BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013211
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
VL IL L G Y + E +DALYF +VT+ T+GYG+ +P+T K+F+I
Sbjct: 12 VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTI 64
Query: 228 LFVLVGFGFV 237
L++ +G G V
Sbjct: 65 LYIFIGIGLV 74
Score = 35.0 bits (79), Expect = 0.094, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 30/42 (71%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVGYG+ + ++ G++F +++ +
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFI 69
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
VL IL L G Y + E +DALYF +VT+ T+GYG+ +P+T K+F+I
Sbjct: 12 VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTI 64
Query: 228 LFVLVGFGFV 237
L++ +G G V
Sbjct: 65 LYIFIGIGLV 74
Score = 34.7 bits (78), Expect = 0.098, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 30/42 (71%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVGYG+ + ++ G++F +++ +
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFI 69
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
+DALYF +VT+ T+GYGD +P+T K+F+IL++ +G G V
Sbjct: 34 IDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVGYGD + ++ G++F +++ +
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFI 69
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
+DALYF +VT+ T+G+GD +P+T K+F+IL++ +G G V
Sbjct: 34 IDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVG+GD + ++ G++F +++ +
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFI 69
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
+DAL+F +VT+ T+GYGD +P+T K+F+IL++ +G G V
Sbjct: 34 IDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ + SV+++TTVGYGD + ++ G++F +++ +
Sbjct: 28 VEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFI 69
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
+DAL+F +VT+ T+GYGD +P+T K+F+IL++ +G G V
Sbjct: 34 IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVS 350
VE L +D+ + SV+++TTVGYGD + ++ G++F +++ +
Sbjct: 28 VEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG 70
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
VL IL L G Y + E +DALYF +VT+ T+G G+ +P+T K+F+I
Sbjct: 29 VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTI 81
Query: 228 LFVLVGFGFV 237
L++ +G G V
Sbjct: 82 LYIFIGIGLV 91
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVG G+ + ++ G++F +++ +
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFI 86
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
VL IL L G Y + E +DALYF +VT+ T+G G+ +P+T K+F+I
Sbjct: 29 VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTI 81
Query: 228 LFVLVGFGFV 237
L++ +G G V
Sbjct: 82 LYIFIGIGLV 91
Score = 31.6 bits (70), Expect = 0.94, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVG G+ + ++ G++F +++ +
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFI 86
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
VL IL L G Y + E +DALYF +VT+ T+G G+ +P+T K+F+I
Sbjct: 29 VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTI 81
Query: 228 LFVLVGFGFV 237
L++ +G G V
Sbjct: 82 LYIFIGIGLV 91
Score = 31.6 bits (70), Expect = 0.99, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVG G+ + ++ G++F +++ +
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFI 86
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
VL IL L G Y + E +DALYF +VT+ T+G G+ +P+T K+F+I
Sbjct: 29 VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTI 81
Query: 228 LFVLVGFGFV 237
L++ +G G V
Sbjct: 82 LYIFIGIGLV 91
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVG G+ + ++ G++F +++ +
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFI 86
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
VL IL L G Y + E +DALYF +VT+ T+G G+ +P+T K+F+I
Sbjct: 11 VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTI 63
Query: 228 LFVLVGFGFV 237
L++ +G G V
Sbjct: 64 LYIFIGIGLV 73
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVG G+ + ++ G++F +++ +
Sbjct: 27 VEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFI 68
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
+DALYF +VT+ T+G G+ +P+T KVF+IL++ +G G V
Sbjct: 54 LDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLV 94
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L LD+ Y SV+++TTVG G+ + ++ G++F +++ +
Sbjct: 48 VEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFI 89
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
+DALYF +VT+ T+G GD +P+T K+F+IL++ +G G V
Sbjct: 34 IDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVG GD + ++ G++F +++ +
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFI 69
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
+DALYF +VT+ T+G G+ P+T K+F+IL++ +G G V
Sbjct: 51 IDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLV 91
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 308 VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV 349
VE L +D+ Y SV+++TTVG G+ ++ G++F +++ +
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFI 86
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
IL L L V IY +F E+ V +LY+ VT+ T+GYGD +P T F++ +
Sbjct: 23 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPSTPLGMYFTVTLI 80
Query: 231 LVGFGFVDILLTGMVSYVLDLQENYLLRTI 260
++G G + + ++ ++++ ++ L+ I
Sbjct: 81 VLGIGTFAVAVERLLEFLINREQMKLMGLI 110
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 306 HFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEAR 365
HF+E W S Y + +++ TVGYGD + + G F +++ A A L E
Sbjct: 39 HFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 98
Query: 366 VDKRHRKM 373
+++ K+
Sbjct: 99 INREQMKL 106
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
AV+L +LY + + I + N S V DAL++ +VT T+GYGD+ P T KV
Sbjct: 151 AVMLTVLYGAFAIYIVEYPDPN---SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVI 207
Query: 226 SILFVLVGFGFVDILLTGMVS 246
I +L G + LL G VS
Sbjct: 208 GIAVMLTGISALT-LLIGTVS 227
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
IL L L V IY +F E+ V +LY+ VT+ T+GYGD +PRT F+ +
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPRTPLGMYFTCTLI 63
Query: 231 LVGFGFVDILLTGMVSYVL 249
++G G + + ++ +++
Sbjct: 64 VLGIGTFAVAVERLLEFLI 82
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 306 HFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFAS--IWLLVSTLAVA 355
HF+E W S Y + +++ TVGYGD + ++ G F I L + T AVA
Sbjct: 22 HFIEGESWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVA 73
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
AV+L +LY + + I + N S V DAL++ +VT T+GYGD+ P T KV
Sbjct: 139 AVMLTVLYGAFAIYIVEYPDPN---SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVI 195
Query: 226 SILFVLVGFGFVDILLTGMVS 246
I +L G + LL G VS
Sbjct: 196 GIAVMLTGISALT-LLIGTVS 215
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
IL L L V IY +F E+ V +LY+ VT+ T+GYGD +P T F++ +
Sbjct: 23 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPSTPLGMYFTVTLI 80
Query: 231 LVGFGFVDILLTGMVSYVLDLQENYLL 257
++G + + +++++++ ++ L+
Sbjct: 81 VLGIATFAVAVARLLTFLINREQMKLI 107
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 306 HFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV---STLAVARAFL 359
HF+E W S Y + +++ TVGYGD + S P ++ ++ L+V +T AVA A L
Sbjct: 39 HFIEGESWTVSLYWTFVTIATVGYGDYS-PSTPLGMYFTVTLIVLGIATFAVAVARL 94
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 169 LLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKV 224
LLI +L +GV ++ +F + S+ + DA ++ +V+M T+GYGD+ P T+ K+
Sbjct: 345 LLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 404
Query: 225 FSILFVLVG 233
L + G
Sbjct: 405 VGSLCAIAG 413
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 315 DSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVA 355
D+F+ +V+S+TTVGYGD ++ G++ S+ + L +A
Sbjct: 378 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 418
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 169 LLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKV 224
LLI +L +GV ++ +F + S+ + DA ++ +V+M T+GYGD+ P T+ K+
Sbjct: 345 LLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 404
Query: 225 FSILFVLVG 233
L + G
Sbjct: 405 VGSLCAIAG 413
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 315 DSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVA 355
D+F+ +V+S+TTVGYGD ++ G++ S+ + L +A
Sbjct: 378 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 418
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 169 LLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKV 224
LLI +L +GV ++ +F + S+ + DA ++ +V+M T+GYGD+ P T+ K+
Sbjct: 330 LLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 389
Query: 225 FSILFVLVG 233
L + G
Sbjct: 390 VGSLCAIAG 398
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 315 DSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVA 355
D+F+ +V+S+TTVGYGD ++ G++ S+ + L +A
Sbjct: 363 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 403
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 169 LLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKV 224
LLI +L +GV ++ +F + S+ + DA ++ +V+M T+GYGD+ P T+ K+
Sbjct: 330 LLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 389
Query: 225 FSILFVLVG 233
L + G
Sbjct: 390 VGSLCAIAG 398
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 315 DSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVA 355
D+F+ +V+S+TTVGYGD ++ G++ S+ + L +A
Sbjct: 363 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 403
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 157 FGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDIT 216
F S + R ++ ++L + + V + F E + DAL++ IVT T+GYGDI
Sbjct: 11 FRSNGLNRFLMIFVLLVIIIPVPMV------FIEPEINNYPDALWWAIVTATTVGYGDIV 64
Query: 217 PRTVPTKVFSILFVLVGFGFVDILLTGMVSY 247
P T ++ + + +L G F+ ++ + + ++
Sbjct: 65 PVTPIGRILASIMMLFGIAFIGMITSTITNF 95
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 315 DSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLL 348
D+ + ++++ TTVGYGD + GR+ ASI +L
Sbjct: 46 DALWWAIVTATTVGYGDIVPVTPIGRILASIMML 79
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
IL L L V IY +F E+ V +LY+ VT+ T+GYGD +P T F+ +
Sbjct: 13 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLI 70
Query: 231 LVGFGFVDILLTGMVSYVLD 250
++G G + + ++ ++++
Sbjct: 71 VLGIGTFAVAVERLLEFLIN 90
Score = 35.4 bits (80), Expect = 0.061, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 306 HFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFAS--IWLLVSTLAVA 355
HF+E W S Y + +++ TVGYGD + + G F I L + T AVA
Sbjct: 29 HFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 80
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
IL L L V IY +F E+ V +LY+ VT+ T+GYGD +P T F+ +
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLI 63
Query: 231 LVGFGFVDILLTGMVSYVL 249
++G G + + ++ +++
Sbjct: 64 VLGIGTFAVAVQRLLEFLI 82
Score = 35.4 bits (80), Expect = 0.067, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 306 HFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFAS--IWLLVSTLAVA 355
HF+E W S Y + +++ TVGYGD + + G F I L + T AVA
Sbjct: 22 HFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
IL L L V IY +F E+ V +LY+ VT+ T+GYGD +P T F+ +
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLI 63
Query: 231 LVGFGFVDILLTGMVSYVL 249
++G G + + ++ +++
Sbjct: 64 VLGIGTFAVAVERLLEFLI 82
Score = 35.4 bits (80), Expect = 0.068, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 306 HFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFAS--IWLLVSTLAVA 355
HF+E W S Y + +++ TVGYGD + + G F I L + T AVA
Sbjct: 22 HFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 190 ASETHP-VVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMV 245
A+++ P V A +F + T+ T+GYGD+ P+TV + L + VG + L TG+V
Sbjct: 90 ANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGI-ALSTGLV 145
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 312 GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVA 355
G++ +F+ SV ++ TVGYGD +++ A++ + V +A
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIA 139
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 190 ASETHP-VVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMV 245
A+++ P V A +F + T+ T+GYGD+ P+TV + L + VG + L TG+V
Sbjct: 90 ANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGI-ALSTGLV 145
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 312 GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVA 355
G++ +F+ SV ++ TVGYGD +++ A++ + V +A
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIA 139
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFV 230
IL L L V IY +F E+ V +LY+ VT+ +GYGD +P T F+ +
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLI 63
Query: 231 LVGFGFVDILLTGMVSYVL 249
++G G + + ++ +++
Sbjct: 64 VLGIGTFAVAVERLLEFLI 82
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 306 HFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFAS--IWLLVSTLAVA 355
HF+E W S Y + +++ VGYGD + + G F I L + T AVA
Sbjct: 22 HFIEGESWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
VL IL L G Y + E +DALYF +VT+ T+G P+T K+F+I
Sbjct: 12 VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVG-NTPPPQTDFGKIFTI 63
Query: 228 LFVLVGFGFV 237
L++ +G G V
Sbjct: 64 LYIFIGIGLV 73
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
VL IL L G Y + E +DALYF +VT+ T+G P+T K+F+I
Sbjct: 12 VLTILTLISGTIFY-------STVEGLRPIDALYFSVVTLTTVGETP-PPQTDFGKIFTI 63
Query: 228 LFVLVGFGFV 237
L++ +G G V
Sbjct: 64 LYIFIGIGLV 73
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 198 DALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLL 257
A +F + TIGYG++ RT ++F I + LVG ILL G+ + L
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGV--------GDRLG 169
Query: 258 RTIKGG-GHKESPGSYIIDVKKGRMRIRMKXXXXXXXXXXXXXXXXXXMHFVEKLGWLDS 316
+++ G GH E+ V +R+ ++E L++
Sbjct: 170 SSLRHGIGHIEAI-FLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEA 228
Query: 317 FYLSVMSVTTVGYGD 331
Y ++++TTVG+GD
Sbjct: 229 IYFVIVTLTTVGFGD 243
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 315 DSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVS 350
+F+ S +TT+GYG+ A ++ GRLF + LV
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVG 153
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 197 VDALYFCIVTMCTIGYGD 214
++A+YF IVT+ T+G+GD
Sbjct: 226 LEAIYFVIVTLTTVGFGD 243
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237
+DALYF +VT+ T+G P+T K+F+IL++ +G G V
Sbjct: 34 IDALYFSVVTLTTVG-DTPPPQTDFGKIFTILYIFIGIGLV 73
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 360 YLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSE--YVIYKLKEMGKISEK 417
+LA A +D+R L + + F D+DN+G ++ +E +V++ + G I+E+
Sbjct: 112 FLAAA-IDRRQ-------LSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNKRGNITER 163
Query: 418 DVMQICHKFDRLDTGNCGKITLADLME 444
DV Q+ +D GKI + E
Sbjct: 164 DVNQVKKMIREVDKNGDGKIDFYEFSE 190
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ ++T T+GYGD+ P T+ +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVITATTVGYGDLYPVTLWGRCV 70
Query: 226 SILFVLVG---FGFVDILL 241
+++ ++ G FG V L
Sbjct: 71 AVVVMVAGITSFGLVTAAL 89
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 199 ALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVG 233
A +F + T+ T+GYGD+ P+TV + L + VG
Sbjct: 82 AFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVG 116
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 312 GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLV--STLAVARAFLYLAEARVDKR 369
G+ +F+ SV ++ TVGYGD +++ A++ + V S++A+A ++ ++ KR
Sbjct: 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 42/89 (47%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + + DAL++ + T T+GYGD+ P T+ +
Sbjct: 55 ATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCV 114
Query: 226 SILFVLVGFGFVDILLTGMVSYVLDLQEN 254
+++ ++ G ++ + ++ + ++
Sbjct: 115 AVVVMVAGITSYGLVFAAVATWFVGREQE 143
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFS 226
+V+L+ Y S+ + W + + +Y+ I M T+G+GDIT + +F+
Sbjct: 28 LVMLLAYASIFRYLMWH-----LEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFA 82
Query: 227 ILFVLVGFGFVDILLT-GMVSYVL 249
+ + G F+DI+L G VS L
Sbjct: 83 SIVTVSGVIFLDIILPFGFVSMFL 106
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASI 345
++ Y ++ +TT+G+GD F+S G LFASI
Sbjct: 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASI 84
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 378 LGQDMTVAEFLAADIDNNGFVSKSE--YVIYKLKEMGKISEKDVMQICHKFDRLDTGNCG 435
L + + F D+DN+G ++ +E +++Y + G I+++DV ++ +D N G
Sbjct: 119 LSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDG 178
Query: 436 KITLADLME 444
KI + E
Sbjct: 179 KIDFHEFSE 187
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ ++
Sbjct: 39 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRLV 98
Query: 226 SILFVLVG---FGFVDILL 241
+++ ++ G FG V L
Sbjct: 99 AVVVMVAGITSFGLVTAAL 117
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 198 DALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFG----FVDILLTGMVSYVL--DL 251
A+++ +VT+ T GYGD P++ +V + ++ G G + IL TG V D
Sbjct: 164 QAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDF 223
Query: 252 QENYLLRTIKGGGHKESPGSYIIDVKKGRMR 282
N+ L K P + V+ R R
Sbjct: 224 VRNWQLVAAVPLFQKLGPAVLVEIVRALRAR 254
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ ++
Sbjct: 38 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 97
Query: 226 SILFVLVG---FGFVDILL 241
+++ ++ G FG V L
Sbjct: 98 AVVVMVAGITSFGLVTAAL 116
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ ++
Sbjct: 10 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLV 69
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 70 AVVVMVAGITSFGLV 84
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ ++
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLV 70
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 71 AVVVMVAGITSFGLV 85
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 198 DALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYV 248
AL+F + T GYG P + K F I++ ++G F + LT +V +
Sbjct: 96 SALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYL 256
+++ YFC +++ TIG GD P + F L+ + G LL G+++ ++ L+
Sbjct: 203 LESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKI---GITCYLLLGLIAMLVVLETFCE 259
Query: 257 LRTIK 261
L +K
Sbjct: 260 LHELK 264
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCV 91
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 92 AVVVMVAGITSFGLV 106
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ ++
Sbjct: 32 ATVLLVIVLLAGSYLACLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 91
Query: 226 SILFVLVG---FGFVDILL 241
+++ ++ G FG V L
Sbjct: 92 AVVVMVAGITSFGLVTAAL 110
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ ++
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 70
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 71 AVVVMVAGITSFGLV 85
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCV 70
Query: 226 SILFVLVG---FGFVDILL 241
+++ ++ G FG V L
Sbjct: 71 AVVVMVAGITSFGLVTAAL 89
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRCV 70
Query: 226 SILFVLVG---FGFVDILL 241
+++ ++ G FG V L
Sbjct: 71 AVVVMVAGITSFGLVTAAL 89
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGRCV 70
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 71 AVVVMVAGITSFGLV 85
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 193 THPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVG---FGFVDILL 241
T+P AL++ + T T+GYGD+ P T+ + +++ ++ G FG V L
Sbjct: 61 TYPA--ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAAL 110
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 92 AVVVMVAGITSFGLV 106
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 92 AVVVMVAGITSFGLV 106
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 92 AVVVMVAGITSFGLV 106
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 226 SILFVLVG---FGFVDILL 241
+++ ++ G FG V L
Sbjct: 92 AVVVMVAGITSFGLVTAAL 110
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 70
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 71 AVVVMVAGITSFGLV 85
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 32.0 bits (71), Expect = 0.67, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 10 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 69
Query: 226 SILFVLVG---FGFVDILL 241
+++ ++ G FG V L
Sbjct: 70 AVVVMVAGITSFGLVTAAL 88
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 12 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 71
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 72 AVVVMVAGITSFGLV 86
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASI 345
++ Y ++ +TT+G+GD F+S G LFASI
Sbjct: 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASI 84
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFS 226
+V+L+ Y S+ + W + + +Y+ I M T+G+GDIT + +F+
Sbjct: 28 LVMLLAYASIFRYLMWH-----LEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFA 82
Query: 227 ---------ILFVLVGFGFVDILL 241
L +++ FGFV + L
Sbjct: 83 SIVTVSGVIFLLIILPFGFVSMFL 106
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL 442
AAD D NG++ SE+V + +S+ + KFD+ GN GKI++ +L
Sbjct: 398 AADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQ--DGN-GKISVDEL 448
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 42/88 (47%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+ +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCV 91
Query: 226 SILFVLVGFGFVDILLTGMVSYVLDLQE 253
+++ ++ G ++ + ++ + ++
Sbjct: 92 AVVVMVAGITSAGLVTAALATWFVGREQ 119
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL 442
AAD D NG++ SE+V + +S+ + KFD+ GN GKI++ +L
Sbjct: 115 AADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQ--DGN-GKISVDEL 165
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A VLL++ L G + ++ AL++ + T +GYGD+ P T+ ++
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATCVGYGDLYPVTLWGRLV 91
Query: 226 SILFVLVG---FGFV 237
+++ ++ G FG V
Sbjct: 92 AVVVMVAGITSFGLV 106
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 197 VDALYFCIVTMCTIGYGDITP 217
DA +F + TM TIGYG + P
Sbjct: 84 TDAFFFSVQTMATIGYGKLIP 104
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 197 VDALYFCIVTMCTIGYGDITP 217
DA +F + TM TIGYG + P
Sbjct: 84 TDAFFFSVQTMATIGYGKLIP 104
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 197 VDALYFCIVTMCTIGYGDITP 217
DA +F + TM TIGYG + P
Sbjct: 84 TDAFFFSVQTMATIGYGKLIP 104
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 197 VDALYFCIVTMCTIGYGDITP 217
DA +F + TM TIGYG + P
Sbjct: 84 TDAFFFSVQTMATIGYGKLIP 104
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 197 VDALYFCIVTMCTIGYGDITP 217
DA +F + TM TIGYG + P
Sbjct: 84 TDAFFFSVQTMATIGYGKLIP 104
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 197 VDALYFCIVTMCTIGYGDITP 217
DA +F + TM TIGYG + P
Sbjct: 84 TDAFFFSVQTMATIGYGKLIP 104
>pdb|1MI4|A Chain A, Glyphosate Insensitive G96a Mutant Epsp Synthase Liganded
With Shikimate-3-Phosphate
Length = 427
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 231 LVGFGFVDILLTGMVSYVLDLQ-ENYLLRTIKGGGHKESPGSYIID 275
LV ++DI L M ++ ++++ ++Y +KGG +SPG+Y+++
Sbjct: 195 LVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 240
>pdb|1EPS|A Chain A, Structure And Topological Symmetry Of The Glyphosphate
5-enol- Pyruvylshikimate-3-phosphate Synthase: A
Distinctive Protein Fold
Length = 427
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 231 LVGFGFVDILLTGMVSYVLDLQ-ENYLLRTIKGGGHKESPGSYIID 275
LV ++DI L M ++ ++++ ++Y +KGG +SPG+Y+++
Sbjct: 195 LVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 240
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFA--------SIWLLVSTLAVARAFLYLA 362
+ + D+ + SV + TTVGYGDR + GR A ++ LV T A+A F+
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALV-TAALATDFVRRE 97
Query: 363 EAR 365
E R
Sbjct: 98 EER 100
>pdb|3FJX|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p
pdb|3FJZ|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p And
Glyphosate
Length = 427
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 231 LVGFGFVDILLTGMVSYVLDLQ-ENYLLRTIKGGGHKESPGSYIID 275
LV ++DI L M ++ ++++ ++Y +KGG +SPG+Y+++
Sbjct: 195 LVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 240
>pdb|2QFS|A Chain A, E.coli Epsp Synthase Pro101ser Liganded With S3p
pdb|2QFT|A Chain A, E.Coli Epsp Synthase Pro101ser Liganded With S3p And
Glyphosate
Length = 427
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 231 LVGFGFVDILLTGMVSYVLDLQ-ENYLLRTIKGGGHKESPGSYIID 275
LV ++DI L M ++ ++++ ++Y +KGG +SPG+Y+++
Sbjct: 195 LVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 240
>pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3-
Phosphate And Glyphosate
pdb|1G6T|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3-
Phosphate
pdb|1X8R|A Chain A, Epsps Liganded With The (s)-phosphonate Analog Of The
Tetrahedral Reaction Intermediate
pdb|1X8T|A Chain A, Epsps Liganded With The (r)-phosphonate Analog Of The
Tetrahedral Reaction Intermediate
pdb|2AA9|A Chain A, Epsp Synthase Liganded With Shikimate
pdb|2AAY|A Chain A, Epsp Synthase Liganded With Shikimate And Glyphosate
pdb|2PQ9|A Chain A, E. Coli Epsps Liganded With (R)-Difluoromethyl Tetrahedral
Reaction Intermediate Analog
Length = 427
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 231 LVGFGFVDILLTGMVSYVLDLQ-ENYLLRTIKGGGHKESPGSYIID 275
LV ++DI L M ++ ++++ ++Y +KGG +SPG+Y+++
Sbjct: 195 LVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 240
>pdb|2QFQ|A Chain A, E. Coli Epsp Synthase Pro101leu Liganded With S3p
pdb|2QFU|A Chain A, E.Coli Epsp Synthase Pro101leu Liganded With S3p And
Glyphosate
Length = 427
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 231 LVGFGFVDILLTGMVSYVLDLQ-ENYLLRTIKGGGHKESPGSYIID 275
LV ++DI L M ++ ++++ ++Y +KGG +SPG+Y+++
Sbjct: 195 LVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 240
>pdb|1Q36|A Chain A, Epsp Synthase (Asp313ala) Liganded With Tetrahedral
Reaction Intermediate
Length = 427
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 231 LVGFGFVDILLTGMVSYVLDLQ-ENYLLRTIKGGGHKESPGSYIID 275
LV ++DI L M ++ ++++ ++Y +KGG +SPG+Y+++
Sbjct: 195 LVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 240
>pdb|3FK0|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p
pdb|3FK1|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p
And Glyphosate
Length = 427
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 231 LVGFGFVDILLTGMVSYVLDLQ-ENYLLRTIKGGGHKESPGSYIID 275
LV ++DI L M ++ ++++ ++Y +KGG +SPG+Y+++
Sbjct: 195 LVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 240
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 381 DMTVAEFLAADIDNNGFVSKSEYV-----IY-------KLKEMGKISEKDVMQICHKFDR 428
D + F D+DNNG +S E + IY KL E EK V +I F+
Sbjct: 99 DKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKI---FNM 155
Query: 429 LDTGNCGKITLADLMEANK 447
+D G++TL + E +K
Sbjct: 156 MDKNKDGQLTLEEFCEGSK 174
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 387 FLAADIDNNGFVSKSEYV------------IYKLKEMGKISEKDVMQICHKFDRLDTGNC 434
F D+D NG++SK+E + + K+ E EK +I F ++DT
Sbjct: 105 FSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKI---FRQMDTNRD 161
Query: 435 GKITLADLMEANK 447
GK++L + + K
Sbjct: 162 GKLSLEEFIRGAK 174
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL 442
A D D NG++ SE+V + +S + ++ F D+ N GKI+ +L
Sbjct: 390 AVDFDKNGYIEYSEFVTVAMDRKTLLSRE---RLERAFRMFDSDNSGKISSTEL 440
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTV 220
A VLL++ L G + ++ AL++ + T T+GYGD+ P T+
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL 442
A D D NG++ SE+V + +S + ++ F D+ N GKI+ +L
Sbjct: 413 AVDFDKNGYIEYSEFVTVAMDRKTLLSRE---RLERAFRMFDSDNSGKISSTEL 463
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL 442
A D D NG++ SE+V + +S + ++ F D+ N GKI+ +L
Sbjct: 414 AVDFDKNGYIEYSEFVTVAMDRKTLLSRE---RLERAFRMFDSDNSGKISSTEL 464
>pdb|1P88|A Chain A, Substrate-Induced Structural Changes To The Isolated N-
Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate
Synthase
pdb|1P89|A Chain A, Substrate-Induced Structural Changes To The Isolated
N-Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate
Synthase
Length = 216
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 231 LVGFGFVDILLTGMVSYVLDLQ-ENYLLRTIKGGGHKESPGSYIID 275
LV ++DI L M ++ ++++ ++Y +KGG +SPG+Y+++
Sbjct: 171 LVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVE 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,605,309
Number of Sequences: 62578
Number of extensions: 371632
Number of successful extensions: 898
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 178
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)