RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013211
(447 letters)
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 100 bits (249), Expect = 7e-24
Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 14/199 (7%)
Query: 184 NRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTG 243
+ ++ + A +F + TIGYG++ RT ++F I + LVG ILL G
Sbjct: 104 QSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAG 163
Query: 244 MVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVG 303
+ + L +++ G V +R+ + L +L +
Sbjct: 164 VG--------DRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTF 215
Query: 304 VMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMP------GRLFASIWLLVSTLAVARA 357
V ++E L++ Y ++++TTVG+GD + P + W+L+ A
Sbjct: 216 VFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASV 275
Query: 358 FLYLAEARVDKRHRKMAKW 376
+ R A+
Sbjct: 276 LTTIGNWLRVVSRRTRAEM 294
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 98.7 bits (245), Expect = 1e-23
Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 20/222 (9%)
Query: 159 SQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPR 218
S+ + Q + ++ + GV++ + + AL+F + T GYG P
Sbjct: 61 SEQQLEQFLGRVLEASNYGVSVLS----QASGNWNWDFTSALFFASTVLSTTGYGHTVPL 116
Query: 219 TVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKK 278
+ K F I++ ++G F + LT +V + + K+
Sbjct: 117 SDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFH---------IRWGFSKQ 167
Query: 279 GRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMP 338
+ + + V + +L+SFY +S++T+G GD
Sbjct: 168 VVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGY 227
Query: 339 G-------RLFASIWLLVSTLAVARAFLYLAEARVDKRHRKM 373
++ + +LL+ +A+ E K+ RKM
Sbjct: 228 NQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKM 269
Score = 52.1 bits (124), Expect = 9e-08
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 147 KHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVT 206
K V V + + + ++ ++ +++ YFC ++
Sbjct: 159 HIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWN------FLESFYFCFIS 212
Query: 207 MCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIK 261
+ TIG GD P + F L+ + ++ + L M+ + E + L+ +
Sbjct: 213 LSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFR 267
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 86.9 bits (215), Expect = 1e-20
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 160 QSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRT 219
+ VL L L+ G Y E +DALYF +VT+ T+G G+ +P+T
Sbjct: 24 DKEFQVLFVLTFLTLTSGTIFYST-------VEGLRPLDALYFSVVTLTTVGDGNFSPQT 76
Query: 220 VPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGGHKESPGSYIIDVKKG 279
KVF+IL++ +G G V + + V K+ +Y ++V +
Sbjct: 77 DFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSIL--------SNRKKETDAYRLEVMEK 128
Query: 280 RMRIRMKVA 288
I K+A
Sbjct: 129 LEAIEKKLA 137
Score = 72.7 bits (178), Expect = 1e-15
Identities = 22/96 (22%), Positives = 40/96 (41%)
Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
R + + + L + G VE L LD+ Y SV+++TTVG G+ + ++ G
Sbjct: 20 RAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFG 79
Query: 340 RLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAK 375
++F +++ + V LA K
Sbjct: 80 KVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRK 115
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 79.5 bits (196), Expect = 2e-18
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 159 SQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPR 218
+ VL IL L G Y E +DALYF +VT+ T+G G+ +P+
Sbjct: 20 KDKEFQVLFVLTILTLISGTIFYST-------VEGLRPIDALYFSVVTLTTVGAGNFSPQ 72
Query: 219 TVPTKVFSILFVLVGFGFVDILLTGMVSYV 248
T K+F+IL++ +G G V + + V
Sbjct: 73 TDFGKIFTILYIFIGIGLVFGFIHKLAVNV 102
Score = 69.5 bits (170), Expect = 8e-15
Identities = 20/90 (22%), Positives = 40/90 (44%)
Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
R + + + +L + G VE L +D+ Y SV+++TTVG G+ + ++ G
Sbjct: 17 RAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFG 76
Query: 340 RLFASIWLLVSTLAVARAFLYLAEARVDKR 369
++F +++ + V LA
Sbjct: 77 KIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 78.3 bits (193), Expect = 4e-18
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 159 SQSIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPR 218
+ VL IL L G Y E +DALYF +VT+ T+GYGD +P+
Sbjct: 3 KDKEFQVLFVLTILTLISGTIFYST-------VEGLRPIDALYFSVVTLTTVGYGDFSPQ 55
Query: 219 TVPTKVFSILFVLVGFGFVDILLTGMVSYVL--DLQENYLLR 258
T K+F+IL++ +G G V + + V + N + R
Sbjct: 56 TDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR 97
Score = 70.2 bits (172), Expect = 3e-15
Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 281 MRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGR 340
M + + + +L + G VE L +D+ Y SV+++TTVGYGD + ++ G+
Sbjct: 1 MAKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGK 60
Query: 341 LFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVL 378
+F +++ + + F ++ + V+ + + ++
Sbjct: 61 IFTILYIFIG---IGLVFGFIHKLAVNVQLPSILSNLV 95
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 74.7 bits (184), Expect = 5e-17
Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 163 VRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPT 222
+ ++L++ + G + F E +LY+ VT+ T+GYGD +P T
Sbjct: 3 ATRILLLVLAVIIYGTAGFHF-------IEGESWTVSLYWTFVTIATVGYGDYSPHTPLG 55
Query: 223 KVFSILFVLVGFGFVDILLTGMVSYVL 249
F+ +++G G + + ++ +++
Sbjct: 56 MYFTCTLIVLGIGTFAVAVERLLEFLI 82
Score = 67.4 bits (165), Expect = 2e-14
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 285 MKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFAS 344
+ L +V+ I G HF+E W S Y + +++ TVGYGD + + G F
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTC 60
Query: 345 IWLLVSTLAVARAFLYLAEARV 366
+++ A A L E +
Sbjct: 61 TLIVLGIGTFAVAVERLLEFLI 82
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 71.7 bits (176), Expect = 6e-14
Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 161 SIVRQAVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTV 220
+ ++L++ + G + F E +LY+ VT+ T+GYGD +P T
Sbjct: 18 VPATRILLLVLAVIIYGTAGFHF-------IEGESWTVSLYWTFVTIATVGYGDYSPSTP 70
Query: 221 PTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIK 261
F++ +++G G + + ++ ++++ ++ L+ I
Sbjct: 71 LGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLID 111
Score = 69.8 bits (171), Expect = 2e-13
Identities = 23/96 (23%), Positives = 42/96 (43%)
Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
+++ L +V+ I G HF+E W S Y + +++ TVGYGD + + G
Sbjct: 13 PRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG 72
Query: 340 RLFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAK 375
F +++ A A L E +++ K+
Sbjct: 73 MYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMG 108
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 57.8 bits (140), Expect = 8e-11
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 166 AVVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVF 225
A L L + DA+++ + T T+GYGD P T +
Sbjct: 11 AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKV 70
Query: 226 SILFVLVGFGFVDILLTGMVS 246
+ + G L+T ++
Sbjct: 71 AEQVMKAGIEVF-ALVTAALA 90
Score = 43.6 bits (103), Expect = 9e-06
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 289 LALGVVVLCIGIGVGVMHFVEKLG-------WLDSFYLSVMSVTTVGYGDRAFKSMPGRL 341
A + + E+ + D+ + SV + TTVGYGDR + GR
Sbjct: 10 KAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRK 69
Query: 342 FASIWLL--VSTLAVARAFLYLAEARVDKRHRK 372
A + + A+ A L R ++ R
Sbjct: 70 VAEQVMKAGIEVFALVTAALATDFVRREEERRG 102
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 56.8 bits (137), Expect = 3e-10
Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 161 SIVRQAVVLLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGDIT 216
++ +A + L + + ++ AL++ + T T+GYGD+
Sbjct: 2 ALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLY 61
Query: 217 PRTVPTKVFSILFVLVGFGFVDILLTGMVS 246
P T+ ++ +++ ++ G L+T ++
Sbjct: 62 PVTLWGRLVAVVVMVAGITSFG-LVTAALA 90
Score = 44.1 bits (104), Expect = 1e-05
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 14/122 (11%)
Query: 287 VALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
A ++V+ + G + E+ + + + + SV + TTVGYGD ++ G
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67
Query: 340 RLFASIWLL--VSTLA-----VARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADI 392
RL A + ++ +++ +A F+ + R R K L
Sbjct: 68 RLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALHERF 127
Query: 393 DN 394
D
Sbjct: 128 DR 129
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 57.2 bits (138), Expect = 5e-10
Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 159 SQSIVRQAVVLLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGD 214
++ +A + L + + ++ AL++ + T T+GYGD
Sbjct: 27 GSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGD 86
Query: 215 ITPRTVPTKVFSILFVLVGFGFVDILLTGMVS 246
+ P T+ ++ +++ ++ G L+T ++
Sbjct: 87 LYPVTLWGRLVAVVVMVAGITSFG-LVTAALA 117
Score = 44.1 bits (104), Expect = 2e-05
Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 273 IIDVKKGRMRIRMKV-ALALGVVVLCIGIGVG--VMHFVEK-------LGWLDSFYLSVM 322
++ + GR ++ A V+L I + G + E+ + + + + SV
Sbjct: 18 LVKLLLGRHGSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVE 77
Query: 323 SVTTVGYGDRAFKSMPGRLFASIWLL--VSTLA-----VARAFLYLAEARVDKRHRKMAK 375
+ TTVGYGD ++ GRL A + ++ +++ +A F+ + + + R K
Sbjct: 78 TATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEK 137
Query: 376 WVLGQDMTVAEFLAADIDN 394
L D
Sbjct: 138 AAEEAYTRTTRALHERFDR 156
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 56.8 bits (137), Expect = 6e-10
Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 159 SQSIVRQAVVLLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGD 214
++ +A + L + + + DAL++ + T T+GYGD
Sbjct: 44 GSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGD 103
Query: 215 ITPRTVPTKVFSILFVLVGFGFV----DILLTGMVSYVLDLQENYLLRTIK 261
+ P T+ + +++ ++ G + T V + + +++ + K
Sbjct: 104 LYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSEK 154
Score = 42.5 bits (100), Expect = 5e-05
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 284 RMKVALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKS 336
A ++V+ + G + E+ + + D+ + SV + TTVGYGD +
Sbjct: 49 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVT 108
Query: 337 MPGRLFASIWLLVSTLAVA 355
+ GR A + ++ +
Sbjct: 109 LWGRCVAVVVMVAGITSYG 127
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 58.9 bits (142), Expect = 8e-10
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 167 VVLLILYLSLGV---TIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTK 223
++ LYL Y + DA +F + TM TIGYG + P
Sbjct: 51 TLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLAN 110
Query: 224 VFSILFVLVGFGFVDILLTGMVS 246
L L G + + + + +
Sbjct: 111 TLVTLEALCGMLGLAVAASLIYA 133
Score = 46.2 bits (109), Expect = 1e-05
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEKL-------GWLDSFYLSVMSVTTVGYGDR 332
+ + + L G+ ++ + + + D+F+ SV ++ T+GYG
Sbjct: 43 TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102
Query: 333 AFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKM 373
++ L L +A L AR + +
Sbjct: 103 IPIGPLANTLVTLEALCGMLGLAV-AASLIYARFTRPTAGV 142
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 55.5 bits (134), Expect = 9e-10
Identities = 12/96 (12%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 159 SQSIVRQAVVLLILYLSLGVTIY----WFNRHNFTASETHPVVDALYFCIVTMCTIGYGD 214
++ +A + L + + ++ AL++ T T+ YGD
Sbjct: 21 GSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGD 80
Query: 215 ITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLD 250
+ P T+ ++ +++ ++ G ++ + ++ +
Sbjct: 81 LYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116
Score = 40.1 bits (94), Expect = 2e-04
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 287 VALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDRAFKSMPG 339
A ++V+ + G + E+ + + + + + + TTV YGD ++ G
Sbjct: 29 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG 88
Query: 340 RLFASIWLLVSTLAVA 355
RL A + ++ +
Sbjct: 89 RLVAVVVMVAGITSFG 104
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 56.9 bits (138), Expect = 1e-09
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 198 DALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVS 246
DAL++ +VT T+GYGD+ P T KV I +L G + LL G VS
Sbjct: 168 DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISAL-TLLIGTVS 215
Score = 45.3 bits (108), Expect = 1e-05
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 256 LLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGW-- 313
LLR ++ ++ + +IR G V+L + G ++ VE
Sbjct: 104 LLRFLRILLIISRGSKFLSAIADAADKIR--FYHLFGAVMLTVLYGAFAIYIVEYPDPNS 161
Query: 314 -----LDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLL--VSTLAV 354
D+ + +V++ TTVGYGD + G++ +L +S L +
Sbjct: 162 SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL 209
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 56.8 bits (137), Expect = 5e-09
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 164 RQAVVLLILYLSLGVTI-----YWF----NRHNFTASETHPVVDALYFCIVTMCTIGYGD 214
+ ++ + + + Y F + + A+++ +VT+ T GYGD
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGS-----IPQAMWWAVVTLSTTGYGD 180
Query: 215 ITPRTVPTKVFSILFVLVGFGFVDILLTGMVS 246
P++ +V + ++ G G L G+++
Sbjct: 181 TIPQSFAGRVLAGAVMMSGIGIF-GLWAGILA 211
Score = 43.7 bits (103), Expect = 8e-05
Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 9/117 (7%)
Query: 284 RMKVALALGVVVLCIGIGVGVMHFVEKLGWL-------DSFYLSVMSVTTVGYGDRAFKS 336
+ + + + + +E+ + + +V++++T GYGD +S
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQS 185
Query: 337 MPGRLFASIWLL--VSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAAD 391
GR+ A ++ + + L + +R + W L + + + L
Sbjct: 186 FAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFVRNWQLVAAVPLFQKLGPA 242
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 56.2 bits (135), Expect = 9e-09
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 164 RQAVVLLILYLSLGVTIYW----FNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRT 219
+ + LLI +L +GV ++ F + S+ + DA ++ +V+M T+GYGD+ P T
Sbjct: 340 MRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 399
Query: 220 VPTKVFSILFVLVGFGFV 237
+ K+ L + G +
Sbjct: 400 IGGKIVGSLCAIAGVLTI 417
Score = 50.8 bits (121), Expect = 5e-07
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 18/166 (10%)
Query: 291 LGVVVLCIGIGV----GVMHFVEKLGWL-------DSFYLSVMSVTTVGYGDRAFKSMPG 339
LG+++ + IGV ++F E D+F+ +V+S+TTVGYGD ++ G
Sbjct: 343 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG 402
Query: 340 RLFASIWLL--VSTLA-----VARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADI 392
++ S+ + V T+A + F Y + + V +
Sbjct: 403 KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKS 462
Query: 393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKIT 438
+ +SKS+Y+ + + + L N IT
Sbjct: 463 RSASTISKSDYMEIQEGVNNSNEDFREENLKTANSTLANTNYVNIT 508
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 54.0 bits (129), Expect = 3e-08
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 167 VVLLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTKVFS 226
L ++ +L +Y V A +F + T+ T+GYGD+ P+TV +
Sbjct: 68 AALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIA 127
Query: 227 ILFVLVGFGFVDILLTGMV 245
L + VG L TG+V
Sbjct: 128 TLEIFVGM-SGIALSTGLV 145
Score = 43.6 bits (102), Expect = 6e-05
Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 280 RMRIRMKVALALGVVVLCIGIGVGVMHFVEK-------LGWLDSFYLSVMSVTTVGYGDR 332
++ + A + V+ + + + G++ +F+ SV ++ TVGYGD
Sbjct: 57 KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 116
Query: 333 AFKSMPGRLFASIWLLVSTLAVARAFLYLAEARVDKRHRKM 373
+++ A++ + V +A + + R + M
Sbjct: 117 HPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAKIM 157
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 52.8 bits (126), Expect = 9e-08
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 167 VVLLILYLSLGV---TIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTVPTK 223
V L +L+L L T+Y A +F + T+ T+GYGD+ P+TV
Sbjct: 47 VSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAH 106
Query: 224 VFSILFVLVGFGFVDILLTGMV 245
+ L + VG L TG
Sbjct: 107 WIATLEIFVGM-SSIALATGCA 127
Score = 43.2 bits (101), Expect = 1e-04
Identities = 18/102 (17%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 289 LALGVVVLCIGIGVGVMHFVEKL--------GWLDSFYLSVMSVTTVGYGDRAFKSMPGR 340
++L V+ L + ++ + G+ +F+ SV ++ TVGYGD +++
Sbjct: 47 VSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAH 106
Query: 341 LFASIWLLVSTLAVAR----AFLYLAEARVDKRHRKMAKWVL 378
A++ + V ++A AF+ +++ + ++ +
Sbjct: 107 WIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAV 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 7e-06
Identities = 62/414 (14%), Positives = 125/414 (30%), Gaps = 99/414 (23%)
Query: 91 LQQSSSIQDAVLL---PQQQQSSQLQSPQSWLIDPNYAFAKSNLHRSKTAPAMAVI---- 143
+ ++ + L +Q +Q ++ NY F S + + P+M
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 144 ------ND----LKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIY--------WFNR 185
ND K++ V + Q + +RQA LL L + V I W
Sbjct: 115 QRDRLYNDNQVFAKYN--VSRLQPYLK--LRQA--LLELRPAKNVLIDGVLGSGKTWV-- 166
Query: 186 HNFTASET---HPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLT 242
A + + V + F I + + + +P TV + +L+ +
Sbjct: 167 ----ALDVCLSYKVQCKMDFKIFWL-NLKNCN-SPETVLEMLQKLLYQIDPNW--TSRSD 218
Query: 243 GMVSYVLDLQE--NYLLRTIKGGGHKESPGSYII--DVKKGRM--------RI----RMK 286
+ L + L R +K K ++ +V+ + +I R K
Sbjct: 219 HSSNIKLRIHSIQAELRRLLK---SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 287 -VALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMS-VTTVGYGD---RAFKSMPGRL 341
V L + + H L + S++ D + P
Sbjct: 276 QVTDFLSAATTTH---ISLDHHSMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNP--- 327
Query: 342 FASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQ--DMTVAEFLAADIDNNGFVS 399
+S +A + A D + + L + ++ L F
Sbjct: 328 -----RRLSIIA---ESIRDGLATWD-NWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDR 377
Query: 400 -----KSEYVIYKLKEM--GKISEKDVMQI---CHKFDRLDTGNC-GKITLADL 442
S ++ L + + + DVM + HK+ ++ I++ +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 8e-06
Identities = 68/335 (20%), Positives = 116/335 (34%), Gaps = 76/335 (22%)
Query: 19 PPPLFPLPEDGEISIPMPITPSELKDR-LIF-GPVTSPKDASPIVDALTLSLASPTTSAS 76
P P D E P TP+EL + L + + P L L L
Sbjct: 42 PEPTEGFAADDE-----PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL-------- 88
Query: 77 SSSSTSFFSRDSSSLQQSSSIQDAVL-LPQQQQSSQLQSPQSWLIDPNYAFAKSNLHRSK 135
T F ++ L + + I L Q+ ++ +++ + + NY A+ R
Sbjct: 89 ----TEF---ENCYL-EGNDIHALAAKLLQENDTTLVKT-KELI--KNYITARIMAKRPF 137
Query: 136 TAPAM-AVINDLKHHDAVPKPQFGSQSIVRQAVVLLILYLSLGVTIYWFN--RHNFTASE 192
+ A+ + +A FG Q G T +F R +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQ----------------GNTDDYFEELRDLYQTYH 181
Query: 193 THPVVDALYFCIVTMCTIGYGDITPRTVPTKVFSILFVLVGFGF---VDILLTGMVSYVL 249
V D + F T+ + + V T+ +IL L D LL+ +S L
Sbjct: 182 VL-VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 250 D--LQ-ENYLLRTIKGGGHKESPGSYIIDVKKGRMRIRMKVALALGVVV-LCIGIGVGVM 305
+Q +Y++ T K G +PG R ++ + G+V + I
Sbjct: 241 IGVIQLAHYVV-TAKLLGF--TPGEL-------RSYLKGATGHSQGLVTAVAIAET---- 286
Query: 306 HFVEKLGWLDSFYLSVMSVTTVGY--GDRAFKSMP 338
W +SF++SV TV + G R +++ P
Sbjct: 287 -----DSW-ESFFVSVRKAITVLFFIGVRCYEAYP 315
Score = 45.4 bits (107), Expect = 3e-05
Identities = 60/365 (16%), Positives = 109/365 (29%), Gaps = 156/365 (42%)
Query: 14 KKPTPPPP---LFPLPEDGEISIPMPI-----------------TPSELKDRLIFGPVTS 53
+ P+ P L +P IS P+ I TP EL+ L G
Sbjct: 220 ENPSNTPDKDYLLSIP----ISCPL-IGVIQLAHYVVTAKLLGFTPGELRSYLK-GATGH 273
Query: 54 PKDASPIVDALTLSLASPTTSASSSSSTSFFSRDSSSL----------QQ--------SS 95
+ +V A+ + A + S SFF ++ + S
Sbjct: 274 SQG---LVTAVAI--------AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 96 SIQDAV----------L----LPQQQ-------------QSSQLQ--------------S 114
++D++ L L Q+Q Q++
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 115 PQSWLIDPNYAFAKSNLHRSKTAPAMAVINDLKHHD--AVP----KPQFGSQ-------- 160
PQS L Y L ++K AP+ D +P K +F ++
Sbjct: 383 PQS-L----YGL-NLTLRKAK-APS--------GLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 161 --SIVRQAVVLLILYL----------SLGVTIY----WFNRHNFTASETHPVVDALYFCI 204
++ A L+ L + + +Y + + S + +VD CI
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD----CI 483
Query: 205 VTMCTIGYGDITPRTVPTKVFSILFVLVGFGFVDILLTGMVSYVLDLQENYLLRTIKGGG 264
+ + + T + T + + F G G +G+ ++ +R I G
Sbjct: 484 IRLPV--KWETTTQFKATHI--LDF---GPGGA----SGLGVLTHRNKDGTGVRVIVAGT 532
Query: 265 HKESP 269
+P
Sbjct: 533 LDINP 537
Score = 38.9 bits (90), Expect = 0.004
Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 40/173 (23%)
Query: 18 PPPPLFPL---------PEDGEIS-IPMPITPSELKDRLI--FGPVTSP------KDASP 59
PP L+ L P + S IP SE K + F PV SP AS
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPF----SERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 60 IVDALTLSLASPTTSASSSS--STSFFSRDSSSLQQSSSIQDAVLLPQQQQS-----SQL 112
+++ L S ++ + + D S L+ S ++ + +
Sbjct: 438 LINK---DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 113 QSPQSWLID--PNYAFAKSNL-HRSKTAPAMAVI--NDLKHHDAVPKPQFGSQ 160
Q + ++D P A L HR+K + VI L D P +G +
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL---DINPDDDYGFK 544
Score = 38.1 bits (88), Expect = 0.007
Identities = 73/458 (15%), Positives = 130/458 (28%), Gaps = 158/458 (34%)
Query: 3 KEPLLCYLSPR---KKPTPPPP---LFPLPEDGEISIPMPI------------------- 37
KE + Y++ R K+P LF +G + + I
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-VAIFGGQGNTDDYFEELRDLYQ 178
Query: 38 TPSELKDRLI-------FGPVTSPKDASP-------IVDALTLSLASPTTSASSSSSTSF 83
T L LI + + DA I++ L +P S S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 84 -------------------------FSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSW 118
S + S + AV + ++ S +S+
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI------AETDSWESF 292
Query: 119 LIDPNYAFAKSNLH-------RSKTA------PAMAVINDLKHHDAVPKPQFGSQSIVRQ 165
+ + + R A P + + L++++ VP P ++ ++
Sbjct: 293 -----FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 166 AVVLLI------------LYLSLGVTIYWFN-RHNFTASETHPVV----DALY-FCIV-- 205
V + + +SL N N VV +LY +
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISL------VNGAKNL-------VVSGPPQSLYGLNLTLR 394
Query: 206 -TMCTIGYGDIT--PRTVPTKVFSILFVLVGFGFVDILLTGMVSYVL-DLQENYL----- 256
G D + P + FS F+ V F LL + DL +N +
Sbjct: 395 KAKAPSGL-DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 257 -LR-----TIKGG---GHKESPGSYIIDVKKGRMRIRMKVALALGVV-VLCIG----IGV 302
++ T G S I+D R+ ++ + +L G G+
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCII-RLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 303 GVM--HFVEKLGWLDSFYLSVMSVTTVGYG---DRAFK 335
GV+ + G + V+ T+ D FK
Sbjct: 513 GVLTHRNKDGTG------VRVIVAGTLDINPDDDYGFK 544
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 43.5 bits (103), Expect = 4e-05
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 378 LGQDMTVAE----FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGN 433
LG + AE D + +G + E++ M + E + F +LD
Sbjct: 66 LGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAA---FAKLDRSG 122
Query: 434 CGKITLADLMEA 445
G +T+ DL
Sbjct: 123 DGVVTVDDLRGV 134
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
F D D + + E L ++G + + + +C K+DR G+ G + L + + A
Sbjct: 43 FRQLDRDGSRSLDADE-FRQGLAKLGLVLDQAEAEGVCRKWDR--NGS-GTLDLEEFLRA 98
Score = 27.3 bits (61), Expect = 8.2
Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 398 VSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
+ + + KL+ + + F +LD + + +
Sbjct: 14 MDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQG 62
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 40.9 bits (96), Expect = 2e-04
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 391 DIDNNGFVSKSEYV-----IYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLME 444
D D++G +++ + + E ++S ++ Q+ + D G I L++
Sbjct: 108 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH 167
Query: 445 A 445
Sbjct: 168 V 168
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 40.9 bits (96), Expect = 3e-04
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMG-KISE 416
A + K + + Q + + + D D +G+VS E+ + L+ +G +++
Sbjct: 81 AAVNATDSLLKMKGEEKAMAVIQSLIM--YDCIDTDKDGYVSLPEFKAF-LQAVGPDLTD 137
Query: 417 KDVMQICHKFDRLDTGNCGKITLADLMEA 445
+ F+ LD G+I+ + +
Sbjct: 138 DKAITC---FNTLDFNKNGQISRDEFLVT 163
Score = 31.6 bits (72), Expect = 0.33
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEK 417
+ +A K + + + +S E + + K+ +
Sbjct: 36 YELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGE 95
Query: 418 D----VMQICHKFDRLDTGNCGKITLADLMEA 445
+ V+Q +D +DT G ++L +
Sbjct: 96 EKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAF 127
Score = 28.6 bits (64), Expect = 3.6
Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 387 FLAADIDNNGFVSKSEY--VIYKLKEMGKIS----EKDVMQICHKFDRLDTGNCGKITL 439
D+ +GF+S+ +Y + ++ ++ K+S E+ + D+L +I++
Sbjct: 20 MQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISV 78
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 40.5 bits (95), Expect = 3e-04
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 385 AEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444
F A D + + +S+ EY I+ +G + + FD +DT N G ++L + +
Sbjct: 98 LFFRAVDTNEDNNISRDEYGIF-FGMLG-LDKTMAPAS---FDAIDTNNDGLLSLEEFVI 152
Query: 445 A 445
A
Sbjct: 153 A 153
Score = 35.9 bits (83), Expect = 0.011
Identities = 6/62 (9%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 386 EFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQ--ICHKFDRLDTGNCGKITLADLM 443
+ + + ++ ++ + + K V++ + F +DT I+ +
Sbjct: 58 DNFLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYG 117
Query: 444 EA 445
Sbjct: 118 IF 119
Score = 28.1 bits (63), Expect = 4.1
Identities = 5/67 (7%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 387 FLAADIDNNGFVSKSEY--VIYKLKEMGKISEKDVMQICHKFDRL------DTGNCGKIT 438
F D D +G +++ ++ + + + ++ + + + I
Sbjct: 12 FNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGID 71
Query: 439 LADLMEA 445
+ +
Sbjct: 72 ETTFINS 78
Score = 27.0 bits (60), Expect = 8.5
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 14/45 (31%)
Query: 401 SEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
S+ + K+K F+R+D G IT D
Sbjct: 1 SDLWVQKMKTY--------------FNRIDFDKDGAITRMDFESM 31
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 40.1 bits (94), Expect = 3e-04
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEK 417
F+ A R+ + + A+ + A AD D +G V+ ++ L G + E
Sbjct: 77 FVTGAVKRLRDKPDRFAEMA--RPFLHAALGVADTDGDGAVTVADTARA-LTAFG-VPED 132
Query: 418 DVMQICHKFDRLDTGNCGKITLADLMEA 445
Q LDT GK+ +++ A
Sbjct: 133 LARQA---AAALDTDGDGKVGETEIVPA 157
Score = 33.9 bits (78), Expect = 0.048
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 389 AADIDNNGFVSKSEYVIY---KLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLME 444
AD D + +++ E+V +L++ + H DT G +T+AD
Sbjct: 63 IADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTAR 122
Query: 445 A 445
A
Sbjct: 123 A 123
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 41.0 bits (96), Expect = 4e-04
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 391 DIDNNGFVSKSE---YVIYKLKEMGK-ISEKDVMQICHK-FDRLDTGNCGKITLADLMEA 445
D+ GF+ + E V+ L E G + + + I K F+ DT + GKI +
Sbjct: 132 DLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSL 191
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 40.6 bits (95), Expect = 4e-04
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 358 FLYLAE--ARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKIS 415
++ A ++ + + L ++ + + D D +G V E +K +
Sbjct: 103 WVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTM-MKAFD-VP 160
Query: 416 EKDVMQICHKFDRLDTGNCGKITLADLMEA 445
++ F++ DT GK+ +L+
Sbjct: 161 QEAAYTF---FEKADTDKSGKLERTELVHL 187
Score = 31.3 bits (71), Expect = 0.43
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEK 417
LY + + + +D FL ++ + + ++V E+
Sbjct: 58 VLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERER 117
Query: 418 DVMQ--------ICHKFDRLDTGNCGKITLADLMEA 445
+ +D LD G + + +L
Sbjct: 118 ERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTM 153
Score = 28.6 bits (64), Expect = 2.8
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 414 ISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
+ K + ++ +FD D + GK+ + +++
Sbjct: 30 LHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYW 61
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 40.1 bits (94), Expect = 4e-04
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEK 417
F+ + E + ++ VLG + D + +G ++ E+ + L +G +S+
Sbjct: 80 FIRVTENLIFEQGEASFNRVLGPVVKGI-VGMCDKNADGQINADEFAAW-LTALG-MSKA 136
Query: 418 DVMQICHKFDRLDTGNCGKITLADLMEA 445
+ + F+++DT G+++L +L+ A
Sbjct: 137 EAAEA---FNQVDTNGNGELSLDELLTA 161
Score = 35.1 bits (81), Expect = 0.019
Identities = 6/62 (9%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHK-----FDRLDTGNCGKITLADLM 443
A + ++G +++ +++ + + E ++ D G+I +
Sbjct: 66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFA 125
Query: 444 EA 445
Sbjct: 126 AW 127
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 40.2 bits (94), Expect = 4e-04
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 5/88 (5%)
Query: 358 FLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEK 417
+L + V + + F D + + K EY G I +
Sbjct: 86 WLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTV-YMSYG-IPKS 143
Query: 418 DVMQICHKFDRLDTGNCGKITLADLMEA 445
D FD L G +T
Sbjct: 144 DCDAA---FDTLSDGGKTMVTREIFARL 168
Score = 34.0 bits (78), Expect = 0.046
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKI-SEKDVMQICHK-----FDRLDTGNCGKITLADL 442
AD + + V+K E++ + + + + + + K FD DT I +
Sbjct: 72 YADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEY 131
Query: 443 MEA 445
Sbjct: 132 STV 134
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 37.5 bits (88), Expect = 4e-04
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
F D++ +G VS E + K+ +E+ + I D D GN G+I + +
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDA-D-GN-GEIDQNEFAKF 61
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 40.2 bits (94), Expect = 5e-04
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 387 FLAADIDNNGFVSKSEY--VIYKL---KEMGKISEKDVMQICHK-FDRLDTGNCGKITLA 440
F D D++G +++ + ++ L E ++S ++ Q+ + D G I L+
Sbjct: 135 FRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 194
Query: 441 DLMEA 445
+
Sbjct: 195 EFQHV 199
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 39.8 bits (93), Expect = 6e-04
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 387 FLAADIDNNGFVSKSE--------YVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKI 437
F DI+ +G+++K E Y + + E Q F ++D G +
Sbjct: 98 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 157
Query: 438 TLADLMEANK 447
TL + +E+ +
Sbjct: 158 TLDEFLESXQ 167
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 39.9 bits (94), Expect = 6e-04
Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 378 LGQDMTVAE----FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGN 433
+G + D + +G + ++++ + + + ++ + F D
Sbjct: 86 IGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIP---FKFFDIDG 142
Query: 434 CGKITLADLMEA 445
GKI++ +L
Sbjct: 143 NGKISVEELKRI 154
Score = 27.2 bits (61), Expect = 8.2
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 371 RKMAKWVLGQDMT---VAEFLAA----DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQI 422
+K+A ++ + + + D+DN+G +S E ++ LK++G + D+ Q+
Sbjct: 40 KKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQE-ILDGLKKIGYQKIPPDIHQV 98
Query: 423 CHKFDRLDTGNCGKI 437
+D+ G+I
Sbjct: 99 ---LRDIDSNASGQI 110
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 40.1 bits (93), Expect = 0.001
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 169 LLILYLSLGVTIYWFNRHNFTASETHPVVDALYFCIVTMCTIGYGDITPRTV-PTKVFSI 227
LI Y+ + + + V A F I T TIGYG P + +
Sbjct: 65 WLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILL 124
Query: 228 LFVLVGFGFVDILLTGMV 245
L V V+ + G +
Sbjct: 125 LIQSVLGSIVNAFMVGCM 142
Score = 32.8 bits (74), Expect = 0.18
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 312 GWLDSFYLSVMSVTTVGYGDRAF--KSMPGRLFASIWLLVSTLAVA 355
G++ +F S+ + TT+GYG R K G + I ++ ++ A
Sbjct: 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNA 136
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 39.0 bits (91), Expect = 0.001
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 391 DIDNNGFVSKSEY--VIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLMEA 445
D+D + +S+ E V+ + + IS++ + I + D I+ + ++
Sbjct: 123 DLDKDDKISRDELLQVLRMMVGV-NISDEQLGSIADRTIQEADQDGDSAISFTEFVKV 179
Score = 28.6 bits (64), Expect = 3.4
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 401 SEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444
+ + ++K+ S + ++ +F LD G G ++ D
Sbjct: 10 RDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQR 53
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 39.2 bits (91), Expect = 0.001
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 387 FLAADIDNNGFVSKSE--------YVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKI 437
F DI+ +G+++K E Y + + E Q F ++D G +
Sbjct: 131 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 190
Query: 438 TLADLMEA 445
TL + +E+
Sbjct: 191 TLDEFLES 198
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 39.1 bits (91), Expect = 0.001
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 377 VLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGK 436
+ + + L + ++N G E++ ++L ++ + FD +D
Sbjct: 90 ITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVM---FDEIDASGNML 146
Query: 437 ITLADLMEA 445
+ + A
Sbjct: 147 VDEEEFKRA 155
Score = 27.6 bits (61), Expect = 6.8
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 415 SEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
+ + + F + D GK+ ++
Sbjct: 43 TAEAKQRRIELFKKFDKNETGKLCYDEVYSG 73
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 37.7 bits (88), Expect = 0.002
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 10/65 (15%)
Query: 380 QDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQ-ICHKFDRLDTGNCGKI 437
+ M + E + L M K+ ++ + +C F L I
Sbjct: 6 KSM-LLET---TSTTKMETKYEDM----LPVMAEKMDVEEFVSELCKGFSLLADPERHLI 57
Query: 438 TLADL 442
T L
Sbjct: 58 TAESL 62
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 38.4 bits (89), Expect = 0.002
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 358 FLYLAEARV--DKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKIS 415
+L + E + K + W Q+ F D+ +G V E+ Y K +
Sbjct: 82 YLAMWEKTIATCKSVADLPAWC--QNRIPFLFKGMDVSGDGIVDLEEFQNY-CKNFQ-LQ 137
Query: 416 EKDVMQICHKFDRLDTGNCGKITLADLMEA 445
DV + ++ + G L E
Sbjct: 138 CADVPAV---YNVITDGGKVTFDLNRYKEL 164
Score = 29.9 bits (67), Expect = 1.1
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKI-SEKDVMQICHK-----FDRLDTGNCGKITLA 440
ADI+ + VS EY+ K + S D+ C F +D G + L
Sbjct: 66 KGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLE 125
Query: 441 DLMEA 445
+
Sbjct: 126 EFQNY 130
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 38.0 bits (89), Expect = 0.002
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 378 LGQDMTVAE----FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGN 433
L AE + D D NG++ SE+V + + +S + ++ +FD D G+
Sbjct: 80 LDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDS-D-GS 137
Query: 434 CGKITLADLMEA 445
GKIT +L
Sbjct: 138 -GKITNEELGRL 148
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 37.1 bits (87), Expect = 0.002
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 378 LGQDMTVAE----FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGN 433
F + D D NG + ++E+ + G+ D + + + +D
Sbjct: 29 KRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDG 88
Query: 434 CGKITLADLMEA 445
GK+T ++
Sbjct: 89 DGKLTKEEVTSF 100
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 38.0 bits (89), Expect = 0.002
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
A DI++ G ++ +E++ + I + F+++D G I+ +D++
Sbjct: 81 ALDINDRGNITYTEFMAGCYRWK-NIESTFLKAA---FNKIDKDEDGYISKSDIVSL 133
Score = 32.7 bits (75), Expect = 0.13
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 371 RKMAKWVLGQDMTVAE---------FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQ 421
R + ++ +++V F D ++NG +S E + L +G I + D+ +
Sbjct: 20 RNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHRE-IYTVLASVG-IKKWDINR 77
Query: 422 ICHKFDRLDTGNCGKI 437
I LD + G I
Sbjct: 78 I---LQALDINDRGNI 90
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 39.0 bits (90), Expect = 0.002
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 186 HNFTASETHPVVDALYFCIVTMCTIGYG--DITPRTVPTKVFSILFVLVGFGFVDILLTG 243
+ + V A F I T TIGYG +T ++ +VG +D + G
Sbjct: 85 FKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGC-IIDSFMIG 143
Query: 244 MV 245
+
Sbjct: 144 AI 145
Score = 32.0 bits (72), Expect = 0.39
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 287 VALALGVVVLCIGIGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDRAF--KSMPGRLFAS 344
+AL G + G ++ G++ +F S+ + TT+GYG R +
Sbjct: 69 IALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVV 128
Query: 345 IWLLVSTLAVA 355
+ +V + +
Sbjct: 129 VQSIVGCIIDS 139
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 391 DIDNNGFVSKSEYVIYKLKEMGK-----ISEKDVMQICHK-FDRLDTGNCGKITLADLME 444
D+ GF+ + E + + + +SE + + K F + D N GKI + + +
Sbjct: 121 DLRQTGFIEREE-LKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKD 179
Query: 445 A 445
Sbjct: 180 F 180
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 37.5 bits (88), Expect = 0.003
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGN 433
+G ++ +E L AAD+DN+G + E++ L E + F D
Sbjct: 56 VGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAA---FTYFDKDG 112
Query: 434 CGKITLADLMEA 445
G IT +L +A
Sbjct: 113 SGYITPDELQQA 124
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 38.5 bits (89), Expect = 0.003
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 387 FLAADIDNNGFVSKSE--------YVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKI 437
F DI+ +G ++K E Y + + E ++ + F ++D G +
Sbjct: 171 FNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVV 230
Query: 438 TLADLMEA 445
T+ + +E
Sbjct: 231 TIDEFLET 238
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 37.9 bits (88), Expect = 0.003
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 358 FLYLAE--ARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMG-KI 414
++ + A + + L + A F D D NG ++ E+ Y K G
Sbjct: 84 YIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAY-TKAAGIIQ 142
Query: 415 SEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
S +D + F D G++ + ++
Sbjct: 143 SSEDCEET---FRVCDIDESGQLDVDEMTRQ 170
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 37.2 bits (87), Expect = 0.004
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHK-FDRLDTG 432
+G ++ +E AADID +G + E++ +++ + + F D
Sbjct: 39 VGSELMESEIKDLMDAADIDKSGTIDYGEFIAA----TVHLNKLEREENLVSAFSYFDKD 94
Query: 433 NCGKITLADLMEA 445
G ITL ++ +A
Sbjct: 95 GSGYITLDEIQQA 107
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 37.1 bits (86), Expect = 0.004
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 391 DIDNNGFVSKSE--------YVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLAD 441
D+DN+G+++++E Y + E + + F +D GK+TL +
Sbjct: 109 DLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQE 168
Query: 442 LMEA 445
E
Sbjct: 169 FQEG 172
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 37.5 bits (87), Expect = 0.004
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 391 DIDNNGFVSKSE--YVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLMEA 445
D D NG + K+E + ++ + + + F ++D N G++TL + +
Sbjct: 103 DADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFING 160
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 36.8 bits (85), Expect = 0.008
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 391 DIDNNGFVSKSE--------YVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLAD 441
DI+ +G+++K E Y + + E Q F ++D G +T+ +
Sbjct: 148 DINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDE 207
Query: 442 LMEA 445
+E+
Sbjct: 208 FIES 211
Score = 30.2 bits (68), Expect = 1.1
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 387 FLAADIDNNGFVSKSEYVI-YKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444
F A D D+NG VS +++ + G + EK + F+ D G IT ++++
Sbjct: 108 FNAFDTDHNGAVSFEDFIKGLSILLRGTVQEK----LNWAFNLYDINKDGYITKEEMLD 162
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 36.3 bits (84), Expect = 0.009
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 391 DIDNNGFVSKSE--YVIYKLKEMGKISEKDVM-QICHK-FDRLDTGNCGKITLADLMEA 445
D+D NG + + E +I ++ + + +E + + FD++D G+++L + ME
Sbjct: 98 DVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEG 156
Score = 31.3 bits (71), Expect = 0.48
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444
F D + +G++ EYV L + K ++ F D G I +L+
Sbjct: 58 FETFDFNKDGYIDFMEYVAA-LSLVLKGKVDQKLRWY--FKLYDVDGNGCIDRGELLN 112
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 35.6 bits (83), Expect = 0.010
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 378 LGQDMTVAEFLAADIDNNGFVSKSEYV-IY--KLKEMGKISEKDVMQICHKFDRLDTGNC 434
GQ+ T+AE + V +++ + ++ ++ FD+ T
Sbjct: 34 CGQNPTLAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDAT--- 90
Query: 435 GKITLADL 442
G I + +L
Sbjct: 91 GMIGVGEL 98
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 35.5 bits (82), Expect = 0.016
Identities = 10/58 (17%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 391 DIDNNGFVSKSEY--VIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLADLMEA 445
D+D +G +S+ E V+ + + +++E+ + I + D G ++ + ++
Sbjct: 124 DLDRDGKISRHEMLQVLRLMVGV-QVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS 180
Score = 27.0 bits (60), Expect = 9.9
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 415 SEKDVMQICHKFDRLDTGNCGKITLADLM 443
S+ ++++ H+F LD G ++ DL
Sbjct: 24 SQASLLRLHHRFRALDRNKKGYLSRMDLQ 52
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 34.8 bits (81), Expect = 0.016
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYV---IYKLKEMGKISEKDVMQICHKFDRLD 430
LG + E D + G ++ +++ K+ E +++++++ FD +
Sbjct: 35 LGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKD--TKEEILKAFKLFDDDE 92
Query: 431 TGNCGKITLADL 442
T GKI+ +L
Sbjct: 93 T---GKISFKNL 101
Score = 28.6 bits (65), Expect = 2.1
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
M + + +D T E L A D D G +S V KE+G ++++++ ++
Sbjct: 68 MTQKMSEKD-TKEEILKAFKLFDDDETGKISFKNLKRV---AKELGENLTDEELQEM--- 120
Query: 426 FDRLDTGNCGKI 437
D D G++
Sbjct: 121 IDEADRDGDGEV 132
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.016
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 14/40 (35%)
Query: 105 QQQQSSQLQSPQSWLIDPNYAFAKSNLHRSKTAPAMAVIN 144
++Q +LQ+ + YA +APA+A I
Sbjct: 18 EKQALKKLQAS----LKL-YA--------DDSAPALA-IK 43
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 35.2 bits (82), Expect = 0.017
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYV---IYKLKEMGKISEKDVMQICHKFDRLD 430
LG + E D D +G + E++ K+ E S +++++ F D
Sbjct: 57 LGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERD--SREEILKA---FRLFD 111
Query: 431 TGNCGKITLADLMEA 445
N G IT+ DL
Sbjct: 112 DDNSGTITIKDLRRV 126
Score = 27.5 bits (62), Expect = 6.2
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
M + +D + E L A D DN+G ++ + V KE+G ++E+++ ++
Sbjct: 90 MTAKMGERD-SREEILKAFRLFDDDNSGTITIKDLRRV---AKELGENLTEEELQEM--- 142
Query: 426 FDRLDTGNCGKI 437
D + +I
Sbjct: 143 IAEADRNDDNEI 154
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 35.2 bits (82), Expect = 0.020
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYV---IYKLKEMGKISEKDVMQICHKFDRLD 430
LGQ+ T AE D D NG + E++ K+K+ SE+++ + FD+ D
Sbjct: 40 LGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD--SEEEIREAFRVFDK-D 96
Query: 431 TGNCGKITLADL 442
GN G I+ A+L
Sbjct: 97 -GN-GYISAAEL 106
Score = 30.6 bits (70), Expect = 0.69
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
MA+ + D + E A D D NG++S +E +V + +G K+++++V ++
Sbjct: 73 MARKMKDTD-SEEEIREAFRVFDKDGNGYISAAELRHV---MTNLGEKLTDEEVDEM--- 125
Query: 426 FDRLDTGNCGKI 437
D G++
Sbjct: 126 IREADIDGDGQV 137
Score = 29.8 bits (68), Expect = 1.3
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 378 LGQDMTVAE----FLAADIDNNGFVSKSEYV---IYKLKEMGKISEKDVMQICHKFDRLD 430
LG+ +T E ADID +G V+ E+V K G + K+V++ +
Sbjct: 113 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNK--IRAIG 170
Query: 431 TGNCGKITL 439
L
Sbjct: 171 KMARVFSVL 179
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 34.8 bits (81), Expect = 0.023
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHK-FDRLDT 431
LG ++ E L D + + ++ MG KI ++D + + F D
Sbjct: 52 LGFELPKREILDLIDEYDSEGRHLMKYDDF----YIVMGEKILKRDPLDEIKRAFQLFDD 107
Query: 432 GNCGKITLADLMEA 445
+ GKI++ +L
Sbjct: 108 DHTGKISIKNLRRV 121
Score = 27.5 bits (62), Expect = 5.1
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
M + +L +D + E A D D+ G +S V KE+G ++++++ +
Sbjct: 85 MGEKILKRD-PLDEIKRAFQLFDDDHTGKISIKNLRRV---AKELGETLTDEELRAM--- 137
Query: 426 FDRLDTGNCGKI 437
+ D G+I
Sbjct: 138 IEEFDLDGDGEI 149
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 34.8 bits (80), Expect = 0.025
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 391 DIDNNGFVSKSE--YVIYKLKEMGK------ISEKDVMQICHK-FDRLDTGNCGKITLAD 441
D+D NG++SK+E ++ + +M E + K F ++DT GK++L +
Sbjct: 109 DLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEE 168
Query: 442 LMEA 445
+
Sbjct: 169 FIRG 172
Score = 29.8 bits (67), Expect = 1.3
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444
F D + +G + E++I L + + ++ F D G I+ A+++E
Sbjct: 69 FRTFDANGDGTIDFREFIIA-LSVTSRGKLEQKLKWA--FSMYDLDGNGYISKAEMLE 123
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 34.2 bits (78), Expect = 0.027
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 377 VLGQDMTVAE-----FLAADIDNNGFVSKSE--------YVIYKLKEMGKISEKDVMQIC 423
+M+ E F D D N + E + ++ +SE +++ I
Sbjct: 59 KPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINII 118
Query: 424 HK-FDRLDTGNCGKITLADLMEA 445
D N G I A+ ++
Sbjct: 119 DGVLRDDDKNNDGYIDYAEFAKS 141
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 33.4 bits (76), Expect = 0.032
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKIS------------EKDVMQIC-HKFDRLDTGN 433
F+ DI+++G + + E KE+ K+ E++ +++ H +DT
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 434 CGKITLADLMEANK 447
+TL + + + +
Sbjct: 86 DRLVTLEEFLASTQ 99
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 33.1 bits (76), Expect = 0.033
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKIT 438
F A D + +G + + E+ E+ + D + F RLD G IT
Sbjct: 33 FAACDANRSGRLEREEFRAL-CTELR-VRPADAEAV---FQRLDADRDGAIT 79
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 34.4 bits (79), Expect = 0.034
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 391 DIDNNGFVSKSE--YVIYKLKEMGK------ISEKDVMQICHK-FDRLDTGNCGKITLAD 441
D+DNNG +S E ++ + +M E + +K F+ +D G++TL +
Sbjct: 109 DLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEE 168
Query: 442 LMEA 445
E
Sbjct: 169 FCEG 172
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 33.2 bits (76), Expect = 0.034
Identities = 7/70 (10%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 371 RKMAKWVLGQDMTVAE-FLAADIDNNGFVSKSE--YVIYKLKEMGKISEKDVMQICHKFD 427
++ K V + + F D +S+ E + + + ++++ ++ ++
Sbjct: 13 ARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQ--ILTDEQFDRL---WN 67
Query: 428 RLDTGNCGKI 437
+ G++
Sbjct: 68 EMPVNAKGRL 77
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 34.4 bits (79), Expect = 0.036
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 391 DIDNNGFVSKSE--------YVIYKLKEMGKISEKDVMQICHK-FDRLDTGNCGKITLAD 441
D++++G+++ E Y + E K F +D G ITL +
Sbjct: 109 DLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDE 168
Query: 442 LMEA 445
E
Sbjct: 169 FREG 172
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 33.7 bits (78), Expect = 0.044
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYV---IYKLKEMGKI-SEKDVMQICHKFDRL 429
LGQ+ T E D D +G + E++ + ++KE K SE+++ F
Sbjct: 49 LGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANC---FRIF 105
Query: 430 DTGNCGKITLADL 442
D G I + +L
Sbjct: 106 DKNADGFIDIEEL 118
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 33.7 bits (78), Expect = 0.049
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYV---IYKLKEMGKI-SEKDVMQICHKFDRL 429
LGQ+ T E D D +G V E++ + +K+ K SE+++ + F
Sbjct: 48 LGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDL---FRMF 104
Query: 430 DTGNCGKITLADL 442
D G I L +L
Sbjct: 105 DKNADGYIDLEEL 117
Score = 27.5 bits (62), Expect = 6.0
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 373 MAKWVLGQD--MTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQIC 423
M + + + E D + +G++ E + L+ G I+E D+ ++
Sbjct: 81 MVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIM---LQATGETITEDDIEELM 137
Query: 424 HKFDR 428
D+
Sbjct: 138 KDGDK 142
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 34.1 bits (79), Expect = 0.050
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 389 AADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
D D +G + +E++ L ++S+K + F D N G+IT A+L
Sbjct: 95 QIDSDGSGKIDYTEFIAAALDRK-QLSKKLIYCA---FRVFDVDNDGEITTAELAHI 147
Score = 28.0 bits (63), Expect = 4.9
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 371 RKMAKWVLGQDMT---VAEFLAA----DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQIC 423
+K+A ++ Q V + + D D G+++K + + L++ G + +
Sbjct: 35 QKLAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQ-LKKGLEKDGLKLPYNFDLL- 92
Query: 424 HKFDRLDTGNCGKI 437
D++D+ GKI
Sbjct: 93 --LDQIDSDGSGKI 104
Score = 27.6 bits (62), Expect = 7.0
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 407 KLKEMG------KISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
K +++ + ++ DV ++ F LD G IT L +
Sbjct: 33 KFQKLAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKG 77
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 34.4 bits (79), Expect = 0.054
Identities = 10/101 (9%), Positives = 24/101 (23%), Gaps = 42/101 (41%)
Query: 386 EFLAA--------------DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDR--- 428
+A D ++NG +S+ E +G + + D
Sbjct: 179 TLVAVANDLAALVADFRKIDTNSNGTLSRKE-FREHFVRLGFDKKSVQDALFRYADEDES 237
Query: 429 ------------------------LDTGNCGKITLADLMEA 445
D G+++ ++ +
Sbjct: 238 DDVGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQKV 278
Score = 34.4 bits (79), Expect = 0.056
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 13/72 (18%)
Query: 378 LGQDMTVAE----FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGN 433
+ F+ + D G +S V D+ + F ++DT +
Sbjct: 151 YADTIPEGPLKKLFVMVENDTKGRMSYITLVA---------VANDLAALVADFRKIDTNS 201
Query: 434 CGKITLADLMEA 445
G ++ + E
Sbjct: 202 NGTLSRKEFREH 213
Score = 32.5 bits (74), Expect = 0.28
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGK-ISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
+ D +G+ +L+ +SE+D + F GK + DL +
Sbjct: 96 LKDLEDDASGYN--------RLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQV 147
Score = 27.9 bits (62), Expect = 6.5
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 385 AEFLAADIDNNGFVSKSEYVIYKLKE------MGKISEKDVMQICHKFDR 428
+ AD D +G +SK E +++ + + + K D
Sbjct: 257 ILYAFADFDKSGQLSKEE-----VQKVLEDAHIPESARKKFEHQFSVVDV 301
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 32.9 bits (76), Expect = 0.10
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHK-FDRLDT 431
LG T + D NG + + I + +G +++ + + Q + F D
Sbjct: 43 LGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDK 102
Query: 432 GNCGKITLADL 442
G I+ +
Sbjct: 103 EGNGYISTDVM 113
Score = 27.9 bits (63), Expect = 4.2
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 371 RKMAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQIC 423
R + + V + M E A D + NG++S + L E+ +S +D+ +
Sbjct: 78 RFLGEEVNPEQM-QQELREAFRLYDKEGNGYISTDVMREI---LAELDETLSSEDLDAMI 133
Query: 424 HKFDR 428
+ D
Sbjct: 134 DEIDA 138
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 32.1 bits (74), Expect = 0.17
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
+ + T A+++ A D + GF+S +E +V L +G ++S++DV +I
Sbjct: 72 YEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHV---LTALGERLSDEDVDEIIKL 128
Query: 426 FDRLDTGNCGKI 437
D + G +
Sbjct: 129 TDLQEDLE-GNV 139
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 31.7 bits (73), Expect = 0.20
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 378 LGQDMTVAEFL----AADIDNNGFVSKSEYV-----IYKLKEMGKISEKDVMQICHKFDR 428
+G T E + +++ G V ++V + I K++ +FD
Sbjct: 40 MGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDT 99
Query: 429 LDTGNCGKITLADLMEA 445
+ G+ G+I+ ++L EA
Sbjct: 100 -N-GD-GEISTSELREA 113
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 31.7 bits (73), Expect = 0.21
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFD 427
+ V G D A D D GF+ + + L+ MG S++++ +
Sbjct: 74 FGEKVSGTD-PEDALRNAFSMFDEDGQGFIPEDY-LKDLLENMGDNFSKEEIKNVWKDAP 131
Query: 428 RLDTGN 433
L
Sbjct: 132 -LKNKQ 136
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 31.4 bits (72), Expect = 0.26
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 373 MAKWVLGQDM-TVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICH 424
+ EF+ A D + G +S +E V LK +G +I+E I
Sbjct: 72 YEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNV---LKMLGERITEDQCNDIFT 128
Query: 425 KFDRLDTGNCGKI 437
D + + G I
Sbjct: 129 FCDIREDID-GNI 140
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 31.4 bits (72), Expect = 0.28
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFD 427
+ + G D + A D D G + KS + L G + + +++ + +
Sbjct: 84 FGEKLKGAD-PEDVIMGAFKVLDPDGKGSIKKSF-LEELLTTGGGRFTPEEIKNM---WA 138
Query: 428 RLDTGNCGKI 437
G +
Sbjct: 139 AFPPDVAGNV 148
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 29.4 bits (67), Expect = 0.29
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 372 KMAKWVLGQ-DMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKI 414
+ + VL +T AD+D NG ++ ++ ++ + I
Sbjct: 20 MLKRSVLRAITLTDDAKARADVDKNGSINAADVLLLSRYLLRVI 63
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 32.0 bits (72), Expect = 0.31
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 380 QDMTVAEFLAADIDNNGFVSKSEYV----------IYKLKEMGKI-SEKDVMQICHKFDR 428
Q + + A D +G + E + + + + + M+I + +
Sbjct: 56 QQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKI---WRK 112
Query: 429 LDTGNCGKITLADLMEA 445
D + G I+ A+L
Sbjct: 113 YDADSSGYISAAELKNF 129
Score = 30.4 bits (68), Expect = 0.95
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 371 RKMAKWVLGQDMTVAEFLAADIDNNGFVSKSE--YVIYKL--KEMGKISEKDVMQICHK- 425
R+ A + + D D++G++S +E + L + KI + +
Sbjct: 95 RREAPLDNSVEFMKI-WRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAM 153
Query: 426 FDRLDTGNCGKITLADLM 443
D G++ L DL
Sbjct: 154 MKIFDKNKDGRLDLNDLA 171
Score = 30.4 bits (68), Expect = 1.0
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 381 DMTVAEFLAA----DIDNNGFVSKSE------YVIYKLKEMGKISEKDVMQICHKF-DRL 429
++ A FL D D+NG++ E +++ KL+ KI+++ V QI F
Sbjct: 7 NLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAY 66
Query: 430 DTGNCGKITLADLMEA 445
D G++ + +L
Sbjct: 67 DATFDGRLQIEELANM 82
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 30.3 bits (69), Expect = 0.31
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 385 AEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHKFDR 428
E A D D NG++S SE +V + +G K+++++V Q+ + D
Sbjct: 9 EELKEAFKVFDKDQNGYISASELRHV---MINLGEKLTDEEVEQMIKEADL 56
Score = 27.9 bits (63), Expect = 2.0
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 378 LGQDMTVAEFLA----ADIDNNGFVSKSEYV---IYKLKEMGKISEKDVM 420
LG+ +T E AD+D +G V+ E+V + G +
Sbjct: 38 LGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVRGGGGGNGWSRLR 87
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 31.2 bits (71), Expect = 0.33
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDR 428
F+ D D +G V E + MG ++S + + I ++ +
Sbjct: 76 FMTVDQDGSGTVEHHELRQA-IGLMGYRLSPQTLTTIVKRYSK 117
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 30.9 bits (71), Expect = 0.36
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
MA+ + QD + E + A D D NG +S +E +V + +G K+++ +V ++
Sbjct: 72 MARKMKEQD-SEEELIEAFKVFDRDGNGLISAAELRHV---MTNLGEKLTDDEVDEM--- 124
Query: 426 FDRLDTGNCGKI 437
D G I
Sbjct: 125 IREADIDGDGHI 136
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 30.6 bits (70), Expect = 0.45
Identities = 8/59 (13%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 370 HRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFD 427
+ +++ F D + G+++KS+ + L G +++++ + + F
Sbjct: 74 SICVHDKDNVEELIKM-FAHFDNNCTGYLTKSQ-MKNILTTWGDALTDQEAIDALNAFS 130
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 30.7 bits (69), Expect = 0.45
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 391 DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
+ N F+ +Y + + K+ D G I + L
Sbjct: 25 EGINKQFLDDPKY------SNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRM 73
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 31.6 bits (72), Expect = 0.49
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 19/83 (22%)
Query: 371 RKMAKWVLGQDMTVAE--------FLAADIDNNGFVSKSE--------YVIYKLKEMGKI 414
+ A +G +T E F D + +G + K E K
Sbjct: 337 AQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKN 396
Query: 415 SEKDVMQICHKFDRLDTGNCGKI 437
E++V I +D G I
Sbjct: 397 VEEEVDNI---LKEVDFDKNGYI 416
Score = 29.7 bits (67), Expect = 2.0
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 29/78 (37%)
Query: 386 EFLAA--------------------DIDNNGFVSKSEYVIYKLKEMGK--ISEKDVMQIC 423
EF++ D D +G ++K E G ISEK +
Sbjct: 420 EFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELA----NLFGLTSISEKTWNDV- 474
Query: 424 HKFDRLDTGNCGKITLAD 441
D I +
Sbjct: 475 --LGEADQNKDNMIDFDE 490
Score = 29.3 bits (66), Expect = 3.1
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
D D NG++ SE++ + + + ++ ++ F+ DT GKIT +L
Sbjct: 405 LKEVDFDKNGYIEYSEFISVCM-DKQILFSEERLRRA--FNLFDTDKSGKITKEELANL 460
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 29.6 bits (67), Expect = 0.50
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFD 427
+ D + E A D D NG++S +E + + + +G K+++++V ++ + D
Sbjct: 18 FQSLMKDTD-SEEEIREAFRVEDKDGNGYISAAE-LRHVMTNLGEKLTDEEVDEMIREAD 75
Query: 428 R 428
Sbjct: 76 I 76
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 30.5 bits (70), Expect = 0.50
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFD 427
+ + G D A D + +GF+ + + L MG + ++++V ++ +
Sbjct: 65 FGEKLNGTD-PEDVIRNAFACFDEEASGFIHEDH-LRELLTTMGDRFTDEEVDEMYREAP 122
Query: 428 R 428
Sbjct: 123 I 123
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 30.6 bits (70), Expect = 0.52
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFD 427
+ + G D + A D ++ + L+ MG ++ ++ +
Sbjct: 76 FSDKLSGTD-SEETIRNAFAMFDEQETKKLNIEY-IKDLLENMGDNFNKDEMRMTFKEAP 133
Query: 428 RLDTGN 433
++ G
Sbjct: 134 -VEGGK 138
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 30.2 bits (69), Expect = 0.68
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 373 MAKWVLGQDM-TVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQI 422
+ +D T +F+ D + NG V +E +V L +G K++E++V ++
Sbjct: 72 LQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHV---LATLGEKMTEEEVEEL 126
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 30.7 bits (69), Expect = 0.68
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 387 FLAADIDNNGFVSKSE--------YVIYKLKEMGKISEKDVM--QICHK-FDRLDTGNCG 435
F D+D NG +SK+E + + +++ + + + + K + +
Sbjct: 113 FSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDD 172
Query: 436 KITLADLMEA 445
K+T + +E
Sbjct: 173 KLTEKEFIEG 182
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 28.7 bits (65), Expect = 0.77
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 391 DIDNNGFVSKSE--YVIYKLKEMGKISEKDVMQICHK 425
D + +G+V+ E + L +S+ V + K
Sbjct: 17 DANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAK 53
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 30.5 bits (69), Expect = 0.77
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLME 444
F A D + + + EYV L + + + + ++ F D G I +L++
Sbjct: 65 FRAFDTNGDNTIDFLEYVAA-LNLVLRGTLEHKLKWT--FKIYDKDRNGCIDRQELLD 119
Score = 30.5 bits (69), Expect = 0.87
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 14/73 (19%)
Query: 387 FLAADIDNNGFVSKSE-----YVIYKLKEMGKISEKDVMQICHK---------FDRLDTG 432
F D D NG + + E IYKLK+ + + Q F +D
Sbjct: 101 FKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDEN 160
Query: 433 NCGKITLADLMEA 445
G+++L + +E
Sbjct: 161 GDGQLSLNEFVEG 173
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 28.2 bits (64), Expect = 0.77
Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 385 AEFLAA----DIDNNGFVSKSEY--VIYKLKEMG-KISEKDVMQICHKFDR 428
+ D + +G +S E+ V +++D+++ + D
Sbjct: 1 SSAKRVFEKFDKNKDGKLSLDEFREV---ALAFSPYFTQEDIVKFFEEIDV 48
Score = 27.1 bits (61), Expect = 2.2
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 378 LGQDMTVAE----FLAADIDNNGFVSKSEYV 404
T + F D+D NG ++ E+
Sbjct: 30 FSPYFTQEDIVKFFEEIDVDGNGELNADEFT 60
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 30.3 bits (69), Expect = 0.79
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDR 428
F D DN+G + K+E + L G ++S++ + KFDR
Sbjct: 80 FRTYDRDNSGMIDKNE-LKQALSGFGYRLSDQFHDILIRKFDR 121
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 28.8 bits (65), Expect = 0.80
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 372 KMAKWVLGQD---MTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISE 416
+ ++VL + AD++ +G V+ S+ I + I +
Sbjct: 38 LLKRYVLKAVSTLPSSKAEKNADVNRDGRVNSSDVTILSRYLIRVIEK 85
>2vn6_B Endoglucanase A; cell adhesion, carbohydrate metabolism,
polysaccharide degradation, hydrolase, glycosidase,
cellulose degradation; 1.49A {Clostridium
cellulolyticum} PDB: 2vn5_B
Length = 64
Score = 28.3 bits (64), Expect = 0.82
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 372 KMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISE 416
+ K+++ D + D++ + V+ + I K +G +S+
Sbjct: 20 GLKKYIMAADHAYVK--NLDVNLDNEVNAFDLAILKKYLLGMVSK 62
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 29.8 bits (68), Expect = 0.87
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
K + E L A D + NG + ++E + L +G ++ +V ++ +
Sbjct: 64 YRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQL---LLNLGDALTSSEVEELMKE 120
Query: 426 FDR 428
Sbjct: 121 VSV 123
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 28.2 bits (64), Expect = 0.87
Identities = 7/53 (13%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 383 TVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHKFDR 428
+ + A D D +G ++ E + +G + ++++ + + D
Sbjct: 4 GLEDLQVAFRAFDQDGDGHITVDELRRA---MAGLGQPLPQEELDAMIREADV 53
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 30.4 bits (67), Expect = 0.96
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 1/108 (0%)
Query: 11 SPRKKPTPPPPLFPLPEDGEISIP-MPITPSELKDRLIFGPVTSPKDASPIVDALTLSLA 69
SP P P P G +P +PS+L+ P + + LSL
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF 62
Query: 70 SPTTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQS 117
T S +T ++S + + P + +S+ S
Sbjct: 63 EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSL 110
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 29.9 bits (68), Expect = 0.98
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 370 HRKMAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQI 422
+ +F+ A D ++ G VS + Y+ L +G K+++ +V ++
Sbjct: 68 EVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYM---LTGLGEKLTDAEVDEL 124
Query: 423 CHKFDR 428
+
Sbjct: 125 LKGVEV 130
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 28.6 bits (65), Expect = 1.0
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 393 DNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
++G + + + + ++SE+++ + F +DT N G IT +L +
Sbjct: 1 HSSGHIDDDDKHMAE-----RLSEEEIGGLKELFKMIDTDNSGTITFDELKDG 48
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 30.1 bits (68), Expect = 1.0
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
F+ +G + E ++ L+++G I+++ + + F R L +
Sbjct: 123 FVMNARARSGTLEPHE-ILPALQQLGFYINQRTSLLLHRLFARGM----AFCDLNCWIAI 177
Score = 29.4 bits (66), Expect = 1.8
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 13/59 (22%)
Query: 389 AADIDNNGFVSKSEYVIY--KLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
D D NG +S E++ ++ + F G + +++ A
Sbjct: 95 IFDTDFNGHISFYEFMAMYKFMELAYNL-----------FVMNARARSGTLEPHEILPA 142
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 29.8 bits (68), Expect = 1.0
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 15/72 (20%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
M + + + A D + G++ K+ L +G ++ + +
Sbjct: 68 MGRRMKQTT-SEDILRQAFRTFDPEGTGYIPKAALQDA---LLNLGDRLKPHEFAEFLGI 123
Query: 426 FDRLDTGNCGKI 437
+ G+I
Sbjct: 124 TETEK----GQI 131
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 30.4 bits (69), Expect = 1.1
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
AAD D NG++ SE+V + + + KD ++ F + D GKI++ +L
Sbjct: 396 LGAADFDRNGYIDYSEFVTVAM-DRKSLLSKDKLESA--FQKFDQDGNGKISVDELASV 451
Score = 30.1 bits (68), Expect = 1.7
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 19/83 (22%)
Query: 371 RKMAKWVLGQDMTVAE--------FLAADIDNNGFVSKSE--------YVIYKLKEMGKI 414
+ A + +T E F D + +G + + E
Sbjct: 328 AQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQ 387
Query: 415 SEKDVMQICHKFDRLDTGNCGKI 437
E +V I D G I
Sbjct: 388 IESEVDAI---LGAADFDRNGYI 407
Score = 30.1 bits (68), Expect = 1.7
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 25/76 (32%)
Query: 386 EFLAA--------------------DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHK 425
EF+ D D NG +S E + + + + K ++
Sbjct: 411 EFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDE--LASVFGLDHLESKTWKEM--- 465
Query: 426 FDRLDTGNCGKITLAD 441
+D+ N G + +
Sbjct: 466 ISGIDSNNDGDVDFEE 481
Score = 28.9 bits (65), Expect = 3.5
Identities = 5/32 (15%), Positives = 16/32 (50%)
Query: 414 ISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
S+++ ++ F +D G++ +L++
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDG 371
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 30.5 bits (67), Expect = 1.1
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 9/137 (6%)
Query: 12 PRKKPTPP-------PPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDAL 64
R++P PP P P + P T K + P L
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70
Query: 65 TLSLASP--TTSASSSSSTSFFSRDSSSLQQSSSIQDAVLLPQQQQSSQLQSPQSWLIDP 122
LS+ ++ + + S + + + L Q + S L
Sbjct: 71 RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130
Query: 123 NYAFAKSNLHRSKTAPA 139
A+ ++ A
Sbjct: 131 RELGARVRALKASAQDA 147
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 30.5 bits (68), Expect = 1.2
Identities = 15/75 (20%), Positives = 20/75 (26%), Gaps = 7/75 (9%)
Query: 16 PTPPPPLFPLPEDGEISIPMPITPSELK------DRLIFGPVTSPKDASPIVDALTLSLA 69
PP P P P P + R++ GP T P S
Sbjct: 38 ALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGP-TGPGTTSLAPAVRYGRQP 96
Query: 70 SPTTSASSSSSTSFF 84
P AS+ +
Sbjct: 97 GPEAPASAPPAAGRA 111
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 29.7 bits (67), Expect = 1.2
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDR 428
F++ D D +G V E + L MG ++S + V I ++
Sbjct: 109 FISFDTDRSGTVDPQE-LQKALTTMGFRLSPQAVNSIAKRYST 150
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 30.2 bits (68), Expect = 1.3
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
MA+ + D + E A D D NG++S +E +V + +G K+++++V ++
Sbjct: 374 MARKMKDTD-SEEEIREAFRVFDKDGNGYISAAELRHV---MTNLGEKLTDEEVDEM--- 426
Query: 426 FDRLDTGNCGKI 437
D G++
Sbjct: 427 IREADIDGDGQV 438
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 29.7 bits (67), Expect = 1.3
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 14/81 (17%)
Query: 371 RKMAKWVLGQDMT---VAEFLAA----DIDNNGFVSKSEYVIYK----LKEMG-KISEKD 418
K A + + DI+ NG ++ E V ++ +
Sbjct: 3 SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTK 62
Query: 419 VMQICHK--FDRLDTGNCGKI 437
Q+C + F +I
Sbjct: 63 RHQVCVEAFFRGCGMEYGKEI 83
Score = 29.7 bits (67), Expect = 1.6
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 391 DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKI 437
D D +G ++ E K G S++D F D N G +
Sbjct: 123 DKDGSGTITLDEWKAY---GKISGISPSQEDCEAT---FRHCDLDNAGDL 166
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 30.2 bits (67), Expect = 1.3
Identities = 13/92 (14%), Positives = 29/92 (31%)
Query: 9 YLSPRKKPTPPPPLFPLPEDGEISIPMPITPSELKDRLIFGPVTSPKDASPIVDALTLSL 68
Y++ ++P PPPP G + +P S SL
Sbjct: 22 YMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSL 81
Query: 69 ASPTTSASSSSSTSFFSRDSSSLQQSSSIQDA 100
++ +++++ +F + + A
Sbjct: 82 SNAVKQTTAAAAATFSEQVGGGSGGAGRGGAA 113
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome,
calcium-binding, hydrolase; NMR {Clostridium
thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Length = 71
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 373 MAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISE 416
+ ++VL AD++ +G V+ ++ I K + +I
Sbjct: 23 LKRYVLRSG-ISINTDNADLNEDGRVNSTDLGILKRYILKEIDT 65
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 30.4 bits (69), Expect = 1.4
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 361 LAEARVDKRHRKMAKWVLGQDMTVAE----FLAADIDNNGFVSKSEYVIYKLKEMGKISE 416
E K + + D+D +G + SE++ + + +
Sbjct: 357 YHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAI-DRTILLS 415
Query: 417 KDVMQICHKFDRLDTGNCGKITLADLMEA 445
++ M+ F D GKI+ +L +
Sbjct: 416 RERMERA--FKMFDKDGSGKISTKELFKL 442
Score = 30.0 bits (68), Expect = 1.7
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 23/74 (31%)
Query: 386 EFLAA--------------------DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHK 425
EF+A+ D D +G +S E + I +++ I
Sbjct: 402 EFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESI--- 458
Query: 426 FDRLDTGNCGKITL 439
+++D G++
Sbjct: 459 IEQVDNNKDGEVDF 472
Score = 28.5 bits (64), Expect = 4.7
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 25/89 (28%)
Query: 371 RKMAKWVLGQDMTVAE--------FLAADIDNNGFVSKSE--------------YVIYKL 408
+ A + +T + F D +N+G + + E +
Sbjct: 313 AQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLI 372
Query: 409 KEMGKISEKDVMQICHKFDRLDTGNCGKI 437
+ G E + + LD G I
Sbjct: 373 QNEGSTIEDQIDSL---MPLLDMDGSGSI 398
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 27.6 bits (62), Expect = 1.5
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 372 KMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVM 420
+A+ AD++N+G ++ + +I S + VM
Sbjct: 22 ILAQSFGKAIGNPGVNEKADLNNDGVINSDDAIILAQYFGKTKSAEVVM 70
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 29.0 bits (66), Expect = 1.5
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 373 MAKWVLGQDMTVAEFLAA----DIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHK 425
M++ + D + E L A D + +G +S +E +V L +G K+++ +V ++ +
Sbjct: 73 MSRQLKCND-SEQELLEAFKVFDKNGDGLISAAELKHV---LTSIGEKLTDAEVDEMLRE 128
Query: 426 FD 427
Sbjct: 129 VS 130
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease;
coronavirus, 3C-like proteinase, michael acceptor
inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious
bronchitis virus} PDB: 2q6d_A*
Length = 309
Score = 30.0 bits (67), Expect = 1.6
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 357 AFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVS-KSEYVIYKLKEMGKIS 415
A+LY A V + KW+ +++ ++ +NGF + I KL + +
Sbjct: 206 AWLYAAIISVKESSFSQPKWLESTTVSIEDYNRWAS-DNGFTPFSTSTAITKLSAITGV- 263
Query: 416 EKDVMQICHKFDRLDTGNCGKITL 439
DV ++ L
Sbjct: 264 --DVCKLLRTIMVKSAQWGSDPIL 285
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 29.8 bits (67), Expect = 1.7
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 380 QDMTVAEFLAA----DIDNNGFVSKSE------YVIYKLKEMGKISEKDVMQICHKFDRL 429
+T ++F D D +G++ E ++ K+ G ++ ++ +
Sbjct: 11 SLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQ- 69
Query: 430 DTGNCGKITLADLME 444
+ GKI + +L
Sbjct: 70 -RDD-GKIGIVELAH 82
Score = 29.5 bits (66), Expect = 1.8
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 390 ADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHK-----FDRLDTGNCGKITLADLME 444
D +N+G + +E + + + +++C K F+ D G I +L
Sbjct: 156 FDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDA 215
Query: 445 A 445
Sbjct: 216 L 216
Score = 28.3 bits (63), Expect = 4.9
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 368 KRHRKMAKWVLGQDMTVAEFLAA----DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQI 422
G M EF A D D NG++ ++E + LK++ K ++ +
Sbjct: 174 PVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENE-LDALLKDLCEKNKQELDINN 232
Query: 423 CHKFDR--LDTGNCGKITLADL 442
+ + + + GK+ DL
Sbjct: 233 ISTYKKNIMALSDGGKLYRTDL 254
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 28.0 bits (63), Expect = 1.9
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 384 VAEFLAA----DIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITL 439
+A+ D + +G +S SE LK +G ++ +V ++ +DT G I+
Sbjct: 10 IADRERIFKRFDTNGDGKISSSELGDA-LKTLGSVTPDEVRRM---MAEIDTDGDGFISF 65
Query: 440 AD---LMEANK 447
+ AN+
Sbjct: 66 DEFTDFARANR 76
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 28.7 bits (65), Expect = 2.0
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 378 LGQDMTVAE-FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGK 436
L Q+ V D D NG V E++ + K ++ ++ F D G
Sbjct: 34 LQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQ--KLRFAFRIYDMDKDGY 91
Query: 437 ITLADLMEA 445
I+ +L +
Sbjct: 92 ISNGELFQV 100
Score = 27.2 bits (61), Expect = 7.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 391 DIDNNGFVSKSEYVIYKLKEMG--KISEKDVMQICHKFDR-LDTGNCGKI 437
D+D +G++S E + LK M + + + QI K D G+I
Sbjct: 85 DMDKDGYISNGE-LFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRI 133
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 29.7 bits (67), Expect = 2.1
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
A D D NG++ SE+V + + + ++ ++ F D+ N GKI+ +L
Sbjct: 388 LDAVDFDKNGYIEYSEFVTVAM-DRKTLLSRERLERA--FRMFDSDNSGKISSTELATI 443
Score = 29.7 bits (67), Expect = 2.1
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 22/86 (25%)
Query: 371 RKMAKWVLGQDMTVAE--------FLAADIDNNGFVSKSE-----------YVIYKLKEM 411
+ A +G +T + F D + +G + ++E
Sbjct: 317 AQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLD 376
Query: 412 GKISEKDVMQICHKFDRLDTGNCGKI 437
E +V Q+ D +D G I
Sbjct: 377 ASAVEHEVDQV---LDAVDFDKNGYI 399
Score = 28.5 bits (64), Expect = 5.0
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 414 ISEKDVMQICHKFDRLDTGNCGKITLADLMEA 445
S+ + ++ F ++D G++ A+L+E
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELIEG 360
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 29.2 bits (66), Expect = 2.2
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 27/80 (33%)
Query: 387 FLAADIDNNGFVSKSE--YVI----YKL-----KEM---------GKISEKDVMQICHK- 425
F D +G + +E + Y++ + + G + D +++
Sbjct: 99 FRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFV 158
Query: 426 ------FDRLDTGNCGKITL 439
F D G++T
Sbjct: 159 CRVRNVFAFYDRERTGQVTF 178
Score = 27.3 bits (61), Expect = 8.3
Identities = 8/66 (12%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 380 QDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITL 439
+ + + + D +++G ++ E+ I + + F + D+ G++
Sbjct: 66 EKL-LHMY---DKNHSGEITFDEFK----DLHHFI-----LSMREGFRKRDSSGDGRLDS 112
Query: 440 ADLMEA 445
++ A
Sbjct: 113 NEVRAA 118
>2k9m_A RNA polymerase sigma factor RPON; core binding domain,
transcription; NMR {Aquifex aeolicus}
Length = 130
Score = 27.6 bits (62), Expect = 3.8
Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 380 QDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLD 430
++ +A L ++ GF+SKS + ++ ++ + S +++ ++ K RL+
Sbjct: 20 KEQELALELLNYLNEKGFLSKS---VEEISDVLRCSVEELEKVRQKVLRLE 67
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 28.8 bits (64), Expect = 4.2
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 304 VMHFVEKLGWLDSFYLSVMSVTTVGYGDRAFKSMPGRLFASIWLLVSTLAVARAFLYLAE 363
+ +E +G L + + +P I + +
Sbjct: 69 LTDLIEAIG-LGEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEK 127
Query: 364 ARV--DKRHRKMAKWVLGQDMTVAEFLA 389
V H + + QD+ + E+L
Sbjct: 128 QEVADLLLHPSDSLRIPEQDIPLGEYLR 155
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 27.0 bits (60), Expect = 4.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITL 439
FL D D +GFVS E V + G + + I + DT +CGK++
Sbjct: 16 FLKTDKDMDGFVSGLE-VREIFLKTG-LPSTLLAHI---WSLCDTKDCGKLSK 63
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 27.3 bits (61), Expect = 4.9
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 387 FLAADIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKI 437
F D D +GF+ + E ++ +S K+ + D GKI
Sbjct: 47 FHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTL---MAAGDKDGDGKI 97
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 27.7 bits (62), Expect = 4.9
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQICHKFDR 428
F++ D D +G V E + L MG +++ + V I ++
Sbjct: 78 FISFDSDRSGTVDPQE-LQKALTTMGFRLNPQTVNSIAKRYST 119
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 28.6 bits (63), Expect = 5.6
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 329 YGDRAFKSMPGRLFASI-WLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEF 387
+ +P I +ST + + L + K V +V+ F
Sbjct: 101 ARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLS-----QVSDSHESVSGF 155
Query: 388 LA 389
Sbjct: 156 FQ 157
>3hdu_A Putative thioesterase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 2.50A {Syntrophus aciditrophicus
SB}
Length = 157
Score = 27.6 bits (61), Expect = 5.9
Identities = 8/105 (7%), Positives = 31/105 (29%), Gaps = 8/105 (7%)
Query: 273 IIDVKKGRMRIRMKVALALGVVVLCIGIGVGVMHFVEKLGWLDS-FYLSVMSVTTVGYGD 331
+ + ++++ ++ L +++ +D L+
Sbjct: 34 VRFISPEQVKLSFEMRDEL-----IGNAIRRMLYGGVISSAIDMTAGLAAFMGFQEKMSG 88
Query: 332 RAFKSMPGRL--FASIWLLVSTLAVARAFLYLAEARVDKRHRKMA 374
+ + + +++ L V L ++ + K+A
Sbjct: 89 KPMEEKLAMIGRLSTMSLHVEYLRPGLGREFVCTGYNVRTGNKVA 133
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 26.9 bits (60), Expect = 6.2
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 387 FLAADIDNNGFVSKSE--YVIYKLKEMG-KISEKDVMQICHKFDRLDTGNCGKI 437
F D D +G++ E Y + K + +++E + + D D G+ GKI
Sbjct: 47 FRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADN-D-GD-GKI 97
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 27.2 bits (61), Expect = 7.2
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 373 MAKWVLGQDM-TVAEFLAA----DIDNNGFVSKSEYVIYKLKEMG-KISEKDVMQI 422
+ + T ++L D + NG V +E + + L +G K++E++V +
Sbjct: 74 LQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAE-LRHVLTTLGEKMTEEEVETV 128
Score = 26.8 bits (60), Expect = 9.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 378 LGQDMTVAEF---LAADIDNNGFVSKSEYV 404
LG+ MT E LA D+NG ++ ++
Sbjct: 116 LGEKMTEEEVETVLAGHEDSNGCINYEAFL 145
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 28.0 bits (61), Expect = 8.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 6 LLCYLSPRKKPTPPPPLFPLPEDGEI 31
LL P ++ PLPE+ E+
Sbjct: 396 LLNSFHPHEEDLSSISATPLPEEFEL 421
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 26.3 bits (58), Expect = 9.7
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 387 FLAADIDNNGFVSKSEYVIYKLKEMGKISEKDVMQICHKFDRLDTGNCGKITL 439
F + D + F+S S K+S ++ I ++ D G +TL
Sbjct: 28 FRSLQPDPSSFISGSV--AKNFFTKSKLSIPELSYI---WELSDADCDGALTL 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,857,905
Number of extensions: 422040
Number of successful extensions: 1374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1307
Number of HSP's successfully gapped: 215
Length of query: 447
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 350
Effective length of database: 3,993,456
Effective search space: 1397709600
Effective search space used: 1397709600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)