Query 013211
Match_columns 447
No_of_seqs 393 out of 2632
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 01:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404 Tandem pore domain K+ 100.0 5.9E-28 1.3E-32 235.1 17.2 190 166-366 12-248 (350)
2 KOG1418 Tandem pore domain K+ 99.9 2.5E-26 5.5E-31 236.3 2.0 173 186-358 106-296 (433)
3 PF07885 Ion_trans_2: Ion chan 99.5 3.5E-14 7.6E-19 114.3 9.2 72 295-366 4-78 (79)
4 PF07885 Ion_trans_2: Ion chan 99.5 4E-14 8.7E-19 114.0 5.3 77 169-249 2-78 (79)
5 KOG1419 Voltage-gated K+ chann 99.4 1.2E-13 2.5E-18 143.2 1.1 83 285-367 231-324 (654)
6 KOG3713 Voltage-gated K+ chann 99.3 2.6E-12 5.7E-17 132.7 9.8 92 162-254 345-436 (477)
7 KOG3713 Voltage-gated K+ chann 99.3 2.7E-12 5.9E-17 132.6 9.4 57 311-367 376-432 (477)
8 KOG4404 Tandem pore domain K+ 99.3 8.6E-12 1.9E-16 122.6 10.2 89 155-250 153-249 (350)
9 KOG1419 Voltage-gated K+ chann 99.3 7.8E-12 1.7E-16 129.9 8.9 91 158-248 229-322 (654)
10 PRK10537 voltage-gated potassi 99.2 5.5E-10 1.2E-14 115.9 18.9 111 297-412 147-263 (393)
11 PRK10537 voltage-gated potassi 99.2 1.1E-10 2.4E-15 121.0 11.3 110 169-282 143-252 (393)
12 PLN03192 Voltage-dependent pot 99.1 1.3E-08 2.8E-13 115.3 27.1 56 313-368 251-306 (823)
13 PLN03192 Voltage-dependent pot 99.1 2.6E-10 5.5E-15 129.0 9.8 92 160-251 200-306 (823)
14 KOG1545 Voltage-gated shaker-l 99.0 9.5E-11 2.1E-15 116.5 3.5 53 311-363 392-444 (507)
15 KOG1545 Voltage-gated shaker-l 99.0 9.1E-11 2E-15 116.7 0.1 73 175-248 374-446 (507)
16 KOG1420 Ca2+-activated K+ chan 98.9 5E-10 1.1E-14 116.7 2.4 95 155-249 243-342 (1103)
17 KOG1418 Tandem pore domain K+ 98.8 7.7E-09 1.7E-13 106.4 6.2 59 310-368 113-171 (433)
18 KOG1420 Ca2+-activated K+ chan 98.7 4.8E-09 1E-13 109.5 1.3 82 286-367 249-343 (1103)
19 KOG4390 Voltage-gated A-type K 98.5 1.2E-08 2.6E-13 102.5 -1.0 79 171-250 333-411 (632)
20 KOG3684 Ca2+-activated K+ chan 98.5 1.5E-06 3.3E-11 89.4 13.2 82 288-369 255-344 (489)
21 KOG0498 K+-channel ERG and rel 98.4 5.8E-07 1.3E-11 98.9 9.1 55 313-367 295-349 (727)
22 KOG0498 K+-channel ERG and rel 98.4 6.3E-07 1.4E-11 98.6 8.7 90 162-251 234-350 (727)
23 KOG4390 Voltage-gated A-type K 98.3 1E-07 2.2E-12 95.9 -0.8 72 287-358 324-402 (632)
24 KOG3684 Ca2+-activated K+ chan 98.3 1.7E-06 3.6E-11 89.2 7.4 83 167-249 259-341 (489)
25 KOG0501 K+-channel KCNQ [Inorg 98.1 6.1E-05 1.3E-09 79.7 15.3 55 313-367 424-478 (971)
26 PF01007 IRK: Inward rectifier 98.0 9.2E-06 2E-10 82.8 5.5 92 158-249 33-140 (336)
27 PF01007 IRK: Inward rectifier 97.9 8E-05 1.7E-09 75.9 10.0 52 311-362 83-136 (336)
28 KOG0501 K+-channel KCNQ [Inorg 97.8 5.3E-05 1.1E-09 80.1 7.4 55 196-250 424-478 (971)
29 KOG0499 Cyclic nucleotide-gate 97.7 0.0035 7.5E-08 67.0 19.5 56 309-365 400-455 (815)
30 KOG3193 K+ channel subunit [In 97.6 8.5E-05 1.8E-09 78.0 5.7 63 191-253 213-275 (1087)
31 KOG3193 K+ channel subunit [In 97.4 0.00016 3.5E-09 76.0 4.8 58 311-368 216-273 (1087)
32 TIGR00933 2a38 potassium uptak 97.4 0.0013 2.9E-08 68.4 11.3 151 194-350 230-389 (390)
33 PRK10750 potassium transporter 96.9 0.0099 2.1E-07 63.7 12.4 151 195-350 304-465 (483)
34 KOG0500 Cyclic nucleotide-gate 96.9 0.0032 7E-08 66.0 8.2 93 158-251 126-238 (536)
35 KOG0500 Cyclic nucleotide-gate 96.7 0.014 3E-07 61.4 11.3 55 313-368 184-238 (536)
36 KOG3827 Inward rectifier K+ ch 96.4 0.0089 1.9E-07 61.1 7.4 92 158-249 61-168 (400)
37 PF00520 Ion_trans: Ion transp 96.3 0.009 2E-07 54.3 6.2 50 194-243 144-199 (200)
38 PF00520 Ion_trans: Ion transp 96.2 0.013 2.8E-07 53.2 6.8 49 311-359 144-198 (200)
39 PF02386 TrkH: Cation transpor 96.1 0.009 2E-07 61.4 5.7 151 195-350 176-338 (354)
40 TIGR00933 2a38 potassium uptak 95.9 0.032 7E-07 58.1 8.9 40 312-351 231-272 (390)
41 PRK05482 potassium-transportin 95.9 0.13 2.8E-06 55.7 13.5 42 311-352 450-493 (559)
42 COG0168 TrkG Trk-type K+ trans 95.6 0.21 4.6E-06 53.9 13.9 59 292-350 404-470 (499)
43 PRK10750 potassium transporter 95.3 0.17 3.7E-06 54.3 11.7 50 156-213 175-224 (483)
44 PF00060 Lig_chan: Ligand-gate 95.0 0.024 5.2E-07 49.9 3.8 58 194-252 43-100 (148)
45 PF13499 EF-hand_7: EF-hand do 95.0 0.035 7.6E-07 42.2 4.2 58 387-444 6-64 (66)
46 KOG3827 Inward rectifier K+ ch 94.6 0.11 2.3E-06 53.4 7.5 50 312-361 112-163 (400)
47 PF13202 EF-hand_5: EF hand; P 94.6 0.02 4.4E-07 35.8 1.5 23 422-444 1-23 (25)
48 KOG0027 Calmodulin and related 94.2 0.066 1.4E-06 48.1 4.7 57 388-444 51-109 (151)
49 PF00036 EF-hand_1: EF hand; 93.9 0.037 8E-07 35.9 1.7 24 421-444 1-24 (29)
50 KOG0499 Cyclic nucleotide-gate 93.8 0.06 1.3E-06 57.9 3.9 58 192-250 400-457 (815)
51 KOG3676 Ca2+-permeable cation 92.2 13 0.00028 41.9 19.1 54 313-366 587-648 (782)
52 PF13405 EF-hand_6: EF-hand do 91.5 0.11 2.4E-06 33.8 1.5 24 421-444 1-24 (31)
53 PF13833 EF-hand_8: EF-hand do 91.3 0.31 6.7E-06 35.5 3.9 46 395-444 2-49 (54)
54 PF00060 Lig_chan: Ligand-gate 90.6 0.38 8.3E-06 42.2 4.6 56 312-368 44-99 (148)
55 KOG0044 Ca2+ sensor (EF-Hand s 90.1 0.41 9E-06 45.2 4.5 59 387-445 106-172 (193)
56 cd05029 S-100A6 S-100A6: S-100 88.2 1.1 2.5E-05 36.7 5.3 46 395-443 26-74 (88)
57 smart00027 EH Eps15 homology d 88.1 0.5 1.1E-05 39.0 3.2 31 414-444 4-34 (96)
58 TIGR00934 2a38euk potassium up 87.9 1.4 3E-05 49.7 7.3 173 166-350 587-784 (800)
59 TIGR00934 2a38euk potassium up 86.9 4 8.6E-05 46.2 10.1 62 291-353 588-662 (800)
60 PF13499 EF-hand_7: EF-hand do 86.7 0.4 8.6E-06 36.3 1.7 24 421-444 1-24 (66)
61 KOG1053 Glutamate-gated NMDA-t 86.6 8.4 0.00018 44.0 12.2 54 311-368 608-665 (1258)
62 cd05022 S-100A13 S-100A13: S-1 86.4 1.6 3.5E-05 36.0 5.2 53 388-443 15-70 (89)
63 KOG4440 NMDA selective glutama 85.9 0.65 1.4E-05 50.5 3.3 79 171-249 578-667 (993)
64 PTZ00183 centrin; Provisional 85.9 2 4.3E-05 37.8 6.0 55 387-444 96-150 (158)
65 COG5126 FRQ1 Ca2+-binding prot 85.7 1.5 3.3E-05 40.2 5.1 54 387-444 98-152 (160)
66 KOG0038 Ca2+-binding kinase in 85.5 1.9 4.2E-05 38.8 5.5 54 390-443 117-172 (189)
67 cd00051 EFh EF-hand, calcium b 85.4 2.8 6.1E-05 29.6 5.7 52 389-444 8-60 (63)
68 PLN02964 phosphatidylserine de 85.3 1.4 3.1E-05 48.9 5.7 51 390-444 188-239 (644)
69 cd05026 S-100Z S-100Z: S-100Z 85.2 2.8 6E-05 34.6 6.1 50 391-443 21-76 (93)
70 COG0168 TrkG Trk-type K+ trans 85.1 13 0.00029 40.2 12.8 46 160-213 171-216 (499)
71 cd00052 EH Eps15 homology doma 85.0 2.9 6.3E-05 31.2 5.7 52 388-444 6-57 (67)
72 PRK12438 hypothetical protein; 84.7 52 0.0011 38.5 17.7 31 324-354 245-275 (991)
73 cd05027 S-100B S-100B: S-100B 84.6 3.1 6.6E-05 34.1 6.1 49 392-444 20-75 (88)
74 KOG1052 Glutamate-gated kainat 84.0 2 4.3E-05 47.8 6.2 83 166-249 345-434 (656)
75 KOG0034 Ca2+/calmodulin-depend 83.8 2.3 5.1E-05 39.9 5.7 53 390-443 113-170 (187)
76 PF02386 TrkH: Cation transpor 83.7 2.4 5.3E-05 43.5 6.3 39 313-351 177-217 (354)
77 cd05023 S-100A11 S-100A11: S-1 82.9 4 8.8E-05 33.5 6.1 51 390-443 19-75 (89)
78 PTZ00184 calmodulin; Provision 81.0 3.8 8.3E-05 35.3 5.7 55 387-444 90-144 (149)
79 PTZ00183 centrin; Provisional 80.8 3.5 7.6E-05 36.2 5.5 52 390-444 62-114 (158)
80 cd00252 SPARC_EC SPARC_EC; ext 80.7 2.7 5.9E-05 36.4 4.5 50 387-443 54-103 (116)
81 KOG0027 Calmodulin and related 80.5 4.4 9.5E-05 36.2 6.0 54 387-443 91-144 (151)
82 KOG0028 Ca2+-binding protein ( 79.9 3.4 7.3E-05 37.9 4.9 49 391-442 116-164 (172)
83 cd00252 SPARC_EC SPARC_EC; ext 79.1 1.8 3.9E-05 37.5 2.9 31 414-444 42-72 (116)
84 COG5126 FRQ1 Ca2+-binding prot 78.9 5 0.00011 36.8 5.9 48 394-444 68-116 (160)
85 PTZ00184 calmodulin; Provision 78.6 4.8 0.0001 34.7 5.6 53 390-444 56-108 (149)
86 KOG3599 Ca2+-modulated nonsele 77.8 1.4E+02 0.003 34.4 18.2 67 289-355 595-664 (798)
87 KOG1053 Glutamate-gated NMDA-t 77.0 5.8 0.00013 45.1 6.6 54 193-250 607-664 (1258)
88 PF01595 DUF21: Domain of unkn 75.7 32 0.00068 31.2 10.4 25 313-337 86-110 (183)
89 KOG4440 NMDA selective glutama 75.6 5.9 0.00013 43.4 6.0 56 311-366 612-667 (993)
90 cd00213 S-100 S-100: S-100 dom 75.5 2.8 6E-05 33.7 2.9 29 416-444 4-34 (88)
91 cd05031 S-100A10_like S-100A10 75.3 8.8 0.00019 31.4 5.9 51 389-443 16-74 (94)
92 KOG0036 Predicted mitochondria 74.8 4.4 9.5E-05 42.3 4.7 50 387-444 57-106 (463)
93 KOG0031 Myosin regulatory ligh 74.4 3 6.5E-05 38.0 3.0 31 414-444 26-56 (171)
94 smart00027 EH Eps15 homology d 72.8 10 0.00022 31.1 5.7 52 388-444 17-68 (96)
95 cd00213 S-100 S-100: S-100 dom 72.6 11 0.00024 30.2 5.8 55 387-444 14-75 (88)
96 KOG1052 Glutamate-gated kainat 72.3 13 0.00029 41.3 8.2 56 311-367 380-435 (656)
97 smart00054 EFh EF-hand, calciu 71.5 2.7 5.9E-05 24.7 1.5 23 422-444 2-24 (29)
98 KOG3614 Ca2+/Mg2+-permeable ca 70.5 1.2E+02 0.0026 36.6 15.2 21 342-362 1018-1039(1381)
99 cd05025 S-100A1 S-100A1: S-100 70.5 12 0.00026 30.4 5.6 52 388-443 16-75 (92)
100 KOG1054 Glutamate-gated AMPA-t 70.0 2.5 5.4E-05 46.0 1.7 55 194-249 594-648 (897)
101 PRK12309 transaldolase/EF-hand 69.7 8.7 0.00019 40.3 5.7 42 387-444 340-381 (391)
102 PLN03223 Polycystin cation cha 67.5 1E+02 0.0022 37.3 13.9 22 411-432 1457-1478(1634)
103 cd05022 S-100A13 S-100A13: S-1 66.7 5.7 0.00012 32.7 2.9 29 416-444 4-33 (89)
104 cd00052 EH Eps15 homology doma 65.6 3.7 8E-05 30.6 1.5 22 423-444 2-23 (67)
105 cd05030 calgranulins Calgranul 65.1 13 0.00028 30.2 4.7 48 394-444 23-75 (88)
106 KOG3676 Ca2+-permeable cation 64.0 34 0.00073 38.8 8.9 57 193-249 584-648 (782)
107 KOG0044 Ca2+ sensor (EF-Hand s 63.5 11 0.00025 35.5 4.6 52 390-444 73-124 (193)
108 PRK11281 hypothetical protein; 63.4 87 0.0019 37.4 12.7 21 339-359 837-857 (1113)
109 cd05025 S-100A1 S-100A1: S-100 63.4 6.9 0.00015 31.8 2.8 28 417-444 6-35 (92)
110 cd05027 S-100B S-100B: S-100B 63.2 7.1 0.00015 31.9 2.8 29 416-444 4-34 (88)
111 cd05031 S-100A10_like S-100A10 61.6 7.4 0.00016 31.8 2.7 28 417-444 5-34 (94)
112 COG3462 Predicted membrane pro 60.1 1.1E+02 0.0024 26.3 9.6 32 396-427 85-116 (117)
113 PRK10929 putative mechanosensi 59.8 56 0.0012 38.9 10.3 24 326-350 821-846 (1109)
114 PF08016 PKD_channel: Polycyst 59.6 1.1E+02 0.0023 32.2 11.7 20 314-333 364-383 (425)
115 cd05026 S-100Z S-100Z: S-100Z 58.6 9.1 0.0002 31.5 2.7 29 416-444 6-36 (93)
116 KOG4223 Reticulocalbin, calume 58.1 14 0.00031 37.4 4.4 56 386-443 168-223 (325)
117 PRK00068 hypothetical protein; 56.3 3.4E+02 0.0073 32.1 15.4 18 196-218 38-55 (970)
118 KOG0377 Protein serine/threoni 56.2 16 0.00034 38.7 4.5 56 387-445 553-612 (631)
119 KOG2302 T-type voltage-gated C 55.6 4.1E+02 0.0088 31.7 15.3 26 342-367 1365-1390(1956)
120 cd05024 S-100A10 S-100A10: A s 53.9 15 0.00032 30.5 3.2 45 396-443 22-71 (91)
121 KOG0031 Myosin regulatory ligh 53.2 44 0.00095 30.6 6.3 64 379-444 62-125 (171)
122 KOG0036 Predicted mitochondria 51.3 24 0.00052 37.1 4.9 53 387-442 88-140 (463)
123 cd00051 EFh EF-hand, calcium b 47.3 15 0.00033 25.7 2.1 23 422-444 2-24 (63)
124 TIGR00774 NhaB Na+/H+ antiport 47.3 1.7E+02 0.0036 31.8 10.4 20 314-334 432-451 (515)
125 KOG0028 Ca2+-binding protein ( 46.6 1.3E+02 0.0029 27.7 8.3 51 391-443 79-129 (172)
126 KOG0037 Ca2+-binding protein, 44.7 40 0.00086 32.5 4.9 46 391-445 104-149 (221)
127 cd05023 S-100A11 S-100A11: S-1 44.3 23 0.00049 29.0 2.9 29 416-444 5-35 (89)
128 KOG4223 Reticulocalbin, calume 43.3 30 0.00065 35.2 4.1 57 387-443 206-264 (325)
129 KOG1054 Glutamate-gated AMPA-t 43.3 28 0.00061 38.2 4.1 55 311-366 594-648 (897)
130 PF07077 DUF1345: Protein of u 42.2 60 0.0013 30.3 5.7 54 188-241 125-178 (180)
131 PF00404 Dockerin_1: Dockerin 42.2 18 0.0004 21.7 1.4 14 430-443 1-14 (21)
132 KOG2568 Predicted membrane pro 41.5 3E+02 0.0066 30.0 11.4 21 220-240 204-224 (518)
133 PLN02964 phosphatidylserine de 41.4 51 0.0011 36.9 5.9 53 387-444 149-203 (644)
134 PF14788 EF-hand_10: EF hand; 40.3 42 0.00091 24.9 3.4 24 421-444 22-45 (51)
135 PF02175 7TM_GPCR_Srb: Serpent 40.0 3.7E+02 0.008 26.3 13.3 41 333-377 162-202 (236)
136 KOG0034 Ca2+/calmodulin-depend 39.1 34 0.00073 32.2 3.5 33 412-444 25-58 (187)
137 PF04120 Iron_permease: Low af 38.4 1.5E+02 0.0033 26.3 7.3 31 407-437 88-118 (132)
138 PF10591 SPARC_Ca_bdg: Secrete 37.1 15 0.00032 31.5 0.8 27 417-443 51-77 (113)
139 cd05029 S-100A6 S-100A6: S-100 36.0 34 0.00073 27.9 2.6 29 416-444 6-36 (88)
140 PRK10929 putative mechanosensi 32.5 1.5E+02 0.0033 35.5 8.1 7 196-202 803-809 (1109)
141 COG1615 Uncharacterized conser 32.4 2.6E+02 0.0056 31.9 9.3 33 205-237 220-252 (885)
142 PF04791 LMBR1: LMBR1-like mem 30.4 3.1E+02 0.0067 29.0 9.6 17 348-364 176-192 (471)
143 PF07077 DUF1345: Protein of u 30.2 59 0.0013 30.4 3.6 47 311-357 131-177 (180)
144 COG1253 TlyC Hemolysins and re 29.7 6.9E+02 0.015 26.3 14.7 20 319-338 101-120 (429)
145 COG1226 Kch Kef-type K+ transp 29.6 46 0.001 29.6 2.8 42 311-352 116-157 (212)
146 KOG2562 Protein phosphatase 2 29.3 48 0.0011 35.3 3.1 57 389-445 359-421 (493)
147 TIGR00870 trp transient-recept 27.6 3.4E+02 0.0073 30.7 9.8 17 412-428 723-739 (743)
148 PF14658 EF-hand_9: EF-hand do 27.2 1.2E+02 0.0026 23.7 4.2 52 388-443 5-59 (66)
149 PF12763 EF-hand_4: Cytoskelet 26.4 31 0.00067 29.3 0.9 17 426-442 49-65 (104)
150 PRK05482 potassium-transportin 26.2 2E+02 0.0043 31.8 7.1 42 193-234 449-492 (559)
151 KOG3901 Transcription initiati 25.2 2.7E+02 0.0059 23.8 6.2 16 415-430 85-100 (109)
152 PRK11098 microcin B17 transpor 24.4 8.7E+02 0.019 25.7 19.7 31 220-250 133-163 (409)
153 PRK02983 lysS lysyl-tRNA synth 24.0 1.3E+03 0.029 27.7 14.1 42 309-350 170-212 (1094)
154 KOG3599 Ca2+-modulated nonsele 23.8 4.1E+02 0.0088 30.8 9.4 83 160-248 590-675 (798)
155 PF08016 PKD_channel: Polycyst 23.7 3.8E+02 0.0081 28.1 8.7 43 162-206 335-377 (425)
156 COG1333 ResB ResB protein requ 23.0 1.7E+02 0.0037 31.5 5.8 21 223-243 57-77 (478)
157 PF02268 TFIIA_gamma_N: Transc 22.9 1.5E+02 0.0033 21.7 3.8 28 401-428 15-42 (49)
158 TIGR00870 trp transient-recept 22.8 1.1E+03 0.024 26.5 13.9 42 326-367 570-617 (743)
159 PF12162 STAT1_TAZ2bind: STAT1 22.3 38 0.00082 20.8 0.5 10 35-44 8-17 (23)
160 KOG2562 Protein phosphatase 2 21.3 82 0.0018 33.7 3.0 48 393-443 327-374 (493)
161 PF04632 FUSC: Fusaric acid re 21.1 8.9E+02 0.019 26.5 11.4 47 315-361 443-489 (650)
162 PF09726 Macoilin: Transmembra 20.5 7.6E+02 0.016 28.1 10.6 13 222-234 72-84 (697)
No 1
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.9e-28 Score=235.11 Aligned_cols=190 Identities=22% Similarity=0.370 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccc---------------------------------------CCCCCCChhhHHHhheee
Q 013211 166 AVVLLILYLSLGVTIYWFNRHNF---------------------------------------TASETHPVVDALYFCIVT 206 (447)
Q Consensus 166 ~~i~l~l~i~~g~~i~~~~~~~~---------------------------------------~~~~~~s~~da~yf~~vt 206 (447)
++++.+.|+++|+.+|-..+.+- ....-|.|..||||+.+.
T Consensus 12 Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYFa~TV 91 (350)
T KOG4404|consen 12 LIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYFATTV 91 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEEEEEE
Confidence 66677899999999997532110 112459999999999999
Q ss_pred eeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcceeeeccchhhHHHH
Q 013211 207 MCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMK 286 (447)
Q Consensus 207 ltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~~r~~~~~~ 286 (447)
+||||||.-.|.|..||+||++|+++||++-.+.+..++..+.... .++++++|+....++ + +..+. --
T Consensus 92 ItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~-ayil~~~r~~~~~r~---~-----~~S~~--~l 160 (350)
T KOG4404|consen 92 ITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFV-AYILRRCRRRLGRRR---W-----DVSVY--NL 160 (350)
T ss_pred EeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccc---C-----CCcHH--HH
Confidence 9999999999999999999999999999999999988888776543 455666653221111 0 00000 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccCCc--------chhHHHHHHHHHHHHHHHHHH
Q 013211 287 VALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSM--------PGRLFASIWLLVSTLAVARAF 358 (447)
Q Consensus 287 l~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~--------~gr~f~ii~il~G~~~va~~~ 358 (447)
+.+.....++.++.|+.+|+.+|+|+|+||+||||+|+|||||||+|+.+. ..+++..+||++|+.+++.++
T Consensus 161 ~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~ 240 (350)
T KOG4404|consen 161 VLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALL 240 (350)
T ss_pred HHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHH
Confidence 233334455567789999999999999999999999999999999998543 457899999999999999998
Q ss_pred HHHHHHHH
Q 013211 359 LYLAEARV 366 (447)
Q Consensus 359 ~~l~~~~~ 366 (447)
+.+.-.+.
T Consensus 241 NllvLrf~ 248 (350)
T KOG4404|consen 241 NLLVLRFM 248 (350)
T ss_pred HHHHHHHH
Confidence 88774443
No 2
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.5e-26 Score=236.29 Aligned_cols=173 Identities=27% Similarity=0.503 Sum_probs=135.6
Q ss_pred cccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHc
Q 013211 186 HNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLR---TIKG 262 (447)
Q Consensus 186 ~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r---~~~~ 262 (447)
........|+|.+|+|||++++||||||+++|.|..||++|++|+++|||++.++++.+++++.+...+...+ ..++
T Consensus 106 ~~~~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~ 185 (433)
T KOG1418|consen 106 DESPDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQR 185 (433)
T ss_pred ccCCCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3344567799999999999999999999999999999999999999999999999999999998877765532 1110
Q ss_pred CCCCCCCC----cceeeeccchhhH---HHHHHHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccccCCCccC
Q 013211 263 GGHKESPG----SYIIDVKKGRMRI---RMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFK 335 (447)
Q Consensus 263 ~~~~~~~~----~~i~~~~~~r~~~---~~~l~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGyGD~~p~ 335 (447)
........ ............. +..+.++++++++++..|+.++...|+|+|++|+||+++|+|||||||++|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~ 265 (433)
T KOG1418|consen 186 DRIRSNLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPR 265 (433)
T ss_pred hhhhhhhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccC
Confidence 00000000 0111111111112 3566677777777888999999999999999999999999999999999999
Q ss_pred Ccchh--------HHHHHHHHHHHHHHHHHH
Q 013211 336 SMPGR--------LFASIWLLVSTLAVARAF 358 (447)
Q Consensus 336 t~~gr--------~f~ii~il~G~~~va~~~ 358 (447)
+..++ .+..+++++|...++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 266 TLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred CCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 98877 689999999999988777
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.53 E-value=3.5e-14 Score=114.31 Aligned_cols=72 Identities=31% Similarity=0.554 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHh---HhccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 295 VLCIGIGVGVMHF---VEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARV 366 (447)
Q Consensus 295 ~~~i~~ga~~~~~---~e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~ 366 (447)
++.+..|+.+++. .|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.+++..++.+++.+.
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 4 LLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344566666666 56799999999999999999999999999999999999999999999999999887654
No 4
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.48 E-value=4e-14 Score=113.96 Aligned_cols=77 Identities=35% Similarity=0.767 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013211 169 LLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYV 248 (447)
Q Consensus 169 ~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l 248 (447)
+++++++.|++.+...+ +.+.|++.||+||+++|+|||||||++|.++.||+++++++++|++++++.++.+.+.+
T Consensus 2 ~~~~~l~~~~~~~~~~~----~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l 77 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISE----GSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHTT----SSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHHH----hcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777776621 24679999999999999999999999999999999999999999999999999888876
Q ss_pred H
Q 013211 249 L 249 (447)
Q Consensus 249 ~ 249 (447)
.
T Consensus 78 ~ 78 (79)
T PF07885_consen 78 T 78 (79)
T ss_dssp H
T ss_pred c
Confidence 4
No 5
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.2e-13 Score=143.21 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcc-----------chhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHH
Q 013211 285 MKVALALGVVVLCIGIGVGVMHFVEKL-----------GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLA 353 (447)
Q Consensus 285 ~~l~l~l~i~~~~i~~ga~~~~~~e~~-----------s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~ 353 (447)
..+...+-+-++++++.+++.|..|.. +|-||+||.++|+|||||||.+|+|..||+++..+.++|+.+
T Consensus 231 ~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSF 310 (654)
T KOG1419|consen 231 KELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISF 310 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHH
Confidence 345444545555666778888888753 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013211 354 VARAFLYLAEARVD 367 (447)
Q Consensus 354 va~~~~~l~~~~~~ 367 (447)
|+..-+.+++-+.-
T Consensus 311 FALPAGILGSGfAL 324 (654)
T KOG1419|consen 311 FALPAGILGSGFAL 324 (654)
T ss_pred Hhcccccccchhhh
Confidence 99888887766543
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.35 E-value=2.6e-12 Score=132.71 Aligned_cols=92 Identities=21% Similarity=0.357 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHH
Q 013211 162 IVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILL 241 (447)
Q Consensus 162 ~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~ 241 (447)
+..+++++.+..+++++++|++|+++-. ....+...++|||++|||||||||++|.|..||+++...++.|+.++++.+
T Consensus 345 lglLllfL~~GI~iFStlvY~~Ek~~~~-~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPI 423 (477)
T KOG3713|consen 345 LGLLLLFLAVGIVIFSTLVYFAEKDEPD-TKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPI 423 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcch
Confidence 3334444445556667778888776533 347889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 013211 242 TGMVSYVLDLQEN 254 (447)
Q Consensus 242 ~~~~~~l~~~~~~ 254 (447)
..+.+.+..-...
T Consensus 424 tiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 424 TIIVNNFSMYYSE 436 (477)
T ss_pred HhHhhhHHHHHHH
Confidence 9998887754433
No 7
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.34 E-value=2.7e-12 Score=132.59 Aligned_cols=57 Identities=28% Similarity=0.417 Sum_probs=51.0
Q ss_pred cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD 367 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~ 367 (447)
.+..-++|||++|||||||||.+|.|..||+++...++.|++++|+.+..+.+.+..
T Consensus 376 tSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~ 432 (477)
T KOG3713|consen 376 TSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSM 432 (477)
T ss_pred ccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHH
Confidence 457889999999999999999999999999999999999999998877776666554
No 8
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.31 E-value=8.6e-12 Score=122.60 Aligned_cols=89 Identities=25% Similarity=0.424 Sum_probs=74.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecC--------CCCchhh
Q 013211 155 PQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRT--------VPTKVFS 226 (447)
Q Consensus 155 ~~~~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t--------~~gr~f~ 226 (447)
...+...++.+...+.++.++.|+.+|.- -|+|+|+||+||||+|+|||||||+|+.. +..++++
T Consensus 153 ~~~S~~~l~~i~~~~~~~~i~~gaa~fs~-------~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~s 225 (350)
T KOG4404|consen 153 WDVSVYNLVLILFTACILLICCGAAMFSS-------VEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFS 225 (350)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhHHHhhc-------ccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHh
Confidence 44556777878888888889999998874 46799999999999999999999999863 4679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 227 ILFVLVGFGFVDILLTGMVSYVLD 250 (447)
Q Consensus 227 i~~~l~Gi~l~~~~~~~~~~~l~~ 250 (447)
++|+++|+.+++.+++.++-.+..
T Consensus 226 f~fIL~Gl~vi~a~~NllvLrf~t 249 (350)
T KOG4404|consen 226 FVFILLGLCVIYALLNLLVLRFMT 249 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988777655543
No 9
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.28 E-value=7.8e-12 Score=129.88 Aligned_cols=91 Identities=24% Similarity=0.386 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhcccc---cCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHH
Q 013211 158 GSQSIVRQAVVLLILYLSLGVTIYWFNRHN---FTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGF 234 (447)
Q Consensus 158 ~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~---~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi 234 (447)
.++.++...++.++..++.+.++|..|.++ -.+.+..+|.||+||.++|+|||||||.+|.|+.||+++..|.++|+
T Consensus 229 H~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligi 308 (654)
T KOG1419|consen 229 HSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGI 308 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHH
Confidence 346777778888888888888999988763 22445678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013211 235 GFVDILLTGMVSYV 248 (447)
Q Consensus 235 ~l~~~~~~~~~~~l 248 (447)
.+|++..+.+++-+
T Consensus 309 SFFALPAGILGSGf 322 (654)
T KOG1419|consen 309 SFFALPAGILGSGF 322 (654)
T ss_pred HHHhcccccccchh
Confidence 99998877777643
No 10
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.22 E-value=5.5e-10 Score=115.90 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhHhc------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 297 CIGIGVGVMHFVEK------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRH 370 (447)
Q Consensus 297 ~i~~ga~~~~~~e~------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~~~ 370 (447)
.++.|++.+++.|+ +++.||+||+++|+|||||||++|.+..||+|+++++++|+++++..++.+....++++.
T Consensus 147 l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l 226 (393)
T PRK10537 147 LLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIRGNL 226 (393)
T ss_pred HHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456665565554 799999999999999999999999999999999999999999998888877665555443
Q ss_pred HHHHHHHhcccchhHHHhhhhccCCCCcChHHHHHHHHHHhC
Q 013211 371 RKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMG 412 (447)
Q Consensus 371 r~~~~~v~~~~~t~~~l~~~did~~g~vs~~ef~~~~L~~~~ 412 (447)
++..+....+.. ..+++---|.....+.+..+|.+.+
T Consensus 227 ~~~~~~~~~~~~-----~k~HvII~G~g~lg~~v~~~L~~~g 263 (393)
T PRK10537 227 KRLVKGRISHMH-----RKDHFIICGHSPLAINTYLGLRQRG 263 (393)
T ss_pred HHHHHhhhhhcc-----cCCeEEEECCChHHHHHHHHHHHCC
Confidence 332221111100 1223333455455566666666554
No 11
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.18 E-value=1.1e-10 Score=121.03 Aligned_cols=110 Identities=20% Similarity=0.314 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013211 169 LLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYV 248 (447)
Q Consensus 169 ~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l 248 (447)
++...++.|++.+++.++++. ...+++.||+||+++|+||+||||++|.|..||+|+++++++|+.++++.++.+...+
T Consensus 143 ~~~~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 143 SITSLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred HHHHHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555554443343343 3468999999999999999999999999999999999999999999999888888766
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCcceeeeccchhh
Q 013211 249 LDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMR 282 (447)
Q Consensus 249 ~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~~r~~ 282 (447)
++...+...+.. +.....+.|++.|+-++..
T Consensus 222 i~~~l~~~~~~~---~~~~~~k~HvII~G~g~lg 252 (393)
T PRK10537 222 IRGNLKRLVKGR---ISHMHRKDHFIICGHSPLA 252 (393)
T ss_pred HHHHHHHHHHhh---hhhcccCCeEEEECCChHH
Confidence 654433333221 2222346889999877653
No 12
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.15 E-value=1.3e-08 Score=115.25 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=51.8
Q ss_pred hhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK 368 (447)
Q Consensus 313 ~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~ 368 (447)
|+.|+||+++|+|||||||++|.|..+++|+++++++|++++++.++.+++.+.+.
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~ 306 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG 306 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44479999999999999999999999999999999999999999999999877653
No 13
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.09 E-value=2.6e-10 Score=129.00 Aligned_cols=92 Identities=26% Similarity=0.443 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCC---------------ChhhHHHhheeeeeeeccceeeecCCCCch
Q 013211 160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETH---------------PVVDALYFCIVTMCTIGYGDITPRTVPTKV 224 (447)
Q Consensus 160 ~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~---------------s~~da~yf~~vtltTIGYGDi~P~t~~gr~ 224 (447)
..+++++++++++..++||++|++..........| .|+.|+||+++|||||||||++|.|..+++
T Consensus 200 ~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i 279 (823)
T PLN03192 200 IRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMI 279 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHH
Confidence 35566677777777788888877653211111122 267799999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 225 FSILFVLVGFGFVDILLTGMVSYVLDL 251 (447)
Q Consensus 225 f~i~~~l~Gi~l~~~~~~~~~~~l~~~ 251 (447)
|+++++++|+.++++.++.+++.+.+.
T Consensus 280 ~~i~~ml~g~~~~a~~ig~i~~li~~~ 306 (823)
T PLN03192 280 FIIFYMLFNLGLTAYLIGNMTNLVVEG 306 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987654
No 14
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.05 E-value=9.5e-11 Score=116.52 Aligned_cols=53 Identities=26% Similarity=0.472 Sum_probs=47.7
Q ss_pred cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAE 363 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~ 363 (447)
-+..|||||+++|||||||||.+|.|..|++...+..+.|++.+|..+-.+.+
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence 46899999999999999999999999999999999999999998876655543
No 15
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.97 E-value=9.1e-11 Score=116.65 Aligned_cols=73 Identities=27% Similarity=0.474 Sum_probs=57.9
Q ss_pred HHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013211 175 SLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYV 248 (447)
Q Consensus 175 ~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l 248 (447)
+++..+|+.+.+ ...+...+..|||||+++|||||||||++|.|..||++..+.++.|+..+++.+..+++.+
T Consensus 374 LFsSavYFAEad-e~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNF 446 (507)
T KOG1545|consen 374 LFSSAVYFAEAD-EPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNF 446 (507)
T ss_pred HHhceeeeeecC-CCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecc
Confidence 333344444433 3345567899999999999999999999999999999999999999998888777666544
No 16
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.90 E-value=5e-10 Score=116.69 Aligned_cols=95 Identities=21% Similarity=0.433 Sum_probs=82.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhhcccc-----cCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHH
Q 013211 155 PQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHN-----FTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILF 229 (447)
Q Consensus 155 ~~~~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~-----~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~ 229 (447)
+..++.+++.++.+++.+++..+.+++.++..+ |.++...+|+++.||.++||+||||||++.+|..||+|.+||
T Consensus 243 ktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvff 322 (1103)
T KOG1420|consen 243 KTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFF 322 (1103)
T ss_pred hccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHH
Confidence 455677888889999999999888898887532 445556789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013211 230 VLVGFGFVDILLTGMVSYVL 249 (447)
Q Consensus 230 ~l~Gi~l~~~~~~~~~~~l~ 249 (447)
++.|++.++..+..+...+-
T Consensus 323 il~glamfasyvpeiielig 342 (1103)
T KOG1420|consen 323 ILGGLAMFASYVPEIIELIG 342 (1103)
T ss_pred HHHHHHHHHhhhHHHHHHHc
Confidence 99999999999888887764
No 17
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=98.77 E-value=7.7e-09 Score=106.44 Aligned_cols=59 Identities=24% Similarity=0.424 Sum_probs=55.5
Q ss_pred ccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 310 KLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK 368 (447)
Q Consensus 310 ~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~ 368 (447)
.|+|.+|+||+++++||||||+++|.|..||+|+++|.++|+.++..+++.+++...+.
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999998777664
No 18
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.68 E-value=4.8e-09 Score=109.47 Aligned_cols=82 Identities=23% Similarity=0.410 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhc-------------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHH
Q 013211 286 KVALALGVVVLCIGIGVGVMHFVEK-------------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTL 352 (447)
Q Consensus 286 ~l~l~l~i~~~~i~~ga~~~~~~e~-------------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~ 352 (447)
++.-++.+++..++.++.+.|.+|+ .+|+++.||-++||+||||||+.-.|..||+|.+++++.|++
T Consensus 249 rl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~gla 328 (1103)
T KOG1420|consen 249 RLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLA 328 (1103)
T ss_pred hHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHH
Confidence 4444555566666677778888874 469999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013211 353 AVARAFLYLAEARVD 367 (447)
Q Consensus 353 ~va~~~~~l~~~~~~ 367 (447)
++|..+.-+.+++-.
T Consensus 329 mfasyvpeiielign 343 (1103)
T KOG1420|consen 329 MFASYVPEIIELIGN 343 (1103)
T ss_pred HHHhhhHHHHHHHcc
Confidence 999777666655543
No 19
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.53 E-value=1.2e-08 Score=102.52 Aligned_cols=79 Identities=24% Similarity=0.488 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 171 ILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD 250 (447)
Q Consensus 171 ~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~ 250 (447)
+..++++.++|+.+.. .......+...||||.++||||.||||++|.|.+||+|..+..+-|+.++++.+..+++.+..
T Consensus 333 MAIIIFATvMfYAEKg-~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSR 411 (632)
T KOG4390|consen 333 MAIIIFATVMFYAEKG-SSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSR 411 (632)
T ss_pred HHHHHHHHHHHhhhcc-ccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhH
Confidence 4456667777776643 344556788999999999999999999999999999999999999999888777766665543
No 20
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.49 E-value=1.5e-06 Score=89.45 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhc--------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHH
Q 013211 288 ALALGVVVLCIGIGVGVMHFVEK--------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFL 359 (447)
Q Consensus 288 ~l~l~i~~~~i~~ga~~~~~~e~--------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~ 359 (447)
..++++.+.++++.+..+...|. .+|+++.|+..+|+-+|||||++|+|..||.++++..++|.++.+..++
T Consensus 255 ~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvA 334 (489)
T KOG3684|consen 255 TVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVA 334 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHH
Confidence 33444445555666777777764 4599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 013211 360 YLAEARVDKR 369 (447)
Q Consensus 360 ~l~~~~~~~~ 369 (447)
.++......+
T Consensus 335 visRKLeLt~ 344 (489)
T KOG3684|consen 335 VIARKLELTK 344 (489)
T ss_pred HHHHHHHHHH
Confidence 9886665433
No 21
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.44 E-value=5.8e-07 Score=98.87 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=51.0
Q ss_pred hhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD 367 (447)
Q Consensus 313 ~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~ 367 (447)
|.-|+||++.|+|||||||..+.+...++|++++|++|++++|+++++++.++..
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 4558999999999999999999999999999999999999999999999877654
No 22
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.41 E-value=6.3e-07 Score=98.58 Aligned_cols=90 Identities=26% Similarity=0.363 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc---------CCC-------CC----C-------ChhhHHHhheeeeeeeccce
Q 013211 162 IVRQAVVLLILYLSLGVTIYWFNRHNF---------TAS-------ET----H-------PVVDALYFCIVTMCTIGYGD 214 (447)
Q Consensus 162 ~v~~~~i~l~l~i~~g~~i~~~~~~~~---------~~~-------~~----~-------s~~da~yf~~vtltTIGYGD 214 (447)
....+.+.+++..+.||++|++..... ... .. + .|..|+||+++||||+|||+
T Consensus 234 ~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~ 313 (727)
T KOG0498|consen 234 AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGL 313 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCc
Confidence 446666777777888888887642111 110 00 1 27889999999999999999
Q ss_pred eeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 215 ITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDL 251 (447)
Q Consensus 215 i~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~ 251 (447)
.+|.+...++|+++++++|+.+++++++++.+++...
T Consensus 314 ~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 314 VHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred cCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 9999999999999999999999999999999998754
No 23
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.30 E-value=1e-07 Score=95.92 Aligned_cols=72 Identities=29% Similarity=0.485 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhc-------cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHH
Q 013211 287 VALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAF 358 (447)
Q Consensus 287 l~l~l~i~~~~i~~ga~~~~~~e~-------~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~ 358 (447)
+..+++-+.+-+++-+.++.+.|+ -+...|||++++||||.||||.+|.|-.|++|..+..+.|+++++..+
T Consensus 324 LGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV 402 (632)
T KOG4390|consen 324 LGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV 402 (632)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence 444444444444444445555553 347889999999999999999999999999999999999998876543
No 24
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.7e-06 Score=89.22 Aligned_cols=83 Identities=23% Similarity=0.348 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013211 167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVS 246 (447)
Q Consensus 167 ~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~ 246 (447)
.+.+.++++.+-..-..|+.+.......+|.+++|+..+|+.+|||||++|.|..||.+|++-+++|..+.+++++.+..
T Consensus 259 vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisR 338 (489)
T KOG3684|consen 259 VFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIAR 338 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHH
Confidence 33444555555444455665544446678999999999999999999999999999999999999999999999888887
Q ss_pred HHH
Q 013211 247 YVL 249 (447)
Q Consensus 247 ~l~ 249 (447)
.+.
T Consensus 339 KLe 341 (489)
T KOG3684|consen 339 KLE 341 (489)
T ss_pred HHH
Confidence 654
No 25
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.13 E-value=6.1e-05 Score=79.69 Aligned_cols=55 Identities=22% Similarity=0.425 Sum_probs=50.9
Q ss_pred hhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD 367 (447)
Q Consensus 313 ~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~ 367 (447)
|+.|+||++.+|||||||++.|.|...++|++..|++|.++-|.+|+.++..+..
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ 478 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ 478 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7789999999999999999999999999999999999999999999888876644
No 26
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.96 E-value=9.2e-06 Score=82.79 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=59.7
Q ss_pred ChHHHHH-HHHHHHHHHHHHHHHHhhhcc--cccCC-----------CCCCChhhHHHhheeeeeeeccce--eeecCCC
Q 013211 158 GSQSIVR-QAVVLLILYLSLGVTIYWFNR--HNFTA-----------SETHPVVDALYFCIVTMCTIGYGD--ITPRTVP 221 (447)
Q Consensus 158 ~~~~~v~-~~~i~l~l~i~~g~~i~~~~~--~~~~~-----------~~~~s~~da~yf~~vtltTIGYGD--i~P~t~~ 221 (447)
+|+..+. .++..++.++++|++.|.+.. ..+.. ....+|.+||+|++.|+||||||. +.|..+.
T Consensus 33 ~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~ 112 (336)
T PF01007_consen 33 SWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPY 112 (336)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHH
T ss_pred CeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcch
Confidence 3544333 344555566666666554321 11111 112589999999999999999998 5677788
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 222 TKVFSILFVLVGFGFVDILLTGMVSYVL 249 (447)
Q Consensus 222 gr~f~i~~~l~Gi~l~~~~~~~~~~~l~ 249 (447)
+-++.++-+++|+.+.++.++.+...+.
T Consensus 113 a~~l~~~q~~~g~l~~a~~~Glvfar~s 140 (336)
T PF01007_consen 113 AIFLVTIQSLVGLLLDAFMTGLVFARFS 140 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999988877766553
No 27
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.85 E-value=8e-05 Score=75.95 Aligned_cols=52 Identities=25% Similarity=0.232 Sum_probs=41.5
Q ss_pred cchhhHHHHHHhhhhccccCC--CccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGD--RAFKSMPGRLFASIWLLVSTLAVARAFLYLA 362 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD--~~p~t~~gr~f~ii~il~G~~~va~~~~~l~ 362 (447)
.+|.+||+|++-|.||||||. +.|..+.+-+++++=.++|+++.+.+++.+-
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvf 136 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVF 136 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999 5677778888899999999999888877665
No 28
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.78 E-value=5.3e-05 Score=80.15 Aligned_cols=55 Identities=24% Similarity=0.584 Sum_probs=51.3
Q ss_pred hhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 196 VVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD 250 (447)
Q Consensus 196 ~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~ 250 (447)
|+.++||.++.|||||||++.|.|...|+|.+..+++|-.+.+.+++.+...+..
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ 478 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ 478 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8899999999999999999999999999999999999999999998888877653
No 29
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.71 E-value=0.0035 Score=67.00 Aligned_cols=56 Identities=13% Similarity=0.248 Sum_probs=46.2
Q ss_pred hccchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 309 EKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEAR 365 (447)
Q Consensus 309 e~~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~ 365 (447)
+|..|+.++||++-|++||| |...|.+....+|..+--++|+.+|+..++.+-..+
T Consensus 400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi 455 (815)
T KOG0499|consen 400 EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVI 455 (815)
T ss_pred CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999 777888877777777777889999998887766544
No 30
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.60 E-value=8.5e-05 Score=77.99 Aligned_cols=63 Identities=22% Similarity=0.453 Sum_probs=52.1
Q ss_pred CCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 191 SETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQE 253 (447)
Q Consensus 191 ~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~ 253 (447)
....+++.++||.++|++||||||.+|.-++.++..++.+.+.+.++.--+..++..+.+.|+
T Consensus 213 ~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~erqk 275 (1087)
T KOG3193|consen 213 GKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSERQK 275 (1087)
T ss_pred CceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 345679999999999999999999999999999999888888887777776666666655443
No 31
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00016 Score=75.96 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=49.0
Q ss_pred cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK 368 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~ 368 (447)
.+.+.++||.++|++||||||.+|.-....+..++.+.+.++++.--+.-++....|+
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~er 273 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSER 273 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999988888887776666666555443
No 32
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=97.37 E-value=0.0013 Score=68.45 Aligned_cols=151 Identities=18% Similarity=0.211 Sum_probs=78.5
Q ss_pred CChhhHHHhheeeeeeeccc--eeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q 013211 194 HPVVDALYFCIVTMCTIGYG--DITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGS 271 (447)
Q Consensus 194 ~s~~da~yf~~vtltTIGYG--Di~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~ 271 (447)
....++.++..++++|.||. |..--++.++++.++.+++|-.--+..-+.=...+.- ..+...+.+++..+..
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~v-l~~~~~~~~~~~~~~~---- 304 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAI-LLKQVYREIRRGIHPR---- 304 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHH-HHHHHHHHHHccCCCc----
Confidence 45789999999999999995 5444466778888877777743221111110111100 0111223333222211
Q ss_pred ceeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHh----ccchhhHHHHHHhhhhccc--cCC-CccCCcchhHHHH
Q 013211 272 YIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVE----KLGWLDSFYLSVMSVTTVG--YGD-RAFKSMPGRLFAS 344 (447)
Q Consensus 272 ~i~~~~~~r~~~~~~l~l~l~i~~~~i~~ga~~~~~~e----~~s~~ds~Yfs~iTlTTVG--yGD-~~p~t~~gr~f~i 344 (447)
.+...+-.....+......+.. ++++.+++++....| +.++.|+++=++..+.||| +|. ...-+..+|++.+
T Consensus 305 ~v~~~~i~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~ 383 (390)
T TIGR00933 305 IIFSRRIGGKTIDKAILISVWS-FFLVFALIFLLSILELISSGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILI 383 (390)
T ss_pred eEEeEEECCeehHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHH
Confidence 1111111111111111111111 111112333333334 7899999999999999999 453 3345677899888
Q ss_pred HHHHHH
Q 013211 345 IWLLVS 350 (447)
Q Consensus 345 i~il~G 350 (447)
+.|++|
T Consensus 384 ~~M~~G 389 (390)
T TIGR00933 384 VLMFIG 389 (390)
T ss_pred HHHHcC
Confidence 888765
No 33
>PRK10750 potassium transporter; Provisional
Probab=96.90 E-value=0.0099 Score=63.73 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=79.2
Q ss_pred ChhhHHHhheeeeeeeccc--eeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcc
Q 013211 195 PVVDALYFCIVTMCTIGYG--DITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSY 272 (447)
Q Consensus 195 s~~da~yf~~vtltTIGYG--Di~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~ 272 (447)
.+.++++.++..+||.||. |+.--++..+++.++.+++|-..-+..-+.=...+.-. .+...+.+++... ++..
T Consensus 304 ~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTaGGIKv~R~~vl-~~~~~~~l~~~~~---P~~V 379 (483)
T PRK10750 304 TLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLL-FKQGNRELKRLVH---PNAV 379 (483)
T ss_pred HHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCcccHHHHHHHHH-HHHHHHHHHHhcC---CCce
Confidence 4667777766678999996 44433445566666666666433322211111111111 1112222322211 1111
Q ss_pred e-eeeccchh--hHHHHHHHHHHHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhccc--cCCC----ccCCcchhHHH
Q 013211 273 I-IDVKKGRM--RIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVG--YGDR----AFKSMPGRLFA 343 (447)
Q Consensus 273 i-~~~~~~r~--~~~~~l~l~l~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVG--yGD~----~p~t~~gr~f~ 343 (447)
. ......+. +....+...+.+.+++++++++++ ..++.+..+|+-=+..++++|| +|.. ..-++.+|++.
T Consensus 380 ~~v~~~gr~i~~~~v~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il 458 (483)
T PRK10750 380 YSIKLGNRALPERILEAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWIL 458 (483)
T ss_pred eeeeECCEECCHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHH
Confidence 1 01111111 111233333334444445555555 5677889999998889999998 4543 34467789999
Q ss_pred HHHHHHH
Q 013211 344 SIWLLVS 350 (447)
Q Consensus 344 ii~il~G 350 (447)
++.|++|
T Consensus 459 ~~~MllG 465 (483)
T PRK10750 459 IANMLFG 465 (483)
T ss_pred HHHHHHH
Confidence 9999887
No 34
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.88 E-value=0.0032 Score=65.99 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCC--------------------hhhHHHhheeeeeeeccceeee
Q 013211 158 GSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHP--------------------VVDALYFCIVTMCTIGYGDITP 217 (447)
Q Consensus 158 ~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s--------------------~~da~yf~~vtltTIGYGDi~P 217 (447)
...++..++..+++++.--||+.|++....--+.+.|. |.-++||+..|+||+| .--.|
T Consensus 126 n~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P 204 (536)
T KOG0500|consen 126 NAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPP 204 (536)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCC
Confidence 33555666666677766667776665432211122233 5679999999999998 34578
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 218 RTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDL 251 (447)
Q Consensus 218 ~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~ 251 (447)
.+..--.|.++-.++|+.+|+.+++.+++.+...
T Consensus 205 ~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 205 VTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred CcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 8899999999999999999999999999988653
No 35
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.72 E-value=0.014 Score=61.42 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=47.1
Q ss_pred hhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 313 WLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK 368 (447)
Q Consensus 313 ~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~ 368 (447)
|.-|+||+..|+||+| --..|.+...-+|.++=.++|++++|.+++.+++.+...
T Consensus 184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 3458999999999998 334678888899999999999999999999999887663
No 36
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.0089 Score=61.10 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=62.3
Q ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHhhhcccc--cCC---C--------CCCChhhHHHhheeeeeeeccceeeecC--CC
Q 013211 158 GS-QSIVRQAVVLLILYLSLGVTIYWFNRHN--FTA---S--------ETHPVVDALYFCIVTMCTIGYGDITPRT--VP 221 (447)
Q Consensus 158 ~~-~~~v~~~~i~l~l~i~~g~~i~~~~~~~--~~~---~--------~~~s~~da~yf~~vtltTIGYGDi~P~t--~~ 221 (447)
.| +.++.....+++.|+++|+++|.+...+ ... . ...+|..||-|++-|=||||||..++.. |.
T Consensus 61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~ 140 (400)
T KOG3827|consen 61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPE 140 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChH
Confidence 45 3344455666677788888777654211 111 1 2347999999999999999999887764 45
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 222 TKVFSILFVLVGFGFVDILLTGMVSYVL 249 (447)
Q Consensus 222 gr~f~i~~~l~Gi~l~~~~~~~~~~~l~ 249 (447)
+-+..++-.++|+.+-+..++.+...+.
T Consensus 141 aI~ll~~Q~I~g~ii~afm~G~i~aKia 168 (400)
T KOG3827|consen 141 AIFLLVLQSILGVIINAFMVGAIFAKIA 168 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777888888777776666655543
No 37
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.27 E-value=0.009 Score=54.27 Aligned_cols=50 Identities=26% Similarity=0.535 Sum_probs=38.6
Q ss_pred CChhhHHHhheeeeeeeccceeeec-----CCCCchhhHHHHH-HHHHHHHHHHHH
Q 013211 194 HPVVDALYFCIVTMCTIGYGDITPR-----TVPTKVFSILFVL-VGFGFVDILLTG 243 (447)
Q Consensus 194 ~s~~da~yf~~vtltTIGYGDi~P~-----t~~gr~f~i~~~l-~Gi~l~~~~~~~ 243 (447)
.+|..|+|+.+.++||.|+||..+. +..+.++.+.+.+ .++.++.++++.
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 5799999999999999999999997 6777777744444 445566665553
No 38
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.19 E-value=0.013 Score=53.21 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=37.8
Q ss_pred cchhhHHHHHHhhhhccccCCCccC-----CcchhHHHHHHHHH-HHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAFK-----SMPGRLFASIWLLV-STLAVARAFL 359 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p~-----t~~gr~f~ii~il~-G~~~va~~~~ 359 (447)
.++..|+||.+.++||.|+||..+. +..+.++.+.++++ ++.+++.+++
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia 198 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA 198 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence 4588999999999999999999997 66778887555555 4455555554
No 39
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=96.09 E-value=0.009 Score=61.38 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=64.2
Q ss_pred ChhhHHHhheeeeeeeccc--eeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCCC-CCC
Q 013211 195 PVVDALYFCIVTMCTIGYG--DITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQE--NYLLRTIKGGGHK-ESP 269 (447)
Q Consensus 195 s~~da~yf~~vtltTIGYG--Di~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~~--~~~~r~~~~~~~~-~~~ 269 (447)
....+.++...+.+|-||. |+.--++..+++.++.+++|-.-.+..-+.=...+.-..+ +.+.+...+.+.. .+.
T Consensus 176 ~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~~~~~~~~~p~~~~~~~~ 255 (354)
T PF02386_consen 176 SKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSIREIKRLIHPGAVSPVRF 255 (354)
T ss_dssp HHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHHHHHHHHH-SSS-----S
T ss_pred HHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhHHHHHHHhcCCCccceee
Confidence 3566788888899999996 4444455667777777777644332211111111111111 1111222211110 000
Q ss_pred CcceeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHhccc-hhhHHHHHHhhhhcccc--CCCcc-CCcc---hhHH
Q 013211 270 GSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLG-WLDSFYLSVMSVTTVGY--GDRAF-KSMP---GRLF 342 (447)
Q Consensus 270 ~~~i~~~~~~r~~~~~~l~l~l~i~~~~i~~ga~~~~~~e~~s-~~ds~Yfs~iTlTTVGy--GD~~p-~t~~---gr~f 342 (447)
.+..+ ..+.-.+....+.+.++.+++++..+...+... +.|+++=++..++|||. |...| -+.. +|++
T Consensus 256 ~~r~i-----~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~v 330 (354)
T PF02386_consen 256 NGRRI-----SEQTVRKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLV 330 (354)
T ss_dssp SS--------TTSHHHHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHH
T ss_pred cceee-----chhhhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHH
Confidence 00000 001111222222233333445555665555544 69999999999999994 55333 2334 8888
Q ss_pred HHHHHHHH
Q 013211 343 ASIWLLVS 350 (447)
Q Consensus 343 ~ii~il~G 350 (447)
.++.|++|
T Consensus 331 li~~M~~G 338 (354)
T PF02386_consen 331 LIFLMLLG 338 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888876
No 40
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=95.91 E-value=0.032 Score=58.14 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=30.9
Q ss_pred chhhHHHHHHhhhhccccC--CCccCCcchhHHHHHHHHHHH
Q 013211 312 GWLDSFYLSVMSVTTVGYG--DRAFKSMPGRLFASIWLLVST 351 (447)
Q Consensus 312 s~~ds~Yfs~iTlTTVGyG--D~~p~t~~gr~f~ii~il~G~ 351 (447)
...++.++...+++|.||. |..--++.++++.++.|++|-
T Consensus 231 ~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg 272 (390)
T TIGR00933 231 ALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGG 272 (390)
T ss_pred HHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcC
Confidence 3788999999999999975 444445567888888888863
No 41
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=95.90 E-value=0.13 Score=55.74 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=37.3
Q ss_pred cchhhHHHHHHhhhhccc--cCCCccCCcchhHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVG--YGDRAFKSMPGRLFASIWLLVSTL 352 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVG--yGD~~p~t~~gr~f~ii~il~G~~ 352 (447)
+++.|.+|=......|+| +|+..+.++.+++..++.|++|=.
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~ 493 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRF 493 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999 677889999999999999998733
No 42
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.21 Score=53.86 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhHhccchhhHHHHHHhhhhcccc--CCCccCCcch------hHHHHHHHHHH
Q 013211 292 GVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGY--GDRAFKSMPG------RLFASIWLLVS 350 (447)
Q Consensus 292 ~i~~~~i~~ga~~~~~~e~~s~~ds~Yfs~iTlTTVGy--GD~~p~t~~g------r~f~ii~il~G 350 (447)
.+.++.++++++.....+..++.|+++=++.+..|||. |-..+.+..+ ++..++.|++|
T Consensus 404 ~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G 470 (499)
T COG0168 404 FLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG 470 (499)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence 33334445566655555544899999999999999995 4444334445 88888888886
No 43
>PRK10750 potassium transporter; Provisional
Probab=95.26 E-value=0.17 Score=54.32 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccc
Q 013211 156 QFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYG 213 (447)
Q Consensus 156 ~~~~~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYG 213 (447)
..+.....+.+..+.+.+.+++++.+++. .-+++||+..++.+++|-||.
T Consensus 175 ~p~i~~ta~~l~~iY~~lT~~~~~ll~~~--------Gm~~fdAi~ha~saisTgGFs 224 (483)
T PRK10750 175 RPRIAETAKTLWLIYVLLTVACALALWFA--------GMDAFDAIGHSFSTIAIGGFS 224 (483)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHhccCcC
Confidence 34456666666666666667777777654 256999999999999999984
No 44
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=95.05 E-value=0.024 Score=49.91 Aligned_cols=58 Identities=10% Similarity=0.268 Sum_probs=44.8
Q ss_pred CChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 194 HPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQ 252 (447)
Q Consensus 194 ~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~~~ 252 (447)
.++.+++|+++.+++. +-++..|.+..+|++.++|.++++.+.+.+.+.+.+.+....
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK 100 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4578899999888876 667899999999999999999999999999999999886443
No 45
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.04 E-value=0.035 Score=42.22 Aligned_cols=58 Identities=22% Similarity=0.403 Sum_probs=43.0
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHH-hhhccCCCCCccChhhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLME 444 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~-F~~ld~~~~G~l~~~dl~~ 444 (447)
+...|.+++|.++..|+....-.......++.+.+..++ |++.|.|++|.|+.+|...
T Consensus 6 F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 6 FKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred HHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 445788999999998876653333344446777655444 9999999999999999864
No 46
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.61 E-value=0.11 Score=53.45 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=38.2
Q ss_pred chhhHHHHHHhhhhccccCCCccCCc--chhHHHHHHHHHHHHHHHHHHHHH
Q 013211 312 GWLDSFYLSVMSVTTVGYGDRAFKSM--PGRLFASIWLLVSTLAVARAFLYL 361 (447)
Q Consensus 312 s~~ds~Yfs~iTlTTVGyGD~~p~t~--~gr~f~ii~il~G~~~va~~~~~l 361 (447)
+|..||-|++-|=||||||-..+... .+.+..++-+++|+.+=+.+++.+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i 163 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAI 163 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999999999999988654 456667777777877766555443
No 47
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=94.58 E-value=0.02 Score=35.80 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=19.9
Q ss_pred HHHHhhhccCCCCCccChhhhhh
Q 013211 422 ICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 422 i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
|.+.|++.|.|++|+|+..|+..
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 45789999999999999999753
No 48
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=94.24 E-value=0.066 Score=48.09 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=44.9
Q ss_pred hhhhccCCCCcChHHHHHHHHHHhCCCCHH--HHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 388 LAADIDNNGFVSKSEYVIYKLKEMGKISEK--DVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~e--dv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
...|.+.+|.++..||....-......+.+ ...++++.|+..|.|++|.||..||..
T Consensus 51 ~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~ 109 (151)
T KOG0027|consen 51 KEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKK 109 (151)
T ss_pred HHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHH
Confidence 345677889999999988765555544443 467888999999999999999999863
No 49
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=93.89 E-value=0.037 Score=35.93 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.0
Q ss_pred HHHHHhhhccCCCCCccChhhhhh
Q 013211 421 QICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 421 ~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
++.+.|++.|.|++|+|+..|+..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~ 24 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKE 24 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHH
Confidence 356789999999999999999865
No 50
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.75 E-value=0.06 Score=57.88 Aligned_cols=58 Identities=28% Similarity=0.414 Sum_probs=49.6
Q ss_pred CCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 192 ETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD 250 (447)
Q Consensus 192 ~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~ 250 (447)
++..|+.++||++-|++||| |.-.|.+...-+|-.+=.++|+.+|++.++.+-+.+..
T Consensus 400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 400 EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45679999999999999999 77788877777777777788999999999999888764
No 51
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.22 E-value=13 Score=41.87 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=33.3
Q ss_pred hhhHHHHHHhhh--hccccCCCccCCcc-----hhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 013211 313 WLDSFYLSVMSV--TTVGYGDRAFKSMP-----GRLFASIWLLV-STLAVARAFLYLAEARV 366 (447)
Q Consensus 313 ~~ds~Yfs~iTl--TTVGyGD~~p~t~~-----gr~f~ii~il~-G~~~va~~~~~l~~~~~ 366 (447)
..|++.-++.|+ .||||||....... +++..++|+++ .+.++-+.++..++-+.
T Consensus 587 ~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~ 648 (782)
T KOG3676|consen 587 PYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYE 648 (782)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 567777666666 79999998765433 55555555444 45555555555554443
No 52
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=91.48 E-value=0.11 Score=33.79 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=19.9
Q ss_pred HHHHHhhhccCCCCCccChhhhhh
Q 013211 421 QICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 421 ~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
++.+.|+..|.|++|+|+.+|+..
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~ 24 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRA 24 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHH
Confidence 356789999999999999999864
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=91.25 E-value=0.31 Score=35.52 Aligned_cols=46 Identities=24% Similarity=0.435 Sum_probs=34.3
Q ss_pred CCCcChHHHHHHHHHHh-CC-CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 395 NGFVSKSEYVIYKLKEM-GK-ISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 395 ~g~vs~~ef~~~~L~~~-~k-i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+|.++..++.... ..+ -+ ++++++. .-|...|.|++|.|+..|...
T Consensus 2 ~G~i~~~~~~~~l-~~~g~~~~s~~e~~---~l~~~~D~~~~G~I~~~EF~~ 49 (54)
T PF13833_consen 2 DGKITREEFRRAL-SKLGIKDLSEEEVD---RLFREFDTDGDGYISFDEFIS 49 (54)
T ss_dssp SSEEEHHHHHHHH-HHTTSSSSCHHHHH---HHHHHHTTSSSSSEEHHHHHH
T ss_pred cCEECHHHHHHHH-HHhCCCCCCHHHHH---HHHHhcccCCCCCCCHHHHHH
Confidence 5667777766654 443 35 7888866 667788999999999999864
No 54
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=90.64 E-value=0.38 Score=42.15 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=41.7
Q ss_pred chhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 312 GWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK 368 (447)
Q Consensus 312 s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~ 368 (447)
++.+++|+++.+++. +-++..|.+..+|++.++|.++++.+.+...+.++...+..
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 367788888777766 66778999999999999999999999999999998776654
No 55
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=90.12 E-value=0.41 Score=45.18 Aligned_cols=59 Identities=25% Similarity=0.452 Sum_probs=40.7
Q ss_pred HhhhhccCCCCcChHHHHH---HHHHHhCC----CCHHHHHHH-HHHhhhccCCCCCccChhhhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVI---YKLKEMGK----ISEKDVMQI-CHKFDRLDTGNCGKITLADLMEA 445 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~---~~L~~~~k----i~~edv~~i-~~~F~~ld~~~~G~l~~~dl~~~ 445 (447)
+.--|.+++|++++.|++. ..+..++. -.++...+. .+-|.+.|.|++|.||.+|..++
T Consensus 106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~ 172 (193)
T KOG0044|consen 106 FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEG 172 (193)
T ss_pred heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence 3446889999999888432 23444453 233333333 44599999999999999998875
No 56
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=88.16 E-value=1.1 Score=36.66 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=34.5
Q ss_pred CCCcChHHHHHHHHH---HhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 395 NGFVSKSEYVIYKLK---EMGKISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 395 ~g~vs~~ef~~~~L~---~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
+|.++..|+....-+ .-.+.+++++.++ |+++|.|++|+|+..|.+
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m---~~~~D~d~dG~Idf~EFv 74 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKL---MEDLDRNKDQEVNFQEYV 74 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHH---HHHhcCCCCCCCcHHHHH
Confidence 678888886554322 2456888888866 667799999999999875
No 57
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=88.11 E-value=0.5 Score=39.01 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 414 ISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 414 i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
++++++..+.+.|+.+|.|++|.|+..|+.+
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~ 34 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKP 34 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 4667777777777777777777777777653
No 58
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=87.90 E-value=1.4 Score=49.73 Aligned_cols=173 Identities=14% Similarity=0.141 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCC----CChhhHHHhheeeeeeeccc--eeeecCCCCchhhHHHHHHHHHHHHH
Q 013211 166 AVVLLILYLSLGVTIYWFNRHNFTASET----HPVVDALYFCIVTMCTIGYG--DITPRTVPTKVFSILFVLVGFGFVDI 239 (447)
Q Consensus 166 ~~i~l~l~i~~g~~i~~~~~~~~~~~~~----~s~~da~yf~~vtltTIGYG--Di~P~t~~gr~f~i~~~l~Gi~l~~~ 239 (447)
+++..++.+++|.+.+++.+.+....+. ..+++|++-++.+ =|.|+- |+.-.+++..++.++.+++|..=++.
T Consensus 587 ll~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~Ptag 665 (800)
T TIGR00934 587 LFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAI 665 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCCccc
Confidence 4445555666777766665432111111 2367787777765 667775 44555677788888887776443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcceeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc---------
Q 013211 240 LLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEK--------- 310 (447)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~~r~~~~~~l~l~l~i~~~~i~~ga~~~~~~e~--------- 310 (447)
.+-. ++...+.... ++ ..+ .+... ... .++.-....+.-.+.+.++++++|.++....|+
T Consensus 666 gIK~-TTvyee~sLg-i~-~~~-g~~~~------~~~-~~rsi~~~~irrqLs~dlw~I~l~~flI~I~E~~~l~~~~~~ 734 (800)
T TIGR00934 666 SIRR-TNVYEEQSLG-LY-NEE-NEEHE------GES-STKSFIGAHLRRQLSFDLWYIFLGLFIICICEGRKIQDPDPP 734 (800)
T ss_pred eeec-eeeeheehee-ee-ecc-CCccc------ccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 1110 0000000000 00 001 11100 000 001001111222233335566677777777774
Q ss_pred -cchhhHHHHHHhhhhccccCCCcc---------CCcchhHHHHHHHHHH
Q 013211 311 -LGWLDSFYLSVMSVTTVGYGDRAF---------KSMPGRLFASIWLLVS 350 (447)
Q Consensus 311 -~s~~ds~Yfs~iTlTTVGyGD~~p---------~t~~gr~f~ii~il~G 350 (447)
.++++-++=++....|||+.--.| -+..||++.++.|+.|
T Consensus 735 ~fs~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G 784 (800)
T TIGR00934 735 NFNVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG 784 (800)
T ss_pred cccHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence 367888888888999999533322 2557888888888775
No 59
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=86.88 E-value=4 Score=46.19 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhHh-------ccc----hhhHHHHHHhhhhccccCCC--ccCCcchhHHHHHHHHHHHHH
Q 013211 291 LGVVVLCIGIGVGVMHFVE-------KLG----WLDSFYLSVMSVTTVGYGDR--AFKSMPGRLFASIWLLVSTLA 353 (447)
Q Consensus 291 l~i~~~~i~~ga~~~~~~e-------~~s----~~ds~Yfs~iTlTTVGyGD~--~p~t~~gr~f~ii~il~G~~~ 353 (447)
+..+++++++|.+++...| +.+ +++|++-++.+ =|-||.-+ .--++...++.++.|++|..=
T Consensus 588 l~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 588 FFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence 3444445567777777776 122 56677766553 66676532 223456677888888887544
No 60
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=86.69 E-value=0.4 Score=36.29 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.6
Q ss_pred HHHHHhhhccCCCCCccChhhhhh
Q 013211 421 QICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 421 ~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
++.+.|+++|.|++|.|+..||..
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~ 24 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRR 24 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHH
Confidence 467899999999999999999874
No 61
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=86.57 E-value=8.4 Score=43.96 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=40.9
Q ss_pred cchhhHHHHHHhhhhccccCCCcc----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAF----KSMPGRLFASIWLLVSTLAVARAFLYLAEARVDK 368 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p----~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~ 368 (447)
.++..|+|.+-..+ |+.-+| ....+|+.+.+|.+++++++|..+++++..++..
T Consensus 608 FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE 665 (1258)
T KOG1053|consen 608 FTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQE 665 (1258)
T ss_pred eehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45777888554333 556555 4557899999999999999999999999766643
No 62
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=86.40 E-value=1.6 Score=35.97 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=37.9
Q ss_pred hhhhc-cCCCCcChHHHHHHHHHHhC-CCCH-HHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 388 LAADI-DNNGFVSKSEYVIYKLKEMG-KISE-KDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 388 ~~~di-d~~g~vs~~ef~~~~L~~~~-ki~~-edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
...|. +.+|.++..|+....-.+.+ ++++ +++. +-++.+|.|++|+|+.+|.+
T Consensus 15 ~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~---~mi~~~D~d~DG~I~F~EF~ 70 (89)
T cd05022 15 HKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLE---EKMKNLDVNQDSKLSFEEFW 70 (89)
T ss_pred HHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHH---HHHHHhCCCCCCCCcHHHHH
Confidence 34456 78899998886554333355 3665 5555 55788999999999999875
No 63
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=85.88 E-value=0.65 Score=50.45 Aligned_cols=79 Identities=15% Similarity=0.392 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhcccc----c-------CCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHH
Q 013211 171 ILYLSLGVTIYWFNRHN----F-------TASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDI 239 (447)
Q Consensus 171 ~l~i~~g~~i~~~~~~~----~-------~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~ 239 (447)
+..+++|..+|.+.+.. | ...+..++..|+||+...+..-|-|.-.|.+--.|++.++|+=+.+++++.
T Consensus 578 ~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVAS 657 (993)
T KOG4440|consen 578 LSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVAS 657 (993)
T ss_pred HHHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehh
Confidence 34455666666665411 1 112346799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 013211 240 LLTGMVSYVL 249 (447)
Q Consensus 240 ~~~~~~~~l~ 249 (447)
..+++..+++
T Consensus 658 YTANLAAFLV 667 (993)
T KOG4440|consen 658 YTANLAAFLV 667 (993)
T ss_pred hhhhhhhhee
Confidence 9999998875
No 64
>PTZ00183 centrin; Provisional
Probab=85.87 E-value=2 Score=37.82 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=41.4
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+...|.+.+|.++..|+..........++++++..+ |..+|.+++|.|+.+|+..
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~---~~~~d~~~~g~i~~~ef~~ 150 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKELGETITDEELQEM---IDEADRNGDGEISEEEFYR 150 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence 445678889999988877665544556888877755 5667889999999998754
No 65
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=85.70 E-value=1.5 Score=40.18 Aligned_cols=54 Identities=24% Similarity=0.431 Sum_probs=41.4
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+..-|.|++|+++..|... .|+.+ .+.+++++. +-++..|.|++|+|+..|..+
T Consensus 98 F~~fD~d~dG~Is~~eL~~-vl~~lge~~~deev~---~ll~~~d~d~dG~i~~~eF~~ 152 (160)
T COG5126 98 FKLFDKDHDGYISIGELRR-VLKSLGERLSDEEVE---KLLKEYDEDGDGEIDYEEFKK 152 (160)
T ss_pred HHHhCCCCCceecHHHHHH-HHHhhcccCCHHHHH---HHHHhcCCCCCceEeHHHHHH
Confidence 4456899999999888544 45554 678888888 456666889999999998865
No 66
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=85.47 E-value=1.9 Score=38.82 Aligned_cols=54 Identities=22% Similarity=0.439 Sum_probs=39.9
Q ss_pred hhccCCCCcChHHHHH-HHHHHhCCCCHHHHHHHHHH-hhhccCCCCCccChhhhh
Q 013211 390 ADIDNNGFVSKSEYVI-YKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLM 443 (447)
Q Consensus 390 ~did~~g~vs~~ef~~-~~L~~~~ki~~edv~~i~~~-F~~ld~~~~G~l~~~dl~ 443 (447)
-|.+.|+++...+... ..-.-.+..+++++..|+++ .++-|.|++|+|+.+|..
T Consensus 117 YDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe 172 (189)
T KOG0038|consen 117 YDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE 172 (189)
T ss_pred eecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH
Confidence 3667888876554211 12233477899999999988 899999999999998863
No 67
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=85.44 E-value=2.8 Score=29.65 Aligned_cols=52 Identities=27% Similarity=0.430 Sum_probs=36.7
Q ss_pred hhhccCCCCcChHHHHHHHHHHh-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 389 AADIDNNGFVSKSEYVIYKLKEM-GKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 389 ~~did~~g~vs~~ef~~~~L~~~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
..|.+.+|.++..++... +... ...+++.+. .-|++.|.+++|.|+..++..
T Consensus 8 ~~d~~~~g~l~~~e~~~~-l~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ef~~ 60 (63)
T cd00051 8 LFDKDGDGTISADELKAA-LKSLGEGLSEEEID---EMIREVDKDGDGKIDFEEFLE 60 (63)
T ss_pred HhCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHH---HHHHHhCCCCCCeEeHHHHHH
Confidence 456778888888886554 4444 455656666 457777889999999988753
No 68
>PLN02964 phosphatidylserine decarboxylase
Probab=85.28 E-value=1.4 Score=48.86 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=39.2
Q ss_pred hhccCCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 390 ADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 390 ~did~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
.|.+.+|.++..||....- .++ ..++++ +.+.|+..|.|++|.|+.+||.+
T Consensus 188 ~D~DgdG~IdfdEFl~lL~-~lg~~~seEE---L~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 188 VDYDEDGQLSFSEFSDLIK-AFGNLVAANK---KEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred hCCCCCCeEcHHHHHHHHH-HhccCCCHHH---HHHHHHHhCCCCCCcCCHHHHHH
Confidence 5778899999999876543 444 345554 55889999999999999999864
No 69
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=85.19 E-value=2.8 Score=34.57 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=33.1
Q ss_pred hccCCCC-cChHHHHHHHHHH-----hCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 391 DIDNNGF-VSKSEYVIYKLKE-----MGKISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 391 did~~g~-vs~~ef~~~~L~~-----~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
+.|.+|. ++..|+....-.+ .++.+++++.++ ++++|.|++|+|+..|..
T Consensus 21 d~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i---~~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 21 GKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKI---MNDLDSNKDNEVDFNEFV 76 (93)
T ss_pred ccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHH---HHHhCCCCCCCCCHHHHH
Confidence 3677874 8888865432222 234466666654 555688999999999875
No 70
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=85.14 E-value=13 Score=40.22 Aligned_cols=46 Identities=13% Similarity=0.319 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccc
Q 013211 160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYG 213 (447)
Q Consensus 160 ~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYG 213 (447)
...++.+..+.+++..++++.|+.. .-++.||++.++.+++|-||-
T Consensus 171 ~~~~~~~~~iy~~~t~l~~~~~~~~--------gm~~~dAi~hs~Sa~~ngGFS 216 (499)
T COG0168 171 KNTAKTLWLIYLLLTILLALAFILA--------GMPLFDAIFHSMSAFNNGGFS 216 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------cCCHHHHHHHHHHHhhcCCCC
Confidence 4444444555555555555555543 246889999999999999985
No 71
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=84.96 E-value=2.9 Score=31.19 Aligned_cols=52 Identities=27% Similarity=0.397 Sum_probs=37.3
Q ss_pred hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
...|.+.+|.++..|+... +...| .+++++..+ |+..|.+++|.|+..|.+.
T Consensus 6 ~~~D~~~~G~i~~~el~~~-l~~~g-~~~~~~~~i---~~~~d~~~~g~i~~~ef~~ 57 (67)
T cd00052 6 RSLDPDGDGLISGDEARPF-LGKSG-LPRSVLAQI---WDLADTDKDGKLDKEEFAI 57 (67)
T ss_pred HHhCCCCCCcCcHHHHHHH-HHHcC-CCHHHHHHH---HHHhcCCCCCcCCHHHHHH
Confidence 3457788899888775443 44555 477776655 6677889999999998764
No 72
>PRK12438 hypothetical protein; Provisional
Probab=84.70 E-value=52 Score=38.53 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=17.4
Q ss_pred hhccccCCCccCCcchhHHHHHHHHHHHHHH
Q 013211 324 VTTVGYGDRAFKSMPGRLFASIWLLVSTLAV 354 (447)
Q Consensus 324 lTTVGyGD~~p~t~~gr~f~ii~il~G~~~v 354 (447)
++.-||-|+...=+.-.+++++-++++++++
T Consensus 245 ~~GAgYTDv~a~LPa~~iL~~ia~i~Av~f~ 275 (991)
T PRK12438 245 FTGAGYTDINAVLPAKLILVAIAVLCAVAFF 275 (991)
T ss_pred EecCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566788877644444455555555554443
No 73
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=84.61 E-value=3.1 Score=34.10 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=34.8
Q ss_pred ccCCC-CcChHHHHHHHHHH-----h-CCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 392 IDNNG-FVSKSEYVIYKLKE-----M-GKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 392 id~~g-~vs~~ef~~~~L~~-----~-~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
.+.+| .++..|+... |.. . ...+++++.++. +++|.|++|+|+.++.+.
T Consensus 20 ~dgdG~~I~~~eL~~l-l~~~~~~~lg~~~~~~~v~~~i---~~~D~n~dG~v~f~eF~~ 75 (88)
T cd05027 20 REGDKHKLKKSELKEL-INNELSHFLEEIKEQEVVDKVM---ETLDSDGDGECDFQEFMA 75 (88)
T ss_pred cCCCcCEECHHHHHHH-HHHHhHHHhcCCCCHHHHHHHH---HHhCCCCCCcCcHHHHHH
Confidence 56788 4888876544 344 3 446777788554 466999999999998763
No 74
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=84.03 E-value=2 Score=47.78 Aligned_cols=83 Identities=12% Similarity=0.317 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccc-cCC------CCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHH
Q 013211 166 AVVLLILYLSLGVTIYWFNRHN-FTA------SETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVD 238 (447)
Q Consensus 166 ~~i~l~l~i~~g~~i~~~~~~~-~~~------~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~ 238 (447)
.+.++++++++|+++|.+++.. ... ...|+...++|+++.++..-|-+ ..|.+..+|++..+|.++++.+..
T Consensus 345 W~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~s 423 (656)
T KOG1052|consen 345 WLLILASLLLVGLLLWILERLSPYELPPRQIVTSLFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILIS 423 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccceeEeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHH
Confidence 4444555666777777766511 111 22456666778887777777655 899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 013211 239 ILLTGMVSYVL 249 (447)
Q Consensus 239 ~~~~~~~~~l~ 249 (447)
...+.+.+.+.
T Consensus 424 sYTa~L~a~Lt 434 (656)
T KOG1052|consen 424 SYTANLTAFLT 434 (656)
T ss_pred HHHHHHHHHhc
Confidence 99998888774
No 75
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=83.82 E-value=2.3 Score=39.94 Aligned_cols=53 Identities=34% Similarity=0.605 Sum_probs=37.7
Q ss_pred hhccCCCCcChHHHHHHHHHHh-C-CC--CHHHHHHHHHH-hhhccCCCCCccChhhhh
Q 013211 390 ADIDNNGFVSKSEYVIYKLKEM-G-KI--SEKDVMQICHK-FDRLDTGNCGKITLADLM 443 (447)
Q Consensus 390 ~did~~g~vs~~ef~~~~L~~~-~-ki--~~edv~~i~~~-F~~ld~~~~G~l~~~dl~ 443 (447)
-|.+.+|+++..|...- +..+ + .. +++.+.+|.++ |.+-|.|++|+|+.+|-.
T Consensus 113 YD~~~~G~I~reel~~i-v~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~ 170 (187)
T KOG0034|consen 113 YDLDGDGFISREELKQI-LRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFC 170 (187)
T ss_pred hcCCCCCcCcHHHHHHH-HHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 47788999887774332 2222 2 23 36777777766 999999999999998753
No 76
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=83.69 E-value=2.4 Score=43.48 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=20.6
Q ss_pred hhhHHHHHHhhhhccccCCCcc--CCcchhHHHHHHHHHHH
Q 013211 313 WLDSFYLSVMSVTTVGYGDRAF--KSMPGRLFASIWLLVST 351 (447)
Q Consensus 313 ~~ds~Yfs~iTlTTVGyGD~~p--~t~~gr~f~ii~il~G~ 351 (447)
..++.++...+.+|-||.-... -++..+++.++.|++|-
T Consensus 177 ~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg 217 (354)
T PF02386_consen 177 KRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGG 217 (354)
T ss_dssp HHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S
T ss_pred HHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcC
Confidence 4557778888999999864433 34455667777777653
No 77
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=82.91 E-value=4 Score=33.47 Aligned_cols=51 Identities=18% Similarity=0.388 Sum_probs=34.6
Q ss_pred hhccCCC-CcChHHHHHHHHHHh-----CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 390 ADIDNNG-FVSKSEYVIYKLKEM-----GKISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 390 ~did~~g-~vs~~ef~~~~L~~~-----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
.+.++++ .+++.|+....-.+. .+.+++++.++ +.++|.|++|+|+..+.+
T Consensus 19 ~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~l---l~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 19 AGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRM---MKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred hccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHH---HHHcCCCCCCcCcHHHHH
Confidence 3455554 788888655533331 35566777754 567789999999999875
No 78
>PTZ00184 calmodulin; Provisional
Probab=80.98 E-value=3.8 Score=35.34 Aligned_cols=55 Identities=24% Similarity=0.386 Sum_probs=39.2
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+...|.+.+|.++..++........-.++++++..+ |++.|.+++|+|+..|...
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~---~~~~d~~~~g~i~~~ef~~ 144 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEM---IREADVDGDGQINYEEFVK 144 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHH---HHhcCCCCCCcCcHHHHHH
Confidence 444577888998888875543332234677777755 6677889999999988753
No 79
>PTZ00183 centrin; Provisional
Probab=80.75 E-value=3.5 Score=36.18 Aligned_cols=52 Identities=25% Similarity=0.366 Sum_probs=37.7
Q ss_pred hhccCCCCcChHHHHHHHHHH-hCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 390 ADIDNNGFVSKSEYVIYKLKE-MGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 390 ~did~~g~vs~~ef~~~~L~~-~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
.|.+.+|.++..||+...... ..+..++ .+.+.|..+|.+++|.|+..|+..
T Consensus 62 ~d~~~~g~i~~~eF~~~~~~~~~~~~~~~---~l~~~F~~~D~~~~G~i~~~e~~~ 114 (158)
T PTZ00183 62 VDKDGSGKIDFEEFLDIMTKKLGERDPRE---EILKAFRLFDDDKTGKISLKNLKR 114 (158)
T ss_pred hCCCCCCcEeHHHHHHHHHHHhcCCCcHH---HHHHHHHHhCCCCCCcCcHHHHHH
Confidence 466788989999987653332 2333333 456779999999999999999863
No 80
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=80.71 E-value=2.7 Score=36.38 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=34.2
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
+...|.+++|.++..|..-.. ++ ..++-+ .+-|++.|.|++|.||.++..
T Consensus 54 F~~lD~d~DG~Ls~~EL~~~~---l~-~~e~~~---~~f~~~~D~n~Dg~IS~~Ef~ 103 (116)
T cd00252 54 FNQLDGNYDGKLSHHELAPIR---LD-PNEHCI---KPFFESCDLDKDGSISLDEWC 103 (116)
T ss_pred HHHHCCCCCCcCCHHHHHHHH---cc-chHHHH---HHHHHHHCCCCCCCCCHHHHH
Confidence 456788999999998855432 11 112333 355778899999999998853
No 81
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=80.51 E-value=4.4 Score=36.18 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=43.5
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
+...|.+++|+++..|+.......-.+.+.+++. .-+++.|.|++|.++..+.+
T Consensus 91 F~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~---~mi~~~d~d~dg~i~f~ef~ 144 (151)
T KOG0027|consen 91 FRVFDKDGDGFISASELKKVLTSLGEKLTDEECK---EMIREVDVDGDGKVNFEEFV 144 (151)
T ss_pred HHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHH---HHHHhcCCCCCCeEeHHHHH
Confidence 4557889999999999888877778888877777 55666788999999887654
No 82
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=79.85 E-value=3.4 Score=37.86 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=20.3
Q ss_pred hccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhh
Q 013211 391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL 442 (447)
Q Consensus 391 did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl 442 (447)
|.|.+|.++..++-.-.-..-..++++++.++.+++ |.|++|.++-.+.
T Consensus 116 D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEA---d~d~dgevneeEF 164 (172)
T KOG0028|consen 116 DDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEA---DRDGDGEVNEEEF 164 (172)
T ss_pred cccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHh---cccccccccHHHH
Confidence 344444444444333222222334445444333322 4455555544443
No 83
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=79.13 E-value=1.8 Score=37.50 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 414 ISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 414 i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+..+....+.-.|..+|.|++|.|+.+||..
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~ 72 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAP 72 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence 3567778899999999999999999999864
No 84
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=78.95 E-value=5 Score=36.78 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=35.0
Q ss_pred CCCCcChHHHHHHHHHHhC-CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 394 NNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 394 ~~g~vs~~ef~~~~L~~~~-ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+.+.++-.+|+..+=...+ ...+|+ +...|+..|.||+|+|+..+|..
T Consensus 68 ~~~~idf~~Fl~~ms~~~~~~~~~Ee---l~~aF~~fD~d~dG~Is~~eL~~ 116 (160)
T COG5126 68 GNETVDFPEFLTVMSVKLKRGDKEEE---LREAFKLFDKDHDGYISIGELRR 116 (160)
T ss_pred CCCccCHHHHHHHHHHHhccCCcHHH---HHHHHHHhCCCCCceecHHHHHH
Confidence 3466788888776554443 233444 45999999999999999999864
No 85
>PTZ00184 calmodulin; Provisional
Probab=78.56 E-value=4.8 Score=34.70 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=37.8
Q ss_pred hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
.|.+.+|.++-.+|+............ -..+...|+..|.+++|.|+..|+..
T Consensus 56 ~d~~~~g~i~~~ef~~~l~~~~~~~~~--~~~~~~~F~~~D~~~~g~i~~~e~~~ 108 (149)
T PTZ00184 56 VDADGNGTIDFPEFLTLMARKMKDTDS--EEEIKEAFKVFDRDGNGFISAAELRH 108 (149)
T ss_pred cCcCCCCcCcHHHHHHHHHHhccCCcH--HHHHHHHHHhhCCCCCCeEeHHHHHH
Confidence 466778889998887764443332222 23456779999999999999999853
No 86
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.83 E-value=1.4e+02 Score=34.42 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcc-chhhHHHHHHhhhhccccCCCccCC--cchhHHHHHHHHHHHHHHH
Q 013211 289 LALGVVVLCIGIGVGVMHFVEKL-GWLDSFYLSVMSVTTVGYGDRAFKS--MPGRLFASIWLLVSTLAVA 355 (447)
Q Consensus 289 l~l~i~~~~i~~ga~~~~~~e~~-s~~ds~Yfs~iTlTTVGyGD~~p~t--~~gr~f~ii~il~G~~~va 355 (447)
..+.++++++..+.+++....++ +=.-.+.=++.|+.-.-.||..|.+ ..+|++.+++..+-+.+++
T Consensus 595 f~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t~~~~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v~ 664 (798)
T KOG3599|consen 595 FALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVTLLRYILGDFCPAEIFHANRILGPLLFLTYVFVVS 664 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHHHHHHHhccCCccccccCCchHHHHHHHHHHHHHH
Confidence 33333444444444444444331 1123445555666555578887753 4566666665555444433
No 87
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=77.02 E-value=5.8 Score=45.15 Aligned_cols=54 Identities=7% Similarity=0.349 Sum_probs=43.7
Q ss_pred CCChhhHHHhheeeeeeeccceeeec----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 193 THPVVDALYFCIVTMCTIGYGDITPR----TVPTKVFSILFVLVGFGFVDILLTGMVSYVLD 250 (447)
Q Consensus 193 ~~s~~da~yf~~vtltTIGYGDi~P~----t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~ 250 (447)
..++..|+|.+...+ |++.||. .+.+|+...+|+++++.+.+...+++..+++.
T Consensus 607 ~FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 607 SFTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred ceehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788888766544 5666654 56689999999999999999999999998864
No 88
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=75.73 E-value=32 Score=31.20 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=16.3
Q ss_pred hhhHHHHHHhhhhccccCCCccCCc
Q 013211 313 WLDSFYLSVMSVTTVGYGDRAFKSM 337 (447)
Q Consensus 313 ~~ds~Yfs~iTlTTVGyGD~~p~t~ 337 (447)
+...+.+.+.++..+-+|+..|..-
T Consensus 86 ~~~~~~~~~~~~l~lif~e~lPk~l 110 (183)
T PF01595_consen 86 WALLIAFLIITLLILIFGEILPKAL 110 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666777899988653
No 89
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=75.63 E-value=5.9 Score=43.43 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=50.4
Q ss_pred cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARV 366 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~ 366 (447)
.++..|+||+--.+..-|-|.-+|.+-..|++.++|.-+.++++|...++++...+
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 67889999998888899999999999999999999999999999999988885543
No 90
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=75.49 E-value=2.8 Score=33.74 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhccC--CCCCccChhhhhh
Q 013211 416 EKDVMQICHKFDRLDT--GNCGKITLADLME 444 (447)
Q Consensus 416 ~edv~~i~~~F~~ld~--~~~G~l~~~dl~~ 444 (447)
++++..+.+.|..+|. |++|.|+.+++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~ 34 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKE 34 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHH
Confidence 4778889999999999 8999999999864
No 91
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=75.26 E-value=8.8 Score=31.40 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=34.8
Q ss_pred hhhc-cC-CCCcChHHHHHHHHHH-h-----CCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 389 AADI-DN-NGFVSKSEYVIYKLKE-M-----GKISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 389 ~~di-d~-~g~vs~~ef~~~~L~~-~-----~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
..|. +. +|.++..|.... +.. . .+.+++++..+. +++|.+++|.|+.+|..
T Consensus 16 ~~D~~dg~dG~Is~~El~~~-l~~~~g~~lg~~~s~~ei~~~~---~~~D~~~dg~I~f~eF~ 74 (94)
T cd05031 16 RYAGKDGDKNTLSRKELKKL-MEKELSEFLKNQKDPMAVDKIM---KDLDQNRDGKVNFEEFV 74 (94)
T ss_pred HHhccCCCCCeECHHHHHHH-HHHHhHHHhhccccHHHHHHHH---HHhCCCCCCcCcHHHHH
Confidence 3454 65 699888886543 332 2 256777777555 45688999999999876
No 92
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=74.83 E-value=4.4 Score=42.34 Aligned_cols=50 Identities=26% Similarity=0.411 Sum_probs=30.7
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+.+.|.+.||.++-.||..|.... -.++.+-|.++|.+++|.|+..|+.+
T Consensus 57 ~~~~d~~~dg~vDy~eF~~Y~~~~--------E~~l~~~F~~iD~~hdG~i~~~Ei~~ 106 (463)
T KOG0036|consen 57 FSAMDANRDGRVDYSEFKRYLDNK--------ELELYRIFQSIDLEHDGKIDPNEIWR 106 (463)
T ss_pred HHhcccCcCCcccHHHHHHHHHHh--------HHHHHHHHhhhccccCCccCHHHHHH
Confidence 445666777777777776662211 12344567777777777777776654
No 93
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=74.42 E-value=3 Score=37.98 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 414 ISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 414 i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
.++.+|.+.+++|+-+|+|++|.|+..||..
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d 56 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRD 56 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcccHHHHHH
Confidence 3678999999999999999999999999964
No 94
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=72.80 E-value=10 Score=31.13 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=37.5
Q ss_pred hhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 388 LAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 388 ~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
...|.+.+|.++..++... +... .++++++..+ |...|.+++|.|+..+...
T Consensus 17 ~~~D~d~~G~Is~~el~~~-l~~~-~~~~~ev~~i---~~~~d~~~~g~I~~~eF~~ 68 (96)
T smart00027 17 RSLDKNQDGTVTGAQAKPI-LLKS-GLPQTLLAKI---WNLADIDNDGELDKDEFAL 68 (96)
T ss_pred HHhCCCCCCeEeHHHHHHH-HHHc-CCCHHHHHHH---HHHhcCCCCCCcCHHHHHH
Confidence 4457788898888775443 4444 4788887765 4556889999999998764
No 95
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=72.62 E-value=11 Score=30.17 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=36.4
Q ss_pred Hhhhhc--cCCCCcChHHHHHHHHHHhCC-----CCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 387 FLAADI--DNNGFVSKSEYVIYKLKEMGK-----ISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 387 l~~~di--d~~g~vs~~ef~~~~L~~~~k-----i~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+...|. +.+|.++..|+....-...+. .+++++.++ +...|.+++|.|+.++...
T Consensus 14 F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i---~~~~d~~~~g~I~f~eF~~ 75 (88)
T cd00213 14 FHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI---MKDLDVNKDGKVDFQEFLV 75 (88)
T ss_pred HHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH---HHHhccCCCCcCcHHHHHH
Confidence 344567 688998888765442122332 357777765 4555889999999998753
No 96
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=72.28 E-value=13 Score=41.27 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=44.4
Q ss_pred cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVD 367 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~ 367 (447)
|+...++|+++.++..-|-+ ..|.+..+|++..+|.++++.+.+...+.++.....
T Consensus 380 ~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 380 FSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV 435 (656)
T ss_pred eecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444667777767666644 899999999999999999999999888888876654
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=71.47 E-value=2.7 Score=24.75 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.1
Q ss_pred HHHHhhhccCCCCCccChhhhhh
Q 013211 422 ICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 422 i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+.+-|+..|.+++|.|+..|+..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~ 24 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKD 24 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHH
Confidence 45678889999999999998764
No 98
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.50 E-value=1.2e+02 Score=36.57 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=9.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHH
Q 013211 342 FASIWLLV-STLAVARAFLYLA 362 (447)
Q Consensus 342 f~ii~il~-G~~~va~~~~~l~ 362 (447)
+.++|+++ .++++-..++.+.
T Consensus 1018 Ll~~yLLv~nILL~NLLIA~Fn 1039 (1381)
T KOG3614|consen 1018 LLVIYLLVTNILLVNLLIAMFS 1039 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 4555544444444
No 99
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=70.46 E-value=12 Score=30.37 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=35.0
Q ss_pred hhhh-ccCCCC-cChHHHHHHHHH-HhC-----CCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 388 LAAD-IDNNGF-VSKSEYVIYKLK-EMG-----KISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 388 ~~~d-id~~g~-vs~~ef~~~~L~-~~~-----ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
...| .+.+|. ++..|+... |. +.| ..+++++.++.+ .+|.|++|.|+.++..
T Consensus 16 ~~fDd~dg~G~~Is~~El~~~-l~~~lg~~~~~~~s~~~v~~i~~---~~D~d~~G~I~f~eF~ 75 (92)
T cd05025 16 HAHSGKEGDKYKLSKKELKDL-LQTELSDFLDAQKDADAVDKIMK---ELDENGDGEVDFQEFV 75 (92)
T ss_pred HHHhcccCCCCeECHHHHHHH-HHHHHHHHccCCCCHHHHHHHHH---HHCCCCCCcCcHHHHH
Confidence 3344 778884 888775443 33 233 246777776555 5688999999998875
No 100
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=70.03 E-value=2.5 Score=45.96 Aligned_cols=55 Identities=13% Similarity=0.388 Sum_probs=48.7
Q ss_pred CChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 194 HPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVL 249 (447)
Q Consensus 194 ~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~ 249 (447)
.+.++++||+...+.-=| -|+.|.+.-||+..-.|.++-+++++...+++..++.
T Consensus 594 FgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 594 FGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred chhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 468899999988876666 4999999999999999999999999999999988774
No 101
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=69.73 E-value=8.7 Score=40.27 Aligned_cols=42 Identities=33% Similarity=0.552 Sum_probs=33.5
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+...|.+.+|.++..|+.. +..-|+.+|.|++|+|+.+|+..
T Consensus 340 F~~~D~dgdG~Is~~E~~~----------------~~~~F~~~D~d~DG~Is~eEf~~ 381 (391)
T PRK12309 340 FRLYDLDGDGFITREEWLG----------------SDAVFDALDLNHDGKITPEEMRA 381 (391)
T ss_pred HHHhCCCCCCcCcHHHHHH----------------HHHHHHHhCCCCCCCCcHHHHHH
Confidence 4456888899988888731 34569999999999999999864
No 102
>PLN03223 Polycystin cation channel protein; Provisional
Probab=67.48 E-value=1e+02 Score=37.33 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=14.6
Q ss_pred hCCCCHHHHHHHHHHhhhccCC
Q 013211 411 MGKISEKDVMQICHKFDRLDTG 432 (447)
Q Consensus 411 ~~ki~~edv~~i~~~F~~ld~~ 432 (447)
...+.+..+...++++.--+.|
T Consensus 1457 ~~~i~~~~~~~~lr~w~ge~~~ 1478 (1634)
T PLN03223 1457 KNHIPEARVRRQLRIWKGENPD 1478 (1634)
T ss_pred cccCCcHHHHHHHHHhcCCCCC
Confidence 3567888888777777544433
No 103
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=66.75 E-value=5.7 Score=32.67 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhccC-CCCCccChhhhhh
Q 013211 416 EKDVMQICHKFDRLDT-GNCGKITLADLME 444 (447)
Q Consensus 416 ~edv~~i~~~F~~ld~-~~~G~l~~~dl~~ 444 (447)
++-+..+.+.|++.|. +++|+|+.+||..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ 33 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQE 33 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHH
Confidence 4667889999999999 9999999999863
No 104
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=65.61 E-value=3.7 Score=30.59 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.0
Q ss_pred HHHhhhccCCCCCccChhhhhh
Q 013211 423 CHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 423 ~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
.+.|..+|.+++|.|+.+|+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~ 23 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARP 23 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHH
Confidence 4679999999999999999864
No 105
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=65.06 E-value=13 Score=30.20 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=30.4
Q ss_pred CCCCcChHHHHHHHHHHhCC-CC----HHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 394 NNGFVSKSEYVIYKLKEMGK-IS----EKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 394 ~~g~vs~~ef~~~~L~~~~k-i~----~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
.+|.++..|+....-...+. ++ ++++..+. ++.|.+++|.|+..|...
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~---~~~D~d~dG~I~f~eF~~ 75 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIF---EDLDTNQDGQLSFEEFLV 75 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHH---HHcCCCCCCcCcHHHHHH
Confidence 45667777654332223322 33 67777555 555889999999998763
No 106
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.02 E-value=34 Score=38.76 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=33.8
Q ss_pred CCChhhHHHhheeee--eeeccceeeecCCC-----CchhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 013211 193 THPVVDALYFCIVTM--CTIGYGDITPRTVP-----TKVFSILFVL-VGFGFVDILLTGMVSYVL 249 (447)
Q Consensus 193 ~~s~~da~yf~~vtl--tTIGYGDi~P~t~~-----gr~f~i~~~l-~Gi~l~~~~~~~~~~~l~ 249 (447)
..+..|++.-++.++ +||||||..-.... ++++.++|++ +-|.++-++++.+++...
T Consensus 584 m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~ 648 (782)
T KOG3676|consen 584 MCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYE 648 (782)
T ss_pred cCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345667655444444 79999998765443 4555555544 345555666666666543
No 107
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=63.45 E-value=11 Score=35.53 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=40.5
Q ss_pred hhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 390 ~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
-|.+.+|.++-.||+...-....-..++.+. =.|+--|.|++|.|+..++.+
T Consensus 73 fD~~~dg~i~F~Efi~als~~~rGt~eekl~---w~F~lyD~dgdG~It~~Eml~ 124 (193)
T KOG0044|consen 73 FDKNKDGTIDFLEFICALSLTSRGTLEEKLK---WAFRLYDLDGDGYITKEEMLK 124 (193)
T ss_pred hcccCCCCcCHHHHHHHHHHHcCCcHHHHhh---hhheeecCCCCceEcHHHHHH
Confidence 4678899999999888865555555555555 349999999999999998753
No 108
>PRK11281 hypothetical protein; Provisional
Probab=63.44 E-value=87 Score=37.42 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 013211 339 GRLFASIWLLVSTLAVARAFL 359 (447)
Q Consensus 339 gr~f~ii~il~G~~~va~~~~ 359 (447)
+.++.++.+++...+++..+.
T Consensus 837 ~~Ll~allIl~i~~~l~r~l~ 857 (1113)
T PRK11281 837 GNLLFALIILVVTYVLVRNLP 857 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443334443333
No 109
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=63.41 E-value=6.9 Score=31.85 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhcc-CCCCC-ccChhhhhh
Q 013211 417 KDVMQICHKFDRLD-TGNCG-KITLADLME 444 (447)
Q Consensus 417 edv~~i~~~F~~ld-~~~~G-~l~~~dl~~ 444 (447)
.-+..+.+.|+..| .+++| +|+..||..
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~ 35 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKD 35 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHH
Confidence 45567889999997 99999 599998864
No 110
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=63.22 E-value=7.1 Score=31.91 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhcc-CCCCC-ccChhhhhh
Q 013211 416 EKDVMQICHKFDRLD-TGNCG-KITLADLME 444 (447)
Q Consensus 416 ~edv~~i~~~F~~ld-~~~~G-~l~~~dl~~ 444 (447)
++-+..+.+.|+..| .|++| .|+.+||..
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ 34 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKE 34 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHH
Confidence 466788999999998 69999 599999853
No 111
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=61.61 E-value=7.4 Score=31.83 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhccC-CC-CCccChhhhhh
Q 013211 417 KDVMQICHKFDRLDT-GN-CGKITLADLME 444 (447)
Q Consensus 417 edv~~i~~~F~~ld~-~~-~G~l~~~dl~~ 444 (447)
+....+.+.|+..|. |+ +|+|+..||..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~ 34 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKK 34 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHH
Confidence 345678899999997 87 79999999874
No 112
>COG3462 Predicted membrane protein [Function unknown]
Probab=60.12 E-value=1.1e+02 Score=26.25 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.7
Q ss_pred CCcChHHHHHHHHHHhCCCCHHHHHHHHHHhh
Q 013211 396 GFVSKSEYVIYKLKEMGKISEKDVMQICHKFD 427 (447)
Q Consensus 396 g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~ 427 (447)
...|++++++.+=...|.++||+-..+.+..+
T Consensus 85 e~~sRA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 85 ERGSRAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred ccccHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 34589999998888999999999998877654
No 113
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.81 E-value=56 Score=38.92 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=10.4
Q ss_pred ccccCCC-ccCCcchhHH-HHHHHHHH
Q 013211 326 TVGYGDR-AFKSMPGRLF-ASIWLLVS 350 (447)
Q Consensus 326 TVGyGD~-~p~t~~gr~f-~ii~il~G 350 (447)
|++-|+. .|.|. +.++ +++.+++|
T Consensus 821 ~~~g~~~~~~itl-~~ll~AllIliv~ 846 (1109)
T PRK10929 821 TVQGVESLQPITL-GSVLIAILVFIIT 846 (1109)
T ss_pred eeccccceeeeeH-HHHHHHHHHHHHH
Confidence 3443443 45554 4444 44444444
No 114
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=59.64 E-value=1.1e+02 Score=32.17 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=9.5
Q ss_pred hhHHHHHHhhhhccccCCCc
Q 013211 314 LDSFYLSVMSVTTVGYGDRA 333 (447)
Q Consensus 314 ~ds~Yfs~iTlTTVGyGD~~ 333 (447)
+.++.-++.|+...-.||..
T Consensus 364 f~s~~~s~~tl~~~l~g~~~ 383 (425)
T PF08016_consen 364 FSSFSSSLVTLFRMLLGDFD 383 (425)
T ss_pred cCCHHHHHHHHHHHhcCCCc
Confidence 34455555555444445543
No 115
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=58.56 E-value=9.1 Score=31.46 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhcc-CCCCC-ccChhhhhh
Q 013211 416 EKDVMQICHKFDRLD-TGNCG-KITLADLME 444 (447)
Q Consensus 416 ~edv~~i~~~F~~ld-~~~~G-~l~~~dl~~ 444 (447)
|+.+..+.+.|++.| .|++| +|+..||..
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ 36 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKE 36 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHH
Confidence 356778889999999 67998 599999864
No 116
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.09 E-value=14 Score=37.40 Aligned_cols=56 Identities=25% Similarity=0.431 Sum_probs=42.0
Q ss_pred HHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 386 EFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 386 ~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
.+.++|.|.+|..+..||.....-+. .....---|.+..+.+|.|++|+|+..+.+
T Consensus 168 rFk~AD~d~dg~lt~EEF~aFLHPEe--~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfi 223 (325)
T KOG4223|consen 168 RFKAADQDGDGSLTLEEFTAFLHPEE--HPHMKDIVIAETLEDIDKNGDGKISLEEFI 223 (325)
T ss_pred HHhhcccCCCCcccHHHHHhccChhh--cchHHHHHHHHHHhhcccCCCCceeHHHHH
Confidence 45678999999999999988855554 111111235678999999999999998765
No 117
>PRK00068 hypothetical protein; Validated
Probab=56.27 E-value=3.4e+02 Score=32.09 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=11.8
Q ss_pred hhhHHHhheeeeeeeccceeeec
Q 013211 196 VVDALYFCIVTMCTIGYGDITPR 218 (447)
Q Consensus 196 ~~da~yf~~vtltTIGYGDi~P~ 218 (447)
|.|-+||.- +||+++.-+
T Consensus 38 ~td~lWF~~-----lgy~~Vf~t 55 (970)
T PRK00068 38 YIDWLWFGE-----VGYRSVFFT 55 (970)
T ss_pred HHHHHHHHh-----CCCceeehH
Confidence 557777754 788776643
No 118
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=56.23 E-value=16 Score=38.67 Aligned_cols=56 Identities=32% Similarity=0.501 Sum_probs=42.1
Q ss_pred HhhhhccCCCCcChHHHHHHH-H---HHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYK-L---KEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~-L---~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~~ 445 (447)
+...|.|+.|.++-.||.... | -..+.+++..+.++ =+-.|-|++|+|++.|+.|+
T Consensus 553 F~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~l---a~~mD~NkDG~IDlNEfLeA 612 (631)
T KOG0377|consen 553 FNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILEL---ARSMDLNKDGKIDLNEFLEA 612 (631)
T ss_pred HHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHH---HHhhccCCCCcccHHHHHHH
Confidence 556789999999999987652 2 22356666666644 45679999999999999886
No 119
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=55.62 E-value=4.1e+02 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 342 FASIWLLVSTLAVARAFLYLAEARVD 367 (447)
Q Consensus 342 f~ii~il~G~~~va~~~~~l~~~~~~ 367 (447)
|.++++++...++.+++..+.+.+-+
T Consensus 1365 fIsfllIvsffVlnmfVgvvvenfhK 1390 (1956)
T KOG2302|consen 1365 FISFLLIVSFFVLNMFVGVVVENFHK 1390 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666777766666544
No 120
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=53.93 E-value=15 Score=30.51 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=27.7
Q ss_pred CCcChHHHHHHHHHHhC-----CCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 396 GFVSKSEYVIYKLKEMG-----KISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 396 g~vs~~ef~~~~L~~~~-----ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
+.+++.|+....-.+.. +-+++.++ +-|+.||.|++|+++..+.+
T Consensus 22 ~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd---~im~~LD~n~Dg~vdF~EF~ 71 (91)
T cd05024 22 NYLNRDDLQKLMEKEFSEFLKNQNDPMAVD---KIMKDLDDCRDGKVGFQSFF 71 (91)
T ss_pred CcCCHHHHHHHHHHHhHHHHcCCCCHHHHH---HHHHHhCCCCCCcCcHHHHH
Confidence 44566665443322222 22334444 66888899999999998754
No 121
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=53.18 E-value=44 Score=30.62 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=35.8
Q ss_pred cccchhHHHhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 379 GQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 379 ~~~~t~~~l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
++..+.+++.++--...|-+.-.-|+...=.++.-.+.|+ -|..+|...|.+++|+|..+.|-+
T Consensus 62 Gk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~--~I~~AF~~FD~~~~G~I~~d~lre 125 (171)
T KOG0031|consen 62 GKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEE--VILNAFKTFDDEGSGKIDEDYLRE 125 (171)
T ss_pred CCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHH--HHHHHHHhcCccCCCccCHHHHHH
Confidence 3444444444444444444444444333223333333332 456889999999999999887654
No 122
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=51.31 E-value=24 Score=37.08 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=40.4
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADL 442 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl 442 (447)
+.+.|.++||.++..|-..+--+.-.++++|+.. +-|+..|.+++++|+..+-
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~---k~~e~~d~~g~~~I~~~e~ 140 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAA---KFFEHMDKDGKATIDLEEW 140 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCccCHHHHH---HHHHHhccCCCeeeccHHH
Confidence 4567889999988887655544445677877777 4688999999999998764
No 123
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=47.34 E-value=15 Score=25.69 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=19.6
Q ss_pred HHHHhhhccCCCCCccChhhhhh
Q 013211 422 ICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 422 i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+.+.|...|.+++|.|+..|+..
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~ 24 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKA 24 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH
Confidence 45679999999999999999763
No 124
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=47.28 E-value=1.7e+02 Score=31.77 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=16.5
Q ss_pred hhHHHHHHhhhhccccCCCcc
Q 013211 314 LDSFYLSVMSVTTVGYGDRAF 334 (447)
Q Consensus 314 ~ds~Yfs~iTlTTVGyGD~~p 334 (447)
.|.+||+..+-+|.| |..+|
T Consensus 432 ~~~LWWALALGA~LG-GNaTp 451 (515)
T TIGR00774 432 FELLAVAINTGTNLP-SVATP 451 (515)
T ss_pred ccHHHHHHHHhcccc-ccccH
Confidence 589999999999998 55555
No 125
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=46.59 E-value=1.3e+02 Score=27.71 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=35.5
Q ss_pred hccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 391 did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
|-+..|.+.-.+|..-+-..+++-. ...+|+..|+..|.|++|+|++.+|-
T Consensus 79 dk~~~g~i~fe~f~~~mt~k~~e~d--t~eEi~~afrl~D~D~~Gkis~~~lk 129 (172)
T KOG0028|consen 79 DKEGSGKITFEDFRRVMTVKLGERD--TKEEIKKAFRLFDDDKTGKISQRNLK 129 (172)
T ss_pred hhccCceechHHHHHHHHHHHhccC--cHHHHHHHHHcccccCCCCcCHHHHH
Confidence 4455677777777665444444333 33455599999999999999998874
No 126
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=44.72 E-value=40 Score=32.49 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=29.3
Q ss_pred hccCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhhhh
Q 013211 391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445 (447)
Q Consensus 391 did~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~~ 445 (447)
|.+++|.+.-.||.... +-|.+=.+-|+.-|.|++|+|+..||.++
T Consensus 104 d~~~~G~i~f~EF~~Lw---------~~i~~Wr~vF~~~D~D~SG~I~~sEL~~A 149 (221)
T KOG0037|consen 104 DRDNSGTIGFKEFKALW---------KYINQWRNVFRTYDRDRSGTIDSSELRQA 149 (221)
T ss_pred cCCCCCccCHHHHHHHH---------HHHHHHHHHHHhcccCCCCcccHHHHHHH
Confidence 44555555555543321 23444456688888999999998888654
No 127
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=44.34 E-value=23 Score=29.01 Aligned_cols=29 Identities=7% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhh-ccCCCCC-ccChhhhhh
Q 013211 416 EKDVMQICHKFDR-LDTGNCG-KITLADLME 444 (447)
Q Consensus 416 ~edv~~i~~~F~~-ld~~~~G-~l~~~dl~~ 444 (447)
++.+..+.+.|++ .|.+++| +|+..||..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ 35 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLS 35 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHH
Confidence 4667888999999 7788876 999998863
No 128
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.30 E-value=30 Score=35.16 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=35.2
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhCCCCH-HH-HHHHHHHhhhccCCCCCccChhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISE-KD-VMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~ki~~-ed-v~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
+...|-+.||+|+..||+-.+.-..+.-.+ +- +.+--+-|+..|.|++|+|+.++|.
T Consensus 206 l~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~ 264 (325)
T KOG4223|consen 206 LEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELL 264 (325)
T ss_pred HhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHh
Confidence 455678899999999987765544431111 11 1122233566788888888887765
No 129
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=43.27 E-value=28 Score=38.20 Aligned_cols=55 Identities=20% Similarity=0.414 Sum_probs=47.2
Q ss_pred cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARV 366 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~ 366 (447)
.+.++++||+...+.-=| -|+.|.+..||+...+|-++.+++++..+++++...+
T Consensus 594 FgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 594 FGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred chhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 347899999988877777 5999999999999999999999999988888885554
No 130
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=42.19 E-value=60 Score=30.26 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=45.7
Q ss_pred cCCCCCCChhhHHHhheeeeeeeccceeeecCCCCchhhHHHHHHHHHHHHHHH
Q 013211 188 FTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILL 241 (447)
Q Consensus 188 ~~~~~~~s~~da~yf~~vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~~~~~ 241 (447)
|++.+..+|+|=+||+++.=+|-.--|..+.+..-|-....-.+++..+.+.++
T Consensus 125 FP~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~il 178 (180)
T PF07077_consen 125 FPGDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVIL 178 (180)
T ss_pred CCCCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667789999999999999988899999999999999888887777666554
No 131
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=42.16 E-value=18 Score=21.75 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=11.5
Q ss_pred cCCCCCccChhhhh
Q 013211 430 DTGNCGKITLADLM 443 (447)
Q Consensus 430 d~~~~G~l~~~dl~ 443 (447)
|.|++|+++.-|+.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 78999999998875
No 132
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=41.45 E-value=3e+02 Score=30.00 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=12.8
Q ss_pred CCCchhhHHHHHHHHHHHHHH
Q 013211 220 VPTKVFSILFVLVGFGFVDIL 240 (447)
Q Consensus 220 ~~gr~f~i~~~l~Gi~l~~~~ 240 (447)
+...+.|++|+++|+..+..+
T Consensus 204 ~fy~~m~laYvllgllW~~~~ 224 (518)
T KOG2568|consen 204 PFYGFMCLAYVLLGLLWFFQC 224 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777776655544
No 133
>PLN02964 phosphatidylserine decarboxylase
Probab=41.42 E-value=51 Score=36.92 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=39.4
Q ss_pred HhhhhccCCCCcChHHHHHHHHHHhC--CCCHHHHHHHHHHhhhccCCCCCccChhhhhh
Q 013211 387 FLAADIDNNGFVSKSEYVIYKLKEMG--KISEKDVMQICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 387 l~~~did~~g~vs~~ef~~~~L~~~~--ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
+...|.+.+|.+ +-..+...| ..++++...+.+-|+..|.|++|.|+.+|+..
T Consensus 149 F~lfD~dgdG~i-----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~ 203 (644)
T PLN02964 149 FDLLDPSSSNKV-----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSD 203 (644)
T ss_pred HHHHCCCCCCcC-----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 334566777763 344566777 57777767788889999999999999998863
No 134
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=40.30 E-value=42 Score=24.87 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=19.1
Q ss_pred HHHHHhhhccCCCCCccChhhhhh
Q 013211 421 QICHKFDRLDTGNCGKITLADLME 444 (447)
Q Consensus 421 ~i~~~F~~ld~~~~G~l~~~dl~~ 444 (447)
.....|.+.|..++|+|...++.+
T Consensus 22 yA~~LFq~~D~s~~g~Le~~Ef~~ 45 (51)
T PF14788_consen 22 YARQLFQECDKSQSGRLEGEEFEE 45 (51)
T ss_dssp HHHHHHHHH-SSSSSEBEHHHHHH
T ss_pred HHHHHHHHhcccCCCCccHHHHHH
Confidence 345689999999999999988764
No 135
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=40.01 E-value=3.7e+02 Score=26.32 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=25.8
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 333 AFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWV 377 (447)
Q Consensus 333 ~p~t~~gr~f~ii~il~G~~~va~~~~~l~~~~~~~~~r~~~~~v 377 (447)
.|.|.+-++..-+|.++++=++-.+. +...-+.+++++++.
T Consensus 162 ~P~tsa~~~n~~~~~Ll~~~i~nl~~----n~~Ll~~n~~lK~~~ 202 (236)
T PF02175_consen 162 IPSTSAPKFNIFFWFLLYLNIFNLIF----NCILLRQNRRLKKRY 202 (236)
T ss_pred ecCccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 68888889999888888765554333 334444444444433
No 136
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=39.09 E-value=34 Score=32.19 Aligned_cols=33 Identities=18% Similarity=0.474 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHhhhccCC-CCCccChhhhhh
Q 013211 412 GKISEKDVMQICHKFDRLDTG-NCGKITLADLME 444 (447)
Q Consensus 412 ~ki~~edv~~i~~~F~~ld~~-~~G~l~~~dl~~ 444 (447)
...+.++|..+..+|.++|.+ ++|.|+..|+..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~ 58 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLS 58 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHH
Confidence 566778999999999999999 999999999864
No 137
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=38.40 E-value=1.5e+02 Score=26.32 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=23.8
Q ss_pred HHHHhCCCCHHHHHHHHHHhhhccCCCCCcc
Q 013211 407 KLKEMGKISEKDVMQICHKFDRLDTGNCGKI 437 (447)
Q Consensus 407 ~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l 437 (447)
.+...++.+++++.++.+++++++....-..
T Consensus 88 ~li~iE~l~~~el~~~~~~~~~~~~~~~~~~ 118 (132)
T PF04120_consen 88 ELIDIEDLTEEELEEIRKRYERLAEQARERH 118 (132)
T ss_pred HhCCcccCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 4566788999999999999998876544433
No 138
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=37.13 E-value=15 Score=31.54 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 417 KDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 417 edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
+....+.=.|.+||.|++|.|+..||.
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~ 77 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELK 77 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTG
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHH
Confidence 334445566777777777777776664
No 139
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=35.97 E-value=34 Score=27.90 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhccC-CC-CCccChhhhhh
Q 013211 416 EKDVMQICHKFDRLDT-GN-CGKITLADLME 444 (447)
Q Consensus 416 ~edv~~i~~~F~~ld~-~~-~G~l~~~dl~~ 444 (447)
++.+..|.+.|++-|. ++ +|.|+.+||..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~ 36 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKE 36 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHH
Confidence 3566777888888887 55 78998888753
No 140
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.50 E-value=1.5e+02 Score=35.46 Aligned_cols=7 Identities=29% Similarity=0.429 Sum_probs=3.3
Q ss_pred hhhHHHh
Q 013211 196 VVDALYF 202 (447)
Q Consensus 196 ~~da~yf 202 (447)
...+|+|
T Consensus 803 ~~~a~s~ 809 (1109)
T PRK10929 803 IHSAFGF 809 (1109)
T ss_pred HHHHHHH
Confidence 4445544
No 141
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=32.41 E-value=2.6e+02 Score=31.86 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=23.6
Q ss_pred eeeeeeccceeeecCCCCchhhHHHHHHHHHHH
Q 013211 205 VTMCTIGYGDITPRTVPTKVFSILFVLVGFGFV 237 (447)
Q Consensus 205 vtltTIGYGDi~P~t~~gr~f~i~~~l~Gi~l~ 237 (447)
-++|.-||-|+....++.-+++.+-++++++++
T Consensus 220 g~~~GA~YTDI~~~lP~~~iL~aial~~aia~f 252 (885)
T COG1615 220 GTFTGAGYTDINAQLPAKLILIAIALLCAIAFF 252 (885)
T ss_pred CcccccCceeeeeeccHHHHHHHHHHHHHHHHH
Confidence 467788999999888877666666666665433
No 142
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=30.44 E-value=3.1e+02 Score=29.03 Aligned_cols=17 Identities=18% Similarity=-0.091 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013211 348 LVSTLAVARAFLYLAEA 364 (447)
Q Consensus 348 l~G~~~va~~~~~l~~~ 364 (447)
+.|.++++.....+...
T Consensus 176 ~~g~Glv~iP~~l~~~~ 192 (471)
T PF04791_consen 176 LLGYGLVAIPRDLWRSS 192 (471)
T ss_pred HHhccHHHHHHHHHHhc
Confidence 44555666555555433
No 143
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=30.22 E-value=59 Score=30.36 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=38.4
Q ss_pred cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARA 357 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~ 357 (447)
-+|+|=+||+|+.-+|-+-.|..+.+...|-.+..-.+++..+-+.+
T Consensus 131 P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~i 177 (180)
T PF07077_consen 131 PDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVI 177 (180)
T ss_pred CCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999988887777777665554433
No 144
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=29.70 E-value=6.9e+02 Score=26.34 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=16.2
Q ss_pred HHHhhhhccccCCCccCCcc
Q 013211 319 LSVMSVTTVGYGDRAFKSMP 338 (447)
Q Consensus 319 fs~iTlTTVGyGD~~p~t~~ 338 (447)
+.++|.-.+.+|+..|.+..
T Consensus 101 ~~~~t~l~~i~gEl~PK~~a 120 (429)
T COG1253 101 FAIITFLHVVFGELVPKSIA 120 (429)
T ss_pred HHHHHhhhheeechhhhHHH
Confidence 66778888889999997753
No 145
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.57 E-value=46 Score=29.62 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=31.8
Q ss_pred cchhhHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHH
Q 013211 311 LGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTL 352 (447)
Q Consensus 311 ~s~~ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~ 352 (447)
....++.||...+++|+|||++.+.+..+.......++.+..
T Consensus 116 ~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~ 157 (212)
T COG1226 116 LARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLG 157 (212)
T ss_pred EEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccC
Confidence 567788899999999999999998877766655555554433
No 146
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=29.28 E-value=48 Score=35.34 Aligned_cols=57 Identities=25% Similarity=0.444 Sum_probs=40.7
Q ss_pred hhhccCCCCcChHH---HHHHHHHHhCCCCHHHH--HH-HHHHhhhccCCCCCccChhhhhhh
Q 013211 389 AADIDNNGFVSKSE---YVIYKLKEMGKISEKDV--MQ-ICHKFDRLDTGNCGKITLADLMEA 445 (447)
Q Consensus 389 ~~did~~g~vs~~e---f~~~~L~~~~ki~~edv--~~-i~~~F~~ld~~~~G~l~~~dl~~~ 445 (447)
-.|++++|.++..| |..+.+.+|....++++ .. +++-++-+.-.+.|+||+.||...
T Consensus 359 clDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 359 CLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred eeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 35889999988776 55556666666666654 33 344466677788999999999863
No 147
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=27.58 E-value=3.4e+02 Score=30.66 Aligned_cols=17 Identities=6% Similarity=0.194 Sum_probs=11.3
Q ss_pred CCCCHHHHHHHHHHhhh
Q 013211 412 GKISEKDVMQICHKFDR 428 (447)
Q Consensus 412 ~ki~~edv~~i~~~F~~ 428 (447)
+.++++|+.++++....
T Consensus 723 ~~~~~~~~~~~~~~~~~ 739 (743)
T TIGR00870 723 EGTTEEETKELKQDISS 739 (743)
T ss_pred CCCChhhHHHHHHHhhh
Confidence 46677777777766543
No 148
>PF14658 EF-hand_9: EF-hand domain
Probab=27.23 E-value=1.2e+02 Score=23.66 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=35.3
Q ss_pred hhhhccCCCCcChHHHHHHHHHHhCC--CCHHHHHHHHHHhhhccCCCC-CccChhhhh
Q 013211 388 LAADIDNNGFVSKSEYVIYKLKEMGK--ISEKDVMQICHKFDRLDTGNC-GKITLADLM 443 (447)
Q Consensus 388 ~~~did~~g~vs~~ef~~~~L~~~~k--i~~edv~~i~~~F~~ld~~~~-G~l~~~dl~ 443 (447)
.+-|.+..|.|...+... .|..++. -++.++. +--+++|-++. |+++++|..
T Consensus 5 ~~fD~~~tG~V~v~~l~~-~Lra~~~~~p~e~~Lq---~l~~elDP~g~~~~v~~d~F~ 59 (66)
T PF14658_consen 5 DAFDTQKTGRVPVSDLIT-YLRAVTGRSPEESELQ---DLINELDPEGRDGSVNFDTFL 59 (66)
T ss_pred hhcCCcCCceEeHHHHHH-HHHHHcCCCCcHHHHH---HHHHHhCCCCCCceEeHHHHH
Confidence 345667778777666444 4666665 4444444 66778899888 999998864
No 149
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=26.44 E-value=31 Score=29.26 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=8.1
Q ss_pred hhhccCCCCCccChhhh
Q 013211 426 FDRLDTGNCGKITLADL 442 (447)
Q Consensus 426 F~~ld~~~~G~l~~~dl 442 (447)
++--|.|++|+|+.+|.
T Consensus 49 W~LaD~~~dG~L~~~EF 65 (104)
T PF12763_consen 49 WNLADIDNDGKLDFEEF 65 (104)
T ss_dssp HHHH-SSSSSEEEHHHH
T ss_pred HhhhcCCCCCcCCHHHH
Confidence 44445555555555543
No 150
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=26.22 E-value=2e+02 Score=31.78 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=35.9
Q ss_pred CCChhhHHHhheeeeeeecc--ceeeecCCCCchhhHHHHHHHH
Q 013211 193 THPVVDALYFCIVTMCTIGY--GDITPRTVPTKVFSILFVLVGF 234 (447)
Q Consensus 193 ~~s~~da~yf~~vtltTIGY--GDi~P~t~~gr~f~i~~~l~Gi 234 (447)
.+++.+.+|=......|+|. |++.+.|+.+++..++-+++|=
T Consensus 449 ~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR 492 (559)
T PRK05482 449 PHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGR 492 (559)
T ss_pred CCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 37899999988888999986 5588889999999999999883
No 151
>KOG3901 consensus Transcription initiation factor IID subunit [Transcription]
Probab=25.24 E-value=2.7e+02 Score=23.75 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHhhhcc
Q 013211 415 SEKDVMQICHKFDRLD 430 (447)
Q Consensus 415 ~~edv~~i~~~F~~ld 430 (447)
+.+++....++|+..|
T Consensus 85 mneelk~ArKaF~~~~ 100 (109)
T KOG3901|consen 85 MNEELKKARKAFDETD 100 (109)
T ss_pred hHHHHHHHHhccchHh
Confidence 4578888889998877
No 152
>PRK11098 microcin B17 transporter; Reviewed
Probab=24.38 E-value=8.7e+02 Score=25.74 Aligned_cols=31 Identities=10% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013211 220 VPTKVFSILFVLVGFGFVDILLTGMVSYVLD 250 (447)
Q Consensus 220 ~~gr~f~i~~~l~Gi~l~~~~~~~~~~~l~~ 250 (447)
....+...+..+.++.+..+.+..+..++.+
T Consensus 133 d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~ 163 (409)
T PRK11098 133 TIGQFYSEVGVFLGIALIAVVISVLNNFFVS 163 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777766654
No 153
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=24.01 E-value=1.3e+03 Score=27.74 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=24.4
Q ss_pred hccchhhHHHHHHhhhhccccCCC-ccCCcchhHHHHHHHHHH
Q 013211 309 EKLGWLDSFYLSVMSVTTVGYGDR-AFKSMPGRLFASIWLLVS 350 (447)
Q Consensus 309 e~~s~~ds~Yfs~iTlTTVGyGD~-~p~t~~gr~f~ii~il~G 350 (447)
.+..+-+.+||.+..+...-+.+. .+.....+++..++.++|
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (1094)
T PRK02983 170 GSLAPPERLGWALNRVVGFALADPDLFTGHPPVWVNALLGLFG 212 (1094)
T ss_pred CCCCCcccHHHHHHhhcccccCccccccccchHHHHHHHHHHH
Confidence 345677899998877766555432 223344566555444444
No 154
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.78 E-value=4.1e+02 Score=30.77 Aligned_cols=83 Identities=24% Similarity=0.339 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheeeeeeeccceeeec--CCCCchhhHHHHHHHHHHH
Q 013211 160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPR--TVPTKVFSILFVLVGFGFV 237 (447)
Q Consensus 160 ~~~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vtltTIGYGDi~P~--t~~gr~f~i~~~l~Gi~l~ 237 (447)
+.++...++++++++..+.+.+.+..... ...+++.+++. |+.-.=.||..|. .+.+|+++++|...=+.++
T Consensus 590 ~~I~gf~l~~~I~~~aya~l~~llfG~~v--~~f~~f~~s~~----t~~~~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v 663 (798)
T KOG3599|consen 590 KEIVGFALMFLILFFAYAQLGYLLFGNQV--SDFRTFVASIV----TLLRYILGDFCPAEIFHANRILGPLLFLTYVFVV 663 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcc--CChHHHHHHHH----HHHHHHhccCCccccccCCchHHHHHHHHHHHHH
Confidence 44444455555555555555555543221 12345555543 3222223677765 4678888887766544444
Q ss_pred H-HHHHHHHHHH
Q 013211 238 D-ILLTGMVSYV 248 (447)
Q Consensus 238 ~-~~~~~~~~~l 248 (447)
. ++++.+...+
T Consensus 664 ~~illnmF~aiI 675 (798)
T KOG3599|consen 664 SFILLNLFVAII 675 (798)
T ss_pred HHHHHHHHHHHH
Confidence 3 3333333333
No 155
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=23.73 E-value=3.8e+02 Score=28.08 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCChhhHHHhheee
Q 013211 162 IVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVT 206 (447)
Q Consensus 162 ~v~~~~i~l~l~i~~g~~i~~~~~~~~~~~~~~s~~da~yf~~vt 206 (447)
++...++++++++..+.+.+.+.... ..+..++..|+.-.+..
T Consensus 335 l~~f~~~~~i~~~~fa~~g~l~fG~~--~~~f~s~~~s~~tl~~~ 377 (425)
T PF08016_consen 335 LLGFFVIFLIIFLAFAQAGYLLFGSY--SEDFSSFSSSLVTLFRM 377 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC--ccccCCHHHHHHHHHHH
Confidence 33333444444444444444443221 22456677777655443
No 156
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=23.03 E-value=1.7e+02 Score=31.52 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=14.2
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 013211 223 KVFSILFVLVGFGFVDILLTG 243 (447)
Q Consensus 223 r~f~i~~~l~Gi~l~~~~~~~ 243 (447)
-+|..+++++|+.+++..+..
T Consensus 57 wWfl~iivlL~VSLv~C~lpr 77 (478)
T COG1333 57 WWFLAIIVLLGVSLVGCSLPR 77 (478)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 467777778887777665533
No 157
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=22.92 E-value=1.5e+02 Score=21.72 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 013211 401 SEYVIYKLKEMGKISEKDVMQICHKFDR 428 (447)
Q Consensus 401 ~ef~~~~L~~~~ki~~edv~~i~~~F~~ 428 (447)
-...+..+...|+|+.+-...++.+|++
T Consensus 15 L~dtLDeli~~~~I~p~La~kVL~~FDk 42 (49)
T PF02268_consen 15 LTDTLDELIQEGKITPQLAMKVLEQFDK 42 (49)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3455778899999999999999999986
No 158
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=22.79 E-value=1.1e+03 Score=26.47 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=22.5
Q ss_pred ccccCCCccC-----CcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 013211 326 TVGYGDRAFK-----SMPGRLFASIWLLVSTLA-VARAFLYLAEARVD 367 (447)
Q Consensus 326 TVGyGD~~p~-----t~~gr~f~ii~il~G~~~-va~~~~~l~~~~~~ 367 (447)
++|.||.... ...|.++.++|+++..++ +=++++.+.+.+.+
T Consensus 570 ~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~ 617 (743)
T TIGR00870 570 IIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQL 617 (743)
T ss_pred HcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5677775322 234666666666665444 44455555555543
No 159
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=22.30 E-value=38 Score=20.85 Aligned_cols=10 Identities=30% Similarity=0.996 Sum_probs=6.0
Q ss_pred CCCChhhhhh
Q 013211 35 MPITPSELKD 44 (447)
Q Consensus 35 ~~~~~~~~~~ 44 (447)
|||+|-+|++
T Consensus 8 mPMSPddy~~ 17 (23)
T PF12162_consen 8 MPMSPDDYDE 17 (23)
T ss_dssp --S-HHHHHH
T ss_pred cCCCHHHHHH
Confidence 8999999875
No 160
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=21.29 E-value=82 Score=33.68 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=40.5
Q ss_pred cCCCCcChHHHHHHHHHHhCCCCHHHHHHHHHHhhhccCCCCCccChhhhh
Q 013211 393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLM 443 (447)
Q Consensus 393 d~~g~vs~~ef~~~~L~~~~ki~~edv~~i~~~F~~ld~~~~G~l~~~dl~ 443 (447)
..+|..+-.+|+...|-+.+|-+...+. ==|+-+|.+++|.|+..||-
T Consensus 327 ~~eGrmdykdFv~FilA~e~k~t~~Sle---YwFrclDld~~G~Lt~~el~ 374 (493)
T KOG2562|consen 327 KVEGRMDYKDFVDFILAEEDKDTPASLE---YWFRCLDLDGDGILTLNELR 374 (493)
T ss_pred eecCcccHHHHHHHHHHhccCCCccchh---hheeeeeccCCCcccHHHHH
Confidence 3467788899999988899998887766 45999999999999999984
No 161
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.10 E-value=8.9e+02 Score=26.55 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=26.5
Q ss_pred hHHHHHHhhhhccccCCCccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 013211 315 DSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYL 361 (447)
Q Consensus 315 ds~Yfs~iTlTTVGyGD~~p~t~~gr~f~ii~il~G~~~va~~~~~l 361 (447)
-++=+++....+++.|+..-.+...-+-..+-+++|+++....+..+
T Consensus 443 ~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~li 489 (650)
T PF04632_consen 443 IGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVFRLI 489 (650)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777777554444444445555666666655555444
No 162
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.52 E-value=7.6e+02 Score=28.14 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=8.1
Q ss_pred CchhhHHHHHHHH
Q 013211 222 TKVFSILFVLVGF 234 (447)
Q Consensus 222 gr~f~i~~~l~Gi 234 (447)
|-.|++||+.+.+
T Consensus 72 ~~~~~~~~~~~~~ 84 (697)
T PF09726_consen 72 GLAFSVFFVCIAF 84 (697)
T ss_pred hhHHHHHHHHHHH
Confidence 5567777766543
Done!