RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013211
(447 letters)
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the two
membrane helix type ion channels found in bacteria.
Length = 74
Score = 69.5 bits (171), Expect = 4e-15
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 168 VLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSI 227
+LL+L L G Y + +DALYF VT+ TIGYGDI P T ++F+I
Sbjct: 1 ILLLLVLIFGTVYYSLEEEGWGWD----FLDALYFSFVTLTTIGYGDIVPLTDAGRLFTI 56
Query: 228 LFVLVGFGFVDILLT 242
+++L+G + L
Sbjct: 57 IYILIGIPLFLLFLA 71
Score = 51.4 bits (124), Expect = 1e-08
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 293 VVVLCIGIGVGVMHFVEKLGW----LDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLL 348
+++L + I V + +E+ GW LD+ Y S +++TT+GYGD + GRLF I++L
Sbjct: 1 ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYIL 60
Query: 349 VSTLAVARAFLYLA 362
+ L
Sbjct: 61 IGIPLFLLFLAVLG 74
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 48.9 bits (117), Expect = 3e-06
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 194 HPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQE 253
+ A YF IVTM T+GYGDI P + ++F+I +++G + + T + + +
Sbjct: 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILG---ITVFATSISAIFGPVIR 223
Query: 254 NYLLRTIKGGGHK-ESPGSYII 274
L R +KG +II
Sbjct: 224 GNLKRLVKGRISHMHRKDHFII 245
Score = 33.8 bits (78), Expect = 0.15
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 317 FYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAV 354
FY S+++++TVGYGD S RLF I +++ + V
Sbjct: 173 FYFSIVTMSTVGYGDIVPVSESARLFT-ISVIILGITV 209
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 41.8 bits (98), Expect = 7e-04
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 197 VDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD 250
+ A+Y+ I TM T+GYGD+ +F I ++L G L+ M + V++
Sbjct: 252 ISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305
Score = 28.3 bits (63), Expect = 10.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 300 IGVGVMHFVEKLGWL---DSFYLSVMSVTTVGYGD 331
IG + +F E W+ + Y S+ ++TTVGYGD
Sbjct: 235 IGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGD 269
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLMEA 445
D D +G++ E K+++++V ++ F+ +D G+I+ + +EA
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEA 59
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 34.4 bits (80), Expect = 0.008
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 391 DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
D D +G +S E LK +G +SE+++ ++ + D+ D G+ GKI + +E
Sbjct: 10 DKDGDGTISADELKAA-LKSLGEGLSEEEIDEMIREVDK-D-GD-GKIDFEEFLEL 61
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 34.6 bits (80), Expect = 0.052
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVD---------ALYFCIVTMCTIGYGDITP 217
++LL ++ +GV ++ +P+ AL + T+ T G+GD+
Sbjct: 102 LLLLFIFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMY 161
Query: 218 RT-VPTKVFSILFVLVGFGFVDILLTGM 244
T VP V +F ++ +LL +
Sbjct: 162 DTLVPGTVLGKIFFVIFIILGGVLLLNL 189
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 35.7 bits (82), Expect = 0.066
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 12 PRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALTLSLASP 71
P P P PPL P + P P L+ G V P+ P A + +
Sbjct: 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVP-QPAPSREAPAS 2991
Query: 72 TTSASSSSSTSFFSRDSSSL 91
+T + S S S +SSL
Sbjct: 2992 STPPLTGHSLSRVSSWASSL 3011
Score = 34.9 bits (80), Expect = 0.094
Identities = 14/70 (20%), Positives = 21/70 (30%)
Query: 12 PRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALTLSLASP 71
P PP P +S PS V +P A P + L P
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831
Query: 72 TTSASSSSST 81
T++ ++
Sbjct: 2832 TSAQPTAPPP 2841
Score = 31.8 bits (72), Expect = 0.95
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 16 PTPPPPLFPLPEDGEISIPMPITPSELKDR---LIFGPVTSPKDASPIVDALTLSLASPT 72
P PPP P P + P+P P+ + L P A P A P
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP 2761
Query: 73 TSASSSSST 81
T+A +
Sbjct: 2762 TTAGPPAPA 2770
>gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein. This family includes FlxA from
E. coli. The expression of FlxA is regulated by the FliA
sigma factor, a transcription factor specific for class
3 flagellar operons. However FlxA is not required for
flagellar function or formation.
Length = 106
Score = 32.4 bits (74), Expect = 0.12
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 74 SASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQS--SQLQS 114
S+ S+SSTS + SS Q S+Q +Q QS QL+
Sbjct: 1 SSVSASSTSSSASSGSSDSQIKSLQ------KQIQSLTKQLKE 37
>gnl|CDD|148723 pfam07281, INSIG, Insulin-induced protein (INSIG). This family
contains a number of eukaryotic Insulin-induced proteins
(INSIG-1 and INSIG-2) approximately 200 residues long.
INSIG-1 and INSIG-2 are found in the endoplasmic
reticulum and bind the sterol-sensing domain of SREBP
cleavage-activating protein (SCAP), preventing it from
escorting SREBPs to the Golgi. Their combined action
permits feedback regulation of cholesterol synthesis
over a wide range of sterol concentrations.
Length = 193
Score = 32.8 bits (75), Expect = 0.22
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 21/109 (19%)
Query: 230 VLVGFGFVDILLTGMVSYVLDLQENYLLRTIK-GGGHKESPGSYI--------------- 273
VL GFG V G+++ L EN+ + +K H Y
Sbjct: 7 VLFGFGVV----YGVITIHLQQHENHWITPVKLENTHFYGSWWYPGFWGTAAVALGLVLP 62
Query: 274 -IDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSV 321
+D K G +R V +G VG+ + KL + + S+
Sbjct: 63 CLDSKLGEPPLRHDFTREWSSVARSVGAFVGIAFAMRKLPFESTTQASL 111
>gnl|CDD|221321 pfam11928, DUF3446, Domain of unknown function (DUF3446). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 80 to 99 amino acids in length. This domain is
found associated with pfam00096. This domain has a
single completely conserved residue P that may be
functionally important.
Length = 84
Score = 29.8 bits (67), Expect = 0.59
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 60 IVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSP 115
+V L P +S+ SSSS+S SSS QS + +V Q + S + S
Sbjct: 23 LVSGLVGMSNPPPSSSPSSSSSS-----SSSSSQSPPLSCSV---HQSEPSPIYSA 70
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 31.4 bits (72), Expect = 0.61
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 277 KKGRMRIRM-KVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSV 321
K ++ + K+A L +VL + I V ++ F +L++ ++
Sbjct: 136 AKTPLQRLLDKLAKILVPIVLALAILVFLIWFFRGGDFLEALLRAL 181
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.7 bits (72), Expect = 0.83
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 3/107 (2%)
Query: 36 PITPSELKDRLIFGPVTSPKDASPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSS 95
PIT +K R G ASP T + P++ S + S+ Q +
Sbjct: 129 PITNPNVKRRTGVGLPPVAPAASP-ALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDT 187
Query: 96 SIQDAVLLPQQQQSSQLQSPQSWLIDPNYAFAKSNLHRSKTAPAMAV 142
+ + + +++ P + S+ + KT
Sbjct: 188 --SKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEK 232
>gnl|CDD|113196 pfam04415, DUF515, Protein of unknown function (DUF515). Family of
hypothetical Archaeal proteins.
Length = 416
Score = 31.8 bits (72), Expect = 0.83
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 60 IVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQD--AVLLPQQQQSSQLQSPQS 117
IVD+ + L+S + S S S STS S S+S +SSS Q Q SQLQS S
Sbjct: 266 IVDSGYVILSSISVSESQSQSTSTSSSSSTSSSESSSTSYSPGDASIQNSQRSQLQSSTS 325
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 30.4 bits (69), Expect = 1.0
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 391 DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
D D++G++S E + LK +G ++S+++V ++ D G+I + +
Sbjct: 102 DKDHDGYISIGE-LRRVLKSLGERLSDEEVEKL---LKEYDEDGDGEIDYEEFKKL 153
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.2 bits (70), Expect = 1.3
Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 18/121 (14%)
Query: 10 LSPRKKPTPPPPLFPLPEDGE---------------ISIPMPITPSELKDRLIFGPVTSP 54
L P++ P+P PPL P + P P P L+ +F S
Sbjct: 232 LHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSS 291
Query: 55 KDASPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQS 114
P A + P S + S + S+ + QQ Q LP ++
Sbjct: 292 NPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQP---LPPAPSMPHIKP 348
Query: 115 P 115
P
Sbjct: 349 P 349
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 30.9 bits (70), Expect = 1.5
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 11 SPRKKPTPPPPLFPLPEDGEISIPMPITPSEL----KDRLIFGPVTSPKDASPIVDALTL 66
SP P PPP P P M + AS +
Sbjct: 113 SPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQA 172
Query: 67 SLASPTTSASSSSSTS 82
+L + ++ + +S
Sbjct: 173 ALPLSSPEETARAPSS 188
>gnl|CDD|151482 pfam11035, SnAPC_2_like, Small nuclear RNA activating complex
subunit 2-like. This family of proteins is SnAPC
subunit 2-like. SnAPC allows the transcription of human
small nuclear RNA genes to occur by recognition of the
proximal sequence element.
Length = 344
Score = 30.8 bits (69), Expect = 1.6
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 4 EPLLCYLSPRKKPTPP--PPLFPLPEDG------EISIPMPITPSELKDRLIFGPVTSPK 55
EP+ S KPT PL G E S P P+ P++ K ++P+
Sbjct: 132 EPVSLLHSRPGKPTQARGKPLLLSAPGGQEDPAPEGSSPAPMAPADPK-----ASGSNPE 186
Query: 56 DASPIVDALTLSLASPTT 73
P +A + SLA +T
Sbjct: 187 TPGPAPEAPSESLAGSST 204
>gnl|CDD|148923 pfam07573, AreA_N, Nitrogen regulatory protein AreA N terminus.
The AreA nitrogen regulatory protein proteins (which
are GATA type transcription factors) share a highly
conserved N terminus and pfam00320 at the C terminus.
Length = 88
Score = 28.5 bits (63), Expect = 1.7
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 11 SPRKKPTPPPPLFPLPE--DGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDAL 64
+PT + D + S T S+L D FG SP D+S D L
Sbjct: 10 PGGARPTQSAAFASSHDSADADRSSSRFPTSSQLSDDFSFGSPISPADSSNAPDGL 65
>gnl|CDD|220617 pfam10177, DUF2371, Uncharacterized conserved protein (DUF2371).
This is a family of proteins conserved from nematodes to
humans. The function is not known.
Length = 142
Score = 29.3 bits (66), Expect = 1.8
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 276 VKKGRMRIRMK--VALALGVVVLCIGIGVGVM 305
V +G++R+ AL LGV++L +GI + V+
Sbjct: 30 VVRGKLRLVSASGRALILGVLILLVGIAMAVL 61
>gnl|CDD|114135 pfam05394, AvrB_AvrC, Avirulence protein. This family consists of
several avirulence proteins from Pseudomonas syringae
and Xanthomonas campestris.
Length = 326
Score = 30.6 bits (69), Expect = 1.8
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 58 SPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQS 117
V + ++SP T ASS++S S + L+ + Q + L P QQ L
Sbjct: 1 MGCVSSKASVVSSPDTGASSTNSPSARAPRYGELRGPA--QRSRLSPYQQ---SLVGAAR 55
Query: 118 WLIDPNYAFAKSN 130
W P+ A KSN
Sbjct: 56 W---PDDASNKSN 65
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 30.2 bits (67), Expect = 2.9
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 15/130 (11%)
Query: 31 ISIPMP-ITPSELKDRLIFGPVTSPKDASPIVDALTL--------SLASPTTSASSSSST 81
I+I +P I S D LI+ P+ P D+ T A P + + +
Sbjct: 544 INISLPTIVSSNESDDLIYDPLQQPVRPMHTSDSETYEFSVDLLRKQAGPNLAKTDAKME 603
Query: 82 SFFSRDSSSLQQSSSIQDAV------LLPQQQQSSQLQSPQSWLIDPNYAFAKSNLHRSK 135
+ + L Q + + D L Q Q P S +PN NL +
Sbjct: 604 GIDGTNPNLLNQINDLSDFKSRLFKKLFLTNQLPFISQPPASEYQEPNLDETNVNLVYEE 663
Query: 136 TAPAMAVIND 145
P + N+
Sbjct: 664 EVPQILFFNN 673
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 29.7 bits (67), Expect = 3.0
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 10/111 (9%)
Query: 14 KKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALTLSLASPTT 73
+ P P P PL E+ E + P ++ P S SP
Sbjct: 146 EDPNPGP---PLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPE 202
Query: 74 SASSSSS-------TSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQS 117
SS S +SF S +S + P +Q
Sbjct: 203 DPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPP 253
>gnl|CDD|217354 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich sensory
protein (TspO) is an integral membrane protein that acts
as a negative regulator of the expression of specific
photosynthesis genes in response to oxygen/light. It is
involved in the efflux of porphyrin intermediates from
the cell. This reduces the activity of
coproporphyrinogen III oxidase, which is thought to lead
to the accumulation of a putative repressor molecule
that inhibits the expression of specific photosynthesis
genes. Several conserved aromatic residues are necessary
for TspO function: they are thought to be involved in
binding porphyrin intermediates. In, the rat
mitochondrial peripheral benzodiazepine receptor (MBR)
was shown to not only retain its structure within a
bacterial outer membrane, but also to be able to
functionally substitute for TspO in TspO- mutants, and
to act in a similar manner to TspO in its in situ
location: the outer mitochondrial membrane. The
biological significance of MBR remains unclear, however.
It is thought to be involved in a variety of cellular
functions, including cholesterol transport in
steroidogenic tissues.
Length = 147
Score = 28.7 bits (65), Expect = 3.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 157 FGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTAS 191
FG S +V+L+L+L + TI F R + A+
Sbjct: 90 FGLHSPGLALIVILLLWLLVLATIVAFWRVSRLAA 124
>gnl|CDD|180699 PRK06799, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 431
Score = 29.9 bits (67), Expect = 3.1
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 50 PVTSPKDASPI---VDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQ 106
P+ K P+ + + L S ++ + S + + SS++ AV
Sbjct: 244 PLQLNKTKEPMEFEIYGSEIPLPSGAIISAIDTKAKIKSYKKNLEELMSSLKKAVNTVMG 303
Query: 107 QQSSQLQSPQSWLIDPNYAFAKSNLHRS-KTAPAMAVINDLKHHDAVPKPQFGSQSIVRQ 165
+ S + W ++P +A S + S +TA +A I D K+ + + Q Q IV
Sbjct: 304 KSFFVGDSAKKWKLNPEFAKDVSKMKISAETANKLAAITDDKYKEGLSYKQALDQFIVGV 363
Query: 166 A 166
A
Sbjct: 364 A 364
>gnl|CDD|233845 TIGR02395, rpoN_sigma, RNA polymerase sigma-54 factor. A sigma
factor is a DNA-binding protein protein that binds to
the DNA-directed RNA polymerase core to produce the
holoenzyme capable of initiating transcription at
specific sites. Different sigma factors act in
vegetative growth, heat shock, extracytoplasmic
functions (ECF), etc. This model represents the clade of
sigma factors called sigma-54, or RpoN (unrelated to
sigma 70-type factors such as RpoD/SigA). RpoN is
responsible for enhancer-dependent transcription, and
its presence characteristically is associated with
varied panels of activators, most of which are
enhancer-binding proteins (but see Brahmachary, et al.,
PMID:15231786). RpoN may be responsible for
transcription of nitrogen fixation genes, flagellins,
pilins, etc., and synonyms for the gene symbol rpoN,
such as ntrA, reflect these observations [Transcription,
Transcription factors].
Length = 429
Score = 29.9 bits (68), Expect = 3.1
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 381 DMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLD 430
D +A ++ ++D +G++ I E+ +SE++V ++ RLD
Sbjct: 95 DRKIALYIIDNLDEDGYLEIDLEEI--ADELE-VSEEEVEKVLELIQRLD 141
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 29.9 bits (67), Expect = 3.4
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 18 PPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALTLSLASPTTSASS 77
P P L P+ P P SE P +++ + S++
Sbjct: 82 PMPNLAPITPPSSEPTPAP-PSSESTATRTPDPNQQALESTESTSTTSADCNDSEQSSTP 140
Query: 78 SSSTSFFSRDSSSLQQSSSI 97
+ ++S S SS S+S+
Sbjct: 141 NLNSSDTSTSSSGALPSTSV 160
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 29.6 bits (66), Expect = 3.5
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 62 DALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAV--LLPQQQQSSQLQSPQS 117
D + +L+S S+S+ S T+FF+ ++S +S SI ++P + +S+ SP S
Sbjct: 2 DNSSTTLSSIILSSSTLSPTTFFTIETSM-DESKSIISTFTEIIPTEIPTSESPSPNS 58
>gnl|CDD|226078 COG3548, COG3548, Predicted integral membrane protein [Function
unknown].
Length = 197
Score = 28.8 bits (65), Expect = 3.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 152 VPKPQFGSQSIVRQAVVLLILYLS-LGVTIYWFNRHNF 188
VPK Q++ L+I LS L V I+WFN H
Sbjct: 36 VPKGGGRLQALAELLSSLIIYALSFLVVAIFWFNHHRI 73
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.5 bits (67), Expect = 4.5
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 268 SPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVM----------HFVEKLGWL 314
G + + M I + ++L +GV+ L +G+ +G + F+ +LGWL
Sbjct: 430 PEGYPSLSTENDVMTI-LIISLLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWL 485
>gnl|CDD|221391 pfam12042, RP1-2, Tubuliform egg casing silk strands structural
domain. Spiders use fibroins to make silk strands. This
family includes tubuliform silk fibroins which are used
to protect egg cases. This domain is a structural domain
which is found in repeats of up to 20 in many
individuals (although this is not necessarily the case).
RP1 makes up structural domains in the N terminal while
RP2 makes up structural domains in the C terminal.
Length = 167
Score = 28.3 bits (63), Expect = 5.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 70 SPTTSASSSSSTSFFSRDSSSLQQSSSIQDA 100
+ ++++SSSS+++F SS+L SS A
Sbjct: 6 AASSASSSSSASAFAQSLSSALASSSQFSSA 36
Score = 28.3 bits (63), Expect = 5.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 57 ASPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQ 111
AS AL+ S AS SA+ ++S S + + S +S+ A Q SSQ
Sbjct: 116 ASSFASALSASAAS---SAAQAASASAAAAAAQSQAAASAFSQA----ASQSSSQ 163
>gnl|CDD|165429 PHA03158, PHA03158, hypothetical protein; Provisional.
Length = 273
Score = 28.9 bits (64), Expect = 5.5
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 16/125 (12%)
Query: 25 LPEDGEISIPMPITPSELKDRLIFGPVTSPK--DASPIVDALTLSLASPTTSASS---SS 79
L D E IP P P +T P + + ++A S + P S +
Sbjct: 39 LLTDSE-PIPTPAAPIL--------NITQPPSLNITHTLEATIFSTSRPNILEPSENCKN 89
Query: 80 STSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWL--IDPNYAFAKSNLHRSKTA 137
++F L + +SI+D +L Q ++ L+ P+S L +PN L +
Sbjct: 90 CSTFLDLFWQQLGEGASIKDLMLNLQLEEVHGLKWPKSSLPLANPNSEAEAQKLQLPRNL 149
Query: 138 PAMAV 142
AV
Sbjct: 150 LPTAV 154
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 29.0 bits (65), Expect = 5.6
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 8 CYLSPRKKPT--PPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALT 65
Y SP + P L P P ++S + + + R +SP D + +
Sbjct: 70 AYPSPERSPALSSERLLSPSPSVLDLSPVLASPQTGKRRR-----SSSPSDDEDEAERPS 124
Query: 66 LSLASPTTSASSSSSTSFFSRDSS---SLQQSSSIQDAVLLPQQQQSSQLQSPQS 117
S + S+SSS + + S S Q S A LP S +
Sbjct: 125 KRPRSDSISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDT 179
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 29.0 bits (64), Expect = 6.8
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 66 LSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQDA 100
LS +S T +SSSSS+S S SSS SSS +D
Sbjct: 1244 LSESSSTMHSSSSSSSSSCSSSSSSSDSSSSEEDG 1278
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 28.8 bits (64), Expect = 6.8
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 227 ILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIK-----------GGGHKESPGS 271
I+F LV G +L+ + S+ +D+ +L+T+K G H +PGS
Sbjct: 99 IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGS 154
>gnl|CDD|115849 pfam07220, DUF1420, Protein of unknown function (DUF1420). This
family consists of several hypothetical putative
lipoproteins which seem to be found specifically in the
bacterium Leptospira interrogans. Members of this family
are typically around 670 resides in length and their
function is unknown.
Length = 672
Score = 28.7 bits (64), Expect = 8.0
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 291 LGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFAS--IWLL 348
GV+ IG+G+ ++ FV+ + L +F LS + + V G R F IW+L
Sbjct: 430 FGVITTIIGLGLFLIIFVKPIANLKAFLLSFIIIIFVILGI-LLGQKASRFFLEPFIWIL 488
Query: 349 VSTLAV 354
+S + +
Sbjct: 489 ISLIGI 494
>gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed.
Length = 656
Score = 28.4 bits (64), Expect = 8.8
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 328 GYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQD 381
G R L A+ L A+ R ++ H + + +L D
Sbjct: 593 FLGSRGLAIRRMELLGPRG----GRALGALLLRRAQRRAERLHARARRALLHAD 642
>gnl|CDD|234700 PRK00249, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 222
Score = 27.9 bits (63), Expect = 9.4
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 8 CYLSPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSP--KD--ASPIVDA 63
C PR P E S + ++ P KD A + D
Sbjct: 10 CASIPRLPLVGGAPAAAPVEAPTPLPNPAPNGSIFQAGSLWNYGYQPLFKDRRARNVGDI 69
Query: 64 LTLSLASPTTSASSSSSTSFFSRDSSS 90
LT+ L TSAS S+ST+ SRDSS+
Sbjct: 70 LTVVL-QENTSASKSNSTN-RSRDSST 94
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 28.3 bits (63), Expect = 9.4
Identities = 17/68 (25%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 11 SPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALT-LSLA 69
PR+ P P P D S + SP SP A + LA
Sbjct: 257 KPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLA 316
Query: 70 SPTTSASS 77
SP S
Sbjct: 317 SPGKSPRD 324
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 28.5 bits (64), Expect = 9.9
Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 20/134 (14%)
Query: 39 PSELKDRLIFGPVTSPKDASPIVDALTLSLASPTTSASSSSSTSFFSRDSSSLQQSSSIQ 98
P+E K L + + +A+ + AS + + + D S L + + +
Sbjct: 404 PAEKKTALTEQTTAQQQVQAANAEAVAEADASAEPADTVEQA----LDDESELLAALNAE 459
Query: 99 DAVLLPQQQ-----QSSQLQSPQSWLIDPNYAFAKSNLHRSKTAPAMAVINDLKHHDAVP 153
AV+L Q Q SS L + S + + + + +V+N V
Sbjct: 460 QAVILSQAQSQGFEASSSLDADNSAVPE-----------QIDSTAEQSVVNPSVTDTQVD 508
Query: 154 KPQFGSQSIVRQAV 167
+ S V
Sbjct: 509 DTSASNNSAADNTV 522
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,043,087
Number of extensions: 2274888
Number of successful extensions: 3034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3014
Number of HSP's successfully gapped: 80
Length of query: 447
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 347
Effective length of database: 6,502,202
Effective search space: 2256264094
Effective search space used: 2256264094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)