAGR---G 429 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--------------------SSEEEEECSSSC-HHHHHHHHHTT---T
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--------------------eEEEEEeCCCCC-HHHHHHHHHhc---C
Confidence 456677888999999999999873 4554332 238888775332 45677777752 3
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC----CCCHHHHHHHHHHHHHHhhhc
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY----LGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~----~~~~~~~i~~l~~al~~~~~~ 442 (447)
+.+ .| . + .++.+|++++. .+++++.++.|.++++++...
T Consensus 430 -i~v-~g----------~--------------~-~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 430 -WRL-NG----------L--------------H-RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp -CBC-EE----------E--------------T-TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred -CEe-cc----------C--------------C-CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 222 11 0 0 13569999871 256677777777777776543
No 167
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.93 E-value=9.2e-24 Score=211.59 Aligned_cols=326 Identities=14% Similarity=0.134 Sum_probs=190.2
Q ss_pred cccccCCH-HHHHHhhcCCC--CCCCCCccccCCCCchHHH-HHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCe
Q 013210 66 ATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGH 140 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~ 140 (447)
..+..|.+ +.+.+.+...+ +++.+.|..+.......++ +++.+++++|.+.+ ++++||++|+..++++++++||+
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~ 120 (425)
T 3ecd_A 41 ENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDT 120 (425)
T ss_dssp CCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCE
T ss_pred cCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCE
Confidence 33443444 55555554333 3333333333333233344 45889999999887 45999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh
Q 013210 141 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 214 (447)
Q Consensus 141 Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~ 214 (447)
|+++.++|++.............++.+..++.+ |+++|++++.++++++|++++|+|| ...++++|.++|++
T Consensus 121 Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~ 198 (425)
T 3ecd_A 121 VLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADS 198 (425)
T ss_dssp EEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHH
T ss_pred EEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHH
Confidence 999999998732111111001023355555544 8999999994468999999998884 67899999999999
Q ss_pred cCCEEEEeCCC-CCCC-----CCccCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHH
Q 013210 215 KGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK 287 (447)
Q Consensus 215 ~gi~livD~~~-~~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~ 287 (447)
||+++|+|++| .++. ..+.. .+|+++.|+||++++ .+. |+++.+ +++.+.+....... ..++...+.
T Consensus 199 ~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g--~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 272 (425)
T 3ecd_A 199 VGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRG--PRG-GFVLTNDEEIAKKINSAVFPG--LQGGPLMHV 272 (425)
T ss_dssp HTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCC--CSC-EEEEESCHHHHHHHHHHHC-------CCCHHH
T ss_pred cCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCC--CCc-EEEEeCCHHHHHHHHhhhCcc--ccCCccHHH
Confidence 99999999996 2222 12222 378999999999954 354 998887 56777666544321 122222222
Q ss_pred -HH-HHHHc-cC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHH
Q 013210 288 -VA-FELSE-RI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKA 362 (447)
Q Consensus 288 -~a-~~~~~-~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~ 362 (447)
.+ ..++. .. +.+....+++.++++++.+.|++.+..+..|. +.+.++++.++. ....
T Consensus 273 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~ 334 (425)
T 3ecd_A 273 IAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGG------------------TDNHLLLVDLRPKGLKG 334 (425)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CSSSEEEEECGGGTCCH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCC------------------CCceEEEEEeCCCCCCH
Confidence 22 22222 22 34556778889999999999998777655332 235588888752 1124
Q ss_pred HHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC----HHHHHHHHHHHHHH
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQRWSQFEKALSR 438 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~----~~~~i~~l~~al~~ 438 (447)
..+.+.|... | +.+..+.. |.... .....+.+|++++ ..+ +++.++.+.++|++
T Consensus 335 ~~~~~~l~~~---g-i~v~~~~~------p~~~~-----------~~~~~~~iRi~~~-~~~~~~~~~e~i~~~~~~l~~ 392 (425)
T 3ecd_A 335 AQVEQALERA---G-ITCNKNGI------PFDPE-----------KPTITSGIRLGTP-AGTTRGFGAAEFREVGRLILE 392 (425)
T ss_dssp HHHHHHHHHT---T-EECEECCC------TTCSS-----------CTTTCSEEEEESH-HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---C-CEeccccc------CCCCC-----------CCCCccceeccch-hheeccCCHHHHHHHHHHHHH
Confidence 4555566542 3 44443321 11100 0112467999965 422 36666666666554
Q ss_pred h
Q 013210 439 M 439 (447)
Q Consensus 439 ~ 439 (447)
+
T Consensus 393 ~ 393 (425)
T 3ecd_A 393 V 393 (425)
T ss_dssp H
T ss_pred H
Confidence 4
No 168
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.92 E-value=1.7e-24 Score=217.81 Aligned_cols=290 Identities=11% Similarity=0.121 Sum_probs=189.3
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc---C----CCCeEEEeCCCchhHHHHHHhhcC-------
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC---S----SGGHVVAARTLYGGTHALLTHFFP------- 160 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~---~----~gd~Vi~~~~~y~~~~~~~~~~~~------- 160 (447)
..+...++++.++++++ .+.++||+||++|++++++.+. + +|++|+++.+.|+++.........
T Consensus 84 ~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~ 163 (429)
T 1s0a_A 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHS 163 (429)
T ss_dssp ECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGG
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcc
Confidence 45667889999999994 5779999999999999998653 2 589999999999876443211100
Q ss_pred ----cccCeeEEEeC---------CCCHHHHHHhhcc--CCceEEEEEcC-CCCCccccC----HHHHHHHHHhcCCEEE
Q 013210 161 ----RACNITTTFVD---------ISDHEMVNSAIVQ--GRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVV 220 (447)
Q Consensus 161 ----~~~g~~~~~v~---------~~d~~~l~~~i~~--~~t~lV~i~~~-~NptG~v~~----l~~I~~la~~~gi~li 220 (447)
...+.....++ ..|+++|++++++ +++++|+++++ +||+|.+.+ +++|.++|++||+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li 243 (429)
T 1s0a_A 164 LWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLI 243 (429)
T ss_dssp GGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEE
T ss_pred cccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 00123333332 1378999998832 57888888887 899998877 9999999999999999
Q ss_pred EeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhh----hhhhhcCCCccHHH
Q 013210 221 VDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMNPKV 288 (447)
Q Consensus 221 vD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~----~~~~~~g~~~~~~~ 288 (447)
+||+|+++... ......|++ |+||.+++ | .++ |++++++++++.+..... ...+..++.+.+.+
T Consensus 244 ~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-G~~~i-G~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a 319 (429)
T 1s0a_A 244 ADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG-GTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319 (429)
T ss_dssp EECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-SSSCC-EEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHH
T ss_pred EeehhhCCcccchHHHhhhcCCCCCEE--EecccccC-CCccc-eEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHH
Confidence 99999654321 112345665 57899995 7 788 899999998887764210 01112223333333
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 289 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 289 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
+..++..+.. ....++..++++++.+.|++.+. .|.+...+ +.|.++++.++.......+.+.
T Consensus 320 ~~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~-------------~~g~~~~~~~~~~~~~~~l~~~ 382 (429)
T 1s0a_A 320 ANASLAILES-GDWQQQVADIEVQLREQLAPARD---AEMVADVR-------------VLGAIGVVETTHPVNMAALQKF 382 (429)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHHHHGGGGG---CTTEEEEE-------------EETTEEEEEESSCBCHHHHHHH
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHhc---CCCEEEEE-------------EeeEEEEEEECCcccHHHHHHH
Confidence 3333332211 13456677888899999876421 11110000 2456899998742224566666
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
|... | +.++.. .+.||||++ ...+++.++.+.++|+++.
T Consensus 383 l~~~---G-i~v~~~----------------------------~~~iRis~~-~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 383 FVEQ---G-VWIRPF----------------------------GKLIYLMPP-YIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp HHHT---T-EECCCB----------------------------TTEEEECCC-TTCCHHHHHHHHHHHHHHT
T ss_pred HHHC---C-CEEecc----------------------------CCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 6542 3 232210 267999999 7788888888888887653
No 169
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.92 E-value=2.2e-24 Score=211.42 Aligned_cols=290 Identities=16% Similarity=0.095 Sum_probs=194.2
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCe--EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~--Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.++...++++.+|+++|.+..++++||++|+.+++++++.+||+ |+++.+.|....... ... ...|.++..++.+
T Consensus 46 ~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~-~~~g~~~~~v~~~~ 123 (359)
T 3pj0_A 46 NGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLK-ELQQITPLLLGTAN 123 (359)
T ss_dssp BSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHH-HHHCCEEEECSCTT
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHH-HhcCceEEecCCcC
Confidence 35778999999999999988888899999999999998888886 444545443332110 000 1147788888764
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCC-ccccCHHH---HHHHHHhcCCEEEEeCCCCCCC-----CCcc--CCCCeE
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPT-LAVANIPE---LSRLAHDKGVTVVVDNTFSPLV-----LSPA--RLGADV 239 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~Npt-G~v~~l~~---I~~la~~~gi~livD~~~~~~~-----~~~~--~~g~di 239 (447)
|+++|+++ .+++++|++++|+||+ |.+.|+++ |.++|++||+++|+|++|.... ..+. ..+.|+
T Consensus 124 ~~~d~~~l~~~--~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~ 201 (359)
T 3pj0_A 124 QLLTIDDIKSL--REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDS 201 (359)
T ss_dssp SCCCHHHHHTC--SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSE
T ss_pred CCcCHHHHHhc--cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCE
Confidence 89999886 5689999999999998 78887555 4999999999999999973221 1221 236789
Q ss_pred EEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCC-CccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013210 240 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP-TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~-~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 318 (447)
++.|+||++++++ ||++++++++++.++..+... ..+. ...+.++.. ...++...++++++.++++++.+.|+
T Consensus 202 ~~~s~sK~~~~~~---gg~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~a~-~~~l~~~~~~~~~~~~~~~~l~~~L~ 275 (359)
T 3pj0_A 202 VYVSFYKGIGGIA---GAILAGNDDFVQEAKIWKRRY--GGDLISLYPYILSA-DYYFEKRIGKMAEYFEAAKGLAERFN 275 (359)
T ss_dssp EEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHT--TCCCSCCHHHHHHH-HHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCcc---eEEEECCHHHHHHHHHHHHHh--CCCcchhHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999999998763 488899999999887654411 1111 112222111 11222223456677888899999999
Q ss_pred hCC-Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCcccccccccc
Q 013210 319 KLG-LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 394 (447)
Q Consensus 319 ~~~-~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~ 394 (447)
+++ .++. .|. .++++++.++. ......+.+.|... | +.+..|... .
T Consensus 276 ~~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~---G-V~v~~g~~~------~- 325 (359)
T 3pj0_A 276 SCSGVKTVPEVP-------------------VSNMFHVYFENSADEIGAILTKIQDET---G-VGISGYLQE------K- 325 (359)
T ss_dssp TSTTEEEESSSC-------------------SSSEEEEEESSCHHHHHHHHHHHHHHH---C-EECCSCCEE------E-
T ss_pred hCCCceeeccCC-------------------cceEEEEEecCccchhHHHHHHHHHhc---C-cEecCCccc------c-
Confidence 874 4553 232 34578888863 23356777777653 3 455544211 0
Q ss_pred ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 395 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
....+++|++++ ........+++.++++++.+
T Consensus 326 --------------~~~~~~~r~~i~-~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 326 --------------SADVCAFEVSVG-DAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp --------------ETTEEEEEEECC-TTGGGSCHHHHHHHHHHHHH
T ss_pred --------------CCCceEEEEEec-CccccCCHHHHHHHHHHHHh
Confidence 012367999999 76555556677777766653
No 170
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.92 E-value=2.5e-23 Score=206.53 Aligned_cols=302 Identities=15% Similarity=0.111 Sum_probs=202.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-------cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
.+...++++.+|+++|.+.+++++||++|+++++.++ +++||+|+++.++|+++...+. ..|.+++++
T Consensus 33 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~-----~~g~~~~~~ 107 (390)
T 3b8x_A 33 GEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQ-----QYGLRVKFV 107 (390)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEE
T ss_pred ChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEE
Confidence 5778999999999999999999999999999999998 7789999999999999988773 268888888
Q ss_pred CCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC--eEEE
Q 013210 171 DIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVV 241 (447)
Q Consensus 171 ~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~--di~~ 241 (447)
+.+ |+++|++++ ++++++|+++ |++|.+.|+++|.++|+++|+++|+|++|+ +...+...+|+ |+.+
T Consensus 108 ~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~ 183 (390)
T 3b8x_A 108 DIDINTLNIDIESLKEAV-TDSTKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGT 183 (390)
T ss_dssp CBCTTTCSBCHHHHHHHC-CTTEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEE
T ss_pred ecCccccCcCHHHHHHHh-CcCCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEE
Confidence 764 899999999 7789999986 367888999999999999999999999994 44344444555 5555
Q ss_pred eCC--CccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhh-h------------------------hcCCC--ccHHHHHH
Q 013210 242 HSI--SKFISGGADIIAGAVCGPA-NLVNSMMDLHQGAL-M------------------------LLGPT--MNPKVAFE 291 (447)
Q Consensus 242 ~S~--sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~-~------------------------~~g~~--~~~~~a~~ 291 (447)
+|+ +|.+++ | .||+++.++ ++.+.+...+.+.. . ..|.. +....++.
T Consensus 184 ~s~~~~k~~~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~ 260 (390)
T 3b8x_A 184 FSSFYSNHIAT-M--EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAI 260 (390)
T ss_dssp EECCTTSSSCS-S--SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHH
T ss_pred EEccCCCCCcc-C--CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHH
Confidence 443 343432 2 258888765 67776765543210 0 01211 34444444
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHH
Q 013210 292 LSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNY 368 (447)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~ 368 (447)
.+..++.+.+..++..++++++.+.|++++. ++..+. ... ...++++.++. ......+.+.
T Consensus 261 ~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~---------------~~~~~~i~~~~~~~~~~~~l~~~ 324 (390)
T 3b8x_A 261 GIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQET-GES---------------SWFGFSFIIKKDSGVIRKQLVEN 324 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC-SBC---------------CCCEEEEEECTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC-CCc---------------ccEEEEEEecCcCcccHHHHHHH
Confidence 4444566677778888999999999988743 443221 010 11246667762 1124567777
Q ss_pred hhcccccccccccccCccccccc-cccc--c---CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSC-SGSS--T---SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~-~a~~--~---~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
|... | +.++.....+.... |... . ...++..+.. ..+.||||++ ...++++++.+.++|
T Consensus 325 L~~~---g-I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~-~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 325 LNSA---G-IECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYL----DKNGLFVGNH-QIELFDEIDYLREVL 389 (390)
T ss_dssp HHHT---T-BCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHH----HHHEEEEECC-SSCCHHHHHHHHHHT
T ss_pred HHHC---C-CCeeeecCCchhhcchhhhcCCCCCcCCChHHHHH----hcCEEEeeCC-CCCCHHHHHHHHHhh
Confidence 7653 3 55555211111111 1110 0 1112211111 1367999999 999999999988775
No 171
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.92 E-value=1.4e-24 Score=219.13 Aligned_cols=290 Identities=14% Similarity=0.166 Sum_probs=187.9
Q ss_pred ccCCCCchHHHHHHHHHHHh--CC-CeEEEeCChHHHHHHHHHHh--cCCCCeEEEeCCCchhHHHHHHhhcCc------
Q 013210 93 YSRHFNPTVLNLSRQMAALE--GT-EAAYCTASGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPR------ 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~--g~-~~~~~tsggt~A~~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~------ 161 (447)
+.++..+...++++.+++++ +. +.++||+||++|+..+++.+ ..++++|++.++.|++...........
T Consensus 80 ~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 159 (439)
T 3dxv_A 80 ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADA 159 (439)
T ss_dssp SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC---------
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhc
Confidence 45566778899999999998 55 68999999999999999875 335678999999987765443211000
Q ss_pred ----ccCeeEEEeCCC----------CHHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEE
Q 013210 162 ----ACNITTTFVDIS----------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVV 220 (447)
Q Consensus 162 ----~~g~~~~~v~~~----------d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~li 220 (447)
.....+..++.+ |+++|+++++ .+++++|++++++|++|.+.+ +++|.++|++||+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li 239 (439)
T 3dxv_A 160 AKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVV 239 (439)
T ss_dssp ----CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEE
T ss_pred cccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 000112334443 5899999883 457899999999999999988 9999999999999999
Q ss_pred EeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHH
Q 013210 221 VDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS 293 (447)
Q Consensus 221 vD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~ 293 (447)
+||+|+++... ......|++ |+||.+++ |.|+ |++++++++++.+..... .... ++.+.+.++..++
T Consensus 240 ~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~ri-G~~~~~~~~~~~~~~~~~-~~t~-~~~~~~~aa~aal 313 (439)
T 3dxv_A 240 CDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GLPL-SAVIAPAEILDCASAFAM-QTLH-GNPISAAAGLAVL 313 (439)
T ss_dssp EECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSCC-EEEEEEHHHHTSCSSSSC-CTTT-TCHHHHHHHHHHH
T ss_pred EeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-Ccce-EEEEECHHHHhhhcCCCc-CCCc-ccHHHHHHHHHHH
Confidence 99999655321 112235655 78999995 8898 999999988876654322 1112 3333333333333
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe--------CCHHH
Q 013210 294 ERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM--------ETEEK 361 (447)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l--------~~~~~ 361 (447)
..++. ....+++.++.+++.+.|++. +.....+ +.|.++++.+ +....
T Consensus 314 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~ 373 (439)
T 3dxv_A 314 ETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIGDIR-------------------GRGLACGMELVCDRQSREPARAE 373 (439)
T ss_dssp HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEEEEETTTTEECHHH
T ss_pred HHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------EEEEEEEEEEecCccccCCCHHH
Confidence 32211 223455666666666666543 3211111 3577999988 44555
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
...+.+.|... | +.+..| +...+.+||+++ ...+++.++.+.++|++
T Consensus 374 ~~~~~~~l~~~---G-v~v~~~-------------------------~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~ 420 (439)
T 3dxv_A 374 TAKLIYRAYQL---G-LVVYYV-------------------------GMNGNVLEFTPP-LTITETDIHKALDLLDR 420 (439)
T ss_dssp HHHHHHHHHHH---T-EECEEE-------------------------STTSCEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---C-cEEeec-------------------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 67777777652 3 333322 112478999987 65555555554444443
No 172
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.92 E-value=4.6e-24 Score=216.34 Aligned_cols=324 Identities=10% Similarity=0.036 Sum_probs=205.8
Q ss_pred ccccccccCCH-HHHHHhhcCCCCCCCC--CccccCC--------CCchHHHHHHHHHHHhCCCe-EEEeCChH-HHHHH
Q 013210 63 EASATFTVMEP-ETMRRMFAGELGPDRD--FFIYSRH--------FNPTVLNLSRQMAALEGTEA-AYCTASGM-SAISS 129 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~~~~~--~~~~~r~--------~~~~~~~l~~~ia~l~g~~~-~~~tsggt-~A~~~ 129 (447)
++++|+..+.+ +.+....-..+.++.+ .+.+... .....+++++.+|+++|++. ++||+||| .++.+
T Consensus 86 ~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~ 165 (456)
T 2z67_A 86 SVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISL 165 (456)
T ss_dssp CEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHH
T ss_pred ccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHH
Confidence 45666666665 5555432222333322 2222211 22345679999999999865 89999999 56665
Q ss_pred HHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC---C-----CHHHHHHhh-c---cCCceEEEEEcC
Q 013210 130 VLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S-----DHEMVNSAI-V---QGRTKVLYFESI 195 (447)
Q Consensus 130 al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~---~-----d~~~l~~~i-~---~~~t~lV~i~~~ 195 (447)
++.++.. +|+.|+++.++|+++...+. ..|++++.++. + |+++|++++ . +.++.+|+++++
T Consensus 166 al~~~~~~~~~~~vi~~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~ 240 (456)
T 2z67_A 166 CLSAARKKYGSNVVIYPYASHKSPIKAVS-----FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLT 240 (456)
T ss_dssp HHHHHHHHHCCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred HHHHHHHhcCCCEEEEECCCcHHHHHHHH-----HcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 6666543 67789999999999877663 25888877764 2 899999998 3 247888889999
Q ss_pred CCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--Ccc---CC--CCeEEEeCCCccccCCCCeeEEEEEc-ChHHHH
Q 013210 196 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPA---RL--GADVVVHSISKFISGGADIIAGAVCG-PANLVN 267 (447)
Q Consensus 196 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~--~~~---~~--g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~ 267 (447)
|||+|.+.|+++|.++|+++|+++|+|++|+.... .+. .+ ++|+++.|+||++++| .++ |+++. ++++++
T Consensus 241 nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p-~g~-G~l~~~~~~~~~ 318 (456)
T 2z67_A 241 FFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-IGG-GLVYSTDAEFIK 318 (456)
T ss_dssp CCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-SSC-EEEEESCHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCC-CCe-EEEEEcCHHHHh
Confidence 99999999999999999999999999999854322 111 12 7999999999986644 235 88877 577777
Q ss_pred HHHHHhhhhhhhcCCC--ccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHH
Q 013210 268 SMMDLHQGALMLLGPT--MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLK 339 (447)
Q Consensus 268 ~l~~~~~~~~~~~g~~--~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~ 339 (447)
.+.... .|.. .....++.++. ....+.+..++..++++++.+.|++. +..+..|.
T Consensus 319 ~l~~~~------~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~----------- 381 (456)
T 2z67_A 319 EISLSY------PGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE----------- 381 (456)
T ss_dssp HHHTTS------CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-----------
T ss_pred hcCcCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-----------
Confidence 664321 1221 11222222222 22345667788899999999999886 44433221
Q ss_pred HHhccCCCcCcEEEEEe--CCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 013210 340 SMANKEYGFGGLLCLDM--ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 417 (447)
Q Consensus 340 ~~~~~~~g~g~~~~~~l--~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRi 417 (447)
++++|.+ ++. ...+.+.|... |+..+..........-..|. -...+.||+
T Consensus 382 ----------~~v~~~~~~~~~--~~~l~~~L~~~---gi~~~rv~~~~g~f~G~~~~-------------~~~~~~vr~ 433 (456)
T 2z67_A 382 ----------SPIASCISVNSD--PVEIAAKLYNL---RVTGPRGIKKTDHFGNCYLG-------------TYTHDYIVM 433 (456)
T ss_dssp ----------CSSEEEEECSSC--HHHHHHHHHHT---TEESCEEECTTCHHHHTCSS-------------CCSCCEEEE
T ss_pred ----------CeEEEEEecccH--HHHHHHHHHHc---CCCcceEEeecCcccccccc-------------ccCcchhhh
Confidence 2666776 442 23455555532 21111110000000000000 012478999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHh
Q 013210 418 SVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 418 S~g~~~~~~~~i~~l~~al~~~ 439 (447)
|++ ..+++++++.+.++|+++
T Consensus 434 s~~-~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 434 NAA-IGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp ECC-TTCCHHHHHHHHHHHHTC
T ss_pred hhh-cCCCHHHHHHHHHHHHHH
Confidence 999 889999999999988764
No 173
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.92 E-value=2.2e-23 Score=210.18 Aligned_cols=310 Identities=12% Similarity=0.102 Sum_probs=206.2
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh---------cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL---------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l---------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
.+...++++.+|+++|.+.+++++||++|+.++++++ +++||+|+++.++|+++...+. ..|.++.
T Consensus 61 ~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~ 135 (437)
T 3bb8_A 61 GRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTI-----QNGLIPV 135 (437)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHH-----HTTCEEE
T ss_pred ChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHHH-----HcCCEEE
Confidence 4678999999999999999999999999999999988 7889999999999999988773 2688888
Q ss_pred EeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeE
Q 013210 169 FVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADV 239 (447)
Q Consensus 169 ~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di 239 (447)
+++.+ |+++|++++ +++|++|++++ ++|...|+++|.++|+++|+++|+|++|+ +...+...++ .|+
T Consensus 136 ~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~ 211 (437)
T 3bb8_A 136 FVDVDIPTYNVNASLIEAAV-SDKTKAIMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGDI 211 (437)
T ss_dssp ECCEETTTTEECGGGHHHHC-CTTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSE
T ss_pred EEeccCccCCcCHHHHHHhc-CCCCeEEEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCceECCeecccccCE
Confidence 87754 789999999 77899999874 34556899999999999999999999994 4333443445 789
Q ss_pred EEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhhhhhh---------------------------------hcCC--C
Q 013210 240 VVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALM---------------------------------LLGP--T 283 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~~~~---------------------------------~~g~--~ 283 (447)
++.|++|.++.+|.+ ||+++.+++.+. .+...+..... ..|. .
T Consensus 212 ~~~s~~~~k~l~~g~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (437)
T 3bb8_A 212 GTVSFYPAKHITMGE-GGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLK 290 (437)
T ss_dssp EEEECSTTSSSCCSS-CEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCC
T ss_pred EEEECcCCcCCCCCC-eEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccC
Confidence 999988777777776 499988765543 33322210000 0111 1
Q ss_pred ccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcC-cEEEEEeCCH--
Q 013210 284 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFG-GLLCLDMETE-- 359 (447)
Q Consensus 284 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g-~~~~~~l~~~-- 359 (447)
+....+...+..++.+.+.+++..++++++.+.|++.+ ..+ .|...... ..+ ..+.+.+...
T Consensus 291 ~~~~~aa~~l~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~ 356 (437)
T 3bb8_A 291 ITDMQAACGLAQLERIEEFVEKRKANFKYLKDALQSCADFIE-LPEATENS-------------DPSWFGFPITLKEDSG 356 (437)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTTTEE-CCCCCTTE-------------ECCCSSEEEEECGGGS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc-cCCCCCCC-------------ceeeEEEEEEECCcCc
Confidence 23444433333345556667777888889999998873 333 33211000 001 1233334311
Q ss_pred HHHHHHHHHhhcccccccccccccCcccccccccccc-----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST-----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 360 ~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~-----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
.....+.+.|... | +.++.+....+...|.... ...++..... ..+.|||+++ ...++++++.+.+
T Consensus 357 ~~~~~l~~~L~~~---G-I~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~t~~di~~i~~ 427 (437)
T 3bb8_A 357 VSRIDLVKFLDEA---K-VGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRI----MNQTFWIGIY-PGLTHDHLDYVVS 427 (437)
T ss_dssp SCHHHHHHHHHHT---T-BCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHH----HHHEEEECCS-TTCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHC---C-CceeccCCcccccCchhhccCccccCCCcHHHHH----hcCEEEecCC-CCCCHHHHHHHHH
Confidence 1246677777753 3 5666664321111121100 0112211111 1357999999 9999999999999
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
+|+++.
T Consensus 428 ~l~~~~ 433 (437)
T 3bb8_A 428 KFEEFF 433 (437)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998764
No 174
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.92 E-value=5e-24 Score=213.07 Aligned_cols=244 Identities=17% Similarity=0.144 Sum_probs=159.1
Q ss_pred HHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-----CCHH
Q 013210 103 NLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHE 176 (447)
Q Consensus 103 ~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~ 176 (447)
.+++.+++++|.+.. +++++|++|+.+++++++++||+|+++.++|+++............+..+..++. .|++
T Consensus 75 ~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 154 (417)
T 3n0l_A 75 LAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYE 154 (417)
T ss_dssp HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHH
T ss_pred HHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHH
Confidence 455689999998775 6677789999999999999999999999999876542211110112444555554 3899
Q ss_pred HHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCC-----CccCCCCeEEEeCCCccccC
Q 013210 177 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL-----SPARLGADVVVHSISKFISG 250 (447)
Q Consensus 177 ~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~-----~~~~~g~di~~~S~sK~~g~ 250 (447)
+|++++.++++++|++++++| |.+.|+++|.++|++||+++|+|++| .+..+ .+.. ++|+++.|+||++++
T Consensus 155 ~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g 231 (417)
T 3n0l_A 155 KVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRG 231 (417)
T ss_dssp HHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCS
T ss_pred HHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCC
Confidence 999999436899999888776 88999999999999999999999997 22221 1111 479999999999953
Q ss_pred CCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHH-HHcc-C-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013210 251 GADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFE-LSER-I-PHLGLRMKEHCHRALIFARRMKKLGLKVLY 326 (447)
Q Consensus 251 ~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~-~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~ 326 (447)
.+ ||+++++ +++++.+........ ..+......++.. ++.. . +.+....++..++++++.+.|++.+..+..
T Consensus 232 --~~-~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 307 (417)
T 3n0l_A 232 --PR-GGIIMTNDEELAKKINSAIFPGI-QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVS 307 (417)
T ss_dssp --CS-CEEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred --CC-eeEEEECCHHHHHHHhhhhCCcc-cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceecc
Confidence 45 4999887 788888876544221 1122222222222 2222 2 345667778888999999999887665543
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhc
Q 013210 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQN 371 (447)
Q Consensus 327 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~ 371 (447)
++ ..+.++++.+... .....+...|..
T Consensus 308 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (417)
T 3n0l_A 308 DG------------------TDNHLVLMSFLDREFSGKDADLALGN 335 (417)
T ss_dssp GS------------------CSSSEEEEECTTSSSCHHHHHHHHHH
T ss_pred CC------------------CCceEEEEEcccCCCCHHHHHHHHHH
Confidence 21 1344788887521 123445555554
No 175
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.87 E-value=3.3e-27 Score=234.70 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+++++ | .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~ 142 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVR-----LNNRKLVSNSL 142 (392)
Confidence 456777777654 3 3569999999999999999999999999999999999876662 25666666654
Q ss_pred --------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------cc--
Q 013210 173 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PA-- 233 (447)
Q Consensus 173 --------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~-- 233 (447)
.|+++|+++++++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+. ..
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (392)
T 3b1d_A 143 KEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTV 222 (392)
Confidence 26788888883367899999999999999986 889999999999999999999655432 11
Q ss_pred -C--CCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHH
Q 013210 234 -R--LGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH 308 (447)
Q Consensus 234 -~--~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~ 308 (447)
. .+.++++.|+||.+|++|.|+ ||+++++ ++++.+............+.+.+.++..++.. .+.+....+++.+
T Consensus 223 ~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 301 (392)
T 3b1d_A 223 SPDFKDFALVLSSATKTFNIAGTKN-SYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEE 301 (392)
Confidence 1 356799999999999899998 8888764 58887776554221112233444434333332 2334555666788
Q ss_pred HHHHHHHHHHh
Q 013210 309 RALIFARRMKK 319 (447)
Q Consensus 309 ~~~~l~~~L~~ 319 (447)
+++.+.+.|++
T Consensus 302 ~~~~l~~~l~~ 312 (392)
T 3b1d_A 302 NIQFAVEYFAQ 312 (392)
Confidence 88888888876
No 176
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.92 E-value=3.8e-24 Score=213.22 Aligned_cols=287 Identities=17% Similarity=0.131 Sum_probs=191.2
Q ss_pred HHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCe--eEEEeCC------CC
Q 013210 104 LSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDI------SD 174 (447)
Q Consensus 104 l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~~~~v~~------~d 174 (447)
+++.+++++|.+.. +++++|++|+.+++++++++||+|+++.++|+++.... ..+. ..|. ....++. .|
T Consensus 74 ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~-~~g~~~~~~~~~~~~~~~~~d 151 (407)
T 2dkj_A 74 AIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVN-FSGKLYKVVSYGVRPDTELID 151 (407)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTS-HHHHHSEEEEECCCTTTSSCC
T ss_pred HHHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHH-hcCceEEEEecCCCcccCccC
Confidence 34599999998775 66778899999999999999999999999998874211 1111 1233 3444431 28
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCC-----CccCCCCeEEEeCCCccc
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVL-----SPARLGADVVVHSISKFI 248 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~-----~~~~~g~di~~~S~sK~~ 248 (447)
+++|++++++.++++|++++|+|| .+.|+++|.++|++||+++|+|++|+. +.. .+.. .+|+++.|+||++
T Consensus 152 ~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l 228 (407)
T 2dkj_A 152 LEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTL 228 (407)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGG
T ss_pred HHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccC
Confidence 999999994347999999889997 778999999999999999999999944 321 1122 3799999999977
Q ss_pred cCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHH-HHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013210 249 SGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK-VAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKV 324 (447)
Q Consensus 249 g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~-~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v 324 (447)
+ |.+. |+++++ +++++.+......+. ..+...... ++..++.. ...+....+++.++++++.+.|++.+.++
T Consensus 229 ~--g~~~-G~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 304 (407)
T 2dkj_A 229 R--GPRG-GLILSNDPELGKRIDKLIFPGI-QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRI 304 (407)
T ss_dssp C--CCSC-EEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred C--CCCc-eEEEECCHHHHHHHHhhhcccc-cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCcee
Confidence 6 4455 999998 799888876554221 112222222 22222322 23456677888999999999999886665
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 325 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 325 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
..+. +.|.++++.++.. .....+.+.|.. .| +.+..|.. +... ..
T Consensus 305 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~---~g-i~v~~~~~------~~~~----~~-- 350 (407)
T 2dkj_A 305 VTGG------------------TDNHLFLVDLRPKGLTGKEAEERLDA---VG-ITVNKNAI------PFDP----KP-- 350 (407)
T ss_dssp GGGS------------------CSSSEEEEECGGGTCCHHHHHHHHHH---TT-EECEECCC------TTCS----SC--
T ss_pred ecCC------------------CCceEEEEECcccCCCHHHHHHHHHH---cC-ceecCCcC------cccc----cc--
Confidence 4321 2466899998631 124566677764 23 45555531 1000 00
Q ss_pred HHHhcCCCCCeEEEEeC-------CCCCHHHHHHHHHHHHHH
Q 013210 404 EKALAGISAGLVRMSVG-------YLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g-------~~~~~~~~i~~l~~al~~ 438 (447)
...++.+|||++ ..++++..++.|.+++++
T Consensus 351 -----~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 351 -----PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp -----TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred -----ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 012468999983 146677777777777665
No 177
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.3e-24 Score=217.73 Aligned_cols=282 Identities=12% Similarity=0.078 Sum_probs=196.8
Q ss_pred HHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcC-----CC---CeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 102 LNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCS-----SG---GHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 102 ~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~-----~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
+++++.+++++|.+ .+++|+||++|+.+++++++. +| ++|+++.+.|+++...+. ..|.++++
T Consensus 110 ~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~-----~~G~~~~~ 184 (497)
T 3mc6_A 110 SEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY-----YFGMKLRH 184 (497)
T ss_dssp HHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH-----HSCCEEEE
T ss_pred HHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH-----HcCCeEEE
Confidence 45667788888876 599999999999999998764 45 899999999999887773 36888888
Q ss_pred eCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC--------------C
Q 013210 170 VDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--------------V 229 (447)
Q Consensus 170 v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--------------~ 229 (447)
++.+ |+++|++++ ++++++|++++|+||+|.+.|+++|.++|++||+++|+|++|+.+ .
T Consensus 185 v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~ 263 (497)
T 3mc6_A 185 VELDPTTYQVDLGKVKKFI-NKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPL 263 (497)
T ss_dssp ECBCTTTCSBCTTTTGGGC-CSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCC
T ss_pred EecCcccCcCCHHHHHHHH-hhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcc
Confidence 8754 588999999 778999999999999999999999999999999999999999532 1
Q ss_pred CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh-hhh-------hhhcCCCcc--HHHHHHHHccC--C
Q 013210 230 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGA-------LMLLGPTMN--PKVAFELSERI--P 297 (447)
Q Consensus 230 ~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~-------~~~~g~~~~--~~~a~~~~~~~--~ 297 (447)
++....|+|+++.|+||+++++. ++ |+++.+++.+....... ... ....+.... ..++++++..+ .
T Consensus 264 ~~~~~~g~d~~~~s~~K~l~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~ 341 (497)
T 3mc6_A 264 LDFRVPGVTSISCDTHKYGFAPK-GS-SVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGEN 341 (497)
T ss_dssp CSTTSTTCCEEEEETTTTTCCCS-SC-EEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhhcCCCC-Cc-eeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHH
Confidence 33344589999999999975332 35 78777665543321110 100 000011111 22233333222 3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 375 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~--~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~ 375 (447)
.+.+..++..++++++.+.|++. ++++..+. .+++++|..++. ....+.+.|...
T Consensus 342 ~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-------------------~~~~v~~~~~~~-~~~~l~~~L~~~--- 398 (497)
T 3mc6_A 342 GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-------------------RYSVISFSSKTL-NIHELSDRLSKK--- 398 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-------------------CSSEEEEECTTT-THHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------------CeeEEEEeCCCC-CHHHHHHHHHhC---
Confidence 35567788889999999999984 45655432 345888887643 256777777753
Q ss_pred ccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC--CCCCHHHHHHHHHHHHHHhhh
Q 013210 376 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG--YLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 376 g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g--~~~~~~~~i~~l~~al~~~~~ 441 (447)
| +.++.+. .+..+|++++ ..+++++++++|.++++++..
T Consensus 399 G-i~v~~~~--------------------------~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 399 G-WHFNALQ--------------------------KPVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp T-CBCEECC--------------------------SSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred C-EEEecCC--------------------------CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3 3333221 1235788876 147788888888888887754
No 178
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.92 E-value=3.3e-23 Score=208.04 Aligned_cols=210 Identities=19% Similarity=0.216 Sum_probs=160.5
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
.+...++++.+|+++|.+.+++|+||++|+.++++++. +||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~-----~~G~~~~~v~~~~~~~ 124 (424)
T 2po3_A 51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALR-----WIGLTPVFADIDPDTG 124 (424)
T ss_dssp CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTS
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCCcC
Confidence 46778999999999999999999999999999999875 78999999999999987663 268888888754
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeCCC--c
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHSIS--K 246 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S~s--K 246 (447)
|+++|++++ ++++++|+++ ||+|.+.++++|.++|+++|+++|+|++|+ ++.++...++ .|+++.|+| |
T Consensus 125 ~~d~~~l~~~i-~~~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K 200 (424)
T 2po3_A 125 NLDPDQVAAAV-TPRTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATK 200 (424)
T ss_dssp SBCHHHHGGGC-CTTEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred CcCHHHHHHhh-CcCCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCC
Confidence 899999999 6789999874 489999999999999999999999999996 4544322222 589999998 6
Q ss_pred cccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhh------hcC--CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013210 247 FISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L 317 (447)
.+++ .++ |+++.+ +++++.+......... ..| ..+.+..+...+..++.+....++..++++++.+.|
T Consensus 201 ~l~~--~~~-G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L 277 (424)
T 2po3_A 201 AVNA--FEG-GAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHL 277 (424)
T ss_dssp SSCC--SSC-EEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccC--CCC-eEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6654 565 999888 7888888765442110 011 123445454444444445556666777778888888
Q ss_pred HhC
Q 013210 318 KKL 320 (447)
Q Consensus 318 ~~~ 320 (447)
+++
T Consensus 278 ~~~ 280 (424)
T 2po3_A 278 ADL 280 (424)
T ss_dssp CSC
T ss_pred ccC
Confidence 766
No 179
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.92 E-value=5.4e-24 Score=215.97 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=173.6
Q ss_pred ccccccccCCH-HHHHHhhcCCC--CCCCCCccccCCCCchHH-HHHHHHHHHhCCCe-----EEEeCChHHHHHHHHHH
Q 013210 63 EASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVL-NLSRQMAALEGTEA-----AYCTASGMSAISSVLMQ 133 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~-~l~~~ia~l~g~~~-----~~~tsggt~A~~~al~~ 133 (447)
..|.+|+.+.+ ++|...+.+.| |+|++.|..|......++ .+++++++++|++. .++++|||+||.+++.+
T Consensus 60 ias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 60 IASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp CTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence 35777776666 77777777766 677766655544333333 45599999999976 35677999999999999
Q ss_pred hcCCCCeEEEeCCCchhHHHHHH--h--hcCcccCe--eEEEeCC------CCHHHHHHhhccCCceEEEEEcCCCCCcc
Q 013210 134 LCSSGGHVVAARTLYGGTHALLT--H--FFPRACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLA 201 (447)
Q Consensus 134 l~~~gd~Vi~~~~~y~~~~~~~~--~--~~~~~~g~--~~~~v~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~ 201 (447)
++++||+|+++.+.|+++..... . .. ...|. .+..++. .|+++|+++++..++++|+++.++|| .
T Consensus 140 l~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i-~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~ 216 (490)
T 2a7v_A 140 LLQPHDRIMGLDLPDGGHLTHGYMSDVKRI-SATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--R 216 (490)
T ss_dssp HCCSCEECCC--------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--S
T ss_pred HcCCCCEecccCccccccccchhhhcchhH-HHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--C
Confidence 99999999999999876432110 0 00 11233 2333322 28999999884457899998888876 5
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCC-CCC-----CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChH-----------
Q 013210 202 VANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN----------- 264 (447)
Q Consensus 202 v~~l~~I~~la~~~gi~livD~~~-~~~-----~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~----------- 264 (447)
+.|+++|.++|++||+++|+|++| .++ ...+.. ++|+++.|+||.++++ + ||+++++++
T Consensus 217 ~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp--~-GG~i~~~~~~~~~~~~~~~~ 292 (490)
T 2a7v_A 217 LIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVTTTTHKTLRGA--R-SGLIFYRKGVKAVDPKTGRE 292 (490)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCSC--S-CEEEEEECSEEEEETTTEEE
T ss_pred cccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEEEECCcccCccc--c-chheeeccchhcccccccch
Confidence 789999999999999999999997 222 123333 6899999999998654 2 588877653
Q ss_pred ----HHHHHHHHhhhhhhhcCCCccHHHHHH-HHcc-C-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHH
Q 013210 265 ----LVNSMMDLHQGALMLLGPTMNPKVAFE-LSER-I-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 337 (447)
Q Consensus 265 ----~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~-~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l 337 (447)
+.+.++...... ...+..+...++.. ++.. . +.+.++.++..+++++|++.|++.++++..++.
T Consensus 293 ~~~~l~~~i~~~~~~g-~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t-------- 363 (490)
T 2a7v_A 293 IPYTFEDRINFAVFPS-LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGT-------- 363 (490)
T ss_dssp EECCCHHHHHHHHTTT-TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC--------
T ss_pred hhHHHHHHHHHHhccc-CCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCC--------
Confidence 455555443211 12223333333322 2221 1 245667788899999999999998887653221
Q ss_pred HHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccc
Q 013210 338 LKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 338 ~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
...++++.+... .....+.+.|... | |.++.+
T Consensus 364 ----------~t~lv~vdl~~~g~~~~~~~~~L~~~---G-I~v~~~ 396 (490)
T 2a7v_A 364 ----------DNHLVLVDLRPKGLDGARAERVLELV---S-ITANKN 396 (490)
T ss_dssp ----------SSSEEEEECTTTTCCHHHHHHHHHHT---T-EECEEE
T ss_pred ----------CCeEEEEEeCCCCCCHHHHHHHHHhC---C-eEEecC
Confidence 123888887632 1234455555542 2 455544
No 180
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.92 E-value=9.9e-24 Score=211.71 Aligned_cols=292 Identities=13% Similarity=0.156 Sum_probs=185.1
Q ss_pred CCCchHHHHHHHHHHHh-C-C-CeEEEeCChHHHHHHHHH---HhcCCCCeEEEeCCCchhHHHHHHhhcCc------cc
Q 013210 96 HFNPTVLNLSRQMAALE-G-T-EAAYCTASGMSAISSVLM---QLCSSGGHVVAARTLYGGTHALLTHFFPR------AC 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g-~-~~~~~tsggt~A~~~al~---~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~------~~ 163 (447)
...+...++++.|++++ + . +.+++|+||++|+.++++ .+.++| +|++.+|.|++........... ..
T Consensus 81 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~ 159 (426)
T 1sff_A 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGM 159 (426)
T ss_dssp EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTS
T ss_pred cCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCcccccccc
Confidence 34567789999999999 5 4 679999999999999988 566666 8999999998765422122110 01
Q ss_pred Ce---eEEEeCCC----------CHHHHHHhhcc----CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEe
Q 013210 164 NI---TTTFVDIS----------DHEMVNSAIVQ----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 164 g~---~~~~v~~~----------d~~~l~~~i~~----~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD 222 (447)
+. .+..++.+ |+++|++++++ +++++|++++.+|+||.+.+ +++|.++|++||+++|+|
T Consensus 160 ~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~D 239 (426)
T 1sff_A 160 GLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIAD 239 (426)
T ss_dssp CCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 11 24445442 68899988842 56788888654333997777 999999999999999999
Q ss_pred CCCCCCCCC-----ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc
Q 013210 223 NTFSPLVLS-----PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER 295 (447)
Q Consensus 223 ~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~ 295 (447)
|+|+++... ....+ +|++ |+||++++ |.|+ ||+++++++++.+..... .....++.+.+.++..++..
T Consensus 240 e~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-Glri-G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~aal~~ 314 (426)
T 1sff_A 240 EVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPL-AGVTGRAEVMDAVAPGGL-GGTYAGNPIACVAALEVLKV 314 (426)
T ss_dssp CTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCC-EEEEEEHHHHTTSCTTSB-CCSSSSCHHHHHHHHHHHHH
T ss_pred chhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCce-EEEEEcHHHHhhhccCCc-CcCCCCCHHHHHHHHHHHHH
Confidence 999765321 11223 5554 78999997 9999 999998888776643211 11122222333333322222
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHHHHHHHHH
Q 013210 296 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMN 367 (447)
Q Consensus 296 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~~~~~l~~ 367 (447)
+.. ....+++.++++++.+.|++.+.. .|.....+ +.|.++++.+. .......+.+
T Consensus 315 ~~~-~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (426)
T 1sff_A 315 FEQ-ENLLQKANDLGQKLKDGLLAIAEK--HPEIGDVR-------------GLGAMIAIELFEDGDHNKPDAKLTAEIVA 378 (426)
T ss_dssp HHH-TTHHHHHHHHHHHHHHHHHHHHHT--CTTEEEEE-------------EETTEEEEEEBGGGCTTSBCHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEE-------------EEEEEEEEEEecCccccCCChHHHHHHHH
Confidence 111 124456677778888887663200 01000000 24679999994 2344667777
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|... | +.+..|+. .++.+|||++ ...+++.++.+.++|+++
T Consensus 379 ~l~~~---g-i~v~~~~~-------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 420 (426)
T 1sff_A 379 RARDK---G-LILLSCGP-------------------------YYNVLRILVP-LTIEDAQIRQGLEIISQC 420 (426)
T ss_dssp HHHHT---T-EECEEEST-------------------------TSCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHC---C-cEEecCCC-------------------------CCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 77652 3 34443311 1478999998 666666676666666554
No 181
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=6.1e-24 Score=213.09 Aligned_cols=281 Identities=16% Similarity=0.159 Sum_probs=185.8
Q ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcC-CCCeEEEeCCCchhHHHHHHhhcC------cc--
Q 013210 95 RHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFP------RA-- 162 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~-~gd~Vi~~~~~y~~~~~~~~~~~~------~~-- 162 (447)
++..+...++++++++++|. +.++||+||++|+.++++.+.. +|++|++..|.|++.......... ..
T Consensus 82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~ 161 (419)
T 2eo5_A 82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVG 161 (419)
T ss_dssp CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSC
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccC
Confidence 34566678999999999985 4699999999999999987643 389999999999865443321110 00
Q ss_pred -cCeeEEEeCCC---------------------CHHHHH-Hhhcc----CCceEEEEEcCCCCCccccC----HHHHHHH
Q 013210 163 -CNITTTFVDIS---------------------DHEMVN-SAIVQ----GRTKVLYFESISNPTLAVAN----IPELSRL 211 (447)
Q Consensus 163 -~g~~~~~v~~~---------------------d~~~l~-~~i~~----~~t~lV~i~~~~NptG~v~~----l~~I~~l 211 (447)
....+..++.+ |+++|+ +++++ +++++|+++++|||+|.+.+ +++|.++
T Consensus 162 ~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l 241 (419)
T 2eo5_A 162 PFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKL 241 (419)
T ss_dssp CCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred CCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHH
Confidence 11244555443 367888 88832 46778888777788998776 9999999
Q ss_pred HHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhhhhhhhcCCC
Q 013210 212 AHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPT 283 (447)
Q Consensus 212 a~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~ 283 (447)
|++||+++|+||+|+++.... .....|++ |+||.+++ | .|+ |+++++++++ .+ .... ..+..++.
T Consensus 242 ~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~ri-G~~~~~~~~~-~~-~~~~-~~t~~~n~ 314 (419)
T 2eo5_A 242 AKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPI-GATIFRKDLD-FK-PGMH-SNTFGGNA 314 (419)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCC-EEEEEEGGGC-CC--------CCCCCH
T ss_pred HHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-Cccce-EEEEEchHhh-cC-Cccc-CCCCCCCH
Confidence 999999999999996553211 12235555 68999995 8 999 8888888877 65 3111 11123333
Q ss_pred ccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHH
Q 013210 284 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKA 362 (447)
Q Consensus 284 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~ 362 (447)
+.+.++..++. .+.+..+++.++++++.+.|++. .... + +.|.++++.+. .....
T Consensus 315 ~~~~aa~aal~---~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~-------------------~~g~~~~i~~~~~~~~~ 370 (419)
T 2eo5_A 315 LACAIGSKVID---IVKDLLPHVNEIGKIFAEELQGL-ADDV-R-------------------GIGLAWGLEYNEKKVRD 370 (419)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTS-SSEE-E-------------------EETTEEEEECSCHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh-hhhe-E-------------------eeeEEEEEEEecCccHH
Confidence 33333333333 23335677888899999999765 2111 1 35678999984 32334
Q ss_pred HHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. +.+.|... | +.++.+ + ++.||||++ ...+++.++.+.++|+++
T Consensus 371 ~-~~~~l~~~---G-v~v~~~-------------------------~--~~~lRis~~-~~~t~e~i~~~l~~l~~~ 414 (419)
T 2eo5_A 371 R-IIGESFKR---G-LLLLPA-------------------------G--RSAIRVIPP-LVISEEEAKQGLDILKKV 414 (419)
T ss_dssp H-HHHHHHHT---T-EECEEE-------------------------T--TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHC---C-CEEecC-------------------------C--CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 5 77777642 3 333322 1 368999998 777777777777777654
No 182
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.92 E-value=1.6e-23 Score=216.54 Aligned_cols=150 Identities=11% Similarity=0.224 Sum_probs=122.5
Q ss_pred CeEEEeCChHHHHHHHHHH-----hcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-------CCHHHHHHhh
Q 013210 115 EAAYCTASGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAI 182 (447)
Q Consensus 115 ~~~~~tsggt~A~~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i 182 (447)
+.+++|+|+++|+.+++++ ++++||+|+++.|.|+++..... +.. .|.++..++. .|+++|++++
T Consensus 166 ~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~--~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~~ 242 (546)
T 2zy4_A 166 VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE--LAQ-YALEEVAINADPSLNWQYPDSELDKLK 242 (546)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH--STT-SCCEEEEEECBGGGTTBCCHHHHGGGG
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH--HcC-CCcEEEEEecCcccCCCCCHHHHHHhh
Confidence 5699999999999999987 47899999999999999887642 222 4677777764 2789998887
Q ss_pred ccCCceEEEEEcCCCCCccccC---HHHHHHHH--HhcCCEEEEeCCCCCCCCCc---cC--CCCeEEEeCCCccccCCC
Q 013210 183 VQGRTKVLYFESISNPTLAVAN---IPELSRLA--HDKGVTVVVDNTFSPLVLSP---AR--LGADVVVHSISKFISGGA 252 (447)
Q Consensus 183 ~~~~t~lV~i~~~~NptG~v~~---l~~I~~la--~~~gi~livD~~~~~~~~~~---~~--~g~di~~~S~sK~~g~~g 252 (447)
++++++|++++|+||||.+.+ +++|+++| +++|+++|+|++|..+...+ .. .+.++++.|+||.+|.+|
T Consensus 243 -~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G 321 (546)
T 2zy4_A 243 -DPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG 321 (546)
T ss_dssp -STTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG
T ss_pred -CCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC
Confidence 778999999999999999987 56678888 78999999999996554322 11 157899999999999999
Q ss_pred CeeEEEEEcChH-HHHHH
Q 013210 253 DIIAGAVCGPAN-LVNSM 269 (447)
Q Consensus 253 ~~igG~l~~~~~-~~~~l 269 (447)
.|+ ||++++++ +++.+
T Consensus 322 lRi-G~~~~~~~~l~~~l 338 (546)
T 2zy4_A 322 WRL-GVVAAHQQNVFDLA 338 (546)
T ss_dssp GCE-EEEEEESSCHHHHH
T ss_pred cce-EEEEECCHHHHHHH
Confidence 998 99988764 77666
No 183
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.92 E-value=1e-23 Score=213.55 Aligned_cols=289 Identities=13% Similarity=-0.015 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHhCCC-------eEEEeCChHHHHHHHHHHhcC--------CC-----CeEEEeCCCchhHHHHHHhhcC
Q 013210 101 VLNLSRQMAALEGTE-------AAYCTASGMSAISSVLMQLCS--------SG-----GHVVAARTLYGGTHALLTHFFP 160 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~-------~~~~tsggt~A~~~al~~l~~--------~g-----d~Vi~~~~~y~~~~~~~~~~~~ 160 (447)
.+++++.+++++|.+ .+++|+|||+|+.+++.++.. +| ++|+++. .|.++...+.
T Consensus 83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~---- 157 (452)
T 2dgk_A 83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFAR---- 157 (452)
T ss_dssp HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHH----
Confidence 456677779999875 289999999999999988753 45 5899999 9988877662
Q ss_pred cccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc------CCEEEEeCCCCCC
Q 013210 161 RACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTFSPL 228 (447)
Q Consensus 161 ~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~------gi~livD~~~~~~ 228 (447)
..|+++++++.+ |+++|++++ +++|++|++++|+||||.+.|+++|+++|+++ |+++|+|++|+.+
T Consensus 158 -~~G~~v~~v~~~~~~~~~d~~~l~~~i-~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~ 235 (452)
T 2dgk_A 158 -YWDVELREIPMRPGQLFMDPKRMIEAC-DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 235 (452)
T ss_dssp -HTTCEEEECCCBTTBCSCCHHHHHHHC-CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGG
T ss_pred -HcCceEEEEecCCCCCeECHHHHHHHH-hhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHH
Confidence 368889888764 899999999 77899999999999999999999999999995 9999999999543
Q ss_pred CC---C---cc---CCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHH-HHHHHHhhhhhh-------hcCCCc--cHHH
Q 013210 229 VL---S---PA---RLGADVVVHSISKFISGGADIIAGAVCGP-ANLV-NSMMDLHQGALM-------LLGPTM--NPKV 288 (447)
Q Consensus 229 ~~---~---~~---~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~-~~l~~~~~~~~~-------~~g~~~--~~~~ 288 (447)
.. . +. ..++|+++.|+||++.+ +.++ |+++.+ ++++ +.+.. ...+.. ..+... ....
T Consensus 236 ~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~-~~~~-G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~ 312 (452)
T 2dgk_A 236 LAPFVAPDIVWDFRLPRVKSISASGHKFGLA-PLGC-GWVIWRDEEALPQELVF-NVDYLGGQIGTFAINFSRPAGQVIA 312 (452)
T ss_dssp THHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSC-EEEEESSGGGSCGGGCE-EECCTTCCEEECCSCCSCBCHHHHH
T ss_pred HHHhhCccchhhcCCCCCcEEEECcccccCC-CCCe-EEEEEcCHHHHHHHhcc-CccccCCCCCCcccCCCChhHHHHH
Confidence 21 1 11 22789999999997753 3345 777764 4333 33211 110100 011111 1222
Q ss_pred HHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH----H
Q 013210 289 AFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE----K 361 (447)
Q Consensus 289 a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~----~ 361 (447)
.++++. +.+.+.++.++..++++++.+.|++.+ +++..|+.+. ...++++|.+++.. .
T Consensus 313 ~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~---------------~~~~~v~f~~~~~~~~~~~ 377 (452)
T 2dgk_A 313 QYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD---------------EGIPAVCFKLKDGEDPGYT 377 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTT---------------TBSSEEEEEECTTCCCSCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCC---------------CCeEEEEEEecCcccccCC
Confidence 222222 224466778888999999999999886 4665443110 13458999987421 2
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...+.+.|... | +.++.. ..|... ...+.+|||++ ..++++.++.|.++|+++
T Consensus 378 ~~~l~~~L~~~---G-i~v~~~------~~~~~~--------------~~~~~lRis~~-~~~t~e~id~li~~l~~~ 430 (452)
T 2dgk_A 378 LYDLSERLRLR---G-WQVPAF------TLGGEA--------------TDIVVMRIMCR-RGFEMDFAELLLEDYKAS 430 (452)
T ss_dssp HHHHHHHHHHT---T-CBCCEE------ECSTTC--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---C-Ceeeee------eCCccc--------------CCeEEEEEEec-CCCCHHHHHHHHHHHHHH
Confidence 35677777652 2 222211 001100 01458999999 765566666666555443
No 184
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.92 E-value=6e-24 Score=207.86 Aligned_cols=312 Identities=10% Similarity=0.012 Sum_probs=209.9
Q ss_pred ccccccccCCH-HHHHHhhcCCCCCCCCCccccC---CCCchHHHHHHHHHHHhCCC---eEEE-eCChHHHHHHHHHHh
Q 013210 63 EASATFTVMEP-ETMRRMFAGELGPDRDFFIYSR---HFNPTVLNLSRQMAALEGTE---AAYC-TASGMSAISSVLMQL 134 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~l~~~ia~l~g~~---~~~~-tsggt~A~~~al~~l 134 (447)
..++|++.+++ ++|.+.+...++||+|.|..+. .....++++|+.+++++|++ .++| |+|||+|+++++.++
T Consensus 10 ~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~ 89 (361)
T 3m5u_A 10 SAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNL 89 (361)
T ss_dssp CSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhc
Confidence 45777777777 8888888877888888664433 34467889999999999983 4888 999999999999998
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 207 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~ 207 (447)
+ +||++......+.+.. .. ....+ .|+++++++.+ +++. + + +++|++|++.+..|.+|.+.|.
T Consensus 90 ~-~~~~~~~i~~~~~~~~-~~-~~a~~-~G~~v~~~~~~~~g~~~~~~~~--~-l-~~~t~lv~~~~~e~~tG~~~~~-- 159 (361)
T 3m5u_A 90 A-LNGVCEYANTGVWTKK-AI-KEAQI-LGVNVKTVASSEESNFDHIPRV--E-F-SDNADYAYICSNNTIYGTQYQN-- 159 (361)
T ss_dssp C-CSSCEEEEECSHHHHH-HH-HHHHH-TTCCEEEEEECTTTTSCSCCCC--C-C-CTTSSEEEEESEETTTTEECSS--
T ss_pred C-CCCeEEEEeCCHHHHH-HH-HHHHH-cCCceEEEecccCcCCCcCChh--h-c-CCCCCEEEEeCCCCCcceeCCc--
Confidence 8 7876522222222222 11 22233 57777776543 2344 3 7 7889999998888888999762
Q ss_pred HHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH-H-------hh--h
Q 013210 208 LSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-L-------HQ--G 275 (447)
Q Consensus 208 I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~-------~~--~ 275 (447)
+++ +|+++|+|.+| +..+++.. ..|+++.|.||++|++| + |+++.++++++.+.. . .. .
T Consensus 160 ---i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~K~~gp~G--~-g~l~~~~~~~~~~~~~~~p~~~~~~~~~~ 230 (361)
T 3m5u_A 160 ---YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQKNAGISG--L-SCIFIRKDMLERSKNKQIPSMLNYLTHAE 230 (361)
T ss_dssp ---CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETTTTSSCTT--C-EEEEEEHHHHHHHHTCCCCGGGCHHHHHH
T ss_pred ---ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEechhccCCCc--c-EEEEEcHHHHhhhcCCCCCceeehHHHhh
Confidence 344 49999999998 55666665 37999999999999888 4 889988888776643 1 00 0
Q ss_pred hhhhcCCCccHHH--H-HHHHccC--C-cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhccCCC
Q 013210 276 ALMLLGPTMNPKV--A-FELSERI--P-HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 276 ~~~~~g~~~~~~~--a-~~~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
.....+ +++... + ..++..+ . .+....++..++++++.+.|++++ . ....+... .
T Consensus 231 ~~~~~~-Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~----------------r 293 (361)
T 3m5u_A 231 NQSLFN-TPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKD----------------R 293 (361)
T ss_dssp TTTCSS-CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGG----------------B
T ss_pred cCCCCC-CccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHH----------------c
Confidence 011122 222221 1 1122211 2 366677788999999999999887 3 33221100 1
Q ss_pred cCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013210 348 FGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 425 (447)
Q Consensus 348 ~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~ 425 (447)
..++++|.+++ ..+ ..+...|... | +.+..|.. ..+.+|+|++ ..++
T Consensus 294 s~~ivsf~~~~~~~~~-~~~~~~L~~~---g-I~~~~g~~-------------------------~~g~iRiS~~-~~~t 342 (361)
T 3m5u_A 294 SLMNVSFNIAKNKDLE-PLFVKEAEEA---G-MIGLKGHR-------------------------ILGGIRASIY-NALN 342 (361)
T ss_dssp CSSEEEEEESSCTTHH-HHHHHHHHHT---T-EECCBCCT-------------------------TTCSEEEECC-TTSC
T ss_pred CCeEEEEECCCchhhh-HHHHHHHHHC---C-CEEecCCC-------------------------ccCeEEEEcc-CCCC
Confidence 23599999985 122 3566777653 3 44444411 0145999999 9999
Q ss_pred HHHHHHHHHHHHHhhh
Q 013210 426 DQRWSQFEKALSRMQD 441 (447)
Q Consensus 426 ~~~i~~l~~al~~~~~ 441 (447)
+++|+.|.++|+++.+
T Consensus 343 ~edId~l~~al~~~~~ 358 (361)
T 3m5u_A 343 LDQVKTLCEFMKEFQG 358 (361)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 185
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.91 E-value=4.3e-24 Score=217.98 Aligned_cols=323 Identities=16% Similarity=0.163 Sum_probs=199.0
Q ss_pred ccccccccCCH-HHHHHhhcCCC--CCCCCCccccC--CCCchHHHHHHHHHHHhCCCe-----EEEeCChHHHHHHHHH
Q 013210 63 EASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSR--HFNPTVLNLSRQMAALEGTEA-----AYCTASGMSAISSVLM 132 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r--~~~~~~~~l~~~ia~l~g~~~-----~~~tsggt~A~~~al~ 132 (447)
..+.+++.+.+ +.+...+...+ |+|.+.| |+. ......+.+++.+++++|++. .+++.+|++|+.+++.
T Consensus 50 ~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~-y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~ 128 (483)
T 1rv3_A 50 IASENFASRAVLEALGSCLNNKYSLGYPGQRY-YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYT 128 (483)
T ss_dssp CTTCCCCCHHHHHHHTSGGGTCCCCEETTEES-SSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHhccCcccCCCccc-cCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHH
Confidence 44555554444 56656665554 4443322 221 111223455689999999863 2555566699998899
Q ss_pred HhcCCCCeEEEeCCCchhHHHHHHhh---cCcccC--eeEEEeCC------CCHHHHHHhhccCCceEEEEEcCCCCCcc
Q 013210 133 QLCSSGGHVVAARTLYGGTHALLTHF---FPRACN--ITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLA 201 (447)
Q Consensus 133 ~l~~~gd~Vi~~~~~y~~~~~~~~~~---~~~~~g--~~~~~v~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~ 201 (447)
+++++||+|++++++|+++....... .....| +.+..++. .|+++|++++..++|++|++ +++|++ .
T Consensus 129 all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~ 206 (483)
T 1rv3_A 129 ALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-R 206 (483)
T ss_dssp HHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-S
T ss_pred HhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-C
Confidence 99999999999999998875432100 001123 34444422 28999999993378999999 899988 8
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCCC-CCC-----CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChH-----------
Q 013210 202 VANIPELSRLAHDKGVTVVVDNTFS-PLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN----------- 264 (447)
Q Consensus 202 v~~l~~I~~la~~~gi~livD~~~~-~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~----------- 264 (447)
+.|+++|.++|+++|+++|+|++|. ++. ..+.. ++|+++.|+||+++++ +. |+++.+++
T Consensus 207 ~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div~~s~~K~l~Gp--rg-G~i~~~~~~~~~~~~~g~~ 282 (483)
T 1rv3_A 207 NLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVVTTTTHKTLRGC--RA-GMIFYRRGVRSVDPKTGKE 282 (483)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEEEEESSGGGCCC--SC-EEEEEECSBCC-------C
T ss_pred cCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEEEecCcccCCCC--Cc-eEEEEcchhhhhccccCcc
Confidence 9999999999999999999999983 221 12222 6899999999998643 44 88887654
Q ss_pred ----HHHHHHHHhhhhhhhcCCCc-cHHHHHH-HHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhH
Q 013210 265 ----LVNSMMDLHQGALMLLGPTM-NPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 336 (447)
Q Consensus 265 ----~~~~l~~~~~~~~~~~g~~~-~~~~a~~-~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~ 336 (447)
+.+.+....... ..|+.. ...++.. ++... ..+....+++.++++++.+.|++.++++..|+.
T Consensus 283 ~~y~~~~~~~~~~~~~--~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~------- 353 (483)
T 1rv3_A 283 ILYNLESLINSAVFPG--LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGS------- 353 (483)
T ss_dssp CBCCHHHHHHHHHTTT--TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-------
T ss_pred hhhHHHHHhhhhcCCc--ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCC-------
Confidence 333343221111 123322 2222222 22221 246677788899999999999988777664431
Q ss_pred HHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccc----ccCccccccccccccCCCCCHHHHHhcCCC
Q 013210 337 LLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVS----LGYYETLMSCSGSSTSSELNAEEKALAGIS 411 (447)
Q Consensus 337 l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs----~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~ 411 (447)
...++++.+... .....+.+.|... | +.++ .|. .|. ..
T Consensus 354 -----------~~~~~~v~~~~~g~~~~~~~~~L~~~---g-I~v~~~~~pg~--------~~~--------------~~ 396 (483)
T 1rv3_A 354 -----------DNHLILVDLRSKGTDGGRAEKVLEAC---S-IACNKNTCPGD--------KSA--------------LR 396 (483)
T ss_dssp -----------SSSEEEEEGGGGTCCHHHHHHHHHHT---T-EECEEECCSSC--------SCT--------------TS
T ss_pred -----------CCceEEEeccCCCCCHHHHHHHHHhC---C-cEEecCCCCCC--------CcC--------------CC
Confidence 112566666411 1133444555432 2 4544 231 111 12
Q ss_pred CCeEEEEeCCCCCH----HHHHHHHHHHHHHh
Q 013210 412 AGLVRMSVGYLGTL----DQRWSQFEKALSRM 439 (447)
Q Consensus 412 ~~~iRiS~g~~~~~----~~~i~~l~~al~~~ 439 (447)
.+.||||++ ..++ ++.++.+.++|.++
T Consensus 397 ~~~iRis~~-~~~t~g~~~edi~~~~~~l~~~ 427 (483)
T 1rv3_A 397 PSGLRLGTP-ALTSRGLLEKDFQKVAHFIHRG 427 (483)
T ss_dssp CCEEEEECH-HHHHTTCCHHHHHHHHHHHHHH
T ss_pred CceEEeecC-CcccCCCCHHHHHHHHHHHHHH
Confidence 478999999 7555 66666666666544
No 186
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.91 E-value=3.7e-23 Score=206.02 Aligned_cols=221 Identities=13% Similarity=0.122 Sum_probs=156.8
Q ss_pred ccccCCCCchHHHHHHHHHHHh-C---C----C--eEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhh
Q 013210 91 FIYSRHFNPTVLNLSRQMAALE-G---T----E--AAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF 158 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~-g---~----~--~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~ 158 (447)
+.|+... -..++++.+++++ + . + .+++|+||++|+.++++.++. + |+|++++|.|+++...+.
T Consensus 66 ~~Y~~~~--G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~-- 140 (405)
T 3k7y_A 66 KPYLLGN--GTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIE-- 140 (405)
T ss_dssp CCCCTTS--SCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHH--
T ss_pred CCCCCCC--CcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHH--
Confidence 4555422 2257888888875 2 1 2 358999999999999998877 8 999999999999988773
Q ss_pred cCcccCeeEEEeCC-C------CHHHHHHhhcc-CCceEEEEEcC-CCCCccccC---HHHHHHHHHhcCCEEEEeCCCC
Q 013210 159 FPRACNITTTFVDI-S------DHEMVNSAIVQ-GRTKVLYFESI-SNPTLAVAN---IPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 159 ~~~~~g~~~~~v~~-~------d~~~l~~~i~~-~~t~lV~i~~~-~NptG~v~~---l~~I~~la~~~gi~livD~~~~ 226 (447)
..|.++..++. + |+++|++++.+ +++++|+++++ |||||.+.+ +++|+++|++||+++|+|++|.
T Consensus 141 ---~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~ 217 (405)
T 3k7y_A 141 ---SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ 217 (405)
T ss_dssp ---TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT
T ss_pred ---HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc
Confidence 36888887765 1 88999998843 45788888765 899999986 6678899999999999999997
Q ss_pred CCCCCc-----------cC-CCCeEEEeCCCccccCCCCeeEEEEE---cChHHHHHHHH----HhhhhhhhcCCCccHH
Q 013210 227 PLVLSP-----------AR-LGADVVVHSISKFISGGADIIAGAVC---GPANLVNSMMD----LHQGALMLLGPTMNPK 287 (447)
Q Consensus 227 ~~~~~~-----------~~-~g~di~~~S~sK~~g~~g~~igG~l~---~~~~~~~~l~~----~~~~~~~~~g~~~~~~ 287 (447)
.+.++. .. ....+++.|+||.|+.+|+|+ ||++ .++++++.+.. ... ......+...+.
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRi-G~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~ 295 (405)
T 3k7y_A 218 GFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERA-GALHIVCKNQEEKKIVFNNLCFIVR-KFYSSPVIHTNR 295 (405)
T ss_dssp TTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTE-EEEEEECSSHHHHHHHHHHHHHHHH-TTTSSCCHHHHH
T ss_pred cccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccc-eEEEEEeCCHHHHHHHHHHHHHHHh-cccCCCcHHHHH
Confidence 765431 01 146799999999999999999 8874 35666655532 211 111111222333
Q ss_pred HHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHH----hCC
Q 013210 288 VAFELSER-------IPHLGLRMKEHCHRALIFARRMK----KLG 321 (447)
Q Consensus 288 ~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~----~~~ 321 (447)
++..++.. .+++....+++.++++.+.+.|+ +++
T Consensus 296 ~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g 340 (405)
T 3k7y_A 296 ILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYN 340 (405)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 33333332 12233445668999999999998 765
No 187
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.91 E-value=1.8e-23 Score=209.14 Aligned_cols=279 Identities=15% Similarity=0.119 Sum_probs=167.3
Q ss_pred ccccCCH-HHHHHhhcCCC--CCCCCCccccCCCC-chHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeE
Q 013210 67 TFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFN-PTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHV 141 (447)
Q Consensus 67 t~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~-~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~V 141 (447)
.+..|.+ +.+.+.+...+ ++|.+.|..+.... ...+.+++.+++++|.+.. +++++|++|+..++++++++||+|
T Consensus 40 n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v 119 (420)
T 3gbx_A 40 NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTV 119 (420)
T ss_dssp CCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEE
Confidence 3334444 55555554444 55554443333322 3344566899999998764 447788999999999999999999
Q ss_pred EEeCCCchhHHHHHHhhcCcccCeeEEEeCC-----CCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcC
Q 013210 142 VAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 216 (447)
Q Consensus 142 i~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~g 216 (447)
+++.++|+++............+.....++. .|+++|+++++..++++|++++|+|| .+.|+++|.++|++||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~ 197 (420)
T 3gbx_A 120 LGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIG 197 (420)
T ss_dssp EEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTT
T ss_pred EecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcC
Confidence 9999999874421111000001223222221 38999999994446899999888886 4789999999999999
Q ss_pred CEEEEeCCCC-CCC-----CCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh---HHHHHHHHHhhhhhhhcCCCccH-
Q 013210 217 VTVVVDNTFS-PLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA---NLVNSMMDLHQGALMLLGPTMNP- 286 (447)
Q Consensus 217 i~livD~~~~-~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~---~~~~~l~~~~~~~~~~~g~~~~~- 286 (447)
+++|+|++|+ ++. ..... .+|+++.|+||+++++ + ||++++++ ++.+.+....... ..++....
T Consensus 198 ~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g~--~-gg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 271 (420)
T 3gbx_A 198 AYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAGP--R-GGLILAKGGDEELYKKLNSAVFPS--AQGGPLMHV 271 (420)
T ss_dssp CEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCSC--S-CEEEEESSCCHHHHHHHHHHHC------CCCCHHH
T ss_pred CEEEEECCcchhceecccCCcccc-cCCEEEeecccCCCCC--C-ceEEEEcCCcHHHHHHhhhhcCCC--CCCCcchhH
Confidence 9999999973 221 11222 4899999999999643 2 49998887 7777766543311 12222222
Q ss_pred HHH-HHHHc-cC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHH
Q 013210 287 KVA-FELSE-RI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKA 362 (447)
Q Consensus 287 ~~a-~~~~~-~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~ 362 (447)
.++ ..++. .. +.+....+++.++++++.+.|++.+.++..++ ..+.++++.+.. ....
T Consensus 272 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~ 333 (420)
T 3gbx_A 272 IAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG------------------TENHLFLLDLVDKNLTG 333 (420)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CSSSEEEEECGGGTCCH
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC------------------CCCeEEEEEcCCCCCCH
Confidence 222 21222 22 34566778889999999999998776654322 134588888752 1123
Q ss_pred HHHHHHhhc
Q 013210 363 NRLMNYLQN 371 (447)
Q Consensus 363 ~~l~~~l~~ 371 (447)
..+.+.|..
T Consensus 334 ~~~~~~l~~ 342 (420)
T 3gbx_A 334 KEADAALGR 342 (420)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555554
No 188
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.91 E-value=2.2e-23 Score=207.56 Aligned_cols=289 Identities=9% Similarity=0.021 Sum_probs=184.9
Q ss_pred chHHHHHHHHHHHhCCC---eEEE-eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC
Q 013210 99 PTVLNLSRQMAALEGTE---AAYC-TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~~-tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d 174 (447)
+..+++++.+++++|.+ .++| |+||++|+++++++++++| .++++...|...........+ .|.++++++.++
T Consensus 78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~--~g~~~~~v~~~~ 154 (398)
T 2fyf_A 78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNP--FVGEPIIITSDP 154 (398)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCT--TSCCCEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhC--CCCceEEEecCC
Confidence 45689999999999975 5888 9999999999999998876 334455545322111111111 256666665531
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccCC-CCeEEEeCCCccccCCCC
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGAD 253 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~~-g~di~~~S~sK~~g~~g~ 253 (447)
-......+ +++|++|++++++||||.+.|+++|.++ +|+++|+|++|+.+... ..+ ++|+++.|+||++|++|.
T Consensus 155 g~~~~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~-~~~~~~di~~~s~sK~~~~~gg 229 (398)
T 2fyf_A 155 GSAPEPQT-DPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP-VDIAETDAYYFAPQKNFASDGG 229 (398)
T ss_dssp TCCCCCCC-CTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC-CCGGGCSEEEECTTSTTCSCSS
T ss_pred CCCCCccc-cCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcc-cCcccCcEEEEecCcccCCCCc
Confidence 00001125 6789999999999999999999988887 89999999999433221 112 479999999999998864
Q ss_pred eeEEEEEcChHHHHHHHHHhh----------hh--------hhhcCCCc-cHH-HHHHHHccCC---cHHHHHHHHHHHH
Q 013210 254 IIAGAVCGPANLVNSMMDLHQ----------GA--------LMLLGPTM-NPK-VAFELSERIP---HLGLRMKEHCHRA 310 (447)
Q Consensus 254 ~igG~l~~~~~~~~~l~~~~~----------~~--------~~~~g~~~-~~~-~a~~~~~~~~---~l~~~~~~~~~~~ 310 (447)
+ |+++.++++++.++..+. .. ....++.. ... ++..++..+. .+....+++.+++
T Consensus 230 -~-g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~ 307 (398)
T 2fyf_A 230 -L-WLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS 307 (398)
T ss_dssp -E-EEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred -e-EEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6 899999998887754210 00 01112221 111 2222232221 1556677888999
Q ss_pred HHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccc
Q 013210 311 LIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 311 ~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
+++.+.|+++ +.++..+. |. . ..+.+++|.++...+...+.+.|... | +.++.|.
T Consensus 308 ~~l~~~L~~~~g~~~~~~~----~~----------~-~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~g~----- 363 (398)
T 2fyf_A 308 QRLYSWAQERPYTTPFVTD----PG----------L-RSQVVGTIDFVDDVDAGTVAKILRAN---G-IVDTEPY----- 363 (398)
T ss_dssp HHHHHHHHHSTTEEESCCS----GG----------G-BCSSEEEEEECTTSCHHHHHHHHHHT---T-CBCCSCC-----
T ss_pred HHHHHHHHHcCCceeccCC----hh----------h-cCCcEEEEECCCCCCHHHHHHHHHHC---C-cEEecCc-----
Confidence 9999999987 44544211 10 0 12338999996322356677777652 3 3444330
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. ...++.||||++ ..++++.++.+.++|+++.
T Consensus 364 --~----------------~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 364 --R----------------KLGRNQLRVAMF-PAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp --T----------------TTCSSEEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred --c----------------cCCCCEEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 0 112478999999 8778888888888887653
No 189
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.91 E-value=6.8e-23 Score=207.64 Aligned_cols=296 Identities=15% Similarity=0.091 Sum_probs=190.8
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCc-hhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLY-GGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y-~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++++.||++++.+.+++|+||++|+.+++++++++|| +++.++| +.+...+. ..|.++.+++.+
T Consensus 73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~-----~~G~~~~~v~~~~~ 145 (456)
T 2ez2_A 73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQE-----KNGAVFVDIVRDEA 145 (456)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHH-----HTTCEEEECBCGGG
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHH-----HcCCEEEEeccccc
Confidence 3566789999999999999999999999999999999999999 7778888 66555552 257777776542
Q ss_pred -------------CHHHHHHhhccCCc----eEEEEEcCCC-CCccccC---HHHHHHHHHhcCCEEEEeCCCCC-----
Q 013210 174 -------------DHEMVNSAIVQGRT----KVLYFESISN-PTLAVAN---IPELSRLAHDKGVTVVVDNTFSP----- 227 (447)
Q Consensus 174 -------------d~~~l~~~i~~~~t----~lV~i~~~~N-ptG~v~~---l~~I~~la~~~gi~livD~~~~~----- 227 (447)
|+++|++++ ++++ ++|++++|+| |+|.+.+ +++|+++|++||+++|+|++|+.
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~i-~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~ 224 (456)
T 2ez2_A 146 HDAGLNIAFKGDIDLKKLQKLI-DEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYF 224 (456)
T ss_dssp GCTTCCCSCTTCBCHHHHHHHH-HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHH-HhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccc
Confidence 789999998 4444 8999999998 9999987 99999999999999999999943
Q ss_pred -----CCCCcc---------CCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhh---hhhcCCCccHHHH
Q 013210 228 -----LVLSPA---------RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA---LMLLGPTMNPKVA 289 (447)
Q Consensus 228 -----~~~~~~---------~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~---~~~~g~~~~~~~a 289 (447)
+.+... ....|+++.|++|+++ .| + ||+++. ++++++.+...+... ....+.......+
T Consensus 225 ~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~-~-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 301 (456)
T 2ez2_A 225 IKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN-I-GGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEA 301 (456)
T ss_dssp HHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS-S-CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHH
T ss_pred ccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC-c-eeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHH
Confidence 333211 1236888889999876 44 4 499987 688888776554311 0011212112222
Q ss_pred --HHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----C--HH-
Q 013210 290 --FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----T--EE- 360 (447)
Q Consensus 290 --~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~--~~- 360 (447)
......++ ....++..++.+++.+.|++.+.++..|. .|.++++.+. + ..
T Consensus 302 ~a~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~p~-------------------~~~~~~~~~~~~~~~~~~~~ 360 (456)
T 2ez2_A 302 MAIGLREAMQ--YEYIEHRVKQVRYLGDKLKAAGVPIVEPV-------------------GGHAVFLDARRFCEHLTQDE 360 (456)
T ss_dssp HHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTTCCBCSSC-------------------CSSEEEEEHHHHTTTSCGGG
T ss_pred HHHHHHHHhH--HHHHHHHHHHHHHHHHHHhcCCCccccCC-------------------CceEEEEEhHHhcCCCChhh
Confidence 22222222 34455566777888888887655444332 3457777752 1 11
Q ss_pred H-HHHHHHHh-hcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHHHHHHHHHH
Q 013210 361 K-ANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQFEKALS 437 (447)
Q Consensus 361 ~-~~~l~~~l-~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~l~~al~ 437 (447)
- ...+...| .. .|+..++.|..+.- ..+... . ......+.||||++ .. .+++.++.+.++|+
T Consensus 361 ~~~~~l~~~L~~~---~gv~~~~~g~~~~~-~~~~~g--~--------~~~~~~~~iRis~~-~~~~t~e~i~~~~~~l~ 425 (456)
T 2ez2_A 361 FPAQSLAASIYVE---TGVRSMERGIISAG-RNNVTG--E--------HHRPKLETVRLTIP-RRVYTYAHMDVVADGII 425 (456)
T ss_dssp CHHHHHHHHHHHH---HSEECEEESHHHHC-BCTTTC--S--------BCCCSCCEEEEECC-TTTCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh---cCeeeecccccccc-cCcccc--c--------cccCCCCeEEEEeC-CCCCCHHHHHHHHHHHH
Confidence 1 23335555 33 24333344422110 000000 0 00011368999999 65 56666777666665
Q ss_pred Hh
Q 013210 438 RM 439 (447)
Q Consensus 438 ~~ 439 (447)
++
T Consensus 426 ~~ 427 (456)
T 2ez2_A 426 KL 427 (456)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 190
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.91 E-value=1.3e-22 Score=205.99 Aligned_cols=221 Identities=14% Similarity=0.154 Sum_probs=149.1
Q ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcCc-
Q 013210 93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPR- 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~- 161 (447)
+.++.++...+++++++++.+ .+.++||+||++|+..+++.++. .+++|++..+.|+++..........
T Consensus 88 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 167 (459)
T 4a6r_A 88 FFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMK 167 (459)
T ss_dssp TSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCT
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCCh
Confidence 345567788899999999984 56799999999999999998765 4689999999999865443221100
Q ss_pred -------ccCeeEEEeCCC---------C--------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHH
Q 013210 162 -------ACNITTTFVDIS---------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSR 210 (447)
Q Consensus 162 -------~~g~~~~~v~~~---------d--------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~ 210 (447)
.....+.+++.. | +++|++++.. +++++|++++++|++|.+.+ +++|.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~ 247 (459)
T 4a6r_A 168 YMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIER 247 (459)
T ss_dssp TTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred hhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence 011123344422 2 7888888832 56788999998899998887 999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh--hhhhhhcC
Q 013210 211 LAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--QGALMLLG 281 (447)
Q Consensus 211 la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--~~~~~~~g 281 (447)
+|++||+++|+||+|+++.... .....|+++ ++|.+++++.++ |++++++++++.+...+ ....+..+
T Consensus 248 l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~~~l-g~v~~~~~i~~~~~~~~~~~~~~t~~~ 324 (459)
T 4a6r_A 248 ICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGYLPI-GAVFVGKRVAEGLIAGGDFNHGFTYSG 324 (459)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHHHHHHHCTTHHHHHHCS
T ss_pred HHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCCCCc-cceeeCHHHHHHhhcCCCcccCCCCCC
Confidence 9999999999999997653221 122356654 789999766898 88999999998887321 11223455
Q ss_pred CCccHHHHHHHHccCCcHHHHHHHHH-HHHHHHHHHH
Q 013210 282 PTMNPKVAFELSERIPHLGLRMKEHC-HRALIFARRM 317 (447)
Q Consensus 282 ~~~~~~~a~~~~~~~~~l~~~~~~~~-~~~~~l~~~L 317 (447)
+.+++.++..++..++. ....++.. ++.+++.+.|
T Consensus 325 ~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~~l 360 (459)
T 4a6r_A 325 HPVCAAVAHANVAALRD-EGIVQRVKDDIGPYMQKRW 360 (459)
T ss_dssp CHHHHHHHHHHHHHHHH-TCHHHHHHHTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHH
Confidence 55555554444432211 11233444 4445555555
No 191
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=2.2e-23 Score=210.87 Aligned_cols=253 Identities=20% Similarity=0.218 Sum_probs=167.6
Q ss_pred ccccccCCH-HHHHHhhcCCC--CCCCCCccccCCCCchHHHHH-HHHHHHhCCCeEEE-eCChHHHHHHHHHHhcCCCC
Q 013210 65 SATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLNLS-RQMAALEGTEAAYC-TASGMSAISSVLMQLCSSGG 139 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~l~-~~ia~l~g~~~~~~-tsggt~A~~~al~~l~~~gd 139 (447)
+.++..|.+ +++.+.+...+ ++|++.|..+......++++. +++++++|.+.+.+ ++||++|+..++++++++||
T Consensus 53 ~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd 132 (447)
T 3h7f_A 53 SENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGE 132 (447)
T ss_dssp TCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTC
T ss_pred CCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCC
Confidence 344444444 55554443333 233332322222222334444 99999999988776 99999999999999999999
Q ss_pred eEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC------CCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 140 HVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 140 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
+|+++.++|+++............+..+..++. .|+++|+++++..++++|++++++||++. ++++|.++|+
T Consensus 133 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~ 210 (447)
T 3h7f_A 133 RLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIAD 210 (447)
T ss_dssp EEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHH
T ss_pred EEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHH
Confidence 999999998773211000000001234444442 38999999884457889999999998876 9999999999
Q ss_pred hcCCEEEEeCCC-CCC-----CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccH-
Q 013210 214 DKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP- 286 (447)
Q Consensus 214 ~~gi~livD~~~-~~~-----~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~- 286 (447)
+||+++|+|++| .++ ..++. .++|+++.|+||++++ .+ ||++++++++++.+....... ..++...+
T Consensus 211 ~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G--~~-gG~i~~~~~~~~~l~~~~~~~--~~~~~~~~~ 284 (447)
T 3h7f_A 211 EVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGG--GR-SGLIVGKQQYAKAINSAVFPG--QQGGPLMHV 284 (447)
T ss_dssp HHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCC--CS-CEEEEECGGGHHHHHHHHTTT--TCSSCCHHH
T ss_pred HcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCC--CC-eEEEEECHHHHHHHhhhcCCc--ccCCccHHH
Confidence 999999999997 322 12222 2579999999999974 45 499999999888887654322 23333322
Q ss_pred HHH-HHHHcc-CC-cHHHHHHHHHHHHHHHHHHHHhC-----CCeee
Q 013210 287 KVA-FELSER-IP-HLGLRMKEHCHRALIFARRMKKL-----GLKVL 325 (447)
Q Consensus 287 ~~a-~~~~~~-~~-~l~~~~~~~~~~~~~l~~~L~~~-----~~~v~ 325 (447)
.++ ..++.. .+ .+..+.+++.++++++.+.|++. ++++.
T Consensus 285 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~ 331 (447)
T 3h7f_A 285 IAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVV 331 (447)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEG
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEe
Confidence 222 222222 23 46677788899999999999876 66554
No 192
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.91 E-value=4.1e-24 Score=216.67 Aligned_cols=294 Identities=11% Similarity=0.112 Sum_probs=189.5
Q ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcC-c
Q 013210 93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFP-R 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~-~ 161 (447)
++++.++...+++++++++.+ .+.++||+||++|+..+++.+.. +| ++||+.++.|++.......... .
T Consensus 112 ~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 191 (457)
T 3tfu_A 112 FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPH 191 (457)
T ss_dssp SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC
T ss_pred ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCc
Confidence 355567788899999999995 46799999999999999988764 55 4899999999876433311100 0
Q ss_pred --------ccCeeEEEeCC-------CCHHHHHHhhcc--CCceEEEEEc-CCCCCccccC----HHHHHHHHHhcCCEE
Q 013210 162 --------ACNITTTFVDI-------SDHEMVNSAIVQ--GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTV 219 (447)
Q Consensus 162 --------~~g~~~~~v~~-------~d~~~l~~~i~~--~~t~lV~i~~-~~NptG~v~~----l~~I~~la~~~gi~l 219 (447)
.....+.+++. .|+++|++++++ +++++|++++ ++|++|.+.+ +++|.++|++||+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill 271 (457)
T 3tfu_A 192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL 271 (457)
T ss_dssp ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 00112333333 378899998832 6789999999 9999999886 999999999999999
Q ss_pred EEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH--h--hhhhhhcCCCccHHH
Q 013210 220 VVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL--H--QGALMLLGPTMNPKV 288 (447)
Q Consensus 220 ivD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--~--~~~~~~~g~~~~~~~ 288 (447)
|+||+|+++.... .....|++ |++|.+++...++ |++++++++++.+... + ....+..++.+++.+
T Consensus 272 I~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~l-G~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aa 348 (457)
T 3tfu_A 272 IFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSL-AATLCTADVAHTISAGAAGALMHGPTFMANPLACAV 348 (457)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCC-EEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHH
T ss_pred EEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcce-EEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHH
Confidence 9999997653221 11235666 6899998643688 8999999998888532 1 111223333343434
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 289 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 289 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
+.+++..++. ....++..++.+++.+.|+++.. +|.+... .+.|.+++|.+........+.+.
T Consensus 349 a~aaL~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~v-------------r~~G~~~~i~l~~~~~~~~~~~~ 411 (457)
T 3tfu_A 349 SVASVELLLG-QDWRTRITELAAGLTAGLDTARA---LPAVTDV-------------RVCGAIGVIECDRPVDLAVATPA 411 (457)
T ss_dssp HHHHHHHHHT-SCHHHHHHHHHHHHHHHHGGGGG---STTEEEE-------------EECSSCEEEEESSCCCHHHHHHH
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhc---CCCeeee-------------ecCCeEEEEEECCcccHHHHHHH
Confidence 4333332211 12455667777888888876421 1111111 13577999999743335667777
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
|... |+ .+. | ..+.+||++. ...+++.++.+.++|+++
T Consensus 412 l~~~---Gv-~v~----------~------------------~~~~lRi~p~-~~~t~eei~~~l~~L~~~ 449 (457)
T 3tfu_A 412 ALDR---GV-WLR----------P------------------FRNLVYAMPP-YICTPAEITQITSAMVEV 449 (457)
T ss_dssp HHHT---TE-ECC----------C------------------BTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHC---Ce-EEE----------e------------------cCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 7652 32 211 1 0257999987 555555555555555443
No 193
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.91 E-value=2.7e-23 Score=206.95 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=187.6
Q ss_pred HHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccC--eeEEEeCC------CC
Q 013210 104 LSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI------SD 174 (447)
Q Consensus 104 l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g--~~~~~v~~------~d 174 (447)
+++.+++++|.+.. +++++|++|+.+++++++++||+|+++.++|+++...+.. . ...| .++..++. .|
T Consensus 74 ~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~d 151 (405)
T 2vi8_A 74 ARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSP-V-NFSGVQYNFVAYGVDPETHVID 151 (405)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCT-T-SHHHHHSEEEEECBCTTTCSBC
T ss_pred HHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccch-h-hhccceeEEEecccccccCCcC
Confidence 45799999998775 4567889999999999999999999999999877431100 0 0123 35555543 28
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-C---CCCccCC-CCeEEEeCCCcccc
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-L---VLSPARL-GADVVVHSISKFIS 249 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~---~~~~~~~-g~di~~~S~sK~~g 249 (447)
+++|++++.+.++++|+++ ++|. |...++++|.++|++||+++|+|++|+. . ...+..+ +.|+++.|+||+++
T Consensus 152 ~~~l~~~i~~~~~~~v~~~-~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~ 229 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAA-AAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLR 229 (405)
T ss_dssp HHHHHHHHHHHCCSEEEEC-CSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTC
T ss_pred HHHHHHHHHhcCCeEEEEe-CCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCC
Confidence 9999999833378888874 3443 5777999999999999999999999952 1 1111111 57899999999998
Q ss_pred CCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCC-CccHHHHH-HHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013210 250 GGADIIAGAVCGPANLVNSMMDLHQGALMLLGP-TMNPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVL 325 (447)
Q Consensus 250 ~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~-~~~~~~a~-~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~ 325 (447)
++. ||++++++++++.+....... ..++ .....++. .++.. ...+....+++.++++++.+.|++.+.++.
T Consensus 230 g~~---gG~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 304 (405)
T 2vi8_A 230 GPR---GGMILCQEQFAKQIDKAIFPG--IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLV 304 (405)
T ss_dssp CCS---CEEEEECHHHHHHHHHHHTTT--TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred CCC---CeEEEEcHHHHHHHHhhhccc--ccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 432 399999998888887654322 2222 23333332 22222 234566778889999999999998866665
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
.|. +.+.++++.++.. .....+.+.|... | +.+..|.. |.... +
T Consensus 305 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~------~~~~~----~--- 349 (405)
T 2vi8_A 305 SGG------------------TDNHLLLVDLRPQQLTGKTAEKVLDEV---G-ITVNKNTI------PYDPE----S--- 349 (405)
T ss_dssp GGS------------------CSSSEEEEECGGGTCCHHHHHHHHHHH---T-EECEEECC------TTCSS----C---
T ss_pred cCC------------------CCceEEEEEccCCCCCHHHHHHHHHHc---C-ceeccCcC------ccccC----C---
Confidence 432 2355889998631 1245566666542 3 45555531 10000 0
Q ss_pred HHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHh
Q 013210 405 KALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~ 439 (447)
...++.+|||++ . ..+++.++.+.++|+++
T Consensus 350 ----~~~~~~iRis~~-~~~~~~~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 350 ----PFVTSGIRIGTA-AVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp ----TTTCSEEEEECH-HHHHTTCCHHHHHHHHHHHHHH
T ss_pred ----CCCCCceEEeee-eeeecCCCHHHHHHHHHHHHHH
Confidence 012467999999 5 23466666666666554
No 194
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.91 E-value=7e-23 Score=206.01 Aligned_cols=295 Identities=12% Similarity=0.094 Sum_probs=175.6
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc--------CCCCeEEEeCCCchhHHHHHHhhcCc---
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFPR--- 161 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~--- 161 (447)
++..+...++++.++++++ .+.++||+||++|+..+++.++ ..+++|++.++.|+++..........
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 147 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR 147 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccc
Confidence 4456778899999999985 4679999999999999998876 34689999999999876433111000
Q ss_pred -----ccCe--eEEEeCCC--------CHHHHHHhhcc---CCceEEEEEcCCC-CCccccC----HHHHHHHHHhcCCE
Q 013210 162 -----ACNI--TTTFVDIS--------DHEMVNSAIVQ---GRTKVLYFESISN-PTLAVAN----IPELSRLAHDKGVT 218 (447)
Q Consensus 162 -----~~g~--~~~~v~~~--------d~~~l~~~i~~---~~t~lV~i~~~~N-ptG~v~~----l~~I~~la~~~gi~ 218 (447)
.... .+.+++.+ |+++|++++++ +++++|++++++| ++|.+.+ +++|.++|++||++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 227 (430)
T 3i4j_A 148 RELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGII 227 (430)
T ss_dssp --------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCE
T ss_pred ccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 0000 23334443 44888888842 5678888888898 9999877 99999999999999
Q ss_pred EEEeCCCCCCCCC-----ccCC-C--CeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHH----hhhhhhhcCCCcc
Q 013210 219 VVVDNTFSPLVLS-----PARL-G--ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDL----HQGALMLLGPTMN 285 (447)
Q Consensus 219 livD~~~~~~~~~-----~~~~-g--~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~----~~~~~~~~g~~~~ 285 (447)
+|+||+|+++... .... + .|++ ++||.+++ | .|+ |++++++++++.+... .. ..+..++.++
T Consensus 228 li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK~l~~-G~~r~-G~~~~~~~i~~~~~~~~~~~~~-~~t~~~~~~~ 302 (430)
T 3i4j_A 228 FIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGKGLAA-GYAPL-AGLLAAPQVYETVMGGSGAFMH-GFTYAGHPVS 302 (430)
T ss_dssp EEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECGGGTT-TSSCC-EEEEECHHHHHHHHHTTCBCCC-CCTTTTCHHH
T ss_pred EEEechhhCCCcccchhhhhhhcCCCCcEE--EEcccccC-Ccccc-EEEEECHHHHHHHhccCCcccc-cCCCCCCHHH
Confidence 9999999665321 1222 3 4555 58899995 8 999 8999999999888763 22 1123334444
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH-
Q 013210 286 PKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE- 360 (447)
Q Consensus 286 ~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~- 360 (447)
+.++..++..++. ....++..++.+++.+.|++ ++.....+ +.|.++++.+.+..
T Consensus 303 ~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~ 362 (430)
T 3i4j_A 303 VAAGLSVLDIVER-EDLTGAAKERGAQLLAGLQALQARFPQMMQVR-------------------GTGLLLGVVLGDLAT 362 (430)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEEC----
T ss_pred HHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------EEEEEEEEEeccccc
Confidence 4444443332211 12344455555555555544 33211111 35678999886321
Q ss_pred --------HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 361 --------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 361 --------~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
.+..+.+.|... |+ .+..+.. +. .+...+.+||+++ ...+++.++.+
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~---Gv-~v~~~~~------~~--------------~~~~~~~iRi~~~-~~~t~e~i~~~ 417 (430)
T 3i4j_A 363 GQAFETPGIASRIGAAALKR---GL-ITYPGSG------AE--------------PNGRGDHLLLGPP-LSITAAEVDGL 417 (430)
T ss_dssp --------CHHHHHHHHHHT---TE-ECC-------------------------------CEEEECCC-TTCCHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHhC---CC-EEEeccc------cc--------------CCCCCCEEEEECC-CCCCHHHHHHH
Confidence 124566666642 32 2222200 00 1223578999988 65555556555
Q ss_pred HHHHHHh
Q 013210 433 EKALSRM 439 (447)
Q Consensus 433 ~~al~~~ 439 (447)
.++|+++
T Consensus 418 l~~l~~~ 424 (430)
T 3i4j_A 418 LALLAGA 424 (430)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 195
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.91 E-value=1.2e-22 Score=206.20 Aligned_cols=175 Identities=11% Similarity=0.119 Sum_probs=128.8
Q ss_pred cCCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcCc--
Q 013210 94 SRHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPR-- 161 (447)
Q Consensus 94 ~r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~-- 161 (447)
..+..+...+++++++++.+ .+.++||+||++|+..+++.+.. .+++|++..+.||+...........
T Consensus 90 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 169 (460)
T 3gju_A 90 VGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDL 169 (460)
T ss_dssp TTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGG
T ss_pred cccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcc
Confidence 34556778899999999874 46799999999999999988763 4689999999998865443211000
Q ss_pred ------ccCeeEEEeC--C----CC------------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHH
Q 013210 162 ------ACNITTTFVD--I----SD------------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSR 210 (447)
Q Consensus 162 ------~~g~~~~~v~--~----~d------------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~ 210 (447)
.....+..++ . +| +++|++++.+ +++++|++++++|++|.+.+ +++|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~ 249 (460)
T 3gju_A 170 FHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQA 249 (460)
T ss_dssp GTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHH
T ss_pred cccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHH
Confidence 0111233343 2 22 6889988832 56889999999999998776 999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCCc-----c--CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH
Q 013210 211 LAHDKGVTVVVDNTFSPLVLSP-----A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271 (447)
Q Consensus 211 la~~~gi~livD~~~~~~~~~~-----~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~ 271 (447)
+|++||+++|+||+|+++.... . ....|++ +++|.+++.+.|+ |++++++++++.+..
T Consensus 250 l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~l~gG~~~l-g~v~~~~~i~~~~~~ 314 (460)
T 3gju_A 250 VLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI--TIAKGLTSAYAPL-SGVIVADRVWQVLVQ 314 (460)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--EECGGGTTTSSCC-EEEEEEHHHHHHHHH
T ss_pred HHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee--eeehhhcCCCCCe-EEEEECHHHHHHHhc
Confidence 9999999999999997663221 1 1234555 5789998633788 899999999888863
No 196
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.91 E-value=3.8e-23 Score=208.04 Aligned_cols=292 Identities=13% Similarity=0.139 Sum_probs=187.4
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc---------Ccc
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF---------PRA 162 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~---------~~~ 162 (447)
+..+...++++.++++++ .+.++||+||++|+..+++.+. ..+++|++.++.|++......... +..
T Consensus 82 ~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 161 (433)
T 1zod_A 82 MLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAA 161 (433)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCC
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCC
Confidence 345667889999999986 4679999999999999998653 335799999999987654332110 111
Q ss_pred cCeeEEEeCC------C---------CHHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEE
Q 013210 163 CNITTTFVDI------S---------DHEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVV 220 (447)
Q Consensus 163 ~g~~~~~v~~------~---------d~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~li 220 (447)
.|+....++. + |+++|++++++ +++++|++++++||+|.+.+ +++|.++|++||+++|
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li 241 (433)
T 1zod_A 162 VGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI 241 (433)
T ss_dssp TTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEE
T ss_pred CCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEE
Confidence 2444333321 1 38999998843 57888888887899998766 9999999999999999
Q ss_pred EeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh-hhhhcCCCccHHHHHHH
Q 013210 221 VDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVAFEL 292 (447)
Q Consensus 221 vD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~a~~~ 292 (447)
+||+|+++.... .....|+ .|++|.+++ |.|+ |++++++++++.+...... ..+..++.+++.++..+
T Consensus 242 ~DEv~~~~g~~g~~~~~~~~~~~~di--~s~sK~~~~-G~~i-g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aa 317 (433)
T 1zod_A 242 LDEAQTGVGRTGTMFACQRDGVTPDI--LTLSKTLGA-GLPL-AAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRV 317 (433)
T ss_dssp EECTTTTTTTTSSSSTHHHHTCCCSE--EEECHHHHT-TSSC-EEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHH
T ss_pred EeccccCCCcCchHhHHhhcCCCCCE--EEecccccC-CCCe-eEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHH
Confidence 999997653211 1223455 478899996 8998 9999999998888653210 01122333333333333
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------H
Q 013210 293 SERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------E 360 (447)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~ 360 (447)
+..++. ....+++.++++++.+.|++. +.....+ +.|.++++.++.. .
T Consensus 318 l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~ 377 (433)
T 1zod_A 318 LDVVQR-DGLVARANVMGDRLRRGLLDLMERFDCIGDVR-------------------GRGLLLGVEIVKDRRTKEPADG 377 (433)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEEEEETTTTEECTT
T ss_pred HHHHHh-CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------EEEEEEEEEEecCccccCCChH
Confidence 322211 124456677777787777653 3211111 3567889887521 2
Q ss_pred HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
....+.+.|... | +.+..|+. .+ .++.+|||++ ...+++.++.+.++|+++
T Consensus 378 ~~~~~~~~l~~~---G-v~v~~~~~----------------------~~-~~~~lRi~~~-~~~t~~~i~~~l~~l~~~ 428 (433)
T 1zod_A 378 LGAKITRECMNL---G-LSMNIVQL----------------------PG-MGGVFRIAPP-LTVSEDEIDLGLSLLGQA 428 (433)
T ss_dssp HHHHHHHHHHHT---T-EECCEECC----------------------TT-SCCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---C-CeEeccCC----------------------CC-CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 356677777642 3 34333310 01 1478999988 666667677666666554
No 197
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.91 E-value=3.8e-23 Score=208.22 Aligned_cols=219 Identities=14% Similarity=0.182 Sum_probs=151.0
Q ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhh---------cCccc
Q 013210 96 HFNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FPRAC 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~---------~~~~~ 163 (447)
+.++...++++++++++ +.+.++||+||++|+..+++.+.. ++++|++..+.|+++....... .+...
T Consensus 92 ~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 171 (434)
T 3l44_A 92 TPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA 171 (434)
T ss_dssp SCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSST
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcC
Confidence 34667788999999998 567899999999999999987654 6789999999998764322100 00001
Q ss_pred Ce------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013210 164 NI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS 231 (447)
Q Consensus 164 g~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~ 231 (447)
++ .+..++.+|+++|+++++. +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++...
T Consensus 172 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g 251 (434)
T 3l44_A 172 GVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFM 251 (434)
T ss_dssp TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSS
T ss_pred CCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceecc
Confidence 11 4566677799999998842 56889999999999999987 999999999999999999999765211
Q ss_pred c------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 232 P------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 232 ~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
. .....|+ .|+||.++ .|.++ |++++++++++.+..... ...+..++.+.+.++..++..++. ....
T Consensus 252 ~~~~~~~~~~~~di--~t~sK~~~-~G~~i-G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~ 326 (434)
T 3l44_A 252 YGGAQDLLGVTPDL--TALGKVIG-GGLPI-GAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLY 326 (434)
T ss_dssp SSCHHHHHTCCCSE--EEEEGGGG-TTSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHH
T ss_pred ccHHHHHcCCCCCe--eehhhhhc-CCcCe-eeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHH
Confidence 1 1123454 46889998 68999 888999998877654211 111233333344444444432222 2344
Q ss_pred HHHHHHHHHHHHHHHh
Q 013210 304 KEHCHRALIFARRMKK 319 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~ 319 (447)
++..++.+++.+.|++
T Consensus 327 ~~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 327 EKLDELGATLEKGILE 342 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666654
No 198
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.90 E-value=1.6e-22 Score=205.38 Aligned_cols=298 Identities=15% Similarity=0.107 Sum_probs=189.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC----CCCe---EEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS----SGGH---VVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~----~gd~---Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
.+...++++.++++++.+.++||+||++|+.+++++++. +||+ |+++.+.|..+...+. ..|.++..+
T Consensus 75 ~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~-----~~g~~~~~~ 149 (467)
T 1ax4_A 75 SRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-----LNGCKAINI 149 (467)
T ss_dssp CHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-----HTTCEEEEC
T ss_pred CccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh-----ccCCceecc
Confidence 356789999999999999999999999999999999888 9998 9998555566555552 135555443
Q ss_pred C---------------CCCHHHHHHhhcc---CCceEEEEEcCCCCC-ccccC---HHHHHHHHHhcCCEEEEeCCCCC-
Q 013210 171 D---------------ISDHEMVNSAIVQ---GRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFSP- 227 (447)
Q Consensus 171 ~---------------~~d~~~l~~~i~~---~~t~lV~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~~- 227 (447)
+ ..|+++|+++++. +++++|++++|+||+ |.+.+ +++|+++|++||+++|+|+++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~ 229 (467)
T 1ax4_A 150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE 229 (467)
T ss_dssp BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred cccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhh
Confidence 1 1289999999943 369999999999999 78765 67999999999999999998631
Q ss_pred -----------C-CCCccC------CCCeEEEeCCCccccCCCCeeEEEEEcC-h-HHHHHHHHHhhhh--hhhcCCCcc
Q 013210 228 -----------L-VLSPAR------LGADVVVHSISKFISGGADIIAGAVCGP-A-NLVNSMMDLHQGA--LMLLGPTMN 285 (447)
Q Consensus 228 -----------~-~~~~~~------~g~di~~~S~sK~~g~~g~~igG~l~~~-~-~~~~~l~~~~~~~--~~~~g~~~~ 285 (447)
. ..++.. ..+|+++.|+||++|++ +||+++.+ + ++++.+...+... ....+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (467)
T 1ax4_A 230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG 306 (467)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccc
Confidence 1 112111 13688999999999865 45888877 7 8887776544311 111122111
Q ss_pred -HHHHHH-HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-------e
Q 013210 286 -PKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-------M 356 (447)
Q Consensus 286 -~~~a~~-~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-------l 356 (447)
...+.. .+..... .+.+++..++++++.+.|++.+..+..|. .|.++++. +
T Consensus 307 ~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 366 (467)
T 1ax4_A 307 RDMAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLREAGIPIQYPT-------------------GGHAVFVDCKKLVPQI 366 (467)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTTCCBCSSC-------------------CSSEEEEESTTTCTTS
T ss_pred hHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhCCCCcccCC-------------------CceEEEEehhhhcccc
Confidence 111111 2222222 22444555777889999987554443332 34577777 4
Q ss_pred CC-HHHHHHHHHHh-hcccccccccccc-cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHHHHH
Q 013210 357 ET-EEKANRLMNYL-QNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQF 432 (447)
Q Consensus 357 ~~-~~~~~~l~~~l-~~~~~~g~~~vs~-G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~l 432 (447)
+. ......+...| ... | +.++. |...... .+. .... .....+.||||++ .. .+++.++.+
T Consensus 367 ~~~~~~~~~l~~~L~~~~---g-v~v~~~g~~~~~~-~~~--~g~~--------~~~~~~~iRls~~-~~~~t~e~i~~~ 430 (467)
T 1ax4_A 367 PGDQFPAQAVINALYLES---G-VRAVEIGSFLLGR-DPA--TGEQ--------KHADMEFMRLTIA-RRVYTNDHMDYI 430 (467)
T ss_dssp CGGGCHHHHHHHHHHHHH---C-EECEEESHHHHCB-CTT--TCSB--------CCCSCCEEEEECC-TTSSCHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhc---C-ceeeecCcccccc-ccc--cccc--------cccccceEEEecc-cccCCHHHHHHH
Confidence 32 11356777777 542 3 45554 4221000 000 0000 0011378999999 54 566667776
Q ss_pred HHHHHHh
Q 013210 433 EKALSRM 439 (447)
Q Consensus 433 ~~al~~~ 439 (447)
.++|+++
T Consensus 431 ~~~l~~~ 437 (467)
T 1ax4_A 431 ADALIGL 437 (467)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 6666554
No 199
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.90 E-value=9e-23 Score=206.40 Aligned_cols=291 Identities=11% Similarity=0.139 Sum_probs=187.1
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcC----
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFP---- 160 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~---- 160 (447)
++..+...++++.++++++ .+.++||+||++|+.++++.+.. ++++|++..+.|++..........
T Consensus 89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~ 168 (449)
T 3a8u_X 89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGN 168 (449)
T ss_dssp SCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHH
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhh
Confidence 4556677899999999985 46799999999999999987753 678999999999876432211110
Q ss_pred ------cccCeeEEEeCC--------CC--------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHHH
Q 013210 161 ------RACNITTTFVDI--------SD--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRL 211 (447)
Q Consensus 161 ------~~~g~~~~~v~~--------~d--------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~l 211 (447)
...++....++. .| +++|++++++ +++++|++++.+|++|.+.+ +++|.++
T Consensus 169 ~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l 248 (449)
T 3a8u_X 169 RKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREI 248 (449)
T ss_dssp HTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHH
Confidence 011333333221 14 8999998842 46788888888889999888 9999999
Q ss_pred HHhcCCEEEEeCCCCCCCCC--c-----cCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh--------hh
Q 013210 212 AHDKGVTVVVDNTFSPLVLS--P-----ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH--------QG 275 (447)
Q Consensus 212 a~~~gi~livD~~~~~~~~~--~-----~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~--------~~ 275 (447)
|++||+++|+||+|+++... . .....|++ |+||.+++ | .|+ |++++++++++.+.... ..
T Consensus 249 ~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (449)
T 3a8u_X 249 CNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPM-GAVIASTEIYQTFMNQPTPEYAVEFPH 324 (449)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCC-EEEEEEHHHHHHHHTCSSCTTSCSSCC
T ss_pred HHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCce-EEEEECHHHHHHhhccCcccccccccc
Confidence 99999999999999655321 1 11235765 68899996 6 788 78888888888776431 00
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..+..++.+...++..++..++. ....+++.++.+++.+.|++.+. .|.....+ +.|.++++.
T Consensus 325 ~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~-------------~~g~~~~i~ 387 (449)
T 3a8u_X 325 GYTYSAHPVACAAGLAALCLLQK-ENLVQSVAEVAPHFEKALHGIKG---AKNVIDIR-------------NFGLAGAIQ 387 (449)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHTTTT---STTEEEEE-------------EETTEEEEE
T ss_pred cCCCcccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHhc---CCCeEEEe-------------eeEEEEEEE
Confidence 11122222222222333322111 12556778888889898877431 01000001 356799999
Q ss_pred eCCHH-----HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013210 356 METEE-----KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 430 (447)
Q Consensus 356 l~~~~-----~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~ 430 (447)
++... ....+.+.|... | +.++.+ | +.||||++ ...+++.++
T Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------g---~~iRis~~-~~~t~~~i~ 434 (449)
T 3a8u_X 388 IAPRDGDAIVRPFEAGMALWKA---G-FYVRFG-------------------------G---DTLQFGPT-FNSKPQDLD 434 (449)
T ss_dssp ECCBTTBSSHHHHHHHHHHHHH---T-EECEEE-------------------------T---TEEEECCC-TTCCHHHHH
T ss_pred EecCcccccccHHHHHHHHHHC---C-cEEecC-------------------------C---CEEEEECC-CcCCHHHHH
Confidence 97421 123566666542 3 232221 1 67999988 666777777
Q ss_pred HHHHHHHHh
Q 013210 431 QFEKALSRM 439 (447)
Q Consensus 431 ~l~~al~~~ 439 (447)
.+.++|+++
T Consensus 435 ~~l~~l~~~ 443 (449)
T 3a8u_X 435 RLFDAVGEV 443 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666654
No 200
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.90 E-value=3.2e-22 Score=202.59 Aligned_cols=293 Identities=15% Similarity=0.114 Sum_probs=181.2
Q ss_pred ccCCCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCc------
Q 013210 93 YSRHFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPR------ 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~------ 161 (447)
+..+..+...+++++++++.+ .+.++||+||++|+..+++.+.. .+++|++..+.||+...........
T Consensus 101 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 180 (453)
T 4ffc_A 101 FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKS 180 (453)
T ss_dssp TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred cCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccccc
Confidence 345567778899999999986 35799999999999999976542 4579999999999876544221110
Q ss_pred ---ccCeeEEEeCCC----C-------------HHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCC
Q 013210 162 ---ACNITTTFVDIS----D-------------HEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 217 (447)
Q Consensus 162 ---~~g~~~~~v~~~----d-------------~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi 217 (447)
.....+..++.. | ++.|++++...++++|++++++++.|.+.+ +++|.++|++||+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~ 260 (453)
T 4ffc_A 181 QFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGV 260 (453)
T ss_dssp TSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 011134444433 3 356666663345677777777777777766 9999999999999
Q ss_pred EEEEeCCCCCCCCCc-----cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHH
Q 013210 218 TVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292 (447)
Q Consensus 218 ~livD~~~~~~~~~~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~ 292 (447)
++|+||+|+++.... ...++...+.|++|.+++ |.|+ |++++++++++.+..... ..+..++.+.+.++..+
T Consensus 261 llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~-G~~~-G~~~~~~~i~~~~~~~~~-~~t~~~~~~~~aaa~aa 337 (453)
T 4ffc_A 261 VFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAG-GMPL-SAVTGRAELMDAVYAGGL-GGTYGGNPVTCAAAVAA 337 (453)
T ss_dssp EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGT-TSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHHHHHHHH
T ss_pred EEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcC-CcCe-EEEEECHHHHhhhcccCc-CCCCCcCHHHHHHHHHH
Confidence 999999997653221 111333333458899997 8999 888889998877754433 22233444444444443
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-------CHHH
Q 013210 293 SERIPHLGLRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-------TEEK 361 (447)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-------~~~~ 361 (447)
+..++. ....++..++.+++.+.|++ ++.....+ +.|.++++.+. ....
T Consensus 338 l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~ 397 (453)
T 4ffc_A 338 LGVMRE-LDLPARARAIEASVTSRLSALAEEVDIIGEVR-------------------GRGAMLAIEIVKPGTLEPDAAL 397 (453)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEE-------------------EETTEEEEEEBCTTSCCBCHHH
T ss_pred HHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-------------------eeceEEEEEEecCcccCCCHHH
Confidence 332211 12334445555555555543 33311111 46779999983 3445
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
...+.+.+... | +.+..+ +...+.+||+++ ...+++.++.+.++|++
T Consensus 398 ~~~~~~~l~~~---G-v~v~~~-------------------------~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~ 444 (453)
T 4ffc_A 398 TKSIAAEALSQ---G-VLILTC-------------------------GTFGNVIRLLPP-LVIGDDLLDEGITALSD 444 (453)
T ss_dssp HHHHHHHHHHT---T-EECCEE-------------------------CTTSCEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---C-CEEecC-------------------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 66777777652 3 232222 112367999988 65555555555555444
No 201
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.90 E-value=6.7e-23 Score=208.78 Aligned_cols=294 Identities=13% Similarity=0.161 Sum_probs=188.6
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcCc---
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPR--- 161 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~--- 161 (447)
...++...+++++++++.+ .+.++|++||++|+..+++.+.. .+++||+..+.|+++..........
T Consensus 93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 172 (476)
T 3i5t_A 93 YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGN 172 (476)
T ss_dssp TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGG
T ss_pred ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhh
Confidence 4566778899999999984 57899999999999999988753 3579999999998876443211000
Q ss_pred -----ccCeeEEEeCC-------C-C--------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHHHHH
Q 013210 162 -----ACNITTTFVDI-------S-D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 162 -----~~g~~~~~v~~-------~-d--------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~la~ 213 (447)
.....+.+++. + + +++|+++++. +++++|++++++|++|.+.+ +++|.++|+
T Consensus 173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~ 252 (476)
T 3i5t_A 173 WPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICE 252 (476)
T ss_dssp CTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred ccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH
Confidence 00112333332 1 1 7889888842 56899999999999998665 999999999
Q ss_pred hcCCEEEEeCCCCCCCCC-----cc-CC--CCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh------hhhhh
Q 013210 214 DKGVTVVVDNTFSPLVLS-----PA-RL--GADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH------QGALM 278 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~-----~~-~~--g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~------~~~~~ 278 (447)
+||+++|+||+|+++... .. .+ ..|+++ ++|.+++ | .++ |++++++++++.+.... ....+
T Consensus 253 ~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~-G~~pl-g~v~~~~~i~~~~~~~~~~~~~~~~~~t 328 (476)
T 3i5t_A 253 KHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTS-GYVPL-GGLAISEAVLARISGENAKGSWFTNGYT 328 (476)
T ss_dssp HTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGT-TSSCC-EEEEECHHHHHTTSGGGCTTCEECCCCT
T ss_pred HcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcC-CCcCe-EEEEECHHHHHHHhcCCcccccccccCC
Confidence 999999999999765321 11 22 356664 7899995 7 898 88889999988776431 11122
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
..++++++.++.+++..++. ....++..++.+++.+.|+++.. +|.... ..+.|.++.+.+..
T Consensus 329 ~~~np~a~aAa~aaL~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~-------------v~~~G~~~~i~~~~ 391 (476)
T 3i5t_A 329 YSNQPVACAAALANIELMER-EGIVDQAREMADYFAAALASLRD---LPGVAE-------------TRSVGLVGCVQCLL 391 (476)
T ss_dssp TTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHTTTT---STTEEE-------------EEEETTEEEEEECC
T ss_pred CCcCHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc---CCCeEE-------------EEecCceeEEEEec
Confidence 33444444444444332211 23456677788888888875431 111111 11467799999863
Q ss_pred HH-----------HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----C
Q 013210 359 EE-----------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----G 423 (447)
Q Consensus 359 ~~-----------~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~ 423 (447)
.. ....+.+.|.. .|++. . | .| +.|||++. . +
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~---~Gv~v-~----------~---------------~g---~~iRi~p~-l~~t~e 438 (476)
T 3i5t_A 392 DPTRADGTAEDKAFTLKIDERCFE---LGLIV-R----------P---------------LG---DLCVISPP-LIISRA 438 (476)
T ss_dssp C-----CCHHHHHHHHHHHHHHHH---TTEEC-E----------E---------------ET---TEEEECCC-TTCCHH
T ss_pred CccccccccchhHHHHHHHHHHHH---CCCEE-E----------e---------------cC---CEEEEECC-CCCCHH
Confidence 21 24556666654 23211 1 1 02 67999966 4 4
Q ss_pred CHHHHHHHHHHHHHHhhhc
Q 013210 424 TLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 424 ~~~~~i~~l~~al~~~~~~ 442 (447)
++++.++.|.++++++.+.
T Consensus 439 ~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 439 QIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665543
No 202
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.90 E-value=7.8e-23 Score=208.02 Aligned_cols=257 Identities=12% Similarity=0.143 Sum_probs=168.7
Q ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcC--
Q 013210 93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFP-- 160 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~-- 160 (447)
+.++.++...+++++++++.+ .+.++|++||++|+..+++.+.. .+++||+..+.|+++.........
T Consensus 93 ~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~ 172 (472)
T 3hmu_A 93 FFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMA 172 (472)
T ss_dssp SSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCH
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCCh
Confidence 334567778899999999985 46799999999999999988764 467999999999886543311110
Q ss_pred -------cccCeeEEEeCCC---------C--------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHH
Q 013210 161 -------RACNITTTFVDIS---------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELS 209 (447)
Q Consensus 161 -------~~~g~~~~~v~~~---------d--------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~ 209 (447)
...+ +..++.. | +++|++++.. +++++|++|+++|++|.+.+ +++|.
T Consensus 173 ~~~~~~~~~~~--~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~ 250 (472)
T 3hmu_A 173 GMHAQSGLIPD--VHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQ 250 (472)
T ss_dssp HHHHTTCCCSS--EEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHH
T ss_pred hhccccCCCCC--cEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHH
Confidence 1012 3333322 1 7888888832 56889999999999999987 99999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh-hhhhhhcC
Q 013210 210 RLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGALMLLG 281 (447)
Q Consensus 210 ~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~~~~g 281 (447)
++|++||+++|+||+|+++.... .....|+++ ++|.+++.+.++ |++++++++++.+.... ....+..+
T Consensus 251 ~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~~pl-G~v~~~~~i~~~~~~~~~~~~~t~~~ 327 (472)
T 3hmu_A 251 RICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGYAPI-GGSIVCDEVAHVIGKDEFNHGYTYSG 327 (472)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCC-EEEEEEHHHHHHHTTSCBCCCCTTTT
T ss_pred HHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCCcce-EEEEECHHHHHhcccCCccccCCCCC
Confidence 99999999999999997663221 122356665 779999776898 88888999988883110 11112334
Q ss_pred CCccHHHHHHHHccCCcHHHHHHHHH-HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--
Q 013210 282 PTMNPKVAFELSERIPHLGLRMKEHC-HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-- 358 (447)
Q Consensus 282 ~~~~~~~a~~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-- 358 (447)
+.+++.++.+++..++. ....++.. ++.+++.+.|+++.. +|.... ..+.|.++.|.+..
T Consensus 328 np~a~aAa~aaL~~~~~-~~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~-------------vr~~G~~~~i~~~~~~ 390 (472)
T 3hmu_A 328 HPVAAAVALENLRILEE-ENILDHVRNVAAPYLKEKWEALTD---HPLVGE-------------AKIVGMMASIALTPNK 390 (472)
T ss_dssp CHHHHHHHHHHHHHHHH-TTHHHHHHHTHHHHHHHHHHGGGG---STTEEE-------------EEEETTEEEEEECSCG
T ss_pred CHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhc---CCCeEE-------------EEecCceEEEEEecCc
Confidence 44444444444332211 22455566 777788888865421 111100 11467799999863
Q ss_pred ----------HHHHHHHHHHhhc
Q 013210 359 ----------EEKANRLMNYLQN 371 (447)
Q Consensus 359 ----------~~~~~~l~~~l~~ 371 (447)
...+..+.+.|..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~ 413 (472)
T 3hmu_A 391 ASRAKFASEPGTIGYICRERCFA 413 (472)
T ss_dssp GGTCCBSSCTTHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHH
Confidence 1224566666664
No 203
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.90 E-value=6e-22 Score=200.49 Aligned_cols=292 Identities=16% Similarity=0.115 Sum_probs=184.8
Q ss_pred ccCCCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCc------
Q 013210 93 YSRHFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPR------ 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~------ 161 (447)
+..+..+...+++++++++.+ .+.++||+||++|+..+++.+.. .+++|++..+.||+...........
T Consensus 98 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 177 (451)
T 3oks_A 98 FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKD 177 (451)
T ss_dssp TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccccc
Confidence 344567778899999999985 36799999999999999987653 4579999999999876544221100
Q ss_pred ---ccCeeEEEeCCC------------------CHHHHHHhhc----cCCceEEEEEcCCCCCccccC----HHHHHHHH
Q 013210 162 ---ACNITTTFVDIS------------------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLA 212 (447)
Q Consensus 162 ---~~g~~~~~v~~~------------------d~~~l~~~i~----~~~t~lV~i~~~~NptG~v~~----l~~I~~la 212 (447)
.....+.+++.. +++.+++.++ .+++++|++++++++.|.+.+ +++|.++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~ 257 (451)
T 3oks_A 178 GFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWC 257 (451)
T ss_dssp TCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred CCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHH
Confidence 011234445443 2444444442 246778888888888888876 99999999
Q ss_pred HhcCCEEEEeCCCCCCCCC-----ccCC--CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCcc
Q 013210 213 HDKGVTVVVDNTFSPLVLS-----PARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN 285 (447)
Q Consensus 213 ~~~gi~livD~~~~~~~~~-----~~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~ 285 (447)
++||+++|+||+|+++... ...+ ..|++ |++|.+++ |.|+ |++++++++++.+..... ..+..++.+.
T Consensus 258 ~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~~i-G~v~~~~~~~~~~~~~~~-~~t~~~~~~~ 332 (451)
T 3oks_A 258 RKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-GLPL-SAVTGRAEIMDSPHVSGL-GGTYGGNPIA 332 (451)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHTCSCTTSB-CCSSSSCHHH
T ss_pred HHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-Ccce-EEEEECHHHHhhhcCCCc-CCCCCCCHHH
Confidence 9999999999999665321 1122 34555 68899996 8999 888889998877654333 2223334444
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe-----
Q 013210 286 PKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM----- 356 (447)
Q Consensus 286 ~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l----- 356 (447)
+.++..++..++. ....++..++.+++.+.|++ ++..... .+.|.++++.+
T Consensus 333 ~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~G~~~~~~~~~~~~ 392 (451)
T 3oks_A 333 CAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQAEDDRIGDV-------------------RGRGAMIAMELVKAGT 392 (451)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-------------------EEETTEEEEEEBSTTS
T ss_pred HHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-------------------EEeeEEEEEEEecCcc
Confidence 4444333332211 12344555555566665544 3321111 14677999998
Q ss_pred --CCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 357 --ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 357 --~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
+.......+.+.|... |+ .+..+ +...+.+||++. ...+++.++.+.+
T Consensus 393 ~~~~~~~~~~~~~~l~~~---Gv-~v~~~-------------------------~~~~~~iRi~~~-~~~t~e~i~~~l~ 442 (451)
T 3oks_A 393 TEPDADLTKALCAGAHAA---GV-IVLSC-------------------------GTYGNVVRFLPP-LSIGDDLLNEGLD 442 (451)
T ss_dssp CCBCHHHHHHHHHHHHHT---TE-ECEEE-------------------------CTTSCEEEECCC-TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC---Cc-EEecC-------------------------CCCCCEEEEECC-CCCCHHHHHHHHH
Confidence 3344566777777652 32 32222 112367999988 7666676766666
Q ss_pred HHHHh
Q 013210 435 ALSRM 439 (447)
Q Consensus 435 al~~~ 439 (447)
+|+++
T Consensus 443 ~l~~~ 447 (451)
T 3oks_A 443 VLEEV 447 (451)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 204
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.90 E-value=2.6e-23 Score=209.41 Aligned_cols=251 Identities=13% Similarity=0.175 Sum_probs=168.8
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHh--cCCCCeEEEeCCCchhHHHHHHhhc---------CcccC
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFF---------PRACN 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~---------~~~~g 164 (447)
..+...++++.+++++ +.+.++||+||++|+.++++.. +..+++||+.++.|++......... +...|
T Consensus 94 ~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g 173 (434)
T 2epj_A 94 PGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAG 173 (434)
T ss_dssp CCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTT
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCC
Confidence 5667789999999999 7888999999999999999862 3446789999999987543220000 11123
Q ss_pred e------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 165 I------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 165 ~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
+ .+..++.+|+++|++++++ +++++|++++++|++|.+.| +++|.++|++||+++|+||+|+++....
T Consensus 174 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~ 253 (434)
T 2epj_A 174 VPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGL 253 (434)
T ss_dssp CCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSST
T ss_pred CCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCc
Confidence 2 3555666799999999843 47889999988889999988 9999999999999999999997663211
Q ss_pred ------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 233 ------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 233 ------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
.....|++ |+||.+++ |.++ |++++++++++.+..... ...+..++.+...++..++..++. ....+
T Consensus 254 ~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-~~~~~ 328 (434)
T 2epj_A 254 EGAQGYFNIEGDII--VLGKIIGG-GFPV-GAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-EPVYS 328 (434)
T ss_dssp THHHHHHTCCCSEE--EEEGGGGT-TSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-SCHHH
T ss_pred chhhHHhCCCCCee--eecchhcC-Ccce-eeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-cCHHH
Confidence 11235654 68899997 8887 999999988776653111 011122222333333333322211 22456
Q ss_pred HHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------------HHHHHHHHH
Q 013210 305 EHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKANRLMN 367 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------------~~~~~~l~~ 367 (447)
+..++++++.+.|++. +.....+ +.|.++++.++. ......+.+
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (434)
T 2epj_A 329 VSREAAKALEEAASEVLDRTGLPYTIN-------------------RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHE 389 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEE-------------------EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEE-------------------EeeeEEEEEEeCCCcccchhccccCHHHHHHHHH
Confidence 6777778888887654 3311111 357799999974 234566777
Q ss_pred Hhhc
Q 013210 368 YLQN 371 (447)
Q Consensus 368 ~l~~ 371 (447)
.|..
T Consensus 390 ~l~~ 393 (434)
T 2epj_A 390 EMLR 393 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 205
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.90 E-value=6.7e-23 Score=205.96 Aligned_cols=204 Identities=11% Similarity=0.113 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHh--------cCCCCeEEEeCCCchhHHHHHHhhcCcccC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQL--------CSSGGHVVAARTLYGGTHALLTHFFPRACN 164 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 164 (447)
..++|+.||++++ .+.+++|+|+++|+.+++.++ +++||+|+++.|.|+++...+.. .|
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~-----~g 176 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY-----FD 176 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH-----SC
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHH-----cC
Confidence 4789999999875 356999999999999999999 89999999999999998887742 34
Q ss_pred eeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccC--CCCeEEEe
Q 013210 165 ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPAR--LGADVVVH 242 (447)
Q Consensus 165 ~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~--~g~di~~~ 242 (447)
.++..+. .|+++|++++ ++++++|++++||||||.+.+ + + ++ ++..+.|+++..-...+.. .+.++++.
T Consensus 177 ~~~~~~~-~d~~~l~~~~-~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~ 247 (427)
T 2hox_A 177 KKGYVWA-GNAANYVNVS-NPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPIKYKADEDILLF 247 (427)
T ss_dssp BTTEEEE-EEGGGGTTCS-CGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCCCSCBCCSEEEE
T ss_pred Ceeeeec-CCHHHHHHhh-cCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCccccCCCceEEEE
Confidence 4433322 2677888888 667999999999999999999 4 2 32 5678899887321111122 46899999
Q ss_pred CCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-----------C-CcHHHHHHHHHHH
Q 013210 243 SISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-----------I-PHLGLRMKEHCHR 309 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-----------~-~~l~~~~~~~~~~ 309 (447)
|+||.+|++|.|+ ||++. ++++++.+...+... ....+.+.+.++..++.. . +.+....+++.++
T Consensus 248 S~SK~~g~~G~Ri-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (427)
T 2hox_A 248 TMSKFTGHSGSRF-GWALIKDESVYNNLLNYMTKN-TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRER 325 (427)
T ss_dssp EHHHHTSCGGGCC-EEEEECCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHH
T ss_pred eChhcCCCCCceE-EEEEECCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHH
Confidence 9999999999999 99988 589998888766521 112233333343333332 1 2344566778889
Q ss_pred HHHHHHHHHhC
Q 013210 310 ALIFARRMKKL 320 (447)
Q Consensus 310 ~~~l~~~L~~~ 320 (447)
++++.+.|++.
T Consensus 326 ~~~l~~~L~~~ 336 (427)
T 2hox_A 326 WVNITALLDQS 336 (427)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHhC
Confidence 99999999887
No 206
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.89 E-value=1.3e-22 Score=203.99 Aligned_cols=218 Identities=17% Similarity=0.176 Sum_probs=154.7
Q ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhh---------cCccc
Q 013210 96 HFNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FPRAC 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~---------~~~~~ 163 (447)
+.++...++++++++++ +.+.++||+||++|+..+++.+.. .+++|++..+.|++........ .+...
T Consensus 90 ~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 169 (429)
T 3k28_A 90 APTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSP 169 (429)
T ss_dssp SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCT
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcC
Confidence 34677789999999998 578899999999999999987653 5679999999998654322000 00001
Q ss_pred C------eeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013210 164 N------ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS 231 (447)
Q Consensus 164 g------~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~ 231 (447)
+ ..+..++.+|+++|+++++. +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|.++ ..
T Consensus 170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~ 248 (429)
T 3k28_A 170 GVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RV 248 (429)
T ss_dssp TCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TS
T ss_pred CCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-cc
Confidence 1 14555666799999998842 56889999999999999988 999999999999999999999765 22
Q ss_pred c-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHH
Q 013210 232 P-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLR 302 (447)
Q Consensus 232 ~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~ 302 (447)
. .....|++ |+||.+++ |.++ |++++++++++.+..... ...+..++.+++.++..++...+ .+.
T Consensus 249 g~~~~~~~~~~~~di~--t~sK~~~~-G~~i-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~--~~~ 322 (429)
T 3k28_A 249 AYNCGQGYYGVTPDLT--CLGKVIGG-GLPV-GAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT--PES 322 (429)
T ss_dssp STTHHHHHHTCCCSEE--EECGGGGT-TSCC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--HHH
T ss_pred CcchHHHHhCCCCcee--hhhhhhcC-CCCe-EEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--HHH
Confidence 1 11234554 58899985 8898 899999998877654221 11123333344444444554444 556
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 013210 303 MKEHCHRALIFARRMKKL 320 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~ 320 (447)
.+++.++++++.+.|++.
T Consensus 323 ~~~~~~~~~~l~~~L~~~ 340 (429)
T 3k28_A 323 YVEFERKAEMLEAGLRKA 340 (429)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677888888888888764
No 207
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.89 E-value=9.8e-23 Score=205.85 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=122.1
Q ss_pred CCCchHHHHHHHHHHHhCCCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC--
Q 013210 96 HFNPTVLNLSRQMAALEGTEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-- 172 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-- 172 (447)
.......++++.+|+ +|++. +++|+|+++|+.+++++++++||+|+++.++|+++...+.. .|.++.+++.
T Consensus 54 ~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~-----~G~~~~~v~~~~ 127 (446)
T 2x3l_A 54 HPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDI-----SQQEGHFIETHQ 127 (446)
T ss_dssp SCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHH-----HTCCEEECEEEE
T ss_pred CcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHH-----cCCeEEEEeCee
Confidence 345677899999999 99864 78899999999999999999999999999999999887732 4666666554
Q ss_pred C---------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-C-----CCCccCCCC
Q 013210 173 S---------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-L-----VLSPARLGA 237 (447)
Q Consensus 173 ~---------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~-----~~~~~~~g~ 237 (447)
+ |+++| + .+++++|++++ .|++|.+.|+++|.++|++||+++|+|++|+. + ..+...+++
T Consensus 128 ~~~~~~~~~~d~~~l---~-~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~ 202 (446)
T 2x3l_A 128 SPLTNHYNKVNLSRL---N-NDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQA 202 (446)
T ss_dssp CTTTSSEEEEEC-----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTC
T ss_pred ccccCcCCCCCHHHH---c-CCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCC
Confidence 2 45555 4 66899999999 55699999999999999999999999999953 3 223345588
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANLVN 267 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~~~ 267 (447)
|+++.|+||+++++.. + |+++.++++++
T Consensus 203 Di~~~S~~K~l~~~~g-~-g~l~~~~~~i~ 230 (446)
T 2x3l_A 203 DYVVQSFHKTLPALTM-G-SVLYIHKNAPY 230 (446)
T ss_dssp SEEEECHHHHSSSCTT-C-EEEEEETTCTT
T ss_pred CEEEECCccccccccc-c-EEEEEcCCcCC
Confidence 9999999996554322 4 88887766544
No 208
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.89 E-value=7.6e-22 Score=199.78 Aligned_cols=294 Identities=11% Similarity=0.102 Sum_probs=187.5
Q ss_pred CCCCchHHHHHHHHHHHhCCC-eEEEeCChHHHHHHHHHHhc-----C---CCCeEEEeCCCchhHHHHHHhhcCc----
Q 013210 95 RHFNPTVLNLSRQMAALEGTE-AAYCTASGMSAISSVLMQLC-----S---SGGHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~~-~~~~tsggt~A~~~al~~l~-----~---~gd~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
.+..+...+++++++++.+.+ .++||+||++|+..+++.+. . ++++|++..+.|+++..........
T Consensus 87 ~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 166 (452)
T 3n5m_A 87 SQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRR 166 (452)
T ss_dssp TSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGT
T ss_pred ccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhc
Confidence 345677789999999998752 39999999999999998876 4 6789999999998865433211000
Q ss_pred ----ccCeeEEEeCC--------CC---------HHHHHHhhc---cCCceEEEEEcC-CCCCccccC----HHHHHHHH
Q 013210 162 ----ACNITTTFVDI--------SD---------HEMVNSAIV---QGRTKVLYFESI-SNPTLAVAN----IPELSRLA 212 (447)
Q Consensus 162 ----~~g~~~~~v~~--------~d---------~~~l~~~i~---~~~t~lV~i~~~-~NptG~v~~----l~~I~~la 212 (447)
.....+.+++. +| +++|+++++ .+++++|+++++ +| +|.+.+ +++|.++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~ 245 (452)
T 3n5m_A 167 YQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC 245 (452)
T ss_dssp TTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred cccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence 01112344432 23 899999984 267889999999 89 998886 99999999
Q ss_pred HhcCCEEEEeCCCCCCCCC-----ccCCC--CeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHH---Hhh--hhhhh
Q 013210 213 HDKGVTVVVDNTFSPLVLS-----PARLG--ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD---LHQ--GALML 279 (447)
Q Consensus 213 ~~~gi~livD~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~---~~~--~~~~~ 279 (447)
++||+++|+||+|+++... ....+ .|++ +++|.+++ | .++ |++++++++++.+.. .+. ...+.
T Consensus 246 ~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~i-g~~~~~~~i~~~~~~~~~~~~~~~~~t~ 321 (452)
T 3n5m_A 246 QKHGALLISDEVICGFGRTGKAFGFMNYDVKPDII--TMAKGITS-AYLPL-SATAVKREIYEAFKGKGEYEFFRHINTF 321 (452)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSSCC-EEEEEEHHHHGGGCSSSTTCSCCCCCSS
T ss_pred HHcCCEEEEecchhCCCcccccchhhhcCCCCCEE--eecccccC-CCcce-EEEEECHHHHHHHhhccCCCCccccCCC
Confidence 9999999999999655321 11223 4555 58899997 8 898 889999998877743 111 11122
Q ss_pred cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 280 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 280 ~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
.++.+++.++..++..++. ....++..++.+++.+.|++. +.....+ +.|.++++.
T Consensus 322 ~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~ 381 (452)
T 3n5m_A 322 GGNPAACALALKNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIR-------------------GKGLLVGIE 381 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-------------------ESSSCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-------------------EEEEEEEEE
Confidence 3333333333333332211 123455666666666666543 2211111 356688888
Q ss_pred eCC---------HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013210 356 MET---------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 426 (447)
Q Consensus 356 l~~---------~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~ 426 (447)
+.. .+....+.+.|... | +.+..++.. . +..++.|||+++ ...++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~---G-v~~~~~~~~------~---------------~~~~~~iRi~~~-~~~t~ 435 (452)
T 3n5m_A 382 LVNDKETKEPIDNDKIASVVNACKEK---G-LIIGRNGMT------T---------------AGYNNILTLAPP-LVISS 435 (452)
T ss_dssp EEEETTTTEECCHHHHHHHHHHHHHT---T-EECEECTTS------S---------------TTCCCEEEECCC-TTCCH
T ss_pred EecCCcccCCCCHHHHHHHHHHHHHC---C-cEEeecCcc------c---------------CCCCCEEEEECC-CCCCH
Confidence 731 22344566666642 3 233322110 0 012578999988 77777
Q ss_pred HHHHHHHHHHHHh
Q 013210 427 QRWSQFEKALSRM 439 (447)
Q Consensus 427 ~~i~~l~~al~~~ 439 (447)
+.++.+.++|+++
T Consensus 436 e~i~~~l~~l~~~ 448 (452)
T 3n5m_A 436 EEIAFVIGTLKTA 448 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777655
No 209
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.89 E-value=5.5e-22 Score=203.70 Aligned_cols=294 Identities=11% Similarity=0.095 Sum_probs=194.7
Q ss_pred CCchHHHHHH----HHHHHhCCC----eEEEeCChHHHHHHHHHHhcC--------------CCCeEEEeCCCchhHHHH
Q 013210 97 FNPTVLNLSR----QMAALEGTE----AAYCTASGMSAISSVLMQLCS--------------SGGHVVAARTLYGGTHAL 154 (447)
Q Consensus 97 ~~~~~~~l~~----~ia~l~g~~----~~~~tsggt~A~~~al~~l~~--------------~gd~Vi~~~~~y~~~~~~ 154 (447)
..+...++|+ .+++++|.+ .++||+|||+|+..++.++.. +++.|+++...|.++...
T Consensus 129 ~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~ 208 (511)
T 3vp6_A 129 IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKA 208 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHH
Confidence 4555555555 456667765 589999999999999887654 466899999999999887
Q ss_pred HHhhcCcccCe---eEEEeCCC-----CHHHHHHhhccCC------ceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEE
Q 013210 155 LTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQGR------TKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 220 (447)
Q Consensus 155 ~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~i~~~~------t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~li 220 (447)
+. . .|. +++.++.+ |+++|+++| +++ +++|++++++|++|.+.|+++|+++|++||+++|
T Consensus 209 ~~-~----~g~g~~~~~~v~~d~~~~~d~~~Le~~i-~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lh 282 (511)
T 3vp6_A 209 GA-A----LGFGTDNVILIKCNERGKIIPADFEAKI-LEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 282 (511)
T ss_dssp HH-H----TTSCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEE
T ss_pred HH-H----cCCCCCcEEEeecCCCCccCHHHHHHHH-HHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEE
Confidence 73 2 344 77777765 899999999 433 8899999999999999999999999999999999
Q ss_pred EeCCCCC-CCCCc----c--C-CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh--------------
Q 013210 221 VDNTFSP-LVLSP----A--R-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM-------------- 278 (447)
Q Consensus 221 vD~~~~~-~~~~~----~--~-~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~-------------- 278 (447)
+|++|+. ....+ . . .++|+++.++||+++.+.. .|++++.+++++.........+..
T Consensus 283 vD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 361 (511)
T 3vp6_A 283 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ-CSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGD 361 (511)
T ss_dssp EEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC-CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGG
T ss_pred EEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC-eEEEEEeCHHHHHHHhccCCccccCcccccccccCccC
Confidence 9999943 22221 1 1 2579999999999987643 434445566555544221111100
Q ss_pred ---hcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 279 ---LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 279 ---~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
..+........+..++ +.+.+.+++++..++++++.+.|++.+ +++..+..+ ..+++
T Consensus 362 ~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p-----------------~~~~v 424 (511)
T 3vp6_A 362 KAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP-----------------EHTNV 424 (511)
T ss_dssp GSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCC-----------------SSSCE
T ss_pred CCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-----------------CeEEE
Confidence 0111122333343333 335577788899999999999999874 466542111 23367
Q ss_pred EEEeCCH---------H-------HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEE
Q 013210 353 CLDMETE---------E-------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 416 (447)
Q Consensus 353 ~~~l~~~---------~-------~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iR 416 (447)
+|.+... . ....+.+.|... |.+.++.. +. +-..+++|
T Consensus 425 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---G~~~~~~~--------~~---------------~~~~~~lR 478 (511)
T 3vp6_A 425 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES---GTTMVGYQ--------PQ---------------GDKANFFR 478 (511)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH---TSCEEEEE--------EE---------------TTEEEEEE
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc---CCEEEEEE--------Ee---------------CCceEEEE
Confidence 7765311 1 123455666542 32222211 00 01124799
Q ss_pred EEe-CCCCCHHHHHHHHHHHHHHhhh
Q 013210 417 MSV-GYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 417 iS~-g~~~~~~~~i~~l~~al~~~~~ 441 (447)
|++ + ..++++.|+.+.++|+++.+
T Consensus 479 i~~~~-~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 479 MVISN-PAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp ECCCC-TTCCHHHHHHHHHHHHHHHC
T ss_pred EEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 999 5 78888889999888887754
No 210
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.89 E-value=3e-22 Score=202.61 Aligned_cols=219 Identities=13% Similarity=0.120 Sum_probs=137.5
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC----CC----CeEEEeCCCchhHHHHHHhhcCc---
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS----SG----GHVVAARTLYGGTHALLTHFFPR--- 161 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~----~g----d~Vi~~~~~y~~~~~~~~~~~~~--- 161 (447)
.+..+...+++++++++.+ .+.++||+||++|+..+++.+.. +| ++|++..+.|++...........
T Consensus 83 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 162 (448)
T 3dod_A 83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELF 162 (448)
T ss_dssp SSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccc
Confidence 3456777899999999984 46799999999999999988764 44 89999999998865333111000
Q ss_pred -----ccCeeEEEeCCC----------------CHHHHHHhhc--cCCceEEEEEcCC-CCCccccC----HHHHHHHHH
Q 013210 162 -----ACNITTTFVDIS----------------DHEMVNSAIV--QGRTKVLYFESIS-NPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 162 -----~~g~~~~~v~~~----------------d~~~l~~~i~--~~~t~lV~i~~~~-NptG~v~~----l~~I~~la~ 213 (447)
.....+..++.. |+++|+++++ .+++++|++++++ |++|.+.+ +++|.++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 242 (448)
T 3dod_A 163 HHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCT 242 (448)
T ss_dssp ----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHH
T ss_pred cccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHH
Confidence 001123334433 2788999884 2568899999998 99998876 999999999
Q ss_pred hcCCEEEEeCCCCCCCCC-----ccCCC--CeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHH-------Hhhhhhh
Q 013210 214 DKGVTVVVDNTFSPLVLS-----PARLG--ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD-------LHQGALM 278 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~-------~~~~~~~ 278 (447)
+||+++|+||+|+++... ....+ .|++ +++|.+++ | .++ |++++++++++.+.. ... ..+
T Consensus 243 ~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t~sK~l~~-G~~~i-g~v~~~~~~~~~~~~~~~~~~~~~~-~~t 317 (448)
T 3dod_A 243 TYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM--AAGKGITG-GYLPI-AVTFATEDIYKAFYDDYENLKTFFH-GHS 317 (448)
T ss_dssp HTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCC-EEEEEEHHHHHTTCSCGGGCCCCCC-CCT
T ss_pred HhCCEEEEeccccCCCcccchhhhhhcCCCCCEE--EecccccC-CcCce-EEEEECHHHHHHhhhccccCCcccc-cCC
Confidence 999999999999655321 11223 4555 57899986 7 598 899999998887754 211 112
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
..++.+.+.++..++..++. ....++..++.+++.+.|++
T Consensus 318 ~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~ 357 (448)
T 3dod_A 318 YTGNQLGCAVALENLALFES-ENIVEQVAEKSKKLHFLLQD 357 (448)
T ss_dssp TTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH
Confidence 23333333333333332211 12344555666666666654
No 211
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.89 E-value=1.5e-22 Score=204.81 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=184.4
Q ss_pred CCCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc---C-----------CCCeEEEeCCCchhHHHHHHh
Q 013210 95 RHFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC---S-----------SGGHVVAARTLYGGTHALLTH 157 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~---~-----------~gd~Vi~~~~~y~~~~~~~~~ 157 (447)
++..+...++++.++++++ .+.++||+||++|++.+++.+. . +|++||+..+.||+.......
T Consensus 97 ~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~ 176 (449)
T 2cjg_A 97 DVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLS 176 (449)
T ss_dssp TCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGG
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhh
Confidence 3456667899999999984 4679999999999999997543 2 288999999999875432211
Q ss_pred h----------cCcccCeeEEEeCCCC--H-------------HHHHHhhc--cCCceEEEEEcCCCCCccccC----HH
Q 013210 158 F----------FPRACNITTTFVDISD--H-------------EMVNSAIV--QGRTKVLYFESISNPTLAVAN----IP 206 (447)
Q Consensus 158 ~----------~~~~~g~~~~~v~~~d--~-------------~~l~~~i~--~~~t~lV~i~~~~NptG~v~~----l~ 206 (447)
. ... ....+.+++.+| . ++|+++++ .+++++|++++++||+|.+.+ ++
T Consensus 177 ~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 177 LTNTKPTITARFPK-FDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp TCCSCHHHHTTSCC-CCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred hcCCchhhcccCCC-CCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence 0 000 122566666555 2 33888773 267899999998999998776 99
Q ss_pred HHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH-----Hhh
Q 013210 207 ELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-----LHQ 274 (447)
Q Consensus 207 ~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-----~~~ 274 (447)
+|.++|++||+++|+||+|+++.... .....|++ |++|.+ ++ |++++++++++.+.. ...
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l-----~i-G~~~~~~~~~~~l~~~~~~~~~~ 327 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT-----QV-CGVMAGRRVDEVADNVFAVPSRL 327 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG-----SS-EEEEECGGGGGSTTCTTTSTTSS
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc-----cE-EEEEECHHHhhhhhhcccCCccc
Confidence 99999999999999999997653221 12245665 578998 36 888888888765321 111
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHHHHHHhccCCCcCcEEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..+..++.+.+.++..++..+.. ....++..++++++.+.|++.... +|. +... .+.|.+++
T Consensus 328 -~~t~~~n~~~~~aa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~--~~~~~~~~-------------~~~g~~~~ 390 (449)
T 2cjg_A 328 -NSTWGGNLTDMVRARRILEVIEA-EGLFERAVQHGKYLRARLDELAAD--FPAVVLDP-------------RGRGLMCA 390 (449)
T ss_dssp -CCSSSSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH--STTTSEEE-------------EEETTEEE
T ss_pred -ccCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhh--CCCceeeE-------------eeccEEEE
Confidence 11122333333333333332211 234566778888888888753100 111 0000 03577999
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
+.+++......+.+.|... | +.+..+ | .+.||||++ ...+++.++.+.
T Consensus 391 ~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------g--~~~iRi~~~-~~~t~e~i~~~l 438 (449)
T 2cjg_A 391 FSLPTTADRDELIRQLWQR---A-VIVLPA-------------------------G--ADTVRFRPP-LTVSTAEIDAAI 438 (449)
T ss_dssp EECSSHHHHHHHHHHHHHT---T-EECEEE-------------------------T--TTEEEECCC-TTCCHHHHHHHH
T ss_pred EEECChHHHHHHHHHHHHC---C-eEEecC-------------------------C--CCEEEEECC-CCCCHHHHHHHH
Confidence 9998654456777777642 3 233222 1 378999988 767777777777
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|+++
T Consensus 439 ~~l~~~ 444 (449)
T 2cjg_A 439 AAVRSA 444 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 212
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.89 E-value=1.5e-22 Score=203.62 Aligned_cols=251 Identities=16% Similarity=0.208 Sum_probs=163.1
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHh---------hcCcc--
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTH---------FFPRA-- 162 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~---------~~~~~-- 162 (447)
.++...++++++++++ +.+.++||+||++|++.+++... ..+++|++..+.|++....... ..+..
T Consensus 91 ~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 170 (429)
T 4e77_A 91 PTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPG 170 (429)
T ss_dssp CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTT
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCC
Confidence 5677789999999998 56789999999999999998543 3567899999999887642100 00000
Q ss_pred ----cCeeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013210 163 ----CNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 163 ----~g~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~- 231 (447)
....+..++.+|+++|+++++. +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+++...
T Consensus 171 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~ 250 (429)
T 4e77_A 171 VPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL 250 (429)
T ss_dssp SCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT
T ss_pred CCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc
Confidence 1224556677799999999843 46788888888888888887 999999999999999999999765111
Q ss_pred ---ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 232 ---PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 232 ---~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
...++ .|++ |++|.++ +|.++ |++++++++++.+..... ...+..++.+...++..++..++. ....+
T Consensus 251 ~~~~~~~~~~pdi~--t~sK~~~-~G~~~-G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~ 325 (429)
T 4e77_A 251 AGAQDYYHVIPDLT--CLGKIIG-GGMPV-GAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYE 325 (429)
T ss_dssp TCHHHHTTCCCSEE--EEEGGGG-TTSCC-EEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHH
T ss_pred chHHHhcCCCCCee--eeccccc-CCCCe-EEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHH
Confidence 11123 4654 6889999 58888 899999998877654211 111122333333333333332211 23445
Q ss_pred HHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------------HHHHHHH
Q 013210 305 EHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------------EKANRLM 366 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------------~~~~~l~ 366 (447)
+..++.+++.+.|++ ++.....+ +.|.++++.+... .....+.
T Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (429)
T 4e77_A 326 TLTELTDSLATGLRHAAKEENIPLVVN-------------------HVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFF 386 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEE-------------------EETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEE-------------------EeeeEEEEEEccCcccccccccccccHHHHHHHH
Confidence 556666666666654 33311111 4677999998742 2346677
Q ss_pred HHhhc
Q 013210 367 NYLQN 371 (447)
Q Consensus 367 ~~l~~ 371 (447)
+.|..
T Consensus 387 ~~l~~ 391 (429)
T 4e77_A 387 HLMLE 391 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 213
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.89 E-value=9.3e-22 Score=201.02 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=163.7
Q ss_pred HHHHHHHHHhCCC-----------eEEEeCChHHHHHHHHHHhcCC---------CC--------e--EEEeCCCchhHH
Q 013210 103 NLSRQMAALEGTE-----------AAYCTASGMSAISSVLMQLCSS---------GG--------H--VVAARTLYGGTH 152 (447)
Q Consensus 103 ~l~~~ia~l~g~~-----------~~~~tsggt~A~~~al~~l~~~---------gd--------~--Vi~~~~~y~~~~ 152 (447)
++.+.+++++|.+ .+++|+|||+|+..++.++..+ || + |+++.+.|+++.
T Consensus 117 ~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~ 196 (486)
T 1js3_A 117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE 196 (486)
T ss_dssp HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH
T ss_pred HHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH
Confidence 3445567777875 3799999999999998775321 42 3 788999999988
Q ss_pred HHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCc------eEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEE
Q 013210 153 ALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRT------KVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 153 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t------~lV~i~~~~NptG~v~~l~~I~~la~~~gi~liv 221 (447)
..+. ..|++++.++.+ |+++|++++ ++++ .+|++++++|++|.+.|+++|+++|++||+++|+
T Consensus 197 ~~~~-----~~G~~v~~v~~d~~~~~d~~~L~~~i-~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhv 270 (486)
T 1js3_A 197 RAGL-----IGGVKLKAIPSDGKFAMRASALQEAL-ERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHV 270 (486)
T ss_dssp HHHH-----HHTCEEEEECCCTTSCCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred HHHH-----hCCCceEEeecCCCCCCCHHHHHHHH-HHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEE
Confidence 7763 258888888874 899999999 5445 3889999999999999999999999999999999
Q ss_pred eCCCCCCCC-C--cc----C-CCCeEEEeCCCccccCCCCeeEEEEEcC-hHH-HHHHH---HHh-hhhh----------
Q 013210 222 DNTFSPLVL-S--PA----R-LGADVVVHSISKFISGGADIIAGAVCGP-ANL-VNSMM---DLH-QGAL---------- 277 (447)
Q Consensus 222 D~~~~~~~~-~--~~----~-~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~-~~~l~---~~~-~~~~---------- 277 (447)
|++|+...+ . .. . .++|+++.|+||+++++ ..+ |+++.+ +.. .+.+. .+. ....
T Consensus 271 D~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~-G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~ 348 (486)
T 1js3_A 271 DAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDC-SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRH 348 (486)
T ss_dssp ECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSC-EEEEESCHHHHHGGGC------------CCSCCCGGG
T ss_pred ehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cce-EEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccc
Confidence 999954321 1 11 1 26899999999999976 345 777654 443 23221 000 0000
Q ss_pred --hhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 278 --MLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 278 --~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
...+........+.++. +.+.+.+.+++..++++++.+.|++.+ +++..+. .++++
T Consensus 349 ~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-------------------~~~~v 409 (486)
T 1js3_A 349 WQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-------------------TLGLV 409 (486)
T ss_dssp SSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-------------------CSSEE
T ss_pred cCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-------------------ceeEE
Confidence 00111122233333222 334566778888999999999999874 4554331 23488
Q ss_pred EEEeCC-HHHHHHHHHHhhc
Q 013210 353 CLDMET-EEKANRLMNYLQN 371 (447)
Q Consensus 353 ~~~l~~-~~~~~~l~~~l~~ 371 (447)
+|.+++ ......+.+.|..
T Consensus 410 ~f~~~~~~~~~~~l~~~L~~ 429 (486)
T 1js3_A 410 CFRLKGSDGLNEALLERINS 429 (486)
T ss_dssp EEEESSCHHHHHHHHHHHHH
T ss_pred EEEecChHHHHHHHHHHHHh
Confidence 898864 2224667777764
No 214
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.89 E-value=1.6e-21 Score=200.65 Aligned_cols=223 Identities=14% Similarity=0.078 Sum_probs=154.1
Q ss_pred hHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc-------C-CCC------eEEEeCCCchhHHHHHHhhcCccc
Q 013210 100 TVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC-------S-SGG------HVVAARTLYGGTHALLTHFFPRAC 163 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~-------~-~gd------~Vi~~~~~y~~~~~~~~~~~~~~~ 163 (447)
..+++++.+++++|.+ .++||+|||+|+.+++.++. + +|+ .|+++...|+++...+. ... .
T Consensus 149 le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~-~~g--~ 225 (515)
T 2jis_A 149 MEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAA-FLG--L 225 (515)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTT--S
T ss_pred HHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHH-HcC--C
Confidence 3456778899999975 69999999999999988763 2 465 89999999999887773 221 2
Q ss_pred Ce-eEEEeCCC-----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--
Q 013210 164 NI-TTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-- 230 (447)
Q Consensus 164 g~-~~~~v~~~-----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-- 230 (447)
|. +++.++.+ |+++|++++... ++++|++++++|++|.+.|+++|+++|+++|+++|+|++|+....
T Consensus 226 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~ 305 (515)
T 2jis_A 226 GTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLS 305 (515)
T ss_dssp CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred CCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhC
Confidence 33 77778764 899999998321 489999999999999999999999999999999999999944322
Q ss_pred C-----ccCC-CCeEEEeCCCccccCCCCeeEEEEEcChH--HHHHHH----HHhhhhhh------h-------cCCCcc
Q 013210 231 S-----PARL-GADVVVHSISKFISGGADIIAGAVCGPAN--LVNSMM----DLHQGALM------L-------LGPTMN 285 (447)
Q Consensus 231 ~-----~~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~--~~~~l~----~~~~~~~~------~-------~g~~~~ 285 (447)
+ ...+ ++|+++.|+||+++++.. + |+++.+++ +++... .+..+... . .+-...
T Consensus 306 ~~~~~~~~g~~~aD~v~~s~hK~l~~p~g-~-G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~ 383 (515)
T 2jis_A 306 QTHRHLLDGIQRADSVAWNPHKLLAAGLQ-C-SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVD 383 (515)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTCCCSC-C-EEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCC
T ss_pred hhhHhhcCCCccCCEEEECcccccCCCCC-e-eEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCccc
Confidence 1 1123 689999999999986543 5 77766544 655421 11100000 0 000111
Q ss_pred HHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCC
Q 013210 286 PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYP 327 (447)
Q Consensus 286 ~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p 327 (447)
....++.++ +...+.+..++..++++++.+.|++.+ +++..+
T Consensus 384 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~ 428 (515)
T 2jis_A 384 CLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVME 428 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 222222222 223455677788899999999999874 455543
No 215
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.89 E-value=2.5e-22 Score=203.45 Aligned_cols=236 Identities=14% Similarity=0.117 Sum_probs=149.9
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHH---hcCCCCeEEEeCCCchhHHHHHHhhc------CcccCe-
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQ---LCSSGGHVVAARTLYGGTHALLTHFF------PRACNI- 165 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~------~~~~g~- 165 (447)
..+...++.+.+++.. +.+.++||+||++|+.++++. +.. +++||+.++.|+++........ +...|+
T Consensus 95 ~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~ 173 (453)
T 2cy8_A 95 SHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVL 173 (453)
T ss_dssp SCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC--------------------------
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCC
Confidence 4556667777777776 677899999999999999987 444 5689999999987654331100 110133
Q ss_pred -----eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc--
Q 013210 166 -----TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-- 232 (447)
Q Consensus 166 -----~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-- 232 (447)
.+..++.+|+++|++++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++....
T Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~ 253 (453)
T 2cy8_A 174 PETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHG 253 (453)
T ss_dssp --CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTH
T ss_pred ccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchh
Confidence 3555666799999998842 47889988888888999887 9999999999999999999997662211
Q ss_pred ----cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH---Hh-hhhhhhcCCCccHHHHHHHHcc-CCcHHHHH
Q 013210 233 ----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD---LH-QGALMLLGPTMNPKVAFELSER-IPHLGLRM 303 (447)
Q Consensus 233 ----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~---~~-~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~ 303 (447)
.....|++ |++|.+++ |.++ |++++++++++.+.. .. ....+..++.+.+.++..++.. + .....
T Consensus 254 ~~~~~~~~~di~--s~sK~l~~-G~~~-G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~--~~~~~ 327 (453)
T 2cy8_A 254 MQALLDVQPDLT--CLAKASAG-GLPG-GILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL--EDDVC 327 (453)
T ss_dssp HHHHHTCCCSEE--EEEGGGGT-TSSC-EEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH--HTTHH
T ss_pred hhHHhCCCCcEE--EEChhhhC-Ccce-EEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh--hhhHH
Confidence 12235655 68899996 7887 999999988776643 10 0011122333333333333332 2 12345
Q ss_pred HHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 304 KEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
+++.++++++.+.|++. +.....+ +.|.++++.++.
T Consensus 328 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~ 367 (453)
T 2cy8_A 328 AKINDLGQFAREAMNHLFARKGLNWLAY-------------------GRFSGFHLMPGL 367 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEE-------------------CCTTEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcEEEE-------------------EeeeEEEEEEec
Confidence 66777778888877653 3311111 357799999974
No 216
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.89 E-value=8.7e-22 Score=200.03 Aligned_cols=317 Identities=14% Similarity=0.064 Sum_probs=185.9
Q ss_pred CCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCC-----C----Ce
Q 013210 71 MEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSS-----G----GH 140 (447)
Q Consensus 71 ~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~-----g----d~ 140 (447)
+.+ +.+.+.+.. +...|+ ..+...++++++|++++.+.++||+||++|+++++++++.+ | |+
T Consensus 53 ~~v~~a~~~~l~~------~~~~y~--~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~ 124 (467)
T 2oqx_A 53 GAVTQSMQAAMMR------GDEAYS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKM 124 (467)
T ss_dssp SCCCHHHHHHTTS------CCCCSS--SCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTC
T ss_pred HHHHHHHHHHhcc------Ccceec--cCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccce
Confidence 555 666666532 112343 24566889999999999999999999999999999998877 8 99
Q ss_pred EEEeCCCchhH-HHHHHhhcCcccCeeEEE------eC------C---CCHHHHHHhhcc---CCceEEEEEcCCCCC-c
Q 013210 141 VVAARTLYGGT-HALLTHFFPRACNITTTF------VD------I---SDHEMVNSAIVQ---GRTKVLYFESISNPT-L 200 (447)
Q Consensus 141 Vi~~~~~y~~~-~~~~~~~~~~~~g~~~~~------v~------~---~d~~~l~~~i~~---~~t~lV~i~~~~Npt-G 200 (447)
|+++ ..|..+ .... .. .|..+.. ++ . .|+++|++++.+ ++|++|++++|+||+ |
T Consensus 125 Ii~~-~~h~~t~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG 198 (467)
T 2oqx_A 125 VAFS-NYFFDTTQGHS-QI----NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGG 198 (467)
T ss_dssp EEEE-SSCCHHHHHHH-HH----TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGC
T ss_pred EEec-ccccccchhhh-hc----cCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCC
Confidence 8887 444332 2222 11 1222211 11 1 289999999942 479999999999998 7
Q ss_pred cccC---HHHHHHHHHhcCCEEEEeCCCCC-------------CCCCccC------CCCeEEEeCCCccccCCCCeeEEE
Q 013210 201 AVAN---IPELSRLAHDKGVTVVVDNTFSP-------------LVLSPAR------LGADVVVHSISKFISGGADIIAGA 258 (447)
Q Consensus 201 ~v~~---l~~I~~la~~~gi~livD~~~~~-------------~~~~~~~------~g~di~~~S~sK~~g~~g~~igG~ 258 (447)
.+.+ +++|+++|++||+++|+|+++.. ...++.. ...|+++.|+||++|++ +||+
T Consensus 199 ~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~ 275 (467)
T 2oqx_A 199 QPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGL 275 (467)
T ss_dssp BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEE
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceE
Confidence 7764 78999999999999999977621 1112211 23678899999999865 4588
Q ss_pred EEcChH-HHHHHHHHhhh----hhhhcCCCccHHHHHHHHccCC-cH-HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCC
Q 013210 259 VCGPAN-LVNSMMDLHQG----ALMLLGPTMNPKVAFELSERIP-HL-GLRMKEHCHRALIFARRMKKLGLKVLYPGLED 331 (447)
Q Consensus 259 l~~~~~-~~~~l~~~~~~----~~~~~g~~~~~~~a~~~~~~~~-~l-~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~ 331 (447)
++++++ +++.+...+.. ......+.........+...++ .+ ...+++..++++++.+.|++.+..+. |.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~--- 351 (467)
T 2oqx_A 276 LCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QA--- 351 (467)
T ss_dssp EEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EE---
T ss_pred EEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cC---
Confidence 887766 44444332221 0001111222221111111111 11 12445567788899999988765554 42
Q ss_pred CchhHHHHHHhccCCCcCcEEEEEeC----C--HHH--HHHHHHHh-hcccccccccccccCccccccccccccCCCCCH
Q 013210 332 HPHHELLKSMANKEYGFGGLLCLDME----T--EEK--ANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 402 (447)
Q Consensus 332 ~p~~~l~~~~~~~~~g~g~~~~~~l~----~--~~~--~~~l~~~l-~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~ 402 (447)
.|.++++.+. + ... ...+.+.| ... | +.++.|+.+..-..+. ....
T Consensus 352 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g-v~~~~~~~~~~~~~~~--~g~~--- 406 (467)
T 2oqx_A 352 ----------------GGHAAFVDAGKLLPHIPADQFPAQALACELYKVA---G-IRAVEIGSFLLGRDPK--TGKQ--- 406 (467)
T ss_dssp ----------------CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHH---C-EECEEESHHHHCBCTT--TCSB---
T ss_pred ----------------CceEEEEechhhcccCCcccccHHHHHHHHHHhc---C-ceeccccccccccccc--cccc---
Confidence 2447777763 1 111 34556666 542 3 4555432211000000 0000
Q ss_pred HHHHhcCCCCCeEEEEeCCCC-CHHHHHHHHHHHHHHh
Q 013210 403 EEKALAGISAGLVRMSVGYLG-TLDQRWSQFEKALSRM 439 (447)
Q Consensus 403 ~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~l~~al~~~ 439 (447)
.....+.||||++ .. .+++.++.+.++|+++
T Consensus 407 -----~~~~~~~iRl~~~-~~~~t~e~i~~~~~~l~~~ 438 (467)
T 2oqx_A 407 -----LPCPAELLRLTIP-RATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp -----CCCSCCEEEECCC-TTTSCHHHHHHHHHHHHHH
T ss_pred -----ccCccCeEEEEec-CCCCCHHHHHHHHHHHHHH
Confidence 0012378999999 77 6666666665555543
No 217
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.89 E-value=8.8e-23 Score=205.09 Aligned_cols=218 Identities=14% Similarity=0.148 Sum_probs=147.6
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHh---------hcCcccC
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTH---------FFPRACN 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~---------~~~~~~g 164 (447)
..+...++++.+++++ +.+.++||+||++|+..+++... ..+++||+..+.|++....... ..+...|
T Consensus 90 ~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 169 (427)
T 3fq8_A 90 PCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPG 169 (427)
T ss_dssp CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCC
Confidence 5677789999999998 46789999999999999995432 3357899999999875432200 0011112
Q ss_pred e------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013210 165 I------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 165 ~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~- 231 (447)
+ .+..++.+|+++|++++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++...
T Consensus 170 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~ 249 (427)
T 3fq8_A 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY 249 (427)
T ss_dssp SCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT
T ss_pred CCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCc
Confidence 1 2556666799999999843 27899999999999999998 999999999999999999999766111
Q ss_pred -----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 232 -----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 232 -----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
......|+ .|+||.++ +|.|+ |++++++++++.+...+. ...+..++.+...++..++..++. ....+
T Consensus 250 ~~~~~~~~~~~di--~t~sK~~~-~G~~~-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~ 324 (427)
T 3fq8_A 250 GGVQEKFGVTPDL--TTLGKIIG-GGLPV-GAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYE 324 (427)
T ss_dssp THHHHHTTCCCSE--EEECGGGG-TTSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHH
T ss_pred chhhHhcCCCCCh--hhhhhhhh-CCcce-EEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHH
Confidence 11223455 46779999 58898 899999998877754221 111122233333333333332222 23445
Q ss_pred HHHHHHHHHHHHHHh
Q 013210 305 EHCHRALIFARRMKK 319 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~ 319 (447)
++.++.+++.+.|++
T Consensus 325 ~~~~~~~~~~~~l~~ 339 (427)
T 3fq8_A 325 YLDQITKRLSDGLLA 339 (427)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666654
No 218
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.89 E-value=1.2e-21 Score=201.10 Aligned_cols=292 Identities=11% Similarity=0.087 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcC--------CC-----C-eEEEeCCCchhHHHHHHhhcCccc
Q 013210 102 LNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCS--------SG-----G-HVVAARTLYGGTHALLTHFFPRAC 163 (447)
Q Consensus 102 ~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~--------~g-----d-~Vi~~~~~y~~~~~~~~~~~~~~~ 163 (447)
+++.+.+++++|.+ .++||+|||+|+.+++.++.. +| + .|+++.+.|+++...+. .+. .
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~-~~g--~ 211 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA-ALG--F 211 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTT--S
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHH-HcC--C
Confidence 34446678888865 599999999999999988742 46 6 79999999999988773 222 2
Q ss_pred Ce-eEEEeCCC-----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-C
Q 013210 164 NI-TTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-S 231 (447)
Q Consensus 164 g~-~~~~v~~~-----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-~ 231 (447)
|. +++.++.+ |+++|++++... ++++|++++++|++|.+.|+++|+++|++||+++|+|++|+.... .
T Consensus 212 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~ 291 (504)
T 2okj_A 212 GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMS 291 (504)
T ss_dssp CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhC
Confidence 44 77788765 899999998321 589999999999999999999999999999999999999944332 1
Q ss_pred -----c-cCC-CCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCC-----------------CccH
Q 013210 232 -----P-ARL-GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGP-----------------TMNP 286 (447)
Q Consensus 232 -----~-~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~-----------------~~~~ 286 (447)
. ... ++|+++.|+||+++++. .+ |+++.++ +++.........+....+. ....
T Consensus 292 ~~~~~~~~g~~~~D~i~~~~hK~~~~p~-~~-g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~ 369 (504)
T 2okj_A 292 RKHRHKLNGIERANSVTWNPHKMMGVLL-QC-SAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDI 369 (504)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTCCCS-CC-EEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCH
T ss_pred HhhHhhcCCcccCCEEEECchhhcCCCc-ce-EEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccH
Confidence 1 112 68999999999999664 35 7776654 5655432111111100000 0112
Q ss_pred HHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---
Q 013210 287 KVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--- 360 (447)
Q Consensus 287 ~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--- 360 (447)
...++.+. +.+.+.+..++..++++++.+.|++.+ +++..+.. | .+++++|.+....
T Consensus 370 l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~---p--------------~~~~v~f~~~~~~~~~ 432 (504)
T 2okj_A 370 FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE---P--------------EHTNVCFWYIPQSLRG 432 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSC---C--------------SSSCEEEEECCGGGSS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCC---C--------------CeEEEEEEEeCccccc
Confidence 22222222 223456677888899999999998874 46554210 1 2346777653210
Q ss_pred -------------HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 361 -------------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 361 -------------~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
....+.+.|... |.+.++.+ + .+-..+.+|+|++-..++++
T Consensus 433 ~~~~~~~~~~~~~~~~~l~~~L~~~---G~~~~~~~--------~---------------~~~~~~~lRis~~~~~~t~e 486 (504)
T 2okj_A 433 VPDSPQRREKLHKVAPKIKALMMES---GTTMVGYQ--------P---------------QGDKANFFRMVISNPAATQS 486 (504)
T ss_dssp CCCCHHHHHHHTTHHHHHHHHHHHH---TSCEEEEE--------E---------------ETTEEEEEEECCCCTTCCHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHhC---CcEEEEee--------E---------------ECCceEEEEEEeCCCCCCHH
Confidence 123555666542 22121111 0 00012579999951567788
Q ss_pred HHHHHHHHHHHhhh
Q 013210 428 RWSQFEKALSRMQD 441 (447)
Q Consensus 428 ~i~~l~~al~~~~~ 441 (447)
+++.+.++|+++.+
T Consensus 487 di~~~~~~l~~~~~ 500 (504)
T 2okj_A 487 DIDFLIEEIERLGQ 500 (504)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877643
No 219
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.88 E-value=2.1e-21 Score=198.98 Aligned_cols=284 Identities=11% Similarity=0.060 Sum_probs=183.7
Q ss_pred HHHHHHHHhCC---CeEEEeCChHHHHHHHHHHh----c---------CC------CC-eEEEeCCCchhHHHHHHhhcC
Q 013210 104 LSRQMAALEGT---EAAYCTASGMSAISSVLMQL----C---------SS------GG-HVVAARTLYGGTHALLTHFFP 160 (447)
Q Consensus 104 l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l----~---------~~------gd-~Vi~~~~~y~~~~~~~~~~~~ 160 (447)
+++.+++++|. +.++||+|||+|+..++.++ + .+ |+ .|+++.+.|.++...+. .+.
T Consensus 145 ~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~-~~g 223 (497)
T 2qma_A 145 VVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS-WMG 223 (497)
T ss_dssp HHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHH-HTT
T ss_pred HHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHH-HcC
Confidence 45559999987 46999999999999999873 2 12 45 79999999999887763 221
Q ss_pred cccCe-eEEEeCCC-----CHHHHHHhhccC---Cce--EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC
Q 013210 161 RACNI-TTTFVDIS-----DHEMVNSAIVQG---RTK--VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV 229 (447)
Q Consensus 161 ~~~g~-~~~~v~~~-----d~~~l~~~i~~~---~t~--lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~ 229 (447)
.|. +++.++.+ |+++|++++++. .++ +|++++++|++|.+.|+++|+++|++||+++|+|++|+...
T Consensus 224 --~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~ 301 (497)
T 2qma_A 224 --LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGAL 301 (497)
T ss_dssp --SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGG
T ss_pred --CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHH
Confidence 243 67777765 889999988321 244 88889999999999999999999999999999999994432
Q ss_pred C--C----ccCC-CCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhc----CC----------CccHH
Q 013210 230 L--S----PARL-GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLL----GP----------TMNPK 287 (447)
Q Consensus 230 ~--~----~~~~-g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~----g~----------~~~~~ 287 (447)
. + ...+ ++|+++.|+||+++++. ++ |+++. ++..++.+..... +.... +. .....
T Consensus 302 ~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~-~~-G~l~~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~~~~~~~r~~~al 378 (497)
T 2qma_A 302 ILSSHKSRLKGVERAHSISVDFHKLFYQTI-SC-GALLVNDKSNFKFLLHHAD-YLNREHDELPNLVDKSIATTKRFDAL 378 (497)
T ss_dssp GGSTTGGGGTTGGGCSEEEEETTTTTCCCS-SC-EEEEESCGGGGGGGCC---------------------CCSCCCTHH
T ss_pred HhCcchHhhcCcccCCEEEEcchhccCCCc-ce-EEEEEeCHHHHHHhcCCch-hcCCccccCCCccccCCCCCCchhHH
Confidence 2 2 1123 67999999999988774 46 66654 4543433311000 00000 00 00112
Q ss_pred HHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----
Q 013210 288 VAFELSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE----- 359 (447)
Q Consensus 288 ~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~----- 359 (447)
..+..++.+ +.+...+++..++++++.+.|++.+ +++..+. .+++++|.+...
T Consensus 379 ~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-------------------~~~~v~f~~~~~~~~~~ 439 (497)
T 2qma_A 379 KVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-------------------SLSTVLFRATHETADLD 439 (497)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-------------------SSSEEEEEECCSSSCHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-------------------CceEEEEEEcCCccCHH
Confidence 223333322 3456677888899999999999874 3554332 234899998642
Q ss_pred HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHH
Q 013210 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 360 ~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~ 438 (447)
.....+.+.+... |++.++ + ... ...+.+|||+ + ..++++.++.+.++|++
T Consensus 440 ~l~~~l~~~l~~~---G~~~~~-~---------~~~--------------~g~~~lRis~~~-~~~t~edi~~~~~~l~~ 491 (497)
T 2qma_A 440 ELNKALRLEALTR---GIAVLG-E---------TIV--------------DGKTALKFTILN-PCLTTSDFESLLSKINM 491 (497)
T ss_dssp HHHHHHHHHHHHH---TSCBCE-E---------EEE--------------TTEEEEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCEEEE-e---------eEE--------------CCEEEEEEEecC-CCCCHHHHHHHHHHHHH
Confidence 1123455555432 221111 0 000 0135799998 7 77888888888888776
Q ss_pred hh
Q 013210 439 MQ 440 (447)
Q Consensus 439 ~~ 440 (447)
+.
T Consensus 492 ~~ 493 (497)
T 2qma_A 492 LA 493 (497)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 220
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.88 E-value=3.7e-21 Score=203.55 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=151.8
Q ss_pred CchHHHHHHHHHHHhCCCeEE-EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC----
Q 013210 98 NPTVLNLSRQMAALEGTEAAY-CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---- 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~-~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~---- 172 (447)
...+.++++.+|+++|++..+ +++|+++||.+++++++++||+|+++.++|.++...+ + +..|.++++++.
T Consensus 172 ~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~---~-~l~Ga~~v~v~~~~~~ 247 (730)
T 1c4k_A 172 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSA---L-AMAGGRPVYLQTNRNP 247 (730)
T ss_dssp BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH---T-TTTCCEEEEECEEECT
T ss_pred hHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHH---H-HHCCCEEEEEeCCccc
Confidence 456789999999999998855 5555569999999999999999999999999988761 1 236888777653
Q ss_pred ------CCHHHH-----HHhhccCC------c----eEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCC
Q 013210 173 ------SDHEMV-----NSAIVQGR------T----KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVL 230 (447)
Q Consensus 173 ------~d~~~l-----~~~i~~~~------t----~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~ 230 (447)
.|+++| ++++ +++ + ++|++++| |++|.+.|+++|+++|+++|+++|+|++|+ .+.+
T Consensus 248 ~~i~g~id~e~L~~~~le~~i-~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f 325 (730)
T 1c4k_A 248 YGFIGGIYDSDFDEKKIRELA-AKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQF 325 (730)
T ss_dssp TCCEEEECGGGSCHHHHHHHT-TTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGS
T ss_pred cCccCCCCHHHHhhhHHHHHh-hcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccccc
Confidence 166666 8888 443 5 89999998 589999999999999999999999999994 3222
Q ss_pred C-------ccC---CCCe----EEEeCCCccccCCCCeeEEEEEcChHHH---------HHHHHHhhhhhhhcCCCccH-
Q 013210 231 S-------PAR---LGAD----VVVHSISKFISGGADIIAGAVCGPANLV---------NSMMDLHQGALMLLGPTMNP- 286 (447)
Q Consensus 231 ~-------~~~---~g~d----i~~~S~sK~~g~~g~~igG~l~~~~~~~---------~~l~~~~~~~~~~~g~~~~~- 286 (447)
. +.. +++| +++.|+||++++++ .||+++.+++.+ ..+..... ....++++.
T Consensus 326 ~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~---~~~stsp~~~ 400 (730)
T 1c4k_A 326 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFN---LFMSTSPFYP 400 (730)
T ss_dssp SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHH---HHSCSSCCHH
T ss_pred CcccCCcCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHH---HhCCCCCcHH
Confidence 2 232 2777 99999999988654 347774432221 22222211 122222222
Q ss_pred -HHHHH-HHccCC--cHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCC
Q 013210 287 -KVAFE-LSERIP--HLGLRMKEHCHRALIFARRMKK-L-GLKVLYP 327 (447)
Q Consensus 287 -~~a~~-~~~~~~--~l~~~~~~~~~~~~~l~~~L~~-~-~~~v~~p 327 (447)
.++.. +...+. .-.+++++..++++++++.|++ . ++++..|
T Consensus 401 ~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p 447 (730)
T 1c4k_A 401 MYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVP 447 (730)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSC
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccc
Confidence 22221 222122 2345677888999999999988 3 5566544
No 221
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.88 E-value=4.5e-21 Score=195.19 Aligned_cols=292 Identities=12% Similarity=0.091 Sum_probs=190.4
Q ss_pred CCchHHHHHHHH----HHHhCCC-----------eEEEeCChHHHHHHHHHHhcC-------------------CCCeEE
Q 013210 97 FNPTVLNLSRQM----AALEGTE-----------AAYCTASGMSAISSVLMQLCS-------------------SGGHVV 142 (447)
Q Consensus 97 ~~~~~~~l~~~i----a~l~g~~-----------~~~~tsggt~A~~~al~~l~~-------------------~gd~Vi 142 (447)
..|...++|+.+ ++++|.+ ..+||+|||+||..++.+... +++.|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 356666677654 6777765 489999999999999876531 235799
Q ss_pred EeCCCchhHHHHHHhhcCcccCeeEEEeCCC----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 143 AARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 143 ~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
++..+|.++...+. ..|.+++.++.+ |+++|+++|+.. .+.+|+++.++|++|.+.|+++|+++|+
T Consensus 187 ~s~~~H~s~~~~~~-----~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~ 261 (475)
T 3k40_A 187 CSDQAHSSVERAGL-----LGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGN 261 (475)
T ss_dssp EETTSCHHHHHHHH-----HHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred ECCCchHHHHHHHH-----HcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHH
Confidence 99999999888773 258889988875 899999998321 1678888999999999999999999999
Q ss_pred hcCCEEEEeCCCCCC-CCCcc----CC---CCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHH---H-hhh-----
Q 013210 214 DKGVTVVVDNTFSPL-VLSPA----RL---GADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMD---L-HQG----- 275 (447)
Q Consensus 214 ~~gi~livD~~~~~~-~~~~~----~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~---~-~~~----- 275 (447)
+||+++|+|++|+.. ...+. -. .+|.++.|+||+++.|.. +|++++.+++.+. .+.. + ...
T Consensus 262 ~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~ 340 (475)
T 3k40_A 262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD-CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSA 340 (475)
T ss_dssp HTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESSGGGC-------------------
T ss_pred HhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc-eEEEEEeCHHHHHHHhcCCccccCCCcCCCC
Confidence 999999999999442 22211 11 369999999998886644 4344455554432 2211 0 000
Q ss_pred -----hhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCC
Q 013210 276 -----ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 276 -----~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
.....+........+.+++ +.+.+.+++++..++++++.+.|++.+ +++..|.
T Consensus 341 ~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~------------------- 401 (475)
T 3k40_A 341 PDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI------------------- 401 (475)
T ss_dssp --------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-------------------
T ss_pred CCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------------
Confidence 0000111111222333222 234466778888999999999999984 4665432
Q ss_pred cCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013210 348 FGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 426 (447)
Q Consensus 348 ~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~ 426 (447)
..++++|.+++ ......+.++|... |.+.++ |... .....+|+|++...+++
T Consensus 402 ~~~iv~f~~~~~~~~~~~l~~~L~~~---g~~~~~----------~~~~--------------~g~~~lR~~~~~~~tt~ 454 (475)
T 3k40_A 402 NMGLVCFRLKGSNERNEALLKRINGR---GHIHLV----------PAKI--------------KDVYFLRMAICSRFTQS 454 (475)
T ss_dssp BTTEEEEEESSCHHHHHHHHHHHHHH---TSCBCE----------EEEE--------------TTEEEEEEECCCTTCCH
T ss_pred ceEEEEEEeCCchHHHHHHHHHHHhC---CcEEEE----------eeEE--------------CCEEEEEEEeCCCCCCH
Confidence 23489999863 44456777777752 222221 1111 01367999987234466
Q ss_pred HHHHHHHHHHHHhh
Q 013210 427 QRWSQFEKALSRMQ 440 (447)
Q Consensus 427 ~~i~~l~~al~~~~ 440 (447)
+.|+.+.++|+++.
T Consensus 455 ~di~~~~~~i~~~~ 468 (475)
T 3k40_A 455 EDMEYSWKEVSAAA 468 (475)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666553
No 222
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.88 E-value=4e-22 Score=200.16 Aligned_cols=252 Identities=17% Similarity=0.174 Sum_probs=167.2
Q ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHH--hcCCCCeEEEeCCCchhHHHHHHhhc---------Cccc
Q 013210 96 HFNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQ--LCSSGGHVVAARTLYGGTHALLTHFF---------PRAC 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~--l~~~gd~Vi~~~~~y~~~~~~~~~~~---------~~~~ 163 (447)
+..+...++++.+++++ +.+.++||+||++|+..+++. .+..+++||+.++.|+++........ +...
T Consensus 89 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~ 168 (424)
T 2e7u_A 89 APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSA 168 (424)
T ss_dssp SCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESST
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCC
Confidence 35666789999999998 678899999999999999985 23345789999999988643221100 0112
Q ss_pred Ce------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013210 164 NI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS 231 (447)
Q Consensus 164 g~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~ 231 (447)
|+ .+..++..|+++|++++++ +++++|++++.++++|.+.+ +++|.++ ++||+++|+||+|+++...
T Consensus 169 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g 247 (424)
T 2e7u_A 169 GVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA 247 (424)
T ss_dssp TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS
T ss_pred CCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc
Confidence 32 3556677799999998842 46778888777777999887 9999999 9999999999999766321
Q ss_pred c------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 232 P------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 232 ~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
. .....|++ |+||.+++ |.++ |++++++++++.+..... ...+..++.+++.++..++..++......
T Consensus 248 ~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 323 (424)
T 2e7u_A 248 FGGATELLGLKPDLV--TLGKILGG-GLPA-AAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYY 323 (424)
T ss_dssp TTHHHHHHTCCCSEE--EECGGGGT-TSSC-EEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHH
T ss_pred hhHHHHHhCCCcchh--hhhhhhhC-Ccce-EEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 1 11235654 78999995 8888 999999988876654111 01112223233333333332221113355
Q ss_pred HHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------------HHHHHHHH
Q 013210 304 KEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKANRLM 366 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------------~~~~~~l~ 366 (447)
++..++++++.+.|++. +.....+ +.|.++++.+.. ......+.
T Consensus 324 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (424)
T 2e7u_A 324 AYLEDLGARLEAGLKEVLKEKGLPHTVN-------------------RVGSMITVFFTEGPVVTFQDARRTDTELFKRFF 384 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEE-------------------EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEE-------------------eeceEEEEEEeCCCCcchhhhcccCHHHHHHHH
Confidence 66777888888888663 3311111 356799999864 23356677
Q ss_pred HHhhc
Q 013210 367 NYLQN 371 (447)
Q Consensus 367 ~~l~~ 371 (447)
+.|..
T Consensus 385 ~~l~~ 389 (424)
T 2e7u_A 385 HGLLD 389 (424)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77765
No 223
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.88 E-value=6.1e-21 Score=194.60 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=193.5
Q ss_pred CCchHHHHHHHH----HHHhCCC------------eEEEeCChHHHHHHHHHHhcC-------------------CCCeE
Q 013210 97 FNPTVLNLSRQM----AALEGTE------------AAYCTASGMSAISSVLMQLCS-------------------SGGHV 141 (447)
Q Consensus 97 ~~~~~~~l~~~i----a~l~g~~------------~~~~tsggt~A~~~al~~l~~-------------------~gd~V 141 (447)
..|...++|+.+ ++++|.+ ..+||+|||+||..++.+... +++.|
T Consensus 112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 191 (481)
T 4e1o_A 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVA 191 (481)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEE
Confidence 356666777765 5566754 469999999999999876532 45689
Q ss_pred EEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHH
Q 013210 142 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRL 211 (447)
Q Consensus 142 i~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~l 211 (447)
+++...|.++...+. ..|.+++.++.+ |+++|+++|+.. .+.+|+++.++|++|.+.|+++|+++
T Consensus 192 ~~s~~~H~s~~~~~~-----~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~l 266 (481)
T 4e1o_A 192 YASDQAHSSVEKAGL-----ISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPI 266 (481)
T ss_dssp EEETTSCHHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred EEcCcchHHHHHHHH-----hCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHH
Confidence 999999999888763 257888888875 899999998322 16788889999999999999999999
Q ss_pred HHhcCCEEEEeCCCCCC-CCCc----cCCC---CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh-----
Q 013210 212 AHDKGVTVVVDNTFSPL-VLSP----ARLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM----- 278 (447)
Q Consensus 212 a~~~gi~livD~~~~~~-~~~~----~~~g---~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~----- 278 (447)
|++||+++|+|++|+.. ...+ ...| +|.++.++||+++.|.. .|++++.+++.+.........+..
T Consensus 267 a~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~~~~yl~~~~~~ 345 (481)
T 4e1o_A 267 CAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD-CTGFWVKDKYKLQQTFSVNPIYLRHANSG 345 (481)
T ss_dssp HHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESBHHHHHTTTCCCCGGGCCTTTT
T ss_pred HHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc-eEEEEEeCHHHHHHHhcCCchhccCcccC
Confidence 99999999999999443 2221 1113 59999999999997755 334555555554322111110100
Q ss_pred ----------hcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccC
Q 013210 279 ----------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKE 345 (447)
Q Consensus 279 ----------~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~ 345 (447)
..+........+..++ +.+.+.+++++..++++++.+.|++.+ +++..|.
T Consensus 346 ~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~----------------- 408 (481)
T 4e1o_A 346 VATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR----------------- 408 (481)
T ss_dssp TSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC-----------------
T ss_pred CCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------
Confidence 0111122333333332 334567788889999999999999874 4554332
Q ss_pred CCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013210 346 YGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 424 (447)
Q Consensus 346 ~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 424 (447)
..++++|.+++ ......+.++|... |.+.++ |... .....+|+|++...+
T Consensus 409 --~~~~v~f~~~~~~~~~~~l~~~L~~~---g~~~~~----------~~~~--------------~g~~~lR~~~~~~~t 459 (481)
T 4e1o_A 409 --HLGLVVFRLKGPNSLTENVLKEIAKA---GRLFLI----------PATI--------------QDKLIIRFTVTSQFT 459 (481)
T ss_dssp --CSSEEEEEESSCHHHHHHHHHHHHHH---CSSBCE----------EEEE--------------TTEEEEEEECCCTTC
T ss_pred --ceeEEEEEeCCchHHHHHHHHHHHhC---CeEEEE----------eeEE--------------CCEEEEEEEeCCCCC
Confidence 23489999863 44456777777652 222222 1110 013579999872344
Q ss_pred HHHHHHHHHHHHHHhh
Q 013210 425 LDQRWSQFEKALSRMQ 440 (447)
Q Consensus 425 ~~~~i~~l~~al~~~~ 440 (447)
+++.|+.+.++|+++.
T Consensus 460 t~~di~~~~~~i~~~~ 475 (481)
T 4e1o_A 460 TRDDILRDWNLIRDAA 475 (481)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6777777777766553
No 224
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.87 E-value=4.1e-21 Score=193.66 Aligned_cols=282 Identities=13% Similarity=0.121 Sum_probs=186.0
Q ss_pred chHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHH-hcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGTEA--AYCTASGMSAISSVLMQ-LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~--~~~tsggt~A~~~al~~-l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
....++++.+++++|.+. +++++|++.++.+++.+ .+++||+|+++.++|+++...+...... .|+++++++..
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~-~G~~v~~v~~~~~ 186 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEA-VGAKLLTLPLEGG 186 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHH-TTCEEEEECCBTT
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHH-CCCEEEEEcCcCC
Confidence 457899999999999875 47999999444444333 2578999999999999998777543333 68899988753
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCC-C-CCCCCCccCCCCeEEEeCCCc---
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT-F-SPLVLSPARLGADVVVHSISK--- 246 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~-~-~~~~~~~~~~g~di~~~S~sK--- 246 (447)
|+++ + +++|++|++++| ||+|.+.|+++|+++|+++|+++|+|.. + .+....+..+++|++++|.+|
T Consensus 187 ~~d~~~----i-~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~ 260 (438)
T 1wyu_A 187 RTPLPE----V-GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGL 260 (438)
T ss_dssp BCCCCC----C-CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTC
T ss_pred ccCHHH----h-CCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCC
Confidence 3333 6 678999999999 9999999999999999999999997743 3 122123345689999999555
Q ss_pred --cccCCCCeeEEEEEcChHHHHHHHHHh--------------------hhh-hhhcC-CCc---cHHHHHHH---HccC
Q 013210 247 --FISGGADIIAGAVCGPANLVNSMMDLH--------------------QGA-LMLLG-PTM---NPKVAFEL---SERI 296 (447)
Q Consensus 247 --~~g~~g~~igG~l~~~~~~~~~l~~~~--------------------~~~-~~~~g-~~~---~~~~a~~~---~~~~ 296 (447)
+++++ ++ |+++.++++++.+.... ... ....+ ... ....+..+ +..+
T Consensus 261 ~~~~~Gp--~~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~ 337 (438)
T 1wyu_A 261 PMGFGGP--HF-GFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL 337 (438)
T ss_dssp CCGGGCS--CC-EEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH
T ss_pred CccCCCC--Ce-eEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHh
Confidence 34444 35 89999888765542110 000 00011 111 22222111 2111
Q ss_pred --CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013210 297 --PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA 373 (447)
Q Consensus 297 --~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~ 373 (447)
+.+.+..++..++++++.+.|++. ++++..|. + .-.++.|.++. ....+.+.|...
T Consensus 338 ~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~--------------~~~~~~~~~~~--~~~~~~~~L~~~- 396 (438)
T 1wyu_A 338 GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK----P--------------FFNEFALALPK--DPEAVRRALAER- 396 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS----S--------------BCSEEEEECSS--CHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC----C--------------eEEEEEEeCCC--CHHHHHHHHHHC-
Confidence 235556677889999999999987 56665432 1 11245566541 245677777652
Q ss_pred ccccccc--cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 374 QFGFMAV--SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 374 ~~g~~~v--s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
| +.+ ..|.. .+++.||||++ ..++++.++.+.++|+++
T Consensus 397 --g-i~v~~~~~~~------------------------~~~~~lRis~~-~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 397 --G-FHGATPVPRE------------------------YGENLALFAAT-ELHEEEDLLALREALKEV 436 (438)
T ss_dssp --T-CCCCEECCTT------------------------SCSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred --C-ceeccccccc------------------------cCCCeEEEEec-ccCCHHHHHHHHHHHHHH
Confidence 3 343 22311 11578999999 888999999998888765
No 225
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.78 E-value=8.3e-24 Score=213.38 Aligned_cols=243 Identities=15% Similarity=0.112 Sum_probs=168.1
Q ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCcccCe--eEEEe
Q 013210 96 HFNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFV 170 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~~~~v 170 (447)
+.++...+++++|++++ +.+.++|++||++|+..+++.+. ..+++||+.+..|++...... ..+...|+ .+..+
T Consensus 137 ~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~~~~ 215 (465)
T 2yky_A 137 TQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-SGHAPTNAPYHVVLG 215 (465)
Confidence 35666788999999998 67889999999999999998642 345899999999988654331 00111344 44455
Q ss_pred CCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc----cCCCCeEE
Q 013210 171 DISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP----ARLGADVV 240 (447)
Q Consensus 171 ~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~----~~~g~di~ 240 (447)
+.+|+++|++++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+ +.... ..+++...
T Consensus 216 ~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pD 294 (465)
T 2yky_A 216 VYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISAD 294 (465)
Confidence 66789999999832 68999999998888998876 9999999999999999999998 53211 11243334
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHH--h--hhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDL--H--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--~--~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
+.|++|++|+ |.++ |++++++++++.+... . ....+..++++++.++.+.+..++. ....++..++.+++.+.
T Consensus 295 i~t~sK~lg~-G~pi-G~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-~~~~~~~~~~~~~l~~~ 371 (465)
T 2yky_A 295 LTTLGKYIGG-GMSF-GAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT-RQAASDLSASGDRFRAN 371 (465)
Confidence 5579999997 8898 8999999998887651 1 1122344555555555444444332 23456677777888888
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
|++...+...+. ...+.|.+++|.+.+
T Consensus 372 L~~~~~~~~~~~---------------~v~g~G~~~~i~~~~ 398 (465)
T 2yky_A 372 LNRIAVENQAPL---------------QFTGLGSLGTIHFSR 398 (465)
Confidence 766421111111 112578899998864
No 226
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.85 E-value=3.1e-20 Score=198.13 Aligned_cols=211 Identities=13% Similarity=0.054 Sum_probs=149.2
Q ss_pred CchHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
...+.++++.+++++|.+.. ++++|+++|+.+++.+++++||+|+++.++|.++...+. ..|.++++++.+
T Consensus 204 ~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~-----~~G~~~v~v~~~~~~ 278 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLM-----LTGAKPVYMVPSRNR 278 (755)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HHCCEEEEECCCBCT
T ss_pred ccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-----HcCCEEEEEeCCCCc
Confidence 45678999999999999875 556666799999999999999999999999999887763 258888877642
Q ss_pred ------------CHHHHHHhhcc-CCce--------EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC
Q 013210 174 ------------DHEMVNSAIVQ-GRTK--------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS 231 (447)
Q Consensus 174 ------------d~~~l~~~i~~-~~t~--------lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~ 231 (447)
|+++|++++++ ++++ +|++++| |++|.+.|+++|+++|++||+++|+|++|+ .+.+.
T Consensus 279 ~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~ 357 (755)
T 2vyc_A 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFN 357 (755)
T ss_dssp TSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGC
T ss_pred cccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccC
Confidence 79999999843 2454 8999998 799999999999999999999999999994 32222
Q ss_pred -------ccCCC--CeE------EEeCCCccccCCCCeeEEEEEcChH---H-HHHHHHHhhhhhhhcCCCcc--HHHHH
Q 013210 232 -------PARLG--ADV------VVHSISKFISGGADIIAGAVCGPAN---L-VNSMMDLHQGALMLLGPTMN--PKVAF 290 (447)
Q Consensus 232 -------~~~~g--~di------~~~S~sK~~g~~g~~igG~l~~~~~---~-~~~l~~~~~~~~~~~g~~~~--~~~a~ 290 (447)
+. .+ +|+ ++.|+||+++++. .||+++.+++ + ...+..... ....++++ ..++.
T Consensus 358 ~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~---~~~s~sp~~~~iaal 431 (755)
T 2vyc_A 358 PIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYM---MHATTSPLYAICASN 431 (755)
T ss_dssp GGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHH---HTSCSSCCHHHHHHH
T ss_pred cccCCcchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence 22 45 676 9999999988664 2477765433 1 123322211 01112222 22222
Q ss_pred H-HHccCCc--HHHHHHHHHHHHHHHHHHHHhC
Q 013210 291 E-LSERIPH--LGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 291 ~-~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
. ++..+.. ...+.++..++.+++++.|+++
T Consensus 432 ~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l 464 (755)
T 2vyc_A 432 DVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_dssp HHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2222222 3456777888888888888764
No 227
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.85 E-value=3e-20 Score=185.28 Aligned_cols=243 Identities=13% Similarity=0.063 Sum_probs=154.0
Q ss_pred cccccCCHHHHH-HhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHh-CC----C--eEEEeCChHHHHHHHHHHh---
Q 013210 66 ATFTVMEPETMR-RMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE-GT----E--AAYCTASGMSAISSVLMQL--- 134 (447)
Q Consensus 66 tt~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~-g~----~--~~~~tsggt~A~~~al~~l--- 134 (447)
.++++|.+.+.. ...... ..|.|.-. .-..++++.+++++ |. + ..+-|.|||.|+..++..+
T Consensus 60 ~~~vl~~Vk~A~~~~~~~~-----~~~~Y~p~--~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~ 132 (420)
T 4h51_A 60 RPYPLRVVRKAEQLLLDMN-----LDYEYLPI--SGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRV 132 (420)
T ss_dssp CBCCCHHHHHHHHHHHHTT-----CCCCCCCT--TCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHhcCC-----CCCCCCCc--CChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHh
Confidence 345566663333 333221 23445432 22357888888874 32 1 2456899999988777654
Q ss_pred -cCCCCeEEEeCCCchhHHHHHHhhcCcccCee-EEEe---CCC----CHHHHHHhhc--cCCceEEEEEcCCCCCcccc
Q 013210 135 -CSSGGHVVAARTLYGGTHALLTHFFPRACNIT-TTFV---DIS----DHEMVNSAIV--QGRTKVLYFESISNPTLAVA 203 (447)
Q Consensus 135 -~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~-~~~v---~~~----d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~ 203 (447)
..+||.|++++|.|+.+...+.. .|.+ +... +.+ |.+.+.+.++ .++++++++.+|+||||.+.
T Consensus 133 ~~~pgd~V~ip~P~w~~y~~i~~~-----aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~ 207 (420)
T 4h51_A 133 FDAETTPIYLSDPTWPNHYGVVKA-----AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDP 207 (420)
T ss_dssp SCTTTSCEEEEESCCTHHHHHHHH-----TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCC
T ss_pred cCCCCCEEEEecCCchhHHHHHHH-----cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCC
Confidence 46899999999999999888742 4543 3222 221 6777766652 46778888899999999998
Q ss_pred C---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHH
Q 013210 204 N---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 268 (447)
Q Consensus 204 ~---l~~I~~la~~~gi~livD~~~~~~~~~~~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~ 268 (447)
+ +++|+++|+++++++++|++|.++.+... .....+++.|+||.|+.+|+|+ ||++++.+..+.
T Consensus 208 ~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Rv-G~~~~~~~~~~~ 286 (420)
T 4h51_A 208 SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERA-GTLSLLLKDKTK 286 (420)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSCHHH
T ss_pred CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCce-EEEEecccCHHH
Confidence 5 67889999999999999999977755311 1135688999999999999999 888664433322
Q ss_pred HH-------HHhhhhhhhcCCCccHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 269 MM-------DLHQGALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 269 l~-------~~~~~~~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
.. .... ......+...+..+...+.. .+++....+++.++++.|.+.|++.+.
T Consensus 287 ~~~~~~~l~~~~r-~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~ 353 (420)
T 4h51_A 287 RADVKSVMDSLIR-EEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQT 353 (420)
T ss_dssp HHHHHHHHHHHHH-TTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhh-cccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 1211 11111122222222222221 112334456678889999999988753
No 228
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.83 E-value=2.8e-20 Score=189.26 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHh--CCCeEEEeCChHHHHHHHHHHhc-------C------------------CC---CeEEEeCCCch
Q 013210 100 TVLNLSRQMAALE--GTEAAYCTASGMSAISSVLMQLC-------S------------------SG---GHVVAARTLYG 149 (447)
Q Consensus 100 ~~~~l~~~ia~l~--g~~~~~~tsggt~A~~~al~~l~-------~------------------~g---d~Vi~~~~~y~ 149 (447)
..+.+++.++++. +.+.++||+||++|+..+++.+. + +| ++||+.++.||
T Consensus 111 l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yH 190 (472)
T 1ohv_A 111 FVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFH 190 (472)
T ss_dssp HHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcc
Confidence 3344444455555 56789999999999999998763 1 35 79999999998
Q ss_pred hHHHHHHhhcCc----ccCe-----eEEEeCC-----------------CCHHHHHHhhccC------CceEEEEEcCCC
Q 013210 150 GTHALLTHFFPR----ACNI-----TTTFVDI-----------------SDHEMVNSAIVQG------RTKVLYFESISN 197 (447)
Q Consensus 150 ~~~~~~~~~~~~----~~g~-----~~~~v~~-----------------~d~~~l~~~i~~~------~t~lV~i~~~~N 197 (447)
+........... ..+. ....++. .|+++|++++ ++ ++++|++++++|
T Consensus 191 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~vive~v~~ 269 (472)
T 1ohv_A 191 GRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLI-VKYRKKKKTVAGIIVEPIQS 269 (472)
T ss_dssp CSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHH-HHHHHTTCCEEEEEECSSBC
T ss_pred cccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHH-HhcCCCCCCEEEEEEcCCcC
Confidence 865443211110 0011 1111110 1578888888 43 799999999999
Q ss_pred CCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCCC----CeEEEeCCCccc-cCCCCeeEEEEEcCh
Q 013210 198 PTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARLG----ADVVVHSISKFI-SGGADIIAGAVCGPA 263 (447)
Q Consensus 198 ptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~g----~di~~~S~sK~~-g~~g~~igG~l~~~~ 263 (447)
++|.+.| +++|.++|++||+++|+||+|+++... ...++ +|++ |++|.+ + ||+++ ++
T Consensus 270 ~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~-~~ 340 (472)
T 1ohv_A 270 EGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH-KE 340 (472)
T ss_dssp TTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE-CG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC-ch
Confidence 9999887 999999999999999999999654322 12234 5665 578994 4 37766 65
Q ss_pred HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHHHHHHh
Q 013210 264 NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHELLKSMA 342 (447)
Q Consensus 264 ~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l~~~~~ 342 (447)
++. .+..... ..+..++.+.+.++..++..+.. ....+++.+++++|.+.|+++... +|. +..
T Consensus 341 ~~~-~~~~~~~-~~T~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~--~~~~v~~----------- 404 (472)
T 1ohv_A 341 EFR-PNAPYRI-FNTWLGDPSKNLLLAEVINIIKR-EDLLSNAAHAGKVLLTGLLDLQAR--YPQFISR----------- 404 (472)
T ss_dssp GGS-CSSSSSS-CCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH--CTTTCEE-----------
T ss_pred hhc-ccccccc-cCccCccHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhh--CCCcEEe-----------
Confidence 542 1111111 11122333333333333322211 124566777888888888764110 111 000
Q ss_pred ccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013210 343 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 422 (447)
Q Consensus 343 ~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~ 422 (447)
..+.|.+++|.+++......+...|... |+ .+..+ ..+.||||++ .
T Consensus 405 --~~~~g~~~~~~~~~~~~~~~~~~~l~~~---Gv-~~~~~---------------------------g~~~iRi~~~-~ 450 (472)
T 1ohv_A 405 --VRGRGTFCSFDTPDESIRNKLISIARNK---GV-MLGGC---------------------------GDKSIRFRPT-L 450 (472)
T ss_dssp --EEEETTEEEEECSSHHHHHHHHHHHHHT---TE-ECEEE---------------------------TTTEEEECCC-T
T ss_pred --ecCCceEEEEEeCChhHHHHHHHHHHHC---Ce-EEecC---------------------------CCCEEEEECC-C
Confidence 0135779999887654566777777642 32 22111 1368999999 8
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 013210 423 GTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 423 ~~~~~~i~~l~~al~~~~ 440 (447)
..+++.|+.+.++|+++.
T Consensus 451 ~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 451 VFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 888888888888887654
No 229
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.78 E-value=7.2e-19 Score=176.20 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=150.6
Q ss_pred chHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHh-hcCcccCeeEEEeCCCC
Q 013210 99 PTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTH-FFPRACNITTTFVDISD 174 (447)
Q Consensus 99 ~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~-~~~~~~g~~~~~v~~~d 174 (447)
+...++.+.|++.+ +.+.++|++||+||+..|++... ...++|+.....||+....... ..+.........++.+|
T Consensus 127 ~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd 206 (454)
T 4ao9_A 127 LLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYND 206 (454)
T ss_dssp SSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCch
Confidence 44567888888877 56789999999999999998653 2346899999999885422200 00111223556678889
Q ss_pred HHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccCCCCeEEEeC
Q 013210 175 HEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-----SPARLGADVVVHS 243 (447)
Q Consensus 175 ~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~-----~~~~~g~di~~~S 243 (447)
++.+++.+++ +++.+|++|.+.+..|.+.| +++|.++|++||+++|+||++++-.. .-.....|+++
T Consensus 207 ~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t-- 284 (454)
T 4ao9_A 207 AQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT-- 284 (454)
T ss_dssp HHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE--
T ss_pred HHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE--
Confidence 9999998843 46899999999999999987 99999999999999999999953111 11122357765
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHh---hhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLH---QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~---~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
++|.+|+ |..+ |++++++++++.+.... ....++.|++++..++.+.+..+++ ....++..++.++|.+.|+++
T Consensus 285 ~gK~lgg-G~Pi-ga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l 361 (454)
T 4ao9_A 285 LGKYIGG-GMSF-GAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNAL 361 (454)
T ss_dssp EEGGGGT-TSSC-EEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccCC-CCcc-eeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHH
Confidence 8899985 5677 88899999987764321 1122344555555555555555544 335566677777777777653
No 230
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.76 E-value=1e-17 Score=175.84 Aligned_cols=211 Identities=12% Similarity=0.124 Sum_probs=149.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCCh-HHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASG-MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsgg-t~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
....+.++++.+|+++|++..+|+.+| +.||.+++++++++||+|+++.+.|.++...+. ..|.++++++..
T Consensus 193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~-----lsGa~pv~v~~~~~ 267 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMM-----MSDVTPIYFRPTRN 267 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HSCCEEEEECCCBC
T ss_pred CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEecccc
Confidence 445678999999999999998776666 699999999999999999999999999988762 368888887742
Q ss_pred -------------CHHHHHHhhcc-CCce---EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC----
Q 013210 174 -------------DHEMVNSAIVQ-GRTK---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS---- 231 (447)
Q Consensus 174 -------------d~~~l~~~i~~-~~t~---lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~---- 231 (447)
|+++|++++++ ++++ +|++++| |++|.+.|+++|.++|++++ +++|++|+ .+.+.
T Consensus 268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGT
T ss_pred ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccc
Confidence 79999999843 3445 8999999 99999999999999998764 79999994 33222
Q ss_pred ---ccCCC--CeEE---EeCCCccccCCCCeeEEEEEcChHH-HHHHHHHhhhhhhhcCCCccH--HHHHH-HHccCC--
Q 013210 232 ---PARLG--ADVV---VHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGPTMNP--KVAFE-LSERIP-- 297 (447)
Q Consensus 232 ---~~~~g--~di~---~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~~~~~--~~a~~-~~~~~~-- 297 (447)
....+ +|++ +.|+||.+++... ||++..+.++ ...+..... . ...++++. .++.. +.+.++
T Consensus 345 ~~~al~~g~~aD~vii~~~S~hKtL~gltq--gs~i~v~~~i~~~~~~~~~~-~--~~STSpsy~~~AsldaA~~~~~~~ 419 (715)
T 3n75_A 345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQ--ASMIHVKGDVNEETFNEAYM-M--HTTTSPHYGIVASTETAAAMMKGN 419 (715)
T ss_dssp TSSTTSSSCCTTCEEEEEECHHHHSSCCTT--CEEEEEESCCCHHHHHHHHH-H--TSCSSCCHHHHHHHHHHHHHHSHH
T ss_pred cccccccCcCCCEEEEEEecccccccCCCC--eeEEEeCchhhHHHHHHHHH-h--hcCCCchHHHHHHHHHHHHHHHhh
Confidence 22223 5655 9999999986532 4777665432 223333222 1 22222332 22222 222223
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhC
Q 013210 298 HLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
.-.++.++..++.+++++.|+++
T Consensus 420 ~g~~~~~~l~~~a~~~r~~L~~i 442 (715)
T 3n75_A 420 AGKRLINGSIERAIKFRKEIKRL 442 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Confidence 22446677888888899888765
No 231
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.74 E-value=1e-16 Score=161.24 Aligned_cols=254 Identities=16% Similarity=0.167 Sum_probs=155.5
Q ss_pred CchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcC------cc---c
Q 013210 98 NPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP------RA---C 163 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~------~~---~ 163 (447)
++...++.++|+++.. .+.++|++||+||+..|++... ...++|+.....||+.......... .. .
T Consensus 106 ~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~ 185 (456)
T 4atq_A 106 YEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPF 185 (456)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSC
T ss_pred cHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCc
Confidence 4445678888888874 4569999999999999997542 2346899999999886433211100 00 1
Q ss_pred CeeEEEeCCC-----------CHHHH-------HHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEE
Q 013210 164 NITTTFVDIS-----------DHEMV-------NSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVV 221 (447)
Q Consensus 164 g~~~~~v~~~-----------d~~~l-------~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~liv 221 (447)
...+..++.. +.+.+ ++.+..+++.+|++|.++...|.+.| +++|.++|++||+++|+
T Consensus 186 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~ 265 (456)
T 4atq_A 186 APEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIA 265 (456)
T ss_dssp CSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred cccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEe
Confidence 1234444432 22332 33332347899999999999998865 89999999999999999
Q ss_pred eCCCCCCCC-----Ccc--CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc
Q 013210 222 DNTFSPLVL-----SPA--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294 (447)
Q Consensus 222 D~~~~~~~~-----~~~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~ 294 (447)
||+++++.. ... ....|+++ ++|.+| .|..+ |++++++++++.+..... ..++.|++++..++.+.+.
T Consensus 266 DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg-gg~P~-~av~~~~~i~~~~~~~~~-~~Tf~gnpla~aaala~L~ 340 (456)
T 4atq_A 266 DEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIA-GGLPL-SAITGRADLLDAVHPGGL-GGTYGGNPVACAAALAAID 340 (456)
T ss_dssp ECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGG-TTSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHHHHHHHHHH
T ss_pred cccccccCCccccccccccCCCCchhh--hhhccc-CcCCc-eeeEecHHHHhcccccCC-CCCCCCChHHHHhhHHHHH
Confidence 999966531 112 22467776 779998 46778 888888888877654433 2335555555555544443
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-------CHHHHH
Q 013210 295 RIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-------TEEKAN 363 (447)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-------~~~~~~ 363 (447)
.++. ....++..+..+++.+.|+++ +.. ..|-+ .+..|.|.++.|++. ..+.+.
T Consensus 341 ~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~-~~~~v-------------~~VRG~Gl~~giel~~~~~~~~~~~~~~ 405 (456)
T 4atq_A 341 TMEQ-HDLNGRARHIEELALGKLRELAAELSAG-GGSVV-------------GDIRGRGAMLAIELVQPGSKEPNAELTK 405 (456)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHHHHHHCC------CE-------------EEEEEETTEEEEEEBCTTSCCBCHHHHH
T ss_pred HHhh-ccHHHHHHHHHHHHHHHHHHHHHhcccc-cCCce-------------EEeeecceEEEEEEecCCCCCcCHHHHH
Confidence 3321 112334444455555555442 210 00100 022368899999984 234456
Q ss_pred HHHHHhhc
Q 013210 364 RLMNYLQN 371 (447)
Q Consensus 364 ~l~~~l~~ 371 (447)
.+...+..
T Consensus 406 ~v~~~~~~ 413 (456)
T 4atq_A 406 AVAAACLK 413 (456)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67777665
No 232
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.74 E-value=4.6e-16 Score=157.05 Aligned_cols=289 Identities=15% Similarity=0.214 Sum_probs=177.7
Q ss_pred CchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc-------CC-CCeEEEeCCCchhHHHHHHh---------h
Q 013210 98 NPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC-------SS-GGHVVAARTLYGGTHALLTH---------F 158 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~-------~~-gd~Vi~~~~~y~~~~~~~~~---------~ 158 (447)
++...+|.++|+++.+ .+.++|++||+||+..|++... ++ ..+||.....||+....... +
T Consensus 110 ~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~ 189 (473)
T 4e3q_A 110 SDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVF 189 (473)
T ss_dssp EHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGG
T ss_pred CHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccccccc
Confidence 4445678888888875 4679999999999999998542 12 25789999998874332211 1
Q ss_pred cCcccCeeEEEeCCC------------------CHHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHHH
Q 013210 159 FPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 159 ~~~~~g~~~~~v~~~------------------d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la~ 213 (447)
.+...+ ...++.. ..+++++.+. .+++.+|++|.++...|.+.| +++|.++|+
T Consensus 190 ~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~ 267 (473)
T 4e3q_A 190 GLPLPG--FVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILR 267 (473)
T ss_dssp TCSCTT--EEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred CCCCCc--ccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhc
Confidence 111112 2222221 1234455442 246789999999999998865 899999999
Q ss_pred hcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh------hhhhhc
Q 013210 214 DKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ------GALMLL 280 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~------~~~~~~ 280 (447)
+||+++|+||+++++... ......|+++ ++|.+++.+.++ |+++.++++.+.+..... +..+..
T Consensus 268 ~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~~Pl-~av~~~~~i~~~~~~~~~~~~~~~hg~T~~ 344 (473)
T 4e3q_A 268 KYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGFFPM-GAVILGPELSKRLETAIEAIEEFPHGFTAS 344 (473)
T ss_dssp HTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred ccceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCCCCc-ccccccHHHHHHhccccccccccccCCCCC
Confidence 999999999999776321 1122467776 889999766788 888899999888764311 122344
Q ss_pred CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-
Q 013210 281 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 359 (447)
Q Consensus 281 g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~- 359 (447)
|++++..++.+.+..++. ....++..+..++|.+.|+++.. .|.+. +..|.|.++.+++...
T Consensus 345 Gnpla~Aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~---~~~v~-------------~vRG~Gl~~gielv~~~ 407 (473)
T 4e3q_A 345 GHPVGCAIALKAIDVVMN-EGLAENVRRLAPRFEERLKHIAE---RPNIG-------------EYRGIGFMWALEAVKDK 407 (473)
T ss_dssp TCHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHTT---STTEE-------------EEEEETTEEEEEECSBT
T ss_pred CCcchhhhhhhhhhhhcc-ccHHHHHHHHHHHHHHHHHHHhc---CCCee-------------EEeecceEEEEEEecCc
Confidence 444444444444332211 11334555666777777765421 01110 1226888999998411
Q ss_pred ----------HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---CCCHH
Q 013210 360 ----------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGTLD 426 (447)
Q Consensus 360 ----------~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~~~~~ 426 (447)
.....+...+.. .|++....| +.|||+..+ .++++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~---~Gll~~~~g-----------------------------~~i~l~PPL~it~~eid 455 (473)
T 4e3q_A 408 ASKTPFDGNLSVSERIANTCTD---LGLICRPLG-----------------------------QSVVLCPPFILTEAQMD 455 (473)
T ss_dssp TTTBCCCGGGCHHHHHHHHHHH---TTEECEEET-----------------------------TEEEECCCTTCCHHHHH
T ss_pred cccccccccHHHHHHHHHHHHH---CCcEEEecC-----------------------------CEEEEeCCCCCCHHHHH
Confidence 124556666654 344332333 335554331 46677
Q ss_pred HHHHHHHHHHHHhh
Q 013210 427 QRWSQFEKALSRMQ 440 (447)
Q Consensus 427 ~~i~~l~~al~~~~ 440 (447)
+.++.|.++|+++.
T Consensus 456 ~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 456 EMFDKLEKALDKVF 469 (473)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888887764
No 233
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.67 E-value=7.4e-15 Score=144.05 Aligned_cols=193 Identities=11% Similarity=0.105 Sum_probs=134.9
Q ss_pred eEEEeCChHHHHHHHHHHhcCC----CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--------CHHHHHHhhc
Q 013210 116 AAYCTASGMSAISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIV 183 (447)
Q Consensus 116 ~~~~tsggt~A~~~al~~l~~~----gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~i~ 183 (447)
..++++|+|.++.+++.+.+++ +++||++...|.++...+. ..|++++++++. |+++++++|+
T Consensus 136 ~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAli-----L~Gl~Pv~V~p~~d~~~~~id~e~le~aI~ 210 (501)
T 3hl2_A 136 NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI-----TAGFEPVVIENVLEGDELRTDLKAVEAKVQ 210 (501)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEEECEEEETTEEEECHHHHHHHHH
T ss_pred cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHH-----HcCCeEEEEeeeecccccCCCHHHHHHHHH
Confidence 4788999998888887777664 4999999999999988873 368888887652 8999999995
Q ss_pred cC--Cce-EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCC------CccCCC-CeEEEeCCCccccCCC
Q 013210 184 QG--RTK-VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL------SPARLG-ADVVVHSISKFISGGA 252 (447)
Q Consensus 184 ~~--~t~-lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~------~~~~~g-~di~~~S~sK~~g~~g 252 (447)
+. +.. +|+.++++|..+.+.|+++|+++|++||+++|+|++| ..+.+ ...++| +|+++.|.||.+-.+
T Consensus 211 e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvp- 289 (501)
T 3hl2_A 211 ELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP- 289 (501)
T ss_dssp HHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCC-
T ss_pred hcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceee-
Confidence 32 233 3444444554557789999999999999999999999 44422 122347 999999999999766
Q ss_pred CeeEEEEE--cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 253 DIIAGAVC--GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 253 ~~igG~l~--~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+||.++ .++++++.+...-.+ +. +.......++.+. +.+.+.+.+++..++.++|.+.|+++
T Consensus 290 --IGG~ii~~~d~e~l~~~~~~yPG--r~--S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l 355 (501)
T 3hl2_A 290 --VGGAIIAGFNDSFIQEISKMYPG--RA--SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355 (501)
T ss_dssp --SSCEEEEESCHHHHHHHHHTSCS--CB--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCceEEEeCCHHHHHHHHHhCCC--CC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345443 466777766432211 01 1122223444333 33446677788888899999998774
No 234
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.66 E-value=6e-15 Score=144.01 Aligned_cols=286 Identities=14% Similarity=0.144 Sum_probs=175.8
Q ss_pred ccccccccccCCH-HHHHHhhcCCCCC--CCCCccccCCCCchHHH-HHHHHHHHhCCCeE-----EEeCChHHHHHHHH
Q 013210 61 SIEASATFTVMEP-ETMRRMFAGELGP--DRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-----YCTASGMSAISSVL 131 (447)
Q Consensus 61 pi~~att~~~~~~-~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~~-----~~tsggt~A~~~al 131 (447)
.+.+|-.|+.+.+ +.+-..+.++|.- |...|+-|-..-..++. +.++..+++|++.. +=--||+.||.+++
T Consensus 58 eLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy 137 (490)
T 3ou5_A 58 ELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVY 137 (490)
T ss_dssp ECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHH
T ss_pred eEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHH
Confidence 4667888887777 6665667776632 22222222221223333 34456678898764 33469999999999
Q ss_pred HHhcCCCCeEEEeCCCchhHHHHH--HhhcC-cccCe--eEEEeCC--C----CHHHHHHhhccCCceEEEEEcCCCCCc
Q 013210 132 MQLCSSGGHVVAARTLYGGTHALL--THFFP-RACNI--TTTFVDI--S----DHEMVNSAIVQGRTKVLYFESISNPTL 200 (447)
Q Consensus 132 ~~l~~~gd~Vi~~~~~y~~~~~~~--~~~~~-~~~g~--~~~~v~~--~----d~~~l~~~i~~~~t~lV~i~~~~NptG 200 (447)
.++++|||+|+..+..+++....- ....+ ...|. +...+.+ . |.+++++..+..++++|++-.-.+|
T Consensus 138 ~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~-- 215 (490)
T 3ou5_A 138 TALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA-- 215 (490)
T ss_dssp HHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCC--
T ss_pred HHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccCc--
Confidence 999999999999998887654321 00000 00122 1221211 1 8899998776678999998654444
Q ss_pred cccCHHHHHHHHHhcCCEEEEeCCC-C-----CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-----------
Q 013210 201 AVANIPELSRLAHDKGVTVVVDNTF-S-----PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA----------- 263 (447)
Q Consensus 201 ~v~~l~~I~~la~~~gi~livD~~~-~-----~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~----------- 263 (447)
...|.+++.++|++.|+++++|.+| . +...+|... +|+++.|.||.+.|| | ||++..++
T Consensus 216 r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLrGP--r-GG~Il~~~~~~~~~~k~~~ 291 (490)
T 3ou5_A 216 RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGA--R-SGLIFYRKGVKAVDPKTGR 291 (490)
T ss_dssp SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTCSC--S-CEEEEEECSEEEECC--CC
T ss_pred cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ceEEeccccccccCC--C-ceEEEeccccccccccccc
Confidence 5779999999999999999999998 3 345577776 899999999999877 3 58887654
Q ss_pred ----HHHHHHHHHhhhhhhhcCCCccHHHHHHH--HccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhH
Q 013210 264 ----NLVNSMMDLHQGALMLLGPTMNPKVAFEL--SERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 336 (447)
Q Consensus 264 ----~~~~~l~~~~~~~~~~~g~~~~~~~a~~~--~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~ 336 (447)
++.+++...-.. +...|+-+...+|.+. ...+ +.+....++..++++.|++.|.+.|+++..-+...
T Consensus 292 ~~~~~~~kkin~aVFP-g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdn----- 365 (490)
T 3ou5_A 292 EIPYTFEDRINFAVFP-SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDN----- 365 (490)
T ss_dssp EEECCCHHHHHHHHTT-TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS-----
T ss_pred hhHHHHHHHHHhhcCc-cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCc-----
Confidence 455666553321 1234444444444332 1122 34667778889999999999999999877543222
Q ss_pred HHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013210 337 LLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 371 (447)
Q Consensus 337 l~~~~~~~~~g~g~~~~~~l~----~~~~~~~l~~~l~~ 371 (447)
.++.+.+. +...++..++...+
T Consensus 366 -------------HlvLvDl~~~g~tG~~ae~~Le~agI 391 (490)
T 3ou5_A 366 -------------HLVLVDLRPKGLDGARAERVLELVSI 391 (490)
T ss_dssp -------------SEEEEECGGGTCCHHHHHHHHHHTTE
T ss_pred -------------eEEEEeccccCCCHHHHHHHHHHcCc
Confidence 27777774 34456666666553
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.64 E-value=1.7e-14 Score=143.20 Aligned_cols=209 Identities=11% Similarity=0.091 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHhcCC----CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC--
Q 013210 102 LNLSRQMAALEGTEA---AYCTASGMSAISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-- 172 (447)
Q Consensus 102 ~~l~~~ia~l~g~~~---~~~tsggt~A~~~al~~l~~~----gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-- 172 (447)
+.+...+.+++|.+. .++++|+|.++++++.+.+++ ++.|+++...|.++...+. ..|+.+++++.
T Consensus 101 ~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~-----l~Gl~p~~v~~~~ 175 (450)
T 3bc8_A 101 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV-----TAGFEPVVIENVL 175 (450)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEE
T ss_pred HHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHH-----HcCCeeEEEEeee
Confidence 456667777778654 489999985555555555443 7899999999999988873 36877777765
Q ss_pred -C-----CHHHHHHhhccC--CceEEEEEcC-CCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCC------ccCC-
Q 013210 173 -S-----DHEMVNSAIVQG--RTKVLYFESI-SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS------PARL- 235 (447)
Q Consensus 173 -~-----d~~~l~~~i~~~--~t~lV~i~~~-~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~------~~~~- 235 (447)
+ |+++|+++|++. +..++++.+| ++.+|.+.|+++|+++|++||+++|+|++|+. +.+. ..+.
T Consensus 176 ~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~ 255 (450)
T 3bc8_A 176 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255 (450)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred cCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence 2 899999999432 2344444444 45567899999999999999999999999943 3221 1122
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEE-cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALI 312 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~ 312 (447)
++|+++.|.||++..+-. |+++. .+++.++.+..... ...++.+....+..+. +.+.+.+.+++..+++++
T Consensus 256 ~AD~~v~S~HK~l~a~~~--~~~l~~rd~~~~~~~~~~~~----g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~ 329 (450)
T 3bc8_A 256 RIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYP----GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVY 329 (450)
T ss_dssp CCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSC----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCccCCCchhc--cEEEEecCHHHHHHHHHHhh----cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999987643 25554 46666665543221 0011111233333322 223344455566777888
Q ss_pred HHHHHHhCC
Q 013210 313 FARRMKKLG 321 (447)
Q Consensus 313 l~~~L~~~~ 321 (447)
+++.|++++
T Consensus 330 l~~~l~~~~ 338 (450)
T 3bc8_A 330 LSTQLKKLA 338 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 888886653
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.62 E-value=3.9e-15 Score=159.96 Aligned_cols=289 Identities=13% Similarity=0.135 Sum_probs=169.7
Q ss_pred CCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc-----CC------------CCeEEEeCCCchhH-HHHH
Q 013210 97 FNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC-----SS------------GGHVVAARTLYGGT-HALL 155 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~-----~~------------gd~Vi~~~~~y~~~-~~~~ 155 (447)
.++...+|.++|+++.+ .+.++|++||++||..|++... .. ..+||.....||+. ...+
T Consensus 422 ~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gal 501 (831)
T 4a0g_A 422 VYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAM 501 (831)
T ss_dssp ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeee
Confidence 45666789999999987 4689999999999999997652 11 23788888888764 3333
Q ss_pred HhhcC---------ccc-Cee---------------EEEeCC------------CC------------------HHHHHH
Q 013210 156 THFFP---------RAC-NIT---------------TTFVDI------------SD------------------HEMVNS 180 (447)
Q Consensus 156 ~~~~~---------~~~-g~~---------------~~~v~~------------~d------------------~~~l~~ 180 (447)
..... .+. +.. ...++. .+ .+.|++
T Consensus 502 s~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 581 (831)
T 4a0g_A 502 EAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSK 581 (831)
T ss_dssp HTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred eccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHH
Confidence 21000 000 100 011110 12 256777
Q ss_pred hhc-------cCCceEEEEEcC-CCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c--CCCCeEEE
Q 013210 181 AIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A--RLGADVVV 241 (447)
Q Consensus 181 ~i~-------~~~t~lV~i~~~-~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-----~--~~g~di~~ 241 (447)
.++ .+++++|++|.+ ++..|.+.+ +++|.++|++||+++|+||+++++.... . ....|++
T Consensus 582 ~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii- 660 (831)
T 4a0g_A 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA- 660 (831)
T ss_dssp HC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE-
T ss_pred HHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEE-
Confidence 663 245789999997 899898875 8999999999999999999997653211 1 2235666
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhh-----hhhhhcCCCccHHHHHHHHccCC--cHHHHHHH----HHH-H
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIP--HLGLRMKE----HCH-R 309 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-----~~~~~~g~~~~~~~a~~~~~~~~--~l~~~~~~----~~~-~ 309 (447)
+++|.+++...++ |++++++++++.+..... ...++.|++++..++.+.+..++ .+.+++++ +.+ .
T Consensus 661 -tlsK~L~gG~~Pl-gav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l 738 (831)
T 4a0g_A 661 -CFAKLLTGGMVPL-AVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELW 738 (831)
T ss_dssp -EECGGGGTTSSCC-EEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCS
T ss_pred -EEecccccCccCc-EEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4899999632688 899999999887753210 11223333333333333332211 11111111 110 1
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------HHHHHHHHHhhccccccccccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~~~~~l~~~l~~~~~~g~~~vs 381 (447)
.+.+.+.+++++... ...|.|.++.+++... ..+..+...+... |++...
T Consensus 739 ~~~l~~~l~~~~~v~-------------------~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~---Gv~v~p 796 (831)
T 4a0g_A 739 DEELVQQISSHSAVQ-------------------RVVVIGTLFALELKADASNSGYASLYAKSLLIMLRED---GIFTRP 796 (831)
T ss_dssp CHHHHHHHHHSTTEE-------------------EEEEETTEEEEEEC---------CHHHHHHHHHHHHT---TEECCC
T ss_pred HHHHHHHHhhCCCce-------------------eEeecccEEEEEEecCccccccchHHHHHHHHHHHHC---CcEEEe
Confidence 123444555554311 1115788999998632 2355666666652 322211
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. .+.|||++. ...+++.|+.+.++|++.-
T Consensus 797 ~-----------------------------g~~lrl~pp-~~~t~e~id~~~~~l~~~l 825 (831)
T 4a0g_A 797 L-----------------------------GNVIYLMCG-PCTSPEICRRLLTKLYKRL 825 (831)
T ss_dssp B-----------------------------TTEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred c-----------------------------CCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 1 267999987 6667777777777666543
No 237
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=71.21 E-value=7.1 Score=33.68 Aligned_cols=38 Identities=5% Similarity=0.138 Sum_probs=33.0
Q ss_pred cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEE
Q 013210 184 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 184 ~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~liv 221 (447)
.-.+..|++|-..|+.|....++++.++|++||+.++.
T Consensus 157 Gl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 157 GLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp TSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 34577888888878999999999999999999998774
No 238
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=55.34 E-value=79 Score=28.42 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=54.0
Q ss_pred eEEEeC-ChHHHHHHHHHHhcCCCCeEEEeCCC-c---hhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEE
Q 013210 116 AAYCTA-SGMSAISSVLMQLCSSGGHVVAARTL-Y---GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVL 190 (447)
Q Consensus 116 ~~~~ts-ggt~A~~~al~~l~~~gd~Vi~~~~~-y---~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV 190 (447)
.+++|. +|.-+-..+ ..|++.|.+|++..-. - +.....+..+. . .++++...|..|.+.+.+++ +. ...|
T Consensus 6 ~ilVtGatG~iG~~l~-~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~-~-~~~~~~~~D~~d~~~l~~~~-~~-~d~v 80 (313)
T 1qyd_A 6 RVLIVGGTGYIGKRIV-NASISLGHPTYVLFRPEVVSNIDKVQMLLYFK-Q-LGAKLIEASLDDHQRLVDAL-KQ-VDVV 80 (313)
T ss_dssp CEEEESTTSTTHHHHH-HHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH-T-TTCEEECCCSSCHHHHHHHH-TT-CSEE
T ss_pred EEEEEcCCcHHHHHHH-HHHHhCCCcEEEEECCCcccchhHHHHHHHHH-h-CCeEEEeCCCCCHHHHHHHH-hC-CCEE
Confidence 466664 455444433 4455667666654332 1 11222221121 2 47777777888999999998 43 4555
Q ss_pred EEEcC-CCCCccccCHHHHHHHHHhcC-CE
Q 013210 191 YFESI-SNPTLAVANIPELSRLAHDKG-VT 218 (447)
Q Consensus 191 ~i~~~-~NptG~v~~l~~I~~la~~~g-i~ 218 (447)
+.... .++...+.....+.+.|++.| +-
T Consensus 81 i~~a~~~~~~~~~~~~~~l~~aa~~~g~v~ 110 (313)
T 1qyd_A 81 ISALAGGVLSHHILEQLKLVEAIKEAGNIK 110 (313)
T ss_dssp EECCCCSSSSTTTTTHHHHHHHHHHSCCCS
T ss_pred EECCccccchhhHHHHHHHHHHHHhcCCCc
Confidence 54332 222113445678889999887 53
No 239
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=54.93 E-value=25 Score=30.34 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=31.3
Q ss_pred cCCceEEEEEcC-CCCCccccCHHHHHHHHHhcCCEEEE
Q 013210 184 QGRTKVLYFESI-SNPTLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 184 ~~~t~lV~i~~~-~NptG~v~~l~~I~~la~~~gi~liv 221 (447)
.-.+..|++|-+ .|+.|....++++.++|++||+.++.
T Consensus 156 Gl~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 156 GLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp TSCSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 335677888773 56889999999999999999998874
No 240
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=51.76 E-value=24 Score=30.88 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=30.8
Q ss_pred cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEE
Q 013210 184 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 184 ~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~liv 221 (447)
.-.+..|++|-. |+.|....++++.++|++||+.++.
T Consensus 176 Gl~Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 176 NLVPITTICEMM-GDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp TSCSEEEEEEEB-CTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 345677877776 6779999999999999999998874
No 241
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=50.58 E-value=33 Score=29.81 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEE
Q 013210 185 GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 185 ~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~liv 221 (447)
-.+..|+++-. |+.|.....+++.++|++||+.++.
T Consensus 166 l~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 166 FKPAGVLCELT-NDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp SCSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEEE
Confidence 35677777766 7789999999999999999998874
No 242
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=49.21 E-value=77 Score=23.39 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=55.4
Q ss_pred eEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEc
Q 013210 116 AAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 194 (447)
Q Consensus 116 ~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~ 194 (447)
.++++.+|.-+..++- .+...| .+|++....-. ....+ . . .+......+..+.+.+++.+ . +..+|+...
T Consensus 7 ~v~I~G~G~iG~~~~~-~l~~~g~~~v~~~~r~~~-~~~~~---~-~-~~~~~~~~d~~~~~~~~~~~-~-~~d~vi~~~ 77 (118)
T 3ic5_A 7 NICVVGAGKIGQMIAA-LLKTSSNYSVTVADHDLA-ALAVL---N-R-MGVATKQVDAKDEAGLAKAL-G-GFDAVISAA 77 (118)
T ss_dssp EEEEECCSHHHHHHHH-HHHHCSSEEEEEEESCHH-HHHHH---H-T-TTCEEEECCTTCHHHHHHHT-T-TCSEEEECS
T ss_pred eEEEECCCHHHHHHHH-HHHhCCCceEEEEeCCHH-HHHHH---H-h-CCCcEEEecCCCHHHHHHHH-c-CCCEEEECC
Confidence 4677766776665544 445567 56766655322 22222 1 2 46777777888999999888 3 456666544
Q ss_pred CCCCCccccCHHHHHHHHHhcCCEEE
Q 013210 195 ISNPTLAVANIPELSRLAHDKGVTVV 220 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~gi~li 220 (447)
+. .....+.+.|.+.|+..+
T Consensus 78 ~~------~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 78 PF------FLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp CG------GGHHHHHHHHHHTTCEEE
T ss_pred Cc------hhhHHHHHHHHHhCCCEE
Confidence 32 124678888888888754
No 243
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=48.67 E-value=46 Score=27.32 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=41.8
Q ss_pred HHHHhhcCcccCeeEEEeCCC-CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcC
Q 013210 153 ALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 216 (447)
Q Consensus 153 ~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~g 216 (447)
..+..++.. .|+++.+...+ .++++.+++...++.+|.++.... .....++++.+.+++.+
T Consensus 36 ~~va~~l~~-~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~--~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 36 KVVARALRD-AGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG--AHLHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHHHHHH-TTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeech--hhHHHHHHHHHHHHhcC
Confidence 333344544 79999987764 788888777567788888766542 34556788888887754
No 244
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=40.93 E-value=1e+02 Score=27.79 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=56.4
Q ss_pred HHHHHhCCCeEEEeCChHHHHHHHHHHhcCCC--CeEEEe--CCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhh
Q 013210 107 QMAALEGTEAAYCTASGMSAISSVLMQLCSSG--GHVVAA--RTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI 182 (447)
Q Consensus 107 ~ia~l~g~~~~~~tsggt~A~~~al~~l~~~g--d~Vi~~--~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i 182 (447)
.-++++.....++|-+.+......++.+...| -+|++. .|.+.+ ......+ .. .|+++..+...-. -..+
T Consensus 102 ~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG-~~~a~~L-~~-~gI~vtli~dsa~---~~~m 175 (276)
T 1vb5_A 102 IGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEG-LHLAREL-EF-SGIEFEVITDAQM---GLFC 175 (276)
T ss_dssp HHHHHCCTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHH-HHHHHHH-HH-TTCCEEEECGGGH---HHHH
T ss_pred HHHHHccCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhh-HHHHHHH-HH-CCCCEEEEcHHHH---HHHH
Confidence 33444444456665433333334455444434 367773 476666 3333233 23 5899888762222 2234
Q ss_pred ccCCceEEEEE--cCCCCCcccc-C--HHHHHHHHHhcCCEEEE
Q 013210 183 VQGRTKVLYFE--SISNPTLAVA-N--IPELSRLAHDKGVTVVV 221 (447)
Q Consensus 183 ~~~~t~lV~i~--~~~NptG~v~-~--l~~I~~la~~~gi~liv 221 (447)
. +...|++- .+. ..|.+. . --.++..|+++++.+++
T Consensus 176 -~-~vd~vivGAd~i~-~nG~v~nkiGt~~iA~~A~~~~vp~~V 216 (276)
T 1vb5_A 176 -R-EASIAIVGADMIT-KDGYVVNKAGTYLLALACHENAIPFYV 216 (276)
T ss_dssp -T-TCSEEEECCSEEC-TTSCEEEETTHHHHHHHHHHTTCCEEE
T ss_pred -c-cCCEEEEcccEEe-cCCCEeechhHHHHHHHHHHcCCCEEE
Confidence 2 56666663 232 334332 2 34778889999988776
No 245
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=40.73 E-value=1.4e+02 Score=24.34 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCC--EEEEeCC
Q 013210 184 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGV--TVVVDNT 224 (447)
Q Consensus 184 ~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi--~livD~~ 224 (447)
+++.-+|.+. -.|.-.++-++++.++++|+ +.|.|..
T Consensus 95 ~~~d~vI~iS----~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 133 (183)
T 2xhz_A 95 TPQDVVIAIS----NSGESSEITALIPVLKRLHVPLICITGRP 133 (183)
T ss_dssp CTTCEEEEEC----SSSCCHHHHHHHHHHHTTTCCEEEEESCT
T ss_pred CCCCEEEEEe----CCCCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3444444442 24666677888889998875 4456653
No 246
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=39.87 E-value=86 Score=28.32 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=53.0
Q ss_pred eEEEeC-ChHHHHHHHHHHhcCCCCeEEE-eCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEE
Q 013210 116 AAYCTA-SGMSAISSVLMQLCSSGGHVVA-ARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE 193 (447)
Q Consensus 116 ~~~~ts-ggt~A~~~al~~l~~~gd~Vi~-~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~ 193 (447)
.+++|. +|.-+-..+ ..|++.|.+|++ ....- .....+..+. . .|+++...|..|.+.+.+++ +. ...|+..
T Consensus 13 ~ilVtGatG~iG~~l~-~~L~~~g~~V~~l~R~~~-~~~~~~~~l~-~-~~v~~v~~Dl~d~~~l~~a~-~~-~d~vi~~ 86 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMV-KGSLKLGHPTYVFTRPNS-SKTTLLDEFQ-S-LGAIIVKGELDEHEKLVELM-KK-VDVVISA 86 (318)
T ss_dssp CEEEETTTSTTHHHHH-HHHHHTTCCEEEEECTTC-SCHHHHHHHH-H-TTCEEEECCTTCHHHHHHHH-TT-CSEEEEC
T ss_pred eEEEECCCchHHHHHH-HHHHHCCCcEEEEECCCC-chhhHHHHhh-c-CCCEEEEecCCCHHHHHHHH-cC-CCEEEEC
Confidence 466665 455554443 445556766554 33221 1111121111 2 47788888888999999998 43 4555543
Q ss_pred cCCCCCccccCHHHHHHHHHhcC-CEEE
Q 013210 194 SISNPTLAVANIPELSRLAHDKG-VTVV 220 (447)
Q Consensus 194 ~~~NptG~v~~l~~I~~la~~~g-i~li 220 (447)
... . .+.....+.+.|++.| +--+
T Consensus 87 a~~--~-~~~~~~~l~~aa~~~g~v~~~ 111 (318)
T 2r6j_A 87 LAF--P-QILDQFKILEAIKVAGNIKRF 111 (318)
T ss_dssp CCG--G-GSTTHHHHHHHHHHHCCCCEE
T ss_pred Cch--h-hhHHHHHHHHHHHhcCCCCEE
Confidence 221 1 1344678888888887 5433
No 247
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=37.29 E-value=16 Score=35.74 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=50.4
Q ss_pred CCCeEEEeCCCch--hHHHHHHhhcCcccCeeEEEeCCCC--HH---HHHHhhccCCceEEEEEcCCCCCccccCHHHHH
Q 013210 137 SGGHVVAARTLYG--GTHALLTHFFPRACNITTTFVDISD--HE---MVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209 (447)
Q Consensus 137 ~gd~Vi~~~~~y~--~~~~~~~~~~~~~~g~~~~~v~~~d--~~---~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~ 209 (447)
+|+.+|+--.++. ....-+..++.. .|+.-+++++.. .. .-...-..-.+.= + .+++..|+..++++++
T Consensus 8 ~g~~~i~~~f~W~w~~ia~e~~~yl~~-~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~d-y--~i~~~~Gt~~df~~lv 83 (496)
T 4gqr_A 8 QGRTSIVHLFEWRWVDIALECERYLAP-KGFGGVQVSPPNENVAIYNPFRPWWERYQPVS-Y--KLCTRSGNEDEFRNMV 83 (496)
T ss_dssp TTCCEEEEETTCCHHHHHHHHHHTTTT-TTCCEEEECCCSCBBCCTTTTSCGGGGGSBSC-S--CSCBTTBCHHHHHHHH
T ss_pred CCCcEEEEecCCCHHHHHHHHHHHHHH-hCCCEEEeCccccCccCCCCCCCcccccCccC-c--eeCCCCCCHHHHHHHH
Confidence 4666776665553 222223345665 788888776531 00 0000000001100 1 3566788889999999
Q ss_pred HHHHhcCCEEEEeCCC
Q 013210 210 RLAHDKGVTVVVDNTF 225 (447)
Q Consensus 210 ~la~~~gi~livD~~~ 225 (447)
+-||++|+.||+|-|+
T Consensus 84 ~~aH~~Gi~VilD~V~ 99 (496)
T 4gqr_A 84 TRCNNVGVRIYVDAVI 99 (496)
T ss_dssp HHHHHTTCEEEEEECC
T ss_pred HHHHHCCCEEEEEEcc
Confidence 9999999999999997
No 248
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=36.62 E-value=2.1e+02 Score=26.31 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=56.4
Q ss_pred CCeEEEeCChHHHHHHHHHHhcCCCC--eEEEeC--CCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceE
Q 013210 114 TEAAYCTASGMSAISSVLMQLCSSGG--HVVAAR--TLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKV 189 (447)
Q Consensus 114 ~~~~~~tsggt~A~~~al~~l~~~gd--~Vi~~~--~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~l 189 (447)
....++|-+.+......|....+.|. +|++.+ |.+.+..- + ..+.. .|++++.+.-.- +-..+ + ++..
T Consensus 121 ~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~l-a-~~L~~-~gI~vtli~Dsa---~~~~m-~-~vd~ 192 (315)
T 3ecs_A 121 DGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKM-A-KALCH-LNVPVTVVLDAA---VGYIM-E-KADL 192 (315)
T ss_dssp TTEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHH-H-HHHHT-TTCCEEEECGGG---HHHHG-G-GCSE
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecCCCcchHHHH-H-HHHHH-cCCCEEEEehhH---HHHHH-H-hCCE
Confidence 34567776665555555655555554 566544 55555543 3 23333 699998875322 33334 2 4556
Q ss_pred EEEEcC-CCCCccccC---HHHHHHHHHhcCCEEEEe
Q 013210 190 LYFESI-SNPTLAVAN---IPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 190 V~i~~~-~NptG~v~~---l~~I~~la~~~gi~livD 222 (447)
|++-.- --..|.+.. --.++-+|+.+|++|++=
T Consensus 193 VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~ 229 (315)
T 3ecs_A 193 VIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVV 229 (315)
T ss_dssp EEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred EEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEE
Confidence 665321 123344432 246778899999988763
No 249
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=35.95 E-value=1.4e+02 Score=26.11 Aligned_cols=92 Identities=22% Similarity=0.170 Sum_probs=46.8
Q ss_pred EEEeC-ChHHHHHHHHHHhcCC--CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEE
Q 013210 117 AYCTA-SGMSAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE 193 (447)
Q Consensus 117 ~~~ts-ggt~A~~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~ 193 (447)
+++|. +|.-+-..+ ..|++. |.+|++..-.-....... . .++++...|..|.+.+++++ + ....|+..
T Consensus 2 ilVtGatG~iG~~l~-~~L~~~~~g~~V~~~~r~~~~~~~~~-----~-~~~~~~~~D~~d~~~~~~~~-~-~~d~vi~~ 72 (286)
T 2zcu_A 2 IAITGATGQLGHYVI-ESLMKTVPASQIVAIVRNPAKAQALA-----A-QGITVRQADYGDEAALTSAL-Q-GVEKLLLI 72 (286)
T ss_dssp EEEESTTSHHHHHHH-HHHTTTSCGGGEEEEESCTTTCHHHH-----H-TTCEEEECCTTCHHHHHHHT-T-TCSEEEEC
T ss_pred EEEEcCCchHHHHHH-HHHHhhCCCceEEEEEcChHhhhhhh-----c-CCCeEEEcCCCCHHHHHHHH-h-CCCEEEEe
Confidence 44554 354444433 445555 666655432211111111 1 36677777888999999988 4 34555543
Q ss_pred cCCCCCccccCHHHHHHHHHhcCC
Q 013210 194 SISNPTLAVANIPELSRLAHDKGV 217 (447)
Q Consensus 194 ~~~NptG~v~~l~~I~~la~~~gi 217 (447)
....+...+.-...+.+.|++.++
T Consensus 73 a~~~~~~~~~~~~~l~~a~~~~~~ 96 (286)
T 2zcu_A 73 SSSEVGQRAPQHRNVINAAKAAGV 96 (286)
T ss_dssp C--------CHHHHHHHHHHHHTC
T ss_pred CCCCchHHHHHHHHHHHHHHHcCC
Confidence 322221223335677888887764
No 250
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=35.67 E-value=63 Score=26.19 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=38.5
Q ss_pred CHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHH-HHHHhcCCE-EEEeCCCCC
Q 013210 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELS-RLAHDKGVT-VVVDNTFSP 227 (447)
Q Consensus 174 d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~-~la~~~gi~-livD~~~~~ 227 (447)
+.+.|.+.+++.++..|+|..|-|..|+..+ .+..+ .++++.++. +.+||.++.
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts 102 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTT 102 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCH
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCCH
Confidence 6888999886678899999999888887754 23334 444455764 557998743
No 251
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=35.25 E-value=57 Score=28.60 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=29.8
Q ss_pred cCCceEEEEEcCCCC-----------CccccCHHHHHHHHHhcCCEEEE
Q 013210 184 QGRTKVLYFESISNP-----------TLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 184 ~~~t~lV~i~~~~Np-----------tG~v~~l~~I~~la~~~gi~liv 221 (447)
.-.+..|++|-. |+ .|....++++.++|++||+.++.
T Consensus 165 Gl~PagVicEi~-~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 165 GKRPVAVISEIV-DDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCT 212 (233)
T ss_dssp TCCSBEEEEEBE-ECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEeC-CCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 345677777765 45 79999999999999999998874
No 252
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=35.22 E-value=1.8e+02 Score=27.27 Aligned_cols=89 Identities=16% Similarity=0.105 Sum_probs=48.5
Q ss_pred HHHHHhcCCCC--eEEEeC--CCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcC-CCCCcccc
Q 013210 129 SVLMQLCSSGG--HVVAAR--TLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI-SNPTLAVA 203 (447)
Q Consensus 129 ~al~~l~~~gd--~Vi~~~--~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~-~NptG~v~ 203 (447)
..++...+.|. +|++.+ |.+.+.......+ .+ .|++++.+.-.-... .+++.++..|++-.- --..|.+.
T Consensus 171 ~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL-~~-~GI~vtlI~Dsa~~~---~M~~~~Vd~VivGAd~V~aNG~v~ 245 (347)
T 1t9k_A 171 GVIRAAVESGKRIRVFADETRPYLQGARLTAWEL-MK-DGIEVYVITDNMAGW---LMKRGLIDAVVVGADRIALNGDTA 245 (347)
T ss_dssp HHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHH-HT-TTCEEEEECGGGHHH---HHHTTCCSEEEECCSEEETTSCEE
T ss_pred HHHHHHHHCCCeEEEEEeCCCCccccHHHHHHHH-Hh-CCCCEEEEehhHHHH---HhhcCCCCEEEECccEEecCCCEE
Confidence 34444444453 566655 6666653333233 33 699999876333333 343445777776311 11224333
Q ss_pred C---HHHHHHHHHhcCCEEEEe
Q 013210 204 N---IPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 204 ~---l~~I~~la~~~gi~livD 222 (447)
. --.++-+||.||++|++=
T Consensus 246 NKiGT~~lAl~Ak~~~vPfyV~ 267 (347)
T 1t9k_A 246 NKIGTYSLAVLAKRNNIPFYVA 267 (347)
T ss_dssp EETTHHHHHHHHHHTTCCEEEE
T ss_pred ecccHHHHHHHHHHcCCCEEEe
Confidence 2 346788899999988874
No 253
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=34.21 E-value=71 Score=23.78 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=35.3
Q ss_pred CHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEE-EEeCCC
Q 013210 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTV-VVDNTF 225 (447)
Q Consensus 174 d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~l-ivD~~~ 225 (447)
+.+.|.+.+++.++..|++-.|-|..|...+ .++.++..++.++.+ .+||-+
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERl 95 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERF 95 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5677777775567889999999998888865 334443333336654 478865
No 254
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=34.07 E-value=1.4e+02 Score=26.58 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=51.9
Q ss_pred eEEEeC-ChHHHHHHHHHHhcCCCCeEEEeC-CCc----hhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceE
Q 013210 116 AAYCTA-SGMSAISSVLMQLCSSGGHVVAAR-TLY----GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKV 189 (447)
Q Consensus 116 ~~~~ts-ggt~A~~~al~~l~~~gd~Vi~~~-~~y----~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~l 189 (447)
.+++|. +|.-+-..+ ..|++.|.+|++.. ..- +.....+..+ .. .|+++...|..|.+.+.+++ +. ...
T Consensus 6 ~ilVtGatG~iG~~l~-~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l-~~-~~v~~v~~D~~d~~~l~~~~-~~-~d~ 80 (308)
T 1qyc_A 6 RILLIGATGYIGRHVA-KASLDLGHPTFLLVRESTASSNSEKAQLLESF-KA-SGANIVHGSIDDHASLVEAV-KN-VDV 80 (308)
T ss_dssp CEEEESTTSTTHHHHH-HHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH-HT-TTCEEECCCTTCHHHHHHHH-HT-CSE
T ss_pred EEEEEcCCcHHHHHHH-HHHHhCCCCEEEEECCcccccCHHHHHHHHHH-Hh-CCCEEEEeccCCHHHHHHHH-cC-CCE
Confidence 466665 355554443 44556676665533 221 1122222122 12 47788777888999999998 43 445
Q ss_pred EEEEcCCCCCccccCHHHHHHHHHhcC-CE
Q 013210 190 LYFESISNPTLAVANIPELSRLAHDKG-VT 218 (447)
Q Consensus 190 V~i~~~~NptG~v~~l~~I~~la~~~g-i~ 218 (447)
|+...... .+.....+.+.|++.| +-
T Consensus 81 vi~~a~~~---~~~~~~~l~~aa~~~g~v~ 107 (308)
T 1qyc_A 81 VISTVGSL---QIESQVNIIKAIKEVGTVK 107 (308)
T ss_dssp EEECCCGG---GSGGGHHHHHHHHHHCCCS
T ss_pred EEECCcch---hhhhHHHHHHHHHhcCCCc
Confidence 54432211 1334567888888877 53
No 255
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=33.74 E-value=2.2e+02 Score=25.93 Aligned_cols=103 Identities=7% Similarity=0.049 Sum_probs=57.7
Q ss_pred eEEEeCC-hHHHHHHHHHHhcCCCCeEEEe-CCC--chhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEE
Q 013210 116 AAYCTAS-GMSAISSVLMQLCSSGGHVVAA-RTL--YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLY 191 (447)
Q Consensus 116 ~~~~tsg-gt~A~~~al~~l~~~gd~Vi~~-~~~--y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~ 191 (447)
.+++|.+ |.-+-..+ ..|++.|.+|++. ... .+.-...+..+. . .++++...|..|.+++.++++..+...|+
T Consensus 12 ~IlVtGatG~iG~~l~-~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~-~-~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 88 (346)
T 3i6i_A 12 RVLIAGATGFIGQFVA-TASLDAHRPTYILARPGPRSPSKAKIFKALE-D-KGAIIVYGLINEQEAMEKILKEHEIDIVV 88 (346)
T ss_dssp CEEEECTTSHHHHHHH-HHHHHTTCCEEEEECSSCCCHHHHHHHHHHH-H-TTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCcHHHHHHH-HHHHHCCCCEEEEECCCCCChhHHHHHHHHH-h-CCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence 4666654 65554443 4555566655543 322 222222222221 2 47888888888999999999422455555
Q ss_pred EEc-CCCCCccccCHHHHHHHHHhcC-CEEEEeCCC
Q 013210 192 FES-ISNPTLAVANIPELSRLAHDKG-VTVVVDNTF 225 (447)
Q Consensus 192 i~~-~~NptG~v~~l~~I~~la~~~g-i~livD~~~ 225 (447)
... ..| +.....|.+.|++.| +..++=.++
T Consensus 89 ~~a~~~n----~~~~~~l~~aa~~~g~v~~~v~S~~ 120 (346)
T 3i6i_A 89 STVGGES----ILDQIALVKAMKAVGTIKRFLPSEF 120 (346)
T ss_dssp ECCCGGG----GGGHHHHHHHHHHHCCCSEEECSCC
T ss_pred ECCchhh----HHHHHHHHHHHHHcCCceEEeeccc
Confidence 433 223 333468889999888 644432334
No 256
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=33.54 E-value=1.2e+02 Score=24.88 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=23.2
Q ss_pred cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCE--EEEeCC
Q 013210 184 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVT--VVVDNT 224 (447)
Q Consensus 184 ~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~--livD~~ 224 (447)
+++.-+|.+. ..|...++-++++.++++|+. .|.|..
T Consensus 86 ~~~d~~i~iS----~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 124 (187)
T 3sho_A 86 RPTDLMIGVS----VWRYLRDTVAALAGAAERGVPTMALTDSS 124 (187)
T ss_dssp CTTEEEEEEC----CSSCCHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred CCCCEEEEEe----CCCCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3444444442 256667788889999998764 455543
No 257
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=32.45 E-value=3.1e+02 Score=25.44 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=43.1
Q ss_pred CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHH-HHh------hccCCceEEEEEcCCCCCc----------
Q 013210 138 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMV-NSA------IVQGRTKVLYFESISNPTL---------- 200 (447)
Q Consensus 138 gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l-~~~------i~~~~t~lV~i~~~~NptG---------- 200 (447)
|..++..+.++......+..+.-. --++.....++.+++ ... ++..++++|++.+++.-.-
T Consensus 58 g~~vlyId~E~s~~~~ra~~lGvd--~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd 135 (333)
T 3io5_A 58 DAVCLFYDSEFGITPAYLRSMGVD--PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNE 135 (333)
T ss_dssp TCEEEEEESSCCCCHHHHHHTTCC--GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC---------
T ss_pred CceEEEEeccchhhHHHHHHhCCC--HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCcccc
Confidence 666666555543222223222111 012334445566655 322 4456789999998876531
Q ss_pred ----ccc-------CHHHHHHHHHhcCCEEEE
Q 013210 201 ----AVA-------NIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 201 ----~v~-------~l~~I~~la~~~gi~liv 221 (447)
.+. -+.+|..+++++|+.+++
T Consensus 136 ~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 136 KVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 111 144566678999987664
No 258
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=32.32 E-value=1.5e+02 Score=26.71 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=53.0
Q ss_pred eEEEeC-ChHHHHHHHHHHhcCCCCeEEE-eCCC-c---hhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceE
Q 013210 116 AAYCTA-SGMSAISSVLMQLCSSGGHVVA-ARTL-Y---GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKV 189 (447)
Q Consensus 116 ~~~~ts-ggt~A~~~al~~l~~~gd~Vi~-~~~~-y---~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~l 189 (447)
.+++|. +|.-+-.. +..|++.|.+|++ .... - +.....+..+ .. .++++...|..|.+.+.+++ +. ...
T Consensus 6 ~ilVtGatG~iG~~l-~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~-~~-~~v~~v~~D~~d~~~l~~a~-~~-~d~ 80 (321)
T 3c1o_A 6 KIIIYGGTGYIGKFM-VRASLSFSHPTFIYARPLTPDSTPSSVQLREEF-RS-MGVTIIEGEMEEHEKMVSVL-KQ-VDI 80 (321)
T ss_dssp CEEEETTTSTTHHHH-HHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHH-HH-TTCEEEECCTTCHHHHHHHH-TT-CSE
T ss_pred EEEEEcCCchhHHHH-HHHHHhCCCcEEEEECCcccccChHHHHHHHHh-hc-CCcEEEEecCCCHHHHHHHH-cC-CCE
Confidence 356664 35444433 3445556766554 3332 1 1122222111 12 47788888888999999998 43 455
Q ss_pred EEEEcCCCCCccccCHHHHHHHHHhcC-CEEEE
Q 013210 190 LYFESISNPTLAVANIPELSRLAHDKG-VTVVV 221 (447)
Q Consensus 190 V~i~~~~NptG~v~~l~~I~~la~~~g-i~liv 221 (447)
|+..... . .+.-...+.+.|++.| +--++
T Consensus 81 vi~~a~~--~-~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 81 VISALPF--P-MISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp EEECCCG--G-GSGGGHHHHHHHHHHCCCCEEE
T ss_pred EEECCCc--c-chhhHHHHHHHHHHhCCccEEe
Confidence 5543221 1 1344578888888887 63333
No 259
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=31.32 E-value=1.1e+02 Score=26.13 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHhhcCcccCeeEEEeCCC-CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcC----CEEEEe
Q 013210 153 ALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG----VTVVVD 222 (447)
Q Consensus 153 ~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~g----i~livD 222 (447)
..+...+.. .|+++.++..+ ..+++.++++..++.+|.+..-. +.....++++.+.+++.+ +.+++=
T Consensus 106 ~~va~~l~~-~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 106 NLVAMMLES-GGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALL--TTTMMNMKSTIDALIAAGLRDRVKVIVG 177 (210)
T ss_dssp HHHHHHHHH-TTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCS--GGGTHHHHHHHHHHHHTTCGGGCEEEEE
T ss_pred HHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 334344444 79999988765 67888777755677788776543 234556788888887754 555544
No 260
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=30.77 E-value=2.1e+02 Score=25.53 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCEEEEeC
Q 013210 205 IPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 205 l~~I~~la~~~gi~livD~ 223 (447)
+.++.+.++++|+.+++|-
T Consensus 149 ~~~~~~~a~~~~~~v~~D~ 167 (309)
T 3umo_A 149 LTQLISAAQKQGIRCIVDS 167 (309)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEEC
Confidence 6678888889999999995
No 261
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=30.68 E-value=2.1e+02 Score=25.02 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=47.8
Q ss_pred EEEeCC-hHHHHHHHHHHhcCC--CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEE
Q 013210 117 AYCTAS-GMSAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE 193 (447)
Q Consensus 117 ~~~tsg-gt~A~~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~ 193 (447)
+++|.+ |.-+-.. +..|++. |.+|++..-.-....... . .++++...|..|.+.+.+++ + +...|+..
T Consensus 3 ilVtGatG~iG~~l-~~~L~~~~~g~~V~~~~r~~~~~~~l~-----~-~~~~~~~~D~~d~~~l~~~~-~-~~d~vi~~ 73 (287)
T 2jl1_A 3 IAVTGATGQLGGLV-IQHLLKKVPASQIIAIVRNVEKASTLA-----D-QGVEVRHGDYNQPESLQKAF-A-GVSKLLFI 73 (287)
T ss_dssp EEETTTTSHHHHHH-HHHHTTTSCGGGEEEEESCTTTTHHHH-----H-TTCEEEECCTTCHHHHHHHT-T-TCSEEEEC
T ss_pred EEEEcCCchHHHHH-HHHHHHhCCCCeEEEEEcCHHHHhHHh-----h-cCCeEEEeccCCHHHHHHHH-h-cCCEEEEc
Confidence 455543 4444333 3455555 766655432211111111 1 36677777888999999988 4 35555543
Q ss_pred cCCCCCc--cccCHHHHHHHHHhcCC
Q 013210 194 SISNPTL--AVANIPELSRLAHDKGV 217 (447)
Q Consensus 194 ~~~NptG--~v~~l~~I~~la~~~gi 217 (447)
...++.. .+.-...+.+.|++.++
T Consensus 74 a~~~~~~~~n~~~~~~l~~a~~~~~~ 99 (287)
T 2jl1_A 74 SGPHYDNTLLIVQHANVVKAARDAGV 99 (287)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCcCchHHHHHHHHHHHHHHHcCC
Confidence 3322211 11123467778887775
No 262
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=30.64 E-value=90 Score=24.61 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=33.5
Q ss_pred EEEeCCCCHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEE
Q 013210 167 TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 167 ~~~v~~~d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~liv 221 (447)
+..++.+..+.+..++ . .++.+|+++ |...|-+++.++|+++|+.++.
T Consensus 55 l~I~~G~r~~~~l~a~-~~~~~~~iIlt------~g~~~~~~i~~~A~~~~ipvl~ 103 (139)
T 2ioj_A 55 ALVTGGDRSDLLLTAL-EMPNVRCLILT------GNLEPVQLVLTKAEERGVPVIL 103 (139)
T ss_dssp EEEEETTCHHHHHHHT-TCTTEEEEEEE------TTCCCCHHHHHHHHHHTCCEEE
T ss_pred EEEEcCCHHHHHHHHH-hCCCCcEEEEc------CCCCCCHHHHHHHHHCCCeEEE
Confidence 4444455556666777 5 578888874 4445668888999999988774
No 263
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=30.54 E-value=22 Score=34.72 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=27.8
Q ss_pred cCCCCCccccCHHHHHHHHHhcCCEEEEeCCC
Q 013210 194 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 194 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~ 225 (447)
.++...|+..+++++++-||++|+-||+|-|+
T Consensus 56 ~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 87 (448)
T 1g94_A 56 ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLI 87 (448)
T ss_dssp CSCBTTBCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccCCCCCCHHHHHHHHHHHHHCCCEEEEEEee
Confidence 34556788889999999999999999999987
No 264
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=30.19 E-value=91 Score=28.90 Aligned_cols=68 Identities=7% Similarity=0.003 Sum_probs=42.3
Q ss_pred cCCCCeEEEeCCCch------hHHHHHHhhcCcccCeeEEEeCCC-------------CHHHHHHhhccCCceEEEEEcC
Q 013210 135 CSSGGHVVAARTLYG------GTHALLTHFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESI 195 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~------~~~~~~~~~~~~~~g~~~~~v~~~-------------d~~~l~~~i~~~~t~lV~i~~~ 195 (447)
+++||+|-+..|..+ .........+.. .|.+++.-+.- -.++|.+++.++++++|+..--
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTD-MGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHH-TTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHh-CCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 578999988887643 122222334444 68888775431 2467777886788999987654
Q ss_pred CCCCcccc
Q 013210 196 SNPTLAVA 203 (447)
Q Consensus 196 ~NptG~v~ 203 (447)
..-+-.+.
T Consensus 88 G~g~~rlL 95 (327)
T 4h1h_A 88 GFNSNQLL 95 (327)
T ss_dssp CSCGGGGG
T ss_pred chhHHHHh
Confidence 44344443
No 265
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=29.91 E-value=2.6e+02 Score=23.78 Aligned_cols=119 Identities=10% Similarity=0.109 Sum_probs=65.1
Q ss_pred CchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee---EEEeC
Q 013210 98 NPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT---TTFVD 171 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~---~~~v~ 171 (447)
.+....+-..++...+.. .++=..+|+-.....+...+.++.+|+..+..-. ....++..+.+ .|.. +.++.
T Consensus 38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~-~g~~~~~i~~~~ 115 (221)
T 3dr5_A 38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESE-HQRQAKALFRE-AGYSPSRVRFLL 115 (221)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHH-HHHHHHHHHHH-TTCCGGGEEEEC
T ss_pred CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHH-HHHHHHHHHHH-cCCCcCcEEEEE
Confidence 355566667777777776 7776666666555555444555678888877543 33334333333 3433 55554
Q ss_pred CCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh---cCCEEEEeCCC
Q 013210 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD---KGVTVVVDNTF 225 (447)
Q Consensus 172 ~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~---~gi~livD~~~ 225 (447)
. |..++...+....-.+|++... .....+..+.+.+ .|-++++|++.
T Consensus 116 g-da~~~l~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 116 S-RPLDVMSRLANDSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp S-CHHHHGGGSCTTCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred c-CHHHHHHHhcCCCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3 4444332231345678887532 1223333333332 46778888886
No 266
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=29.63 E-value=3.1e+02 Score=24.59 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=42.1
Q ss_pred CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC---C------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHH
Q 013210 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 207 (447)
Q Consensus 137 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~---~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~ 207 (447)
++..++++.+.|.-... + +|++...+.. . ++.+|.+.+++.++++|+++.-.++ +-
T Consensus 178 ~~~~~v~~H~af~Yf~~-------~-yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~ 242 (286)
T 3gi1_A 178 RSKTFVTQHTAFSYLAK-------R-FGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNP-------KI 242 (286)
T ss_dssp SCCEEEEEESCCHHHHH-------H-TTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCT-------HH
T ss_pred CCCEEEEECCchHHHHH-------H-CCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HH
Confidence 46788888776652221 2 5666543321 1 4555666665678899998765544 23
Q ss_pred HHHHHHhcCCEEEE
Q 013210 208 LSRLAHDKGVTVVV 221 (447)
Q Consensus 208 I~~la~~~gi~liv 221 (447)
+..++++.|+.++.
T Consensus 243 ~~~la~~~g~~v~~ 256 (286)
T 3gi1_A 243 AHAIAKSTGAKVKT 256 (286)
T ss_dssp HHHHHHTTTCEEEE
T ss_pred HHHHHHHhCCeEEE
Confidence 34567888887653
No 267
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=29.42 E-value=3e+02 Score=24.46 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=60.3
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeC--CCchhHH-HHHHhh--------cCccc-CeeEEEeCCC-CHHHHHHhhccC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAAR--TLYGGTH-ALLTHF--------FPRAC-NITTTFVDIS-DHEMVNSAIVQG 185 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~--~~y~~~~-~~~~~~--------~~~~~-g~~~~~v~~~-d~~~l~~~i~~~ 185 (447)
+.+..+..+...+........+|++.. .+.|..- ..+..+ +.. . |+++.++-.+ .++++.+++...
T Consensus 101 ~s~~~~~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~-~~G~eVi~LG~~vp~e~iv~aa~e~ 179 (262)
T 1xrs_B 101 SEILSMEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLER-YEMIDAYNLGSQVANEDFIKKAVEL 179 (262)
T ss_dssp -CCCCHHHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGG-CTTEEEEECCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHh-cCCcEEEECCCCCCHHHHHHHHHHc
Confidence 344445555555554443333555432 3334333 333333 444 7 9999887665 778887776567
Q ss_pred CceEEEEEcCCCCCc-cccCHHHHHHHHHhcC----CEEEEeCC
Q 013210 186 RTKVLYFESISNPTL-AVANIPELSRLAHDKG----VTVVVDNT 224 (447)
Q Consensus 186 ~t~lV~i~~~~NptG-~v~~l~~I~~la~~~g----i~livD~~ 224 (447)
+..+|.+.....+.- .+..++++.+.+++.| +.+++=.+
T Consensus 180 ~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 180 EADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp TCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred CCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 788888865543211 3456778888888765 66665443
No 268
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=29.12 E-value=2.2e+02 Score=24.43 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=47.2
Q ss_pred CeEEEeC--CCchhH-HHHHHhhcCcccCeeEEEeCCC-CHHHHHHhhccCCceEEEE--EcCCCCCccccCHHHHHHHH
Q 013210 139 GHVVAAR--TLYGGT-HALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYF--ESISNPTLAVANIPELSRLA 212 (447)
Q Consensus 139 d~Vi~~~--~~y~~~-~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~~~t~lV~i--~~~~NptG~v~~l~~I~~la 212 (447)
.+|++.. .+.|.. ...+...+.. .|+++.++..+ .++++.+++.+.+..+|.+ .... +.....++++.+.+
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~--~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGA-NGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALM--TTSMLGQKDLMDRL 169 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHH-TSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSS--HHHHTHHHHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHH-CCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcc--cCcHHHHHHHHHHH
Confidence 4565543 233333 3333344444 79999987665 7888877665677788877 5543 33455688888888
Q ss_pred HhcC
Q 013210 213 HDKG 216 (447)
Q Consensus 213 ~~~g 216 (447)
++.+
T Consensus 170 ~~~~ 173 (215)
T 3ezx_A 170 NEEK 173 (215)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8764
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=28.89 E-value=4e+02 Score=25.71 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=48.4
Q ss_pred HHhcCCCCeEE-Ee-CCCchhHHHHHHhhcCcccCeeEEEeCC-CCHHHHH-Hhh---ccCCceEEEEEcCCCCCc---c
Q 013210 132 MQLCSSGGHVV-AA-RTLYGGTHALLTHFFPRACNITTTFVDI-SDHEMVN-SAI---VQGRTKVLYFESISNPTL---A 201 (447)
Q Consensus 132 ~~l~~~gd~Vi-~~-~~~y~~~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~-~~i---~~~~t~lV~i~~~~NptG---~ 201 (447)
..+.+.|.+|+ +. ++..++....+..+..+ .|+++...+. .|+.++. +++ ...+..+|+++++..-.- .
T Consensus 122 ~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~-~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~l 200 (443)
T 3dm5_A 122 RYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDR-YHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKAL 200 (443)
T ss_dssp HHHHTTTCCEEEEECCCSSTHHHHHHHHHHGG-GTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHH
T ss_pred HHHHHCCCeEEEEeCCCcchhHHHHHHHHHHh-cCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHH
Confidence 34455676554 33 34445555555444444 6766654332 2544332 222 134578999998742110 1
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCC
Q 013210 202 VANIPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 202 v~~l~~I~~la~~~gi~livD~~~ 225 (447)
...+..+.+..+...+++++|...
T Consensus 201 m~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 201 IEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHHHhhcCceEEEEEeCCC
Confidence 112344444444467899999875
No 270
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=27.82 E-value=84 Score=26.72 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=51.2
Q ss_pred CCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEE--EeCCCCCCCCCccCCCCeEEEeCCCccccC
Q 013210 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV--VDNTFSPLVLSPARLGADVVVHSISKFISG 250 (447)
Q Consensus 173 ~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~li--vD~~~~~~~~~~~~~g~di~~~S~sK~~g~ 250 (447)
.+.++|++++ +.+...|++- .|.+..++++.+.++++|-.++ .|-+. ++ +..+.+++++. +.+++
T Consensus 17 r~~~~l~~al-~s~~~~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~-Gl--s~d~~ai~fL~----~~~~p 83 (192)
T 3kts_A 17 HNQKDMEKIL-ELDLTYMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLVN-GL--KNDDYAIDFLC----TEICP 83 (192)
T ss_dssp SSSHHHHHHT-TSSCCEEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGEE-TC--CCSHHHHHHHH----HTTCC
T ss_pred cCHHHHHHHH-cCCCCEEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCchh-cc--CCcHHHHHHHH----hCCCC
Confidence 4889999999 5556777762 4678899999999999985544 44332 22 22222333333 34443
Q ss_pred CCCeeEEEEEcChHHHHHHHH
Q 013210 251 GADIIAGAVCGPANLVNSMMD 271 (447)
Q Consensus 251 ~g~~igG~l~~~~~~~~~l~~ 271 (447)
- |.+..+...+...++
T Consensus 84 d-----GIIsTk~~~i~~Ak~ 99 (192)
T 3kts_A 84 D-----GIISTRGNAIMKAKQ 99 (192)
T ss_dssp S-----EEEESCHHHHHHHHH
T ss_pred C-----EEEeCcHHHHHHHHH
Confidence 2 667777777766654
No 271
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=27.81 E-value=32 Score=33.81 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=27.4
Q ss_pred CCCCCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
+....|+..+++++++.||++|+-||+|-|..
T Consensus 71 id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 102 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSRNVQVYGDVVLN 102 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 34456888899999999999999999999973
No 272
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=27.57 E-value=2.6e+02 Score=25.58 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=9.1
Q ss_pred CeeEEEeCCCCHHHHHHhh
Q 013210 164 NITTTFVDISDHEMVNSAI 182 (447)
Q Consensus 164 g~~~~~v~~~d~~~l~~~i 182 (447)
+..+..++.++.+++.+.+
T Consensus 206 ~~~~~~~~~~~~~~l~~~l 224 (315)
T 3tnl_A 206 DCKAQLFDIEDHEQLRKEI 224 (315)
T ss_dssp SCEEEEEETTCHHHHHHHH
T ss_pred CCceEEeccchHHHHHhhh
Confidence 3344444444555555544
No 273
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=27.05 E-value=37 Score=24.60 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCEEEEeCC
Q 013210 205 IPELSRLAHDKGVTVVVDNT 224 (447)
Q Consensus 205 l~~I~~la~~~gi~livD~~ 224 (447)
-.+|.++|+++|+.++.|..
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 46899999999999999953
No 274
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=26.94 E-value=35 Score=33.58 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=27.2
Q ss_pred CCCCCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
+....|+..+++++++-||++|+-||+|-|..
T Consensus 73 idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 104 (480)
T 1ud2_A 73 VRTKYGTKAQLERAIGSLKSNDINVYGDVVMN 104 (480)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 33446888899999999999999999999973
No 275
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=26.82 E-value=39 Score=32.76 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=27.2
Q ss_pred CCCCccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013210 196 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 227 (447)
Q Consensus 196 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 227 (447)
+...|+..+++++++-||++|+-||+|-|..+
T Consensus 80 d~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH 111 (435)
T 1mxg_A 80 ETRFGSKEELVRLIQTAHAYGIKVIADVVINH 111 (435)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 34468888999999999999999999998733
No 276
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=26.71 E-value=35 Score=33.58 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=27.3
Q ss_pred CCCCCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
+....|+..+++++++-||++|+-||+|-|..
T Consensus 75 idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 106 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMN 106 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 34446888899999999999999999999973
No 277
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=26.61 E-value=82 Score=22.44 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=31.8
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCC
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 224 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~ 224 (447)
..+..+++++.+.++|++-+-..| .-...|..+|+++++.++.-..
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~----~~~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADP----ILTSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCH----HHHHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCH----HHHHHHHHHHHHcCCCEEEECC
Confidence 355666776778889988543333 2356788899999998876543
No 278
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=26.52 E-value=35 Score=33.93 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCCCCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
+....|+..+++++++.||++|+-||+|-|..
T Consensus 74 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 105 (515)
T 1hvx_A 74 VRTKYGTKAQYLQAIQAAHAAGMQVYADVVFD 105 (515)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 34446888899999999999999999999973
No 279
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.25 E-value=1.2e+02 Score=28.65 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=37.6
Q ss_pred cCCCCeEEEeCCCchhH------HHHHHhhcCcccCeeEEEeCCC-------------CHHHHHHhhccCCceEEEEEcC
Q 013210 135 CSSGGHVVAARTLYGGT------HALLTHFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESI 195 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~------~~~~~~~~~~~~g~~~~~v~~~-------------d~~~l~~~i~~~~t~lV~i~~~ 195 (447)
+++||+|-+..|..+.. .......+.. .|.+++.-+.. -.++|.+++.++++++|++.--
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQR-KGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHH-TTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHh-CCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 45677777766664321 1111223333 57776654321 3567777886678899887654
Q ss_pred CCCCcccc
Q 013210 196 SNPTLAVA 203 (447)
Q Consensus 196 ~NptG~v~ 203 (447)
..-+-.+.
T Consensus 119 Gyga~rlL 126 (371)
T 3tla_A 119 GDNSNSLL 126 (371)
T ss_dssp CSCGGGGG
T ss_pred cccHHHHH
Confidence 43333443
No 280
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=26.17 E-value=40 Score=33.68 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=26.8
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
...|+..+++++++-||++|+-||+|-|+.
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~N 116 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPN 116 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 556888899999999999999999999873
No 281
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=25.48 E-value=36 Score=32.98 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.5
Q ss_pred CCCCccccCHHHHHHHHHhcCCEEEEeCCC
Q 013210 196 SNPTLAVANIPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 196 ~NptG~v~~l~~I~~la~~~gi~livD~~~ 225 (447)
+...|+..+++++++-||++|+-||+|-|.
T Consensus 63 dp~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 92 (441)
T 1lwj_A 63 KAEYGSEREFKEMIEAFHDSGIKVVLDLPI 92 (441)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 344677888999999999999999999886
No 282
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=25.45 E-value=3.7e+02 Score=24.19 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=42.3
Q ss_pred CCCeEEEeC-ChHHHHHHHHHHhcCCCCeEEEeCCC---chhHHHHHHhhcCc--ccCeeEEEeCCCCHHHHHHhhccCC
Q 013210 113 GTEAAYCTA-SGMSAISSVLMQLCSSGGHVVAARTL---YGGTHALLTHFFPR--ACNITTTFVDISDHEMVNSAIVQGR 186 (447)
Q Consensus 113 g~~~~~~ts-ggt~A~~~al~~l~~~gd~Vi~~~~~---y~~~~~~~~~~~~~--~~g~~~~~v~~~d~~~l~~~i~~~~ 186 (447)
....+++|. +|.-+-.++ ..|++.|.+|++..-. .......+...... ..++++...|..|.+.+++++ . +
T Consensus 24 ~~~~vlVtGatG~iG~~l~-~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~-~ 100 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLL-EKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM-K-G 100 (351)
T ss_dssp SCCEEEEETTTSHHHHHHH-HHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT-T-T
T ss_pred CCCeEEEECCCcHHHHHHH-HHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh-c-C
Confidence 345677775 455554443 4566678777664432 12222222111100 025677777888999999988 4 4
Q ss_pred ceEEEEE
Q 013210 187 TKVLYFE 193 (447)
Q Consensus 187 t~lV~i~ 193 (447)
..+|+-.
T Consensus 101 ~d~Vih~ 107 (351)
T 3ruf_A 101 VDHVLHQ 107 (351)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 5555543
No 283
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=25.10 E-value=4.3e+02 Score=24.74 Aligned_cols=112 Identities=9% Similarity=0.037 Sum_probs=58.5
Q ss_pred HHHHHHHhCCCeEEEeC-ChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhc---Cc-ccCeeEEEeCCCCHHHH
Q 013210 105 SRQMAALEGTEAAYCTA-SGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFF---PR-ACNITTTFVDISDHEMV 178 (447)
Q Consensus 105 ~~~ia~l~g~~~~~~ts-ggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~---~~-~~g~~~~~v~~~d~~~l 178 (447)
...+...+....+++|. +|.-+-.+ ...|++.| .+|++....-.........+. +. ..++.+...|..|.+.+
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l-~~~L~~~g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~~~~~Dl~d~~~~ 104 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAV-TKEIFKRNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFALDIGSIEYD 104 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHH-HHHHHTTCCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEECCCTTSHHHH
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHH-HHHHHHCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEEEEEEeCCCHHHH
Confidence 44555555555677776 44444444 34567778 677776654333333222111 10 02345555566688877
Q ss_pred HHhhccCCceEEEEEcCCCCCccccC--------------HHHHHHHHHhcCC
Q 013210 179 NSAIVQGRTKVLYFESISNPTLAVAN--------------IPELSRLAHDKGV 217 (447)
Q Consensus 179 ~~~i~~~~t~lV~i~~~~NptG~v~~--------------l~~I~~la~~~gi 217 (447)
+..++..+...|+-...........+ ...+++.|+++|+
T Consensus 105 ~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~gv 157 (399)
T 3nzo_A 105 AFIKADGQYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGA 157 (399)
T ss_dssp HHHHHCCCCSEEEECCCCCCGGGGSSHHHHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCEEEECCCcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77664456666665433221111112 2257777887774
No 284
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=24.61 E-value=1.6e+02 Score=26.61 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=40.4
Q ss_pred eEEEeC-ChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCc-ccCeeEEEeCCCCHHHHHHhhccCCceEEEEE
Q 013210 116 AAYCTA-SGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR-ACNITTTFVDISDHEMVNSAIVQGRTKVLYFE 193 (447)
Q Consensus 116 ~~~~ts-ggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~ 193 (447)
.+++|. +|.-+-.+ +..|++.|.+|++..-.-............. ..++.+...|..|.+.++++++..+...|+-.
T Consensus 7 ~vlVTGatG~iG~~l-~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 85 (341)
T 3enk_A 7 TILVTGGAGYIGSHT-AVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHF 85 (341)
T ss_dssp EEEEETTTSHHHHHH-HHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred EEEEecCCcHHHHHH-HHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEEC
Confidence 466664 33333333 3456677888877653322222222111100 02455556677799999998843355666543
Q ss_pred c
Q 013210 194 S 194 (447)
Q Consensus 194 ~ 194 (447)
.
T Consensus 86 A 86 (341)
T 3enk_A 86 A 86 (341)
T ss_dssp C
T ss_pred c
Confidence 3
No 285
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=24.59 E-value=35 Score=34.02 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.4
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCC
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~ 225 (447)
...|+..+++++++-||++|+-||+|-|+
T Consensus 74 p~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 102 (549)
T 4aie_A 74 PQYGTMADMDELISKAKEHHIKIVMDLVV 102 (549)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 34577788999999999999999999987
No 286
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=24.55 E-value=3.2e+02 Score=23.05 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=39.0
Q ss_pred EEEeCChHHHHH-HHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee--EEEeCCCCHHHHHHhhcc-----CCce
Q 013210 117 AYCTASGMSAIS-SVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT--TTFVDISDHEMVNSAIVQ-----GRTK 188 (447)
Q Consensus 117 ~~~tsggt~A~~-~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~--~~~v~~~d~~~l~~~i~~-----~~t~ 188 (447)
+++|.++ ..+= .+.+.+.+.|-+|++.................. .+.+ +...|..|.++++++++. ++..
T Consensus 5 vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 82 (235)
T 3l77_A 5 AVITGAS-RGIGEAIARALARDGYALALGARSVDRLEKIAHELMQE-QGVEVFYHHLDVSKAESVEEFSKKVLERFGDVD 82 (235)
T ss_dssp EEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTCHHHHHHHCC-HHHHHSSCS
T ss_pred EEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-cCCeEEEEEeccCCHHHHHHHHHHHHHhcCCCC
Confidence 5555443 3333 333556777888877665433333332222111 2334 444566699988887621 2455
Q ss_pred EEEEEc
Q 013210 189 VLYFES 194 (447)
Q Consensus 189 lV~i~~ 194 (447)
+++...
T Consensus 83 ~li~~A 88 (235)
T 3l77_A 83 VVVANA 88 (235)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 655443
No 287
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=24.50 E-value=42 Score=33.02 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.7
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~ 225 (447)
..|+..+++++++.||++|+-||+|-|+
T Consensus 77 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 104 (488)
T 1wza_A 77 DYGTLEDFHKLVEAAHQRGIKVIIDLPI 104 (488)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3577788999999999999999999987
No 288
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=24.38 E-value=43 Score=32.35 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=27.6
Q ss_pred CCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013210 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP 227 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~~ 227 (447)
++...|+..+++++++-||++|+-||+|-++.+
T Consensus 74 idp~~Gt~~d~~~lv~~ah~~Gi~vilD~V~NH 106 (424)
T 2dh2_A 74 IDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNY 106 (424)
T ss_dssp ECGGGCCHHHHHHHHHHHHHTTCEEEEECCTTT
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 344567888999999999999999999999743
No 289
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=24.36 E-value=2.5e+02 Score=24.82 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=34.2
Q ss_pred cCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcC-CE
Q 013210 163 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VT 218 (447)
Q Consensus 163 ~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~g-i~ 218 (447)
.|+++...|..|.+.+.+++ + ....|+...... .+.....+.+.|++.| +-
T Consensus 55 ~~v~~v~~D~~d~~~l~~~~-~-~~d~vi~~a~~~---~~~~~~~l~~aa~~~g~v~ 106 (307)
T 2gas_A 55 LGVILLEGDINDHETLVKAI-K-QVDIVICAAGRL---LIEDQVKIIKAIKEAGNVK 106 (307)
T ss_dssp TTCEEEECCTTCHHHHHHHH-T-TCSEEEECSSSS---CGGGHHHHHHHHHHHCCCS
T ss_pred CCCEEEEeCCCCHHHHHHHH-h-CCCEEEECCccc---ccccHHHHHHHHHhcCCce
Confidence 47788888888999999998 4 355555433211 1344567888888877 53
No 290
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=23.66 E-value=42 Score=32.92 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.8
Q ss_pred CCCCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 196 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 196 ~NptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
+...|+..+++++++-||++|+-||+|-|..
T Consensus 91 dp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (478)
T 2guy_A 91 NENYGTADDLKALSSALHERGMYLMVDVVAN 121 (478)
T ss_dssp CTTSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CccCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 3456788899999999999999999999873
No 291
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=23.38 E-value=43 Score=32.10 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP 227 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~~~ 227 (447)
...|+..+++++++-||++|+-||+|-++.+
T Consensus 63 ~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH 93 (405)
T 1ht6_A 63 SKYGNAAELKSLIGALHGKGVQAIADIVINH 93 (405)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECcCc
Confidence 3347778899999999999999999998743
No 292
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=22.95 E-value=1.5e+02 Score=26.16 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=50.5
Q ss_pred EEEeC-ChHHHHHHHHHHhcCC-CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEc
Q 013210 117 AYCTA-SGMSAISSVLMQLCSS-GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 194 (447)
Q Consensus 117 ~~~ts-ggt~A~~~al~~l~~~-gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~ 194 (447)
+++|. +|.-+-..+-. +.+. |.+|++..-.-.. ...+ .. .++++...|..|.+.+++++ + ....|+...
T Consensus 3 ilVtGatG~iG~~l~~~-L~~~~g~~V~~~~R~~~~----~~~~-~~-~~v~~~~~D~~d~~~l~~~~-~-~~d~vi~~a 73 (289)
T 3e48_A 3 IMLTGATGHLGTHITNQ-AIANHIDHFHIGVRNVEK----VPDD-WR-GKVSVRQLDYFNQESMVEAF-K-GMDTVVFIP 73 (289)
T ss_dssp EEEETTTSHHHHHHHHH-HHHTTCTTEEEEESSGGG----SCGG-GB-TTBEEEECCTTCHHHHHHHT-T-TCSEEEECC
T ss_pred EEEEcCCchHHHHHHHH-HhhCCCCcEEEEECCHHH----HHHh-hh-CCCEEEEcCCCCHHHHHHHH-h-CCCEEEEeC
Confidence 45554 45555554443 5554 6666554322111 1111 12 47788888888999999988 4 355555433
Q ss_pred CC-CCC-ccccCHHHHHHHHHhcCC
Q 013210 195 IS-NPT-LAVANIPELSRLAHDKGV 217 (447)
Q Consensus 195 ~~-Npt-G~v~~l~~I~~la~~~gi 217 (447)
.. ++. ..+.....+.+.|++.|+
T Consensus 74 ~~~~~~~~~~~~~~~l~~aa~~~gv 98 (289)
T 3e48_A 74 SIIHPSFKRIPEVENLVYAAKQSGV 98 (289)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccchhhHHHHHHHHHHHHHcCC
Confidence 22 111 012234678888888875
No 293
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.70 E-value=3.1e+02 Score=22.25 Aligned_cols=36 Identities=11% Similarity=-0.058 Sum_probs=22.2
Q ss_pred cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEE--EEeC
Q 013210 184 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV--VVDN 223 (447)
Q Consensus 184 ~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~l--ivD~ 223 (447)
+++.-+|.+.. .|...++-++++.++++|+.+ |.|.
T Consensus 78 ~~~d~vI~iS~----sG~t~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 78 AEGDLVIIGSG----SGETKSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp CTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEEcC----CCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 34444444422 455567778889999988654 4554
No 294
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=22.48 E-value=1.5e+02 Score=27.54 Aligned_cols=68 Identities=6% Similarity=-0.065 Sum_probs=41.7
Q ss_pred cCCCCeEEEeCCCchhH------HHHHHhhcCcccCeeEEEeCCC-------------CHHHHHHhhccCCceEEEEEcC
Q 013210 135 CSSGGHVVAARTLYGGT------HALLTHFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESI 195 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~------~~~~~~~~~~~~g~~~~~v~~~-------------d~~~l~~~i~~~~t~lV~i~~~ 195 (447)
+++||+|-+..|..+.. .......+.. .|.+++.-+.. -.++|.+++.++++++|++.--
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQ-KGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHH-TTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHh-CCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 57899998888876432 1122234444 68888764421 2567777786788899887654
Q ss_pred CCCCcccc
Q 013210 196 SNPTLAVA 203 (447)
Q Consensus 196 ~NptG~v~ 203 (447)
..-+-.+.
T Consensus 89 G~g~~rlL 96 (336)
T 3sr3_A 89 GMNSNSLL 96 (336)
T ss_dssp CSCGGGGG
T ss_pred cccHHHHh
Confidence 44333443
No 295
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=22.44 E-value=2.4e+02 Score=22.35 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=44.2
Q ss_pred HHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--C-H----HHHHHhhccCCceEEEEEcCCCCCccccC
Q 013210 132 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--D-H----EMVNSAIVQGRTKVLYFESISNPTLAVAN 204 (447)
Q Consensus 132 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--d-~----~~l~~~i~~~~t~lV~i~~~~NptG~v~~ 204 (447)
+.+..-|=+|+.+.. +...++ . .|+++..+... . - ..+.+.|++.+..+|+-. |..-.....|
T Consensus 44 ~~l~~lGf~i~AT~G----Ta~~L~----~-~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt-~~~~~~~~~d 113 (143)
T 2yvq_A 44 EQLHNEGFKLFATEA----TSDWLN----A-NNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINL-PNNNTKFVHD 113 (143)
T ss_dssp HHHHTTTCEEEEEHH----HHHHHH----H-TTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEEC-CCCCGGGHHH
T ss_pred HHHHHCCCEEEECch----HHHHHH----H-cCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEEC-CCCCCcCCcc
Confidence 344444556665543 333332 2 45555555321 1 1 246666756777777643 2211122345
Q ss_pred HHHHHHHHHhcCCEEEEe
Q 013210 205 IPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 205 l~~I~~la~~~gi~livD 222 (447)
-..|.+.|-+|+++++..
T Consensus 114 ~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 114 NYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp HHHHHHHHHHTTCCEECS
T ss_pred HHHHHHHHHHhCCCeEcC
Confidence 668999999999998753
No 296
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=22.19 E-value=31 Score=33.85 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=48.0
Q ss_pred CCeEEEeCCC--chhHHHHHHhhcCcccCeeEEEeCCC-C-HH-HHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHH
Q 013210 138 GGHVVAARTL--YGGTHALLTHFFPRACNITTTFVDIS-D-HE-MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212 (447)
Q Consensus 138 gd~Vi~~~~~--y~~~~~~~~~~~~~~~g~~~~~v~~~-d-~~-~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la 212 (447)
++.|++.-.+ +.+...-+..++.. +|+...++.+- . .. +-...-..-.+.- + .++...|+..+++++++.|
T Consensus 9 ~~~~i~~~F~w~~~gi~~~~ldyL~~-LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~d-y--~idp~~Gt~~d~~~lv~~~ 84 (471)
T 1jae_A 9 GRNSIVHLFEWKWNDIADECERFLQP-QGFGGVQISPPNEYLVADGRPWWERYQPVS-Y--IINTRSGDESAFTDMTRRC 84 (471)
T ss_dssp TCEEEEEETTCCHHHHHHHHHHTTTT-TTEEEEECCCCSCBBCCTTCCGGGGGSBCC-S--CSEETTEEHHHHHHHHHHH
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHH-cCCCEEEeCccccccCCCCCCccccccccc-c--cccCCCCCHHHHHHHHHHH
Confidence 4556654443 34444432134555 78888776542 0 00 0000000001111 2 3445578888999999999
Q ss_pred HhcCCEEEEeCCCC
Q 013210 213 HDKGVTVVVDNTFS 226 (447)
Q Consensus 213 ~~~gi~livD~~~~ 226 (447)
|++|+.||+|-|+-
T Consensus 85 h~~Gi~VilD~V~N 98 (471)
T 1jae_A 85 NDAGVRIYVDAVIN 98 (471)
T ss_dssp HHTTCEEEEEECCS
T ss_pred HHCCCEEEEEEecc
Confidence 99999999999973
No 297
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=21.74 E-value=41 Score=35.12 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=25.5
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP 227 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~~~ 227 (447)
.|++.+.+++++++.||++|+-||+|-|+.+
T Consensus 249 ~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH 279 (714)
T 2ya0_A 249 NPEKRIAEFKNLINEIHKRGMGAILDVVYNH 279 (714)
T ss_dssp STTHHHHHHHHHHHHHHHTTCEEEEEECTTB
T ss_pred CccchHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 3444567899999999999999999999843
No 298
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=21.72 E-value=4.4e+02 Score=23.61 Aligned_cols=69 Identities=7% Similarity=0.102 Sum_probs=40.9
Q ss_pred CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC----C---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHH
Q 013210 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209 (447)
Q Consensus 137 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~----~---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~ 209 (447)
++..++++.+.|.-... + +|++...+.. . ++.+|.+.++..++++|+++.-.++. -+.
T Consensus 189 ~~~~~v~~H~af~Yf~~-------~-yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~-------~~~ 253 (291)
T 1pq4_A 189 PQRKFIVFHPSWAYFAR-------D-YNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVFGETQFSTK-------SSE 253 (291)
T ss_dssp SCCEEEESSCCCHHHHH-------H-TTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEEEETTSCCH-------HHH
T ss_pred CCCEEEEECCchHHHHH-------H-CCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChH-------HHH
Confidence 46788888887653321 1 5666544321 1 44555555655788899887655542 223
Q ss_pred HHHHhcCCEEE
Q 013210 210 RLAHDKGVTVV 220 (447)
Q Consensus 210 ~la~~~gi~li 220 (447)
.++++.|+.++
T Consensus 254 ~ia~~~g~~v~ 264 (291)
T 1pq4_A 254 AIAAEIGAGVE 264 (291)
T ss_dssp HHHHHHTCEEE
T ss_pred HHHHHcCCeEE
Confidence 45777787654
No 299
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=21.62 E-value=53 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCEEEEeCC
Q 013210 205 IPELSRLAHDKGVTVVVDNT 224 (447)
Q Consensus 205 l~~I~~la~~~gi~livD~~ 224 (447)
-.+|.++|+++|+.++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEECHH
Confidence 46899999999999999953
No 300
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.47 E-value=1.1e+02 Score=24.08 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=37.5
Q ss_pred HHHhhcCcccCeeEEEeCCC-CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcC
Q 013210 154 LLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 216 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~g 216 (447)
.+..++.. .|+++.++-.+ .++++.+++.+.+..+|.++....+ ....++++.+..++.+
T Consensus 22 ~v~~~l~~-~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 22 ILDHAFTN-AGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQ--GEIDCKGLRQKCDEAG 82 (137)
T ss_dssp HHHHHHHH-TTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSST--HHHHHTTHHHHHHHTT
T ss_pred HHHHHHHH-CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcC--cHHHHHHHHHHHHhcC
Confidence 33344444 79999876544 7788877775667778877665432 2334566666666643
No 301
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=21.38 E-value=53 Score=33.26 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=25.8
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 228 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 228 (447)
...|+..+++++++-||++|+-||+|-|+.++
T Consensus 213 p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 244 (583)
T 1ea9_C 213 PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHS 244 (583)
T ss_dssp TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEccccC
Confidence 33466677999999999999999999997433
No 302
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=21.19 E-value=2.6e+02 Score=23.70 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=47.2
Q ss_pred CeEEEeC-ChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEE
Q 013210 115 EAAYCTA-SGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYF 192 (447)
Q Consensus 115 ~~~~~ts-ggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i 192 (447)
..+++|. +|.-+-. ++..|+..| -+|++..-.-.. +.... . .++.+...|..|.+++++++ + ...+|+.
T Consensus 24 k~vlVtGatG~iG~~-l~~~L~~~G~~~V~~~~R~~~~----~~~~~-~-~~~~~~~~Dl~d~~~~~~~~-~-~~D~vv~ 94 (236)
T 3qvo_A 24 KNVLILGAGGQIARH-VINQLADKQTIKQTLFARQPAK----IHKPY-P-TNSQIIMGDVLNHAALKQAM-Q-GQDIVYA 94 (236)
T ss_dssp EEEEEETTTSHHHHH-HHHHHTTCTTEEEEEEESSGGG----SCSSC-C-TTEEEEECCTTCHHHHHHHH-T-TCSEEEE
T ss_pred cEEEEEeCCcHHHHH-HHHHHHhCCCceEEEEEcChhh----hcccc-c-CCcEEEEecCCCHHHHHHHh-c-CCCEEEE
Confidence 3466665 3333333 335567778 466654322111 10111 1 35667777888999999988 4 3455553
Q ss_pred EcCCCCCccccCHHHHHHHHHhcC
Q 013210 193 ESISNPTLAVANIPELSRLAHDKG 216 (447)
Q Consensus 193 ~~~~NptG~v~~l~~I~~la~~~g 216 (447)
.... .......+.+.+.+++.+
T Consensus 95 ~a~~--~~~~~~~~~~~~~~~~~~ 116 (236)
T 3qvo_A 95 NLTG--EDLDIQANSVIAAMKACD 116 (236)
T ss_dssp ECCS--TTHHHHHHHHHHHHHHTT
T ss_pred cCCC--CchhHHHHHHHHHHHHcC
Confidence 3221 111123456677776654
No 303
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=21.03 E-value=1.6e+02 Score=27.39 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=47.6
Q ss_pred CCCchhHHHHHHhhcCcccCeeEEEeCCCC-HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeC
Q 013210 145 RTLYGGTHALLTHFFPRACNITTTFVDISD-HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 145 ~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d-~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~ 223 (447)
-|.|.+..+.... .+. ...-+.+++... .+.+.+++....++.|++-+-.-|. .+.+++.++|+++|+.++==+
T Consensus 64 vpvy~sv~ea~~~-~p~-~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e---~~~~~l~~~a~~~g~rliGPN 138 (334)
T 3mwd_B 64 IPVFKNMADAMRK-HPE-VDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPE---ALTRKLIKKADQKGVTIIGPA 138 (334)
T ss_dssp EEEESSHHHHHHH-CTT-CCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCH---HHHHHHHHHHHHHTCEEECSS
T ss_pred ceeeCCHHHHhhc-CCC-CcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCH---HHHHHHHHHHHHcCCEEEccC
Confidence 3566666665421 111 345666777665 4677777733667777764322221 467799999999999888666
Q ss_pred CC
Q 013210 224 TF 225 (447)
Q Consensus 224 ~~ 225 (447)
+.
T Consensus 139 c~ 140 (334)
T 3mwd_B 139 TV 140 (334)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 304
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=21.01 E-value=46 Score=32.54 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=24.0
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
..|+..+++++++-||++|+-||+|-++.
T Consensus 92 ~~Gt~~df~~lv~~~h~~Gi~VilD~V~N 120 (475)
T 2z1k_A 92 ILGGNEALRHLLEVAHAHGVRVILDGVFN 120 (475)
T ss_dssp GGTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 34677888899999999999999998863
No 305
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=21.00 E-value=1.4e+02 Score=27.77 Aligned_cols=68 Identities=7% Similarity=-0.008 Sum_probs=42.3
Q ss_pred cCCCCeEEEeCCCchhH---HHHH---HhhcCcccCeeEEEeCCC-------------CHHHHHHhhccCCceEEEEEcC
Q 013210 135 CSSGGHVVAARTLYGGT---HALL---THFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESI 195 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~---~~~~---~~~~~~~~g~~~~~v~~~-------------d~~~l~~~i~~~~t~lV~i~~~ 195 (447)
+++||+|-+..|..+.. ...+ ...+.. .|.+++.-+.. -.++|.+++.++++++|++.--
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTE-LGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHH-TTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHh-CCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 57899998888776532 2222 234444 68888875431 2567777886778899887554
Q ss_pred CCCCcccc
Q 013210 196 SNPTLAVA 203 (447)
Q Consensus 196 ~NptG~v~ 203 (447)
..-+-.+.
T Consensus 88 G~g~~rlL 95 (331)
T 4e5s_A 88 GYNSNGLL 95 (331)
T ss_dssp CSCGGGGG
T ss_pred cccHHHHH
Confidence 43333443
No 306
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=20.96 E-value=50 Score=33.18 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCCCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 196 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 196 ~NptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
+...|+..+++++++.||++|+-||+|-|+.
T Consensus 73 dp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 103 (557)
T 1zja_A 73 MKEYGTMEDFDRLMAELKKRGMRLMVDVVIN 103 (557)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 3445777889999999999999999998873
No 307
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=20.91 E-value=2.9e+02 Score=21.21 Aligned_cols=54 Identities=15% Similarity=0.376 Sum_probs=33.6
Q ss_pred cCeeEEEeCCCCHHHHHHhhcc----------CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEE
Q 013210 163 CNITTTFVDISDHEMVNSAIVQ----------GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 220 (447)
Q Consensus 163 ~g~~~~~v~~~d~~~l~~~i~~----------~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~li 220 (447)
.+..+..++..|++.|.+.++. ..+-+|-+.... ...++.+|.++++++|+.++
T Consensus 15 ~~l~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 15 FTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CCCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEE
T ss_pred eeEEEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEE
Confidence 4555666656688777766521 122233344333 23689999999999998875
No 308
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=20.90 E-value=44 Score=32.86 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=27.0
Q ss_pred CCCCCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
++...|+..+++++++.||++|+-||+|-|+.
T Consensus 90 id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (484)
T 2aaa_A 90 VNSNFGTADNLKSLSDALHARGMYLMVDVVPD 121 (484)
T ss_dssp ECTTTCCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 34456778899999999999999999999873
No 309
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=20.79 E-value=49 Score=24.73 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCEEEEeCC
Q 013210 205 IPELSRLAHDKGVTVVVDNT 224 (447)
Q Consensus 205 l~~I~~la~~~gi~livD~~ 224 (447)
-++|.++|+++|+.++.|..
T Consensus 44 A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCeEEECHH
Confidence 46899999999999999853
No 310
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=20.69 E-value=50 Score=33.46 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=27.2
Q ss_pred CCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013210 196 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 228 (447)
Q Consensus 196 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 228 (447)
+...|+..+++++++.||++|+-||+|-|+.++
T Consensus 216 dp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 248 (588)
T 1j0h_A 216 DPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHC 248 (588)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CccCCCHHHHHHHHHHHHHCCCEEEEEECcCcC
Confidence 344577788999999999999999999987433
No 311
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=20.65 E-value=42 Score=32.57 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.3
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~ 225 (447)
.|...+++++++.||++|+.||+|-+.
T Consensus 80 ~Gt~~~~~~lv~~~h~~Gi~vi~D~V~ 106 (449)
T 3dhu_A 80 YGTLADFKALTDRAHELGMKVMLDIVY 106 (449)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 455567899999999999999999886
No 312
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.62 E-value=2.8e+02 Score=25.29 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=40.6
Q ss_pred CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC------C---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHH
Q 013210 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 207 (447)
Q Consensus 137 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~------~---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~ 207 (447)
++..+++..+.|.-+ . +.+|++...+.. . ++.+|.+.+++.++++|+++.-.++ +-
T Consensus 189 ~~~~~v~~H~af~Yf---a-----~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~ 253 (312)
T 2o1e_A 189 EKKEFITQHTAFGYL---A-----KEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASS-------KV 253 (312)
T ss_dssp SCCEEEESSCTTHHH---H-----HHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCH-------HH
T ss_pred CCCEEEEECCchHHH---H-----HHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HH
Confidence 466788877765422 1 125766554421 1 4455555665567888887654433 34
Q ss_pred HHHHHHhcCCEEE
Q 013210 208 LSRLAHDKGVTVV 220 (447)
Q Consensus 208 I~~la~~~gi~li 220 (447)
+..++++.|+.++
T Consensus 254 ~~~ia~e~g~~v~ 266 (312)
T 2o1e_A 254 ADTLASEIGAKTE 266 (312)
T ss_dssp HHHHHHHTCCEEE
T ss_pred HHHHHHHhCCcEE
Confidence 4556788888754
No 313
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.61 E-value=3.1e+02 Score=24.13 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=44.9
Q ss_pred CCeEEEeCC--Cchh-HHHHHHhhcCcccCeeEEEeCCC-CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 138 GGHVVAART--LYGG-THALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 138 gd~Vi~~~~--~y~~-~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
+.+|++..+ +.|. -...+...+.. .|+++.++..+ .++++.+++...++.+|.+..... .....++++.+..+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~-~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~--~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRA-NGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMT--TTMYAFKEVNDMLL 199 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHH-TTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCT--TTTTHHHHHHHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecc--CCHHHHHHHHHHHH
Confidence 345655432 3333 23333344444 79998876543 567776666456777887765432 34556788888887
Q ss_pred hcC
Q 013210 214 DKG 216 (447)
Q Consensus 214 ~~g 216 (447)
+.+
T Consensus 200 ~~~ 202 (258)
T 2i2x_B 200 ENG 202 (258)
T ss_dssp TTT
T ss_pred hcC
Confidence 754
No 314
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=20.41 E-value=4.5e+02 Score=23.26 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=28.4
Q ss_pred CHHHHHHhhc-cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC
Q 013210 174 DHEMVNSAIV-QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 174 d~~~l~~~i~-~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~ 225 (447)
+.+++..... -.+.++|++.... + ..-+.++.+.++++|+.+++|-..
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~g~~-~---~~~~~~~~~~a~~~g~~v~~D~~~ 166 (299)
T 3ikh_A 118 SLDEMIPHMADAVAGDILLQQGNF-S---LDKTRALFQYARSRGMTTVFNPSP 166 (299)
T ss_dssp CHHHHGGGGTTCCTTCEEEECSCS-C---HHHHHHHHHHHHHTTCEEEECCCS
T ss_pred CHHHHHHHHhhhccCCEEEECCCC-C---HHHHHHHHHHHHHcCCEEEEcccc
Confidence 4455543221 1345677764211 0 123567788889999999999764
No 315
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=20.23 E-value=44 Score=32.85 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCC
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~ 225 (447)
...|+..+++++++-||++|+-||+|-|+
T Consensus 97 p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~ 125 (488)
T 2wc7_A 97 PMLGGNEAFKELLDAAHQRNIKVVLDGVF 125 (488)
T ss_dssp GGGTHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34577788999999999999999999886
No 316
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=20.16 E-value=4.4e+02 Score=23.36 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCccc-cCHHHHHHHHHhcCCEEEEeC
Q 013210 186 RTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 186 ~t~lV~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~ 223 (447)
+.+++++... .+.+.. .-+.++.+.++++|+.+++|-
T Consensus 125 ~~~~v~~~g~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 162 (306)
T 2abq_A 125 KGDVLVLAGS-VPQAMPQTIYRSMTQIAKERGAFVAVDT 162 (306)
T ss_dssp TTCEEEEESC-CCTTSCTTHHHHHHHHHHTTTCEEEEEC
T ss_pred CCCEEEEecC-CCCCCCHHHHHHHHHHHHhcCCEEEEEC
Confidence 4667776432 222222 236678888999999999995
Done!