Query 013212
Match_columns 447
No_of_seqs 170 out of 1316
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 2E-129 4E-134 933.4 31.4 435 1-440 1-437 (443)
2 PLN00221 tubulin alpha chain; 100.0 3E-112 6E-117 876.6 33.8 446 1-447 1-450 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1E-110 3E-115 863.8 33.8 438 1-438 1-442 (448)
4 PTZ00010 tubulin beta chain; P 100.0 8E-107 2E-111 836.8 32.8 427 1-435 1-429 (445)
5 PLN00220 tubulin beta chain; P 100.0 2E-106 5E-111 835.5 33.2 426 1-434 1-428 (447)
6 cd02186 alpha_tubulin The tubu 100.0 3E-106 6E-111 831.0 31.9 430 2-431 1-434 (434)
7 PLN00222 tubulin gamma chain; 100.0 4E-105 9E-110 823.2 33.7 430 1-436 2-446 (454)
8 cd02188 gamma_tubulin Gamma-tu 100.0 6E-105 1E-109 818.2 30.9 421 2-428 1-431 (431)
9 cd02187 beta_tubulin The tubul 100.0 3E-104 7E-109 814.4 33.0 422 2-431 1-424 (425)
10 PTZ00387 epsilon tubulin; Prov 100.0 4E-104 8E-109 816.7 32.8 417 1-434 1-452 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 2E-100 5E-105 733.7 28.0 428 1-434 2-442 (448)
12 cd02190 epsilon_tubulin The tu 100.0 1.4E-97 3E-102 754.1 29.0 379 2-431 1-379 (379)
13 cd02189 delta_tubulin The tubu 100.0 7.5E-97 2E-101 763.5 32.7 412 4-429 2-445 (446)
14 cd06059 Tubulin The tubulin su 100.0 1.1E-89 2.4E-94 700.5 30.1 382 3-430 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 1.7E-82 3.6E-87 608.6 17.5 402 1-425 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 2.6E-71 5.7E-76 534.2 15.2 344 41-432 7-350 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 2.4E-64 5.3E-69 505.1 24.7 328 3-377 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 7.9E-50 1.7E-54 412.9 27.9 414 2-430 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 2.8E-50 6E-55 380.3 10.8 215 3-221 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 9.3E-37 2E-41 282.9 9.5 185 47-242 3-192 (192)
21 KOG2530 Members of tubulin/Fts 100.0 7.4E-35 1.6E-39 286.9 12.0 239 1-253 1-324 (483)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 5.3E-32 1.1E-36 271.9 15.3 221 1-268 1-233 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 4.6E-27 1E-31 231.8 13.9 200 4-256 3-207 (303)
24 TIGR00065 ftsZ cell division p 99.9 3.5E-25 7.6E-30 221.8 13.0 206 3-256 19-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 3.4E-25 7.3E-30 219.4 12.4 208 4-258 3-210 (304)
26 PRK13018 cell division protein 99.9 9.4E-24 2E-28 212.4 13.5 200 4-256 31-235 (378)
27 PF03953 Tubulin_C: Tubulin C- 99.9 8.4E-24 1.8E-28 182.9 10.1 126 259-389 1-126 (126)
28 PF14881 Tubulin_3: Tubulin do 99.9 3.5E-22 7.6E-27 182.2 12.0 149 80-240 17-180 (180)
29 PRK09330 cell division protein 99.9 1.8E-21 4E-26 196.0 12.1 207 3-256 15-221 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.6 9.1E-16 2E-20 130.2 4.9 69 2-74 1-73 (115)
31 COG0206 FtsZ Cell division GTP 99.4 2.2E-12 4.8E-17 127.8 12.5 148 103-259 74-221 (338)
32 smart00865 Tubulin_C Tubulin/F 98.4 1.7E-07 3.7E-12 79.5 2.7 114 244-388 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.5 0.0016 3.5E-08 66.0 13.9 102 90-192 100-219 (345)
34 PRK14484 phosphotransferase ma 70.6 4.3 9.3E-05 34.8 3.0 41 112-156 42-83 (124)
35 PF03610 EIIA-man: PTS system 69.9 5.4 0.00012 33.4 3.5 32 110-141 39-70 (116)
36 PF06908 DUF1273: Protein of u 69.8 18 0.00038 33.1 7.0 109 110-237 27-136 (177)
37 PLN02847 triacylglycerol lipas 67.6 19 0.00041 39.0 7.6 116 45-166 153-287 (633)
38 cd00006 PTS_IIA_man PTS_IIA, P 62.0 11 0.00024 31.8 4.0 31 111-141 40-70 (122)
39 PF12953 DUF3842: Domain of un 61.4 8 0.00017 33.3 2.8 29 139-167 6-35 (131)
40 TIGR00824 EIIA-man PTS system, 60.8 13 0.00027 31.4 4.0 32 111-142 41-72 (116)
41 PRK09461 ansA cytoplasmic aspa 58.0 32 0.00069 34.7 7.1 94 106-207 63-157 (335)
42 cd00411 Asparaginase Asparagin 47.9 61 0.0013 32.5 7.2 94 106-207 60-155 (323)
43 TIGR02364 dha_pts dihydroxyace 47.3 19 0.00042 30.8 3.0 41 112-155 42-84 (125)
44 PF00710 Asparaginase: Asparag 45.9 71 0.0015 31.9 7.3 93 106-206 54-147 (313)
45 PRK13660 hypothetical protein; 41.8 1.1E+02 0.0024 28.0 7.3 112 110-239 27-138 (182)
46 PF12210 Hrs_helical: Hepatocy 41.3 18 0.00039 29.4 1.7 54 373-431 27-89 (96)
47 cd00741 Lipase Lipase. Lipase 38.4 52 0.0011 28.6 4.5 64 102-169 2-65 (153)
48 TIGR02153 gatD_arch glutamyl-t 37.8 97 0.0021 32.2 7.0 91 106-203 120-211 (404)
49 TIGR00519 asnASE_I L-asparagin 37.6 85 0.0018 31.7 6.4 95 106-207 59-158 (336)
50 PF02353 CMAS: Mycolic acid cy 36.0 49 0.0011 32.3 4.3 65 96-167 28-93 (273)
51 smart00870 Asparaginase Aspara 35.2 1.2E+02 0.0025 30.5 6.9 95 107-207 58-155 (323)
52 PF03283 PAE: Pectinacetyleste 32.9 77 0.0017 32.4 5.3 50 103-159 132-183 (361)
53 PF01764 Lipase_3: Lipase (cla 32.0 14 0.0003 31.4 -0.2 64 100-167 35-101 (140)
54 PF01713 Smr: Smr domain; Int 31.5 1.8E+02 0.004 22.3 6.2 55 112-169 9-69 (83)
55 COG0303 MoeA Molybdopterin bio 31.5 80 0.0017 32.8 5.1 60 106-172 224-283 (404)
56 COG0572 Udk Uridine kinase [Nu 30.2 53 0.0012 31.0 3.3 27 133-160 9-35 (218)
57 PRK15088 PTS system mannose-sp 29.7 65 0.0014 32.4 4.0 33 110-142 41-73 (322)
58 PRK04183 glutamyl-tRNA(Gln) am 29.0 1.6E+02 0.0035 30.7 6.9 90 106-203 133-223 (419)
59 cd00519 Lipase_3 Lipase (class 28.3 61 0.0013 30.3 3.4 64 98-165 98-161 (229)
60 PF08259 Periviscerokin: Periv 28.1 26 0.00056 16.9 0.4 8 253-260 3-10 (11)
61 PF02879 PGM_PMM_II: Phosphogl 25.8 50 0.0011 26.7 2.1 27 129-155 20-46 (104)
62 PF03141 Methyltransf_29: Puta 25.5 1.3E+02 0.0027 32.1 5.3 49 114-171 101-149 (506)
63 KOG3178 Hydroxyindole-O-methyl 25.3 1.1E+02 0.0025 30.8 4.8 41 120-165 167-207 (342)
64 PF14824 Sirohm_synth_M: Siroh 24.9 93 0.002 19.7 2.6 23 130-157 4-26 (30)
65 COG2156 KdpC K+-transporting A 24.7 1.4E+02 0.003 27.5 4.7 80 65-149 46-134 (190)
66 COG0252 AnsB L-asparaginase/ar 24.7 1.6E+02 0.0035 30.0 5.8 96 107-207 81-177 (351)
67 PTZ00489 glutamate 5-kinase; P 24.0 3E+02 0.0065 26.7 7.4 49 153-203 87-135 (264)
68 PF09370 TIM-br_sig_trns: TIM- 23.9 41 0.0009 32.7 1.4 32 113-152 2-33 (268)
69 COG1929 Glycerate kinase [Carb 23.9 1.6E+02 0.0035 30.0 5.5 82 108-206 216-301 (378)
70 TIGR01732 tiny_TM_bacill conse 23.1 55 0.0012 20.0 1.3 13 138-150 1-13 (26)
71 TIGR00262 trpA tryptophan synt 22.0 2.4E+02 0.0053 27.2 6.3 74 116-209 154-234 (256)
72 COG1528 Ftn Ferritin-like prot 20.0 60 0.0013 29.3 1.5 49 378-432 95-145 (167)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1.8e-129 Score=933.44 Aligned_cols=435 Identities=60% Similarity=1.050 Sum_probs=417.4
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCC--CCCCCCccccccccccCCCccccceeeecCCCceeecccccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGDT--TVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 78 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~--~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 78 (447)
|||||+||+||||||||..||+++|.||||...+.. ..+...++.++||+|+++++|+||||+||+||+||+.++.++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 999999999999999999999999999999855431 122456789999999999999999999999999999999999
Q ss_pred ccccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013212 79 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 158 (447)
Q Consensus 79 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp 158 (447)
++.+|+|++++.+++|+|||||+|+|++|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|.|++|||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccc
Q 013212 159 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 238 (447)
Q Consensus 159 ~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 238 (447)
||.+.+|+|+|.++.++++|||||++|++++|.|+||+++++||++|+++|.+.+++++|+|.++|++||++|+++|+++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceecccccc
Q 013212 239 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 318 (447)
Q Consensus 239 r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 318 (447)
||||++|.||.+|.+|||||||+||+.++|+|+++..+..+++.++.++++++|+++|||++|+|++++|+++++++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhccc
Q 013212 319 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 398 (447)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~rk 398 (447)
..++++++++..++.|++.+|++|.|+++++++|+.+|.. ..+.+.++|+|+|+|+|.+.|+++.++|++||+||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~-----~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~kr 395 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSE-----PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKR 395 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcc-----cccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhh
Confidence 9999999999999999999999999999999999999832 33458899999999999999999999999999999
Q ss_pred cceecccccccChhhHHHHHHHHHHHHHHHHHHccCCCCCCC
Q 013212 399 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGED 440 (447)
Q Consensus 399 Aflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~~~~~~ 440 (447)
||||||+++|||++||.||++++++|.++|++++++.-++++
T Consensus 396 AFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~ 437 (443)
T COG5023 396 AFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDE 437 (443)
T ss_pred HHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchh
Confidence 999999999999999999999999999999999877665444
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=2.9e-112 Score=876.62 Aligned_cols=446 Identities=97% Similarity=1.493 Sum_probs=417.9
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCC----CCCCCCccccccccccCCCccccceeeecCCCceeecccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGDT----TVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 76 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~----~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~ 76 (447)
|||||+||+||||||||.+||+++++||+++.++.. ......+..++||+|+.+++|+||||+||+||++|+.++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 999999999999999999999999999999744321 1111235678999999999999999999999999999999
Q ss_pred ccccccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhh
Q 013212 77 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 156 (447)
Q Consensus 77 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 156 (447)
++++++|+|++++.+++|+|||||+|||..|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013212 157 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 236 (447)
Q Consensus 157 yp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 236 (447)
||++.+.+++|+|+...+++++++||++|++++|.+++|+++++||++|.++|.+.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999766789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceecccc
Q 013212 237 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 316 (447)
Q Consensus 237 ~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 316 (447)
++||||.++.||+++++||||||++||++++++|+++.....+..+++.+|++++|+++++++.++|+.++||++++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhc
Q 013212 317 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 396 (447)
Q Consensus 317 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 396 (447)
|++.+.++.+.+..++.+++..|++|+|+++++++|+++|...+...+.+.+.++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888899999999999999999999988777666666789999999999999999999999999999
Q ss_pred cccceecccccccChhhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCC
Q 013212 397 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDGDEGDEY 447 (447)
Q Consensus 397 rkAflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~ 447 (447)
||||||||+++||||+||.||+++|++|+++|+++..+..++ ..||++||
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~-~~~~~~~~ 450 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG-EGDEGEEY 450 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhcccccc-cccccccC
Confidence 999999999999999999999999999999999996555544 44667776
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.4e-110 Score=863.76 Aligned_cols=438 Identities=93% Similarity=1.449 Sum_probs=412.4
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCC----CCCCCCccccccccccCCCccccceeeecCCCceeecccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGDT----TVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 76 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~----~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~ 76 (447)
|||||+||+||||||||..||+++++||+++..+.. ......+..++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 999999999999999999999999999999644321 1111235678999999999999999999999999999999
Q ss_pred ccccccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhh
Q 013212 77 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 156 (447)
Q Consensus 77 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 156 (447)
++++++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013212 157 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 236 (447)
Q Consensus 157 yp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 236 (447)
||++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999766799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceecccc
Q 013212 237 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 316 (447)
Q Consensus 237 ~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 316 (447)
++||||.++.|++++++||||||++||++++++|+++.....++.++|.+|++++|+++++++.++|+.++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhc
Q 013212 317 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 396 (447)
Q Consensus 317 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 396 (447)
|++.+.++.+.+..++.+++..|++|+|+++++++|+++|...+...+.+.+.++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988899999999999999999999998777666666789999999999999999999999999999
Q ss_pred cccceecccccccChhhHHHHHHHHHHHHHHHHHHccCCCCC
Q 013212 397 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG 438 (447)
Q Consensus 397 rkAflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~~~~ 438 (447)
||||||||+++||||+||.||+++|++|+++|+++..+..+|
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~ 442 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADE 442 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999999999999999999999997554444
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=7.9e-107 Score=836.81 Aligned_cols=427 Identities=42% Similarity=0.817 Sum_probs=403.1
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCC--CCCCCccccccccccCCCccccceeeecCCCceeecccccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTT--VGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 78 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~--~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 78 (447)
|||||+||+||||||||.+||+++++||++...+... .+...+..++||+|+.+++|+||+|+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 9999999999999999999999999999986433211 11122467899999999999999999999999999998888
Q ss_pred ccccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013212 79 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 158 (447)
Q Consensus 79 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp 158 (447)
++.+|+|++++.+++|+|||||+|||..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccc
Q 013212 159 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 238 (447)
Q Consensus 159 ~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 238 (447)
++.+.+++|+|+...+++++++||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999976678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceecccccc
Q 013212 239 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 318 (447)
Q Consensus 239 r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 318 (447)
||||.+|.|+.++++||||||++||++++++|+.+..+..++.+++.+|++++|++++++++++|++++|+++++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999998777778899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhccc
Q 013212 319 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 398 (447)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~rk 398 (447)
+.+.++.+.+..++.++++.|++|+|+++++++|.++|.. .++++++++|+|+|..+|+++.++|++||+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~--------~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rr 392 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKG--------LKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRK 392 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcC--------ccceEEEecCCcHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999988888999999999999999999998753 26889999999999999999999999999999
Q ss_pred cceecccccccChhhHHHHHHHHHHHHHHHHHHccCC
Q 013212 399 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 435 (447)
Q Consensus 399 Aflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~ 435 (447)
||||||+++||||+||.||+++|++|+++|+++....
T Consensus 393 Aflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred chhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999987554
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=2.1e-106 Score=835.54 Aligned_cols=426 Identities=42% Similarity=0.822 Sum_probs=401.2
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCC--CCCCCCccccccccccCCCccccceeeecCCCceeecccccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGDT--TVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 78 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~--~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 78 (447)
|||||+||+||||||||.+||+++++||+++..+.. ..+...+..++||+|..+++|+||+|+||+||++|+.++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 999999999999999999999999999998643211 111122467889999999999999999999999999999998
Q ss_pred ccccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013212 79 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 158 (447)
Q Consensus 79 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp 158 (447)
++++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|++.|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccc
Q 013212 159 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 238 (447)
Q Consensus 159 ~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 238 (447)
++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||+.|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999976789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceecccccc
Q 013212 239 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 318 (447)
Q Consensus 239 r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 318 (447)
||||.++.++.+++++|||||++||+.++++|+.+.....++.+++.+++++++++++++++++|++++|+++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999988776678899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhccc
Q 013212 319 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 398 (447)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~rk 398 (447)
+.+.++.+.+..++.++++.|++|+|+++++++|.++|... +.++++|+|+|+|..+|++++++|++||+||
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rk 392 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCc--------ceeeEEecCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998888888899999999999999999987532 6789999999999999999999999999999
Q ss_pred cceecccccccChhhHHHHHHHHHHHHHHHHHHccC
Q 013212 399 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 434 (447)
Q Consensus 399 Aflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~ 434 (447)
||||||+++|||++||.||+++|++|+++|+++...
T Consensus 393 Aflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred cchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988643
No 6
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.8e-106 Score=831.02 Aligned_cols=430 Identities=88% Similarity=1.410 Sum_probs=406.1
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCC----CCCCCCccccccccccCCCccccceeeecCCCceeeccccc
Q 013212 2 RECISVHIGQAGIQVGNACWELYCLEHGIQMPGDT----TVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 77 (447)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~----~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~ 77 (447)
||||+||+||||||||.+||+++++||+++..+.. ..+.....+++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999744321 11113457889999999999999999999999999999988
Q ss_pred cccccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhc
Q 013212 78 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 157 (447)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey 157 (447)
+++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccc
Q 013212 158 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 237 (447)
Q Consensus 158 p~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 237 (447)
|++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999997667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceeccccc
Q 013212 238 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 317 (447)
Q Consensus 238 ~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 317 (447)
+||||..+.|+++++++|||||++||++++++|+++.....++.++|.+|++++|+++++|+.++|+.++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777889999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhcc
Q 013212 318 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK 397 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~r 397 (447)
++.+.++.+.+..++.++.+.|++|+|+++++++|+++|...+...+.+.++++++++|+|+|..+|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888888889999999999999999999987776666677899999999999999999999999999999
Q ss_pred ccceecccccccChhhHHHHHHHHHHHHHHHHHH
Q 013212 398 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 431 (447)
Q Consensus 398 kAflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~ 431 (447)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=4.4e-105 Score=823.25 Aligned_cols=430 Identities=32% Similarity=0.584 Sum_probs=396.3
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCC--CCCCccccccccccCCCccccceeeecCCCceeecccccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTV--GGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 78 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~--~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 78 (447)
|||||+||+||||||||.+||+++++||+++..+.... ....+..++||+|+.+++|+||||+||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 69999999999999999999999999999964432110 0123578899999999999999999999999999999888
Q ss_pred ccccCCcceeecCCC--CcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhh
Q 013212 79 YRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 156 (447)
Q Consensus 79 ~~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 156 (447)
++++|+|++++.+++ |+||||++||+ .|++..|+++|+||+++|.||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 889999999999886 69999999965 799999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCC-CCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhcc
Q 013212 157 YGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 235 (447)
Q Consensus 157 yp~~~~~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 235 (447)
||++.+++++|+|+.. .+++++++||++|+|++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9999999999999863 468899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccchhhhhhcCCCCccccccccccccccccc-cccccccCHHHHHHhhcCCCCCccccCCCC-----Cccc
Q 013212 236 ASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAFHEQLSVAEITNSAFEPSSMMAKCDPRH-----GKYM 309 (447)
Q Consensus 236 ~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~l 309 (447)
+++||||.+|.|+.++++||||||++||++++++|+.+.. ...++..++.++++++|+++++++.++|+. ++||
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997652 345677889999999999999999998887 9999
Q ss_pred ceeccccccCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHH
Q 013212 310 ACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDH 389 (447)
Q Consensus 310 s~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~ 389 (447)
|+++++||++.+.++.+.+..++.++++.|++|+|+++++++|.++|...+. .+.++++|+|+|+|..+|+++.+
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~i~~ 395 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTA-----HRVSGLMLANHTSIRHLFSKCLS 395 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCC-----CceEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999988889999999999999999988864322 36789999999999999999999
Q ss_pred HHHHhhccccceecccccccC----hhhHHHHHHHHHHHHHHHHHHccCCC
Q 013212 390 KFDLMYAKRAFVHWYVGEGME----EGEFSEAREDLAALEKDYEEVGAESA 436 (447)
Q Consensus 390 ~~~~m~~rkAflh~Y~~~Gme----e~eF~ea~~~l~~li~~Y~~~~~~~~ 436 (447)
+|++||+||||||||+++||+ ++||.||+++|++|+++|+++...+-
T Consensus 396 ~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y 446 (454)
T PLN00222 396 QYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDY 446 (454)
T ss_pred HHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999993 89999999999999999999874444
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=6e-105 Score=818.21 Aligned_cols=421 Identities=36% Similarity=0.652 Sum_probs=394.2
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCC--CCCCccccccccccCCCccccceeeecCCCceeeccccccc
Q 013212 2 RECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTV--GGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 79 (447)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~--~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 79 (447)
||||+||+||||||||.+||+++++||+++..+.... ....+..++||+|..+++|+||||+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 7999999999999999999999999999964432111 11245678999999999999999999999999999999888
Q ss_pred cccCCcceeecCCC--CcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhc
Q 013212 80 RQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 157 (447)
Q Consensus 80 ~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~dey 157 (447)
+++|+|++++.+++ |+||||++||+ .|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 88999999999887 99999999965 6999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCC-CCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013212 158 GKKSKLGFTVYPSPQV-STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 236 (447)
Q Consensus 158 p~~~~~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 236 (447)
|++.+++++|+|+... +++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998753 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccchhhhhhcCCCCccccccccccccccccc-cccccccCHHHHHHhhcCCCCCccccCC-CCCcccceecc
Q 013212 237 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAFHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLM 314 (447)
Q Consensus 237 ~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~~ 314 (447)
++||||.+|.|+.++++||||||++||++++++|+.+.. ...++..++.+|++.+++++++|+.++| +.++|||++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999999877 5678889999999999999999999999 88999999999
Q ss_pred ccccCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHh
Q 013212 315 YRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLM 394 (447)
Q Consensus 315 ~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m 394 (447)
+||++.+.++.+.+..++.+.++.|++|+|+++++++|+++|...++ .+.++++++|+|+|.++|++++++|++|
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~i~~kf~~m 394 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTA-----HRVSGLMLANHTSIASLFERILKQFDKL 394 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCC-----CceeEEEecCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888899999999999999998865432 2578999999999999999999999999
Q ss_pred hccccceecccccccC---hhhHHHHHHHHHHHHHHH
Q 013212 395 YAKRAFVHWYVGEGME---EGEFSEAREDLAALEKDY 428 (447)
Q Consensus 395 ~~rkAflh~Y~~~Gme---e~eF~ea~~~l~~li~~Y 428 (447)
|+||||||||+++||| ++||.||+++|++|+++|
T Consensus 395 f~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 395 RKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 9999999999999999 999999999999999998
No 9
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3.3e-104 Score=814.38 Aligned_cols=422 Identities=42% Similarity=0.827 Sum_probs=398.0
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCC--CCCCCccccccccccCCCccccceeeecCCCceeeccccccc
Q 013212 2 RECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTT--VGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 79 (447)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~--~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 79 (447)
||||+||+||||||||.+||+.+++||+++..+... .+...+..++||+|..+++|+||||+||+||++|+.++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 799999999999999999999999999986443211 111124678999999999999999999999999999988888
Q ss_pred cccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCC
Q 013212 80 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 159 (447)
Q Consensus 80 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~ 159 (447)
+.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccccc
Q 013212 160 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 239 (447)
Q Consensus 160 ~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 239 (447)
+.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999999866689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceeccccccC
Q 013212 240 FDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDV 319 (447)
Q Consensus 240 ~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 319 (447)
|||.+|.|+.++++||||||++||++++++|+++.....++.+++.+|++++|+++++++.++|++++||++++++||++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987767788899999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhcccc
Q 013212 320 VPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRA 399 (447)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~rkA 399 (447)
.+.++.+.+..++.++.+.|++|+|+++++++|+++|.. .+.++++++|+|+|..+|++++++|++||+|||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~--------~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkA 392 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG--------LKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 392 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCC--------cceeEEEecCCcHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999888899999999999999999987753 267899999999999999999999999999999
Q ss_pred ceecccccccChhhHHHHHHHHHHHHHHHHHH
Q 013212 400 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 431 (447)
Q Consensus 400 flh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~ 431 (447)
|||||+++||||+||.||+++|++|+++|+++
T Consensus 393 flh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 393 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred chhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999986
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=3.8e-104 Score=816.69 Aligned_cols=417 Identities=32% Similarity=0.606 Sum_probs=389.0
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhC-CCCCCCCCCCCCCccccccccccC-----CC--ccccceeeecCCCceee
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHG-IQMPGDTTVGGGDDAFNTFFSETG-----AG--KHVPRAVFVDLEPTVID 72 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~-~~~~~~~~~~~~~~~~~~~f~e~~-----~~--~~~pR~llvD~e~~~i~ 72 (447)
|||||+||+||||||||.+||+++++||+ ++..+ ......++||++.+ .+ +|+||||+||+||++|+
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g-----~~~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~ 75 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANP-----QYDDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLN 75 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCC-----cccccccceecccccccccCCCccccCcccccCCCccHHH
Confidence 99999999999999999999999999999 54322 12457889999533 23 49999999999999999
Q ss_pred ccccccccccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHH
Q 013212 73 EVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER 152 (447)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~ 152 (447)
+++.++++++|+|++++.+++|+||||+.|||..|++..|+++|+||+++|+||++|||+++||+|||||||+|+.|+|.
T Consensus 76 ~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~ 155 (465)
T PTZ00387 76 QILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGM 155 (465)
T ss_pred HhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCC---------------
Q 013212 153 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER--------------- 217 (447)
Q Consensus 153 l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~--------------- 217 (447)
|+|+||++.+++++|+|+. .++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..
T Consensus 156 l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (465)
T PTZ00387 156 LEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPH 234 (465)
T ss_pred HHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccccc
Confidence 9999999999999999985 578899999999999999999999999999999999988777653
Q ss_pred ------------CCccchhHHHHHHhhhccccccCCCCcccchhhhhhcCCCCccccccccccccccccccccccccCHH
Q 013212 218 ------------PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVA 285 (447)
Q Consensus 218 ------------~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~ 285 (447)
+.|+++|++||++|+++|+++||||.+|.|+.++.+||||||++||++++++|+.+.....++..+|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s~~ 314 (465)
T PTZ00387 235 KYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRRLD 314 (465)
T ss_pred ccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCCHH
Confidence 78999999999999999999999999999999999999999999999999999988777778889999
Q ss_pred HHHHhhcCCCCCccccCCCCCcccceeccccccCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcc
Q 013212 286 EITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLA 365 (447)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~ 365 (447)
+|+.++|+++++|+.++|+.++||++++++||+..+.++.+.+..++. ...|++|+|+++++++|+++|...
T Consensus 315 ~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~------ 386 (465)
T PTZ00387 315 QMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQ------ 386 (465)
T ss_pred HHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCC------
Confidence 999999999999999999999999999999999889999988887764 489999999999999999988643
Q ss_pred cccceEEEeecCcchHHHHHHHHHHHHHhhccccceecccccccChhhHHHHHHHHHHHHHHHHHHccC
Q 013212 366 KVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 434 (447)
Q Consensus 366 ~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~rkAflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~ 434 (447)
+.++++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++|+++|++++..
T Consensus 387 --~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 387 --PYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred --ceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999999999999999 7999999999999999999999999743
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=2.1e-100 Score=733.75 Aligned_cols=428 Identities=34% Similarity=0.614 Sum_probs=396.5
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCC--CCCCCCCccccccccccCCCccccceeeecCCCceeecccccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGD--TTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 78 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~--~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 78 (447)
||||||+|+||||||||.+||++||.||++...+- ....+..++.++||++..++.|+|||||||+||+||+.+..++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 58999999999999999999999999999984432 1112456789999999999999999999999999999999999
Q ss_pred ccccCCcceeecC--CCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhh
Q 013212 79 YRQLFHPEQLISG--KEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 156 (447)
Q Consensus 79 ~~~~~~~~~~~~~--~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 156 (447)
++.+|+|+|++.. ++|+|||||.|| .+|+++.|+++|.|+|++|.||+|+||+++||++||||||+|+.|+|.|+|+
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY-~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGY-SQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCccccccccc-ccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999999854 579999999997 5699999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCC-CCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhcc
Q 013212 157 YGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 235 (447)
Q Consensus 157 yp~~~~~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 235 (447)
||||.+.+++|||... .++++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.++.|+|.++|++||..|++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999863 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccchhhhhhcCCCCccccccccccccccccccccc--cccCHHHHHHhhcCCCCCccccCC---CCCcccc
Q 013212 236 ASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFH--EQLSVAEITNSAFEPSSMMAKCDP---RHGKYMA 310 (447)
Q Consensus 236 ~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~ls 310 (447)
.++||||+++.+|..+...|+|+|++||+++++.|+++...... +.-++.+.++.++.++++|+...+ .+..|++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 99999999999999999999999999999999999998765544 677888999999999999988765 3357899
Q ss_pred eeccccccCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHH
Q 013212 311 CCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHK 390 (447)
Q Consensus 311 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~ 390 (447)
...++-|.+.+..+...+..++.++...|++|.|.++.+++....|...+. ++.|+.+|+|+|+|..+|++++.+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-----~~vSglml~N~t~i~~lfe~~~~q 395 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-----HRVSGLMLANSTSIVSLFERILGQ 395 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-----cceeeeeeccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888876544 478999999999999999999999
Q ss_pred HHHhhccccceecccccccChh---hHHHHHHHHHHHHHHHHHHccC
Q 013212 391 FDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDYEEVGAE 434 (447)
Q Consensus 391 ~~~m~~rkAflh~Y~~~Gmee~---eF~ea~~~l~~li~~Y~~~~~~ 434 (447)
|+||++||||||+|+++||+++ ||.|+++.+++|+++|..+.+.
T Consensus 396 ydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~ 442 (448)
T KOG1374|consen 396 YDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQP 442 (448)
T ss_pred HHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999887 9999999999999999988543
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.4e-97 Score=754.11 Aligned_cols=379 Identities=36% Similarity=0.705 Sum_probs=362.5
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeeccccccccc
Q 013212 2 RECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQ 81 (447)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 81 (447)
||||+||+||||||||.+||+.+++|| |+||+|+||+||++|++++.+++++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh----------------------------~~pR~v~iD~e~~~i~~i~~~~~~~ 52 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH----------------------------LKARAVLIDMEEGVVNEILKGPLRD 52 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh----------------------------cCCcceeccCChhHHHHHhcCcccc
Confidence 799999999999999999999999887 7799999999999999999988889
Q ss_pred cCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcc
Q 013212 82 LFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 161 (447)
Q Consensus 82 ~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~ 161 (447)
+|+|++++.+++|+||||+.||+..|++..|+++|+||+++|+||++|||+++||++||||||+|+.|+|.|+|+||++.
T Consensus 53 ~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~ 132 (379)
T cd02190 53 LFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVY 132 (379)
T ss_pred ccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccCC
Q 013212 162 KLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFD 241 (447)
Q Consensus 162 ~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 241 (447)
+++++|+|+.. +++++++||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|+++|||
T Consensus 133 ~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~rf~ 199 (379)
T cd02190 133 RFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMRFE 199 (379)
T ss_pred eEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceeecc
Confidence 99999999985 788999999999999999999999999999997 69999999999999999999999
Q ss_pred CCcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceeccccccCCh
Q 013212 242 GALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 321 (447)
Q Consensus 242 ~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 321 (447)
|.+|.|+.++.++|||||++||++++++|+++.....++..++.+|++.+++++++|+.++|+.++|+++++++||+..+
T Consensus 200 g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~~~ 279 (379)
T cd02190 200 GSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNVSV 279 (379)
T ss_pred cccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCCCH
Confidence 99999999999999999999999999999998776777889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhccccce
Q 013212 322 KDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFV 401 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~rkAfl 401 (447)
.++.+.+.+++.+ ..|++|+|+++++++|.++|... ++++++++|+|+|..+|++++++|++||+|||||
T Consensus 280 ~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAfl 349 (379)
T cd02190 280 SDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGH--------SYSLLCLANNTCIKGTFTELKERFMKLYKRKAHL 349 (379)
T ss_pred HHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCc--------ceeEEEecCccHHHHHHHHHHHHHHHHHhcccch
Confidence 9999888877665 67999999999999999887532 6789999999999999999999999999999999
Q ss_pred ecccccccChhhHHHHHHHHHHHHHHHHHH
Q 013212 402 HWYVGEGMEEGEFSEAREDLAALEKDYEEV 431 (447)
Q Consensus 402 h~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~ 431 (447)
|||+++||||+||.||+++|++++++|+++
T Consensus 350 h~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 350 HHYTQVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred hhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999874
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=7.5e-97 Score=763.47 Aligned_cols=412 Identities=26% Similarity=0.461 Sum_probs=375.8
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeeccccccc--cc
Q 013212 4 CISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY--RQ 81 (447)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~--~~ 81 (447)
||+||+||||||||.+||+++++||+++..+... ...+..++||.|..+++|+||+|+||+||++|++++.+.. ++
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~--~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~ 79 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK--YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTW 79 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc--ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCccc
Confidence 8999999999999999999999999986332211 1245778999999999999999999999999999988653 36
Q ss_pred cCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcc
Q 013212 82 LFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 161 (447)
Q Consensus 82 ~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~ 161 (447)
.|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+++
T Consensus 80 ~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~ 159 (446)
T cd02189 80 KYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESL 159 (446)
T ss_pred ccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccC-
Q 013212 162 KLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF- 240 (447)
Q Consensus 162 ~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~- 240 (447)
+++++|+|+. .+++++|+||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++||+.|+++|+|.|+
T Consensus 160 ~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r~~ 238 (446)
T cd02189 160 LLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSLDS 238 (446)
T ss_pred eeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhhcc
Confidence 9999999986 58999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC-------CcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhc---CCCCCccc----------
Q 013212 241 DG-------ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAF---EPSSMMAK---------- 300 (447)
Q Consensus 241 ~~-------~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~---------- 300 (447)
++ ..+.++.+++++|||||++||++++++|+++.....++.++|.++++.++ .+++++..
T Consensus 239 ~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~~~ 318 (446)
T cd02189 239 TGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRPEG 318 (446)
T ss_pred CcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccccc
Confidence 53 36899999999999999999999999999987777788999999999865 56666544
Q ss_pred ---------cCCCCCcccceeccccccCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceE
Q 013212 301 ---------CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 371 (447)
Q Consensus 301 ---------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~ 371 (447)
++++.++||++++++||+..+.++...+ ++...|++|+|+++++++|.++|... +.++++
T Consensus 319 ~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~------~~~~s~ 387 (446)
T cd02189 319 SAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFS------KYEKSV 387 (446)
T ss_pred ccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcC------CcceeE
Confidence 4567899999999999988777776432 46688999999999999999877531 237899
Q ss_pred EEeecCcchHHHHHHHHHHHHHhhccccceecccccccChhhHHHHHHHHHHHHHHHH
Q 013212 372 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 429 (447)
Q Consensus 372 ~~l~N~t~i~~~l~~l~~~~~~m~~rkAflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~ 429 (447)
++++|+|+|..+|+++++||++||+||||||||+++||||+||.||+++|++++++|+
T Consensus 388 ~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 388 TLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred EEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999996
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=1.1e-89 Score=700.51 Aligned_cols=382 Identities=49% Similarity=0.890 Sum_probs=362.4
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeecccccccccc
Q 013212 3 ECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 82 (447)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~ 82 (447)
|||+||+||||||||.+||+.+ |+||+||++++.++.++.+.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-------------------------------------i~iD~e~~~i~~i~~~~~~~~ 43 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-------------------------------------ILVDLDPRVINEILQGQLSKL 43 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-------------------------------------HcccCCcchhhhhhccccccc
Confidence 8999999999999999999983 999999999999998888889
Q ss_pred CCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcce
Q 013212 83 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 162 (447)
Q Consensus 83 ~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~ 162 (447)
|+|++++.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|+.|+|.|+|+||++.+
T Consensus 44 ~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i 123 (382)
T cd06059 44 FDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILI 123 (382)
T ss_pred CCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccCCC
Q 013212 163 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 242 (447)
Q Consensus 163 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 242 (447)
++++|+|+...+++++++||++|++++|.+++|+++|+||++|.++|.+.+.+..++|+++|++||++|+++|.++|+||
T Consensus 124 ~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~g 203 (382)
T cd06059 124 NTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPG 203 (382)
T ss_pred EeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccCC
Confidence 99999999865558999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred CcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceeccccccCChh
Q 013212 243 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPK 322 (447)
Q Consensus 243 ~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~ 322 (447)
.+|.|+.+++++|||||++||++++++|+++.....+...++.+++++++++++++..++++.++|+++++++||+..+.
T Consensus 204 ~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~~~ 283 (382)
T cd06059 204 YLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVFQS 283 (382)
T ss_pred CcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999987766778899999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhcccccee
Q 013212 323 DVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVH 402 (447)
Q Consensus 323 ~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~rkAflh 402 (447)
++.+.+..++.+.... +|+|+++++++|.++|. . +.++++++++|+|+|..+|++++++|++||+||||||
T Consensus 284 ~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~-~------~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh 354 (382)
T cd06059 284 EIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPR-A------ELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLH 354 (382)
T ss_pred HHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCC-c------CcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchh
Confidence 9999888887665443 89999999999999876 0 1268899999999999999999999999999999999
Q ss_pred cccccccChhhHHHHHHHHHHHHHHHHH
Q 013212 403 WYVGEGMEEGEFSEAREDLAALEKDYEE 430 (447)
Q Consensus 403 ~Y~~~Gmee~eF~ea~~~l~~li~~Y~~ 430 (447)
||+++||||+||.||+++|++++++|++
T Consensus 355 ~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 355 WYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred hhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999974
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=1.7e-82 Score=608.60 Aligned_cols=402 Identities=85% Similarity=1.371 Sum_probs=381.5
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCC----CCCCCCCccccccccccCCCccccceeeecCCCceeecccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGD----TTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 76 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~----~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~ 76 (447)
|||||.|++||+|.|||...|+.+|.||++.+.+. .......+..+.||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 99999999999999999999999999999985432 2211233467899999999999999999999999 999999
Q ss_pred ccccccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhh
Q 013212 77 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 156 (447)
Q Consensus 77 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~de 156 (447)
|.|+.+|||++++.++++++||+|+|+|+.|+|+.+..+++||+.++.|..||||.++|+.|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013212 157 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 236 (447)
Q Consensus 157 yp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 236 (447)
|+|+..+.++++|.+..+..+++|||++|+.+...+++|+++++||++.+.+|.+.+.+.+|.|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceecccc
Q 013212 237 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 316 (447)
Q Consensus 237 ~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 316 (447)
++||.|.+|+||.+|++||||+| + ++|+.+..+..++++++.+++...|++.|||++|||+.|+|.++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999999889999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHHHHHHhhc
Q 013212 317 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 396 (447)
Q Consensus 317 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 396 (447)
|++.|+++..++..+|.+.++.|++ ..+|+.++++..+..|+|+|+|+|++...++-.+|+.||.
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd---------------~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmya 377 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVD---------------TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 377 (407)
T ss_pred CCcCcccchHHHHhhhhccccccce---------------eeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhc
Confidence 9999999999999999999988876 2346677888899999999999999999999999999999
Q ss_pred cccceecccccccChhhHHHHHHHHHHHH
Q 013212 397 KRAFVHWYVGEGMEEGEFSEAREDLAALE 425 (447)
Q Consensus 397 rkAflh~Y~~~Gmee~eF~ea~~~l~~li 425 (447)
||||+|||.++||||+||.||++.|..|.
T Consensus 378 krafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 378 KRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred chheeeeccCCCccccchhhhhhhHHhhc
Confidence 99999999999999999999999998763
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=2.6e-71 Score=534.17 Aligned_cols=344 Identities=41% Similarity=0.824 Sum_probs=329.1
Q ss_pred CCccccccccccCCCccccceeeecCCCceeeccccccccccCCcceeecCCCCcCCCccccccccchhhHHHHHHHHHH
Q 013212 41 GDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 120 (447)
Q Consensus 41 ~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~ 120 (447)
+..+++++|.+...++|+||+|+||++|++++.++.+++...|+|++ +++| .|+|..|.++.|.
T Consensus 7 q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------- 70 (369)
T KOG1375|consen 7 QLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------- 70 (369)
T ss_pred eeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-------
Confidence 56689999999999999999999999999999999999999999998 4433 8899999987777
Q ss_pred HHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeee
Q 013212 121 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLL 200 (447)
Q Consensus 121 ~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~ 200 (447)
.||++||||++||++||||||.|+.++..++++||.+...+++|.|+.. ++++++|||+.|++..|.+++|.++++
T Consensus 71 ---~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ci 146 (369)
T KOG1375|consen 71 ---SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCI 146 (369)
T ss_pred ---ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccccc
Confidence 8999999999999999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred cchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccCCCCcccchhhhhhcCCCCcccccccccccccccccccccc
Q 013212 201 DNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHE 280 (447)
Q Consensus 201 dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~ 280 (447)
||++|+++|.+.++++.+. ++|.++||||++|.|+.++..|++|||++||+.++++|++.....++.
T Consensus 147 dNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~ 213 (369)
T KOG1375|consen 147 DNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR 213 (369)
T ss_pred ccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccc
Confidence 9999999999999988877 899999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhhcCCCCCccccCCCCCcccceeccccccCChhhHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCC
Q 013212 281 QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP 360 (447)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~ 360 (447)
.++++++++++|+.+|++..++ ||+++.++|| +.+++++.+..++.|++.+|++|+|+++|+++|..||..+
T Consensus 214 a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl- 285 (369)
T KOG1375|consen 214 ALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL- 285 (369)
T ss_pred cccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc-
Confidence 9999999999999999999887 9999999999 8899999999999999999999999999999999999876
Q ss_pred CCCcccccceEEEeecCcchHHHHHHHHHHHHHhhccccceecccccccChhhHHHHHHHHHHHHHHHHHHc
Q 013212 361 GGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 432 (447)
Q Consensus 361 ~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~rkAflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~ 432 (447)
+.+.+.++|+|+|.++|+++.++|..||+||||||||+++||||+||+||..++++|+.+|+++.
T Consensus 286 -------kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~ 350 (369)
T KOG1375|consen 286 -------KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 350 (369)
T ss_pred -------cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999999994
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=2.4e-64 Score=505.14 Aligned_cols=328 Identities=45% Similarity=0.819 Sum_probs=303.4
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeecccccccccc
Q 013212 3 ECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 82 (447)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~ 82 (447)
|||+||+||||||||.+||+.+ |+||+|+++++.+...+...+
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-------------------------------------v~idtd~~~l~~~~~~~~~~~ 43 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------VLVDTEPGVIDETLSGPYRLL 43 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-------------------------------------heecCCHHHHHHHhCcccccc
Confidence 8999999999999999999861 999999999999988877778
Q ss_pred CCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcce
Q 013212 83 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 162 (447)
Q Consensus 83 ~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~ 162 (447)
|++.+.+.+++|+||||+.||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|+.++|.|||+||++++
T Consensus 44 ~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~ 123 (328)
T cd00286 44 FCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLK 123 (328)
T ss_pred cCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccCCC
Q 013212 163 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 242 (447)
Q Consensus 163 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 242 (447)
++++|+|+...+ +++++||+++++++|.+++|+++++||++|.++|.+.+.+..+.|+++|++||++|+++|.++|+||
T Consensus 124 ~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g 202 (328)
T cd00286 124 ITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDG 202 (328)
T ss_pred eEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccCc
Confidence 999999997533 6999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred CcccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceeccccccCChh
Q 013212 243 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPK 322 (447)
Q Consensus 243 ~~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~ 322 (447)
.+|.|++++.++|+|+|++||++++++|+.......+...++.++++++++++++++.++++.++++++.+++||...+.
T Consensus 203 ~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~~~ 282 (328)
T cd00286 203 SLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVSPS 282 (328)
T ss_pred cccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCChH
Confidence 99999999999999999999999999999876656667788999999999999999888888899999999999999999
Q ss_pred hHHHHHHhhhccCccccccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecC
Q 013212 323 DVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNS 377 (447)
Q Consensus 323 ~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~ 377 (447)
++.+....++.+..+. +|.|+++++++|..+|.. +.+.++++++|+
T Consensus 283 ~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~-------~~~~~~~~l~Ns 328 (328)
T cd00286 283 EVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPAS-------EHKVSALLLSNS 328 (328)
T ss_pred HHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCC-------CcCeEEEEeccC
Confidence 9988888887765544 899999999999887641 126788999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=7.9e-50 Score=412.88 Aligned_cols=414 Identities=19% Similarity=0.240 Sum_probs=293.4
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccC----CCccccceeeecCCCceeeccccc
Q 013212 2 RECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETG----AGKHVPRAVFVDLEPTVIDEVRTG 77 (447)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pR~llvD~e~~~i~~~~~~ 77 (447)
|||||||+||++|+||+||||. ||..++|.++.. ....+++++||++. +.+|+||+|++|+++++....+.+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~--~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~~~ 76 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNL--QEANFGYDPDSP--ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPEEG 76 (493)
T ss_pred CceEEEeccCccccHhhhhhhh--hhhhcCCCCCCc--cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccccc
Confidence 7999999999999999999999 999998876653 35678999999864 569999999999999876543332
Q ss_pred cc----------------cccCCcceeecCC-----CCcCCCccccccc---cchhhHHHHHHHHHHHHhhcCCCcceeE
Q 013212 78 TY----------------RQLFHPEQLISGK-----EDAANNFARGHYT---IGKEIVDLCLDRIRKLADNCTGLQGFLV 133 (447)
Q Consensus 78 ~~----------------~~~~~~~~~~~~~-----~g~gnn~a~G~~~---~g~~~~e~~~d~ir~~~E~cD~lqgf~i 133 (447)
.+ +-+|||++++... .+.+++|++|+-. .+.+..|+++|+||+++|+||++||||+
T Consensus 77 ~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi 156 (493)
T cd06060 77 SLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQV 156 (493)
T ss_pred CcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEE
Confidence 21 2269999998553 3556677766422 2456779999999999999999999999
Q ss_pred EeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCC----CCccchhhHHHHHHHHhhccCCeeeeecch-hHHhh
Q 013212 134 FNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV----STSVVEPYNSVLSTHSLLEHTDVAVLLDNE-AIYDI 208 (447)
Q Consensus 134 ~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~-~l~~~ 208 (447)
++|++||| ||+|+.++|.|+||||++.++++++.|.... .+.++++||++|++.+|.+++|+++|+.-. .+|..
T Consensus 157 ~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~ 235 (493)
T cd06060 157 LCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRK 235 (493)
T ss_pred EEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccC
Confidence 99999999 8999999999999999999999999997532 257899999999999999999999999844 44432
Q ss_pred h-----hccCCCCCCCccchhHHHHHHhhhccccccCCCCcccchhhhhhcCCCCccccccccccc-ccccccccccccc
Q 013212 209 C-----RRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA-PVISAEKAFHEQL 282 (447)
Q Consensus 209 ~-----~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~-p~~~~~~~~~~~~ 282 (447)
. ...+.++..+..+..+++|.+|.++|.|+|..+.. .+|.+|+..|.+..| |+...+.+ |+-... .-
T Consensus 236 ~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~~-----~~ 308 (493)
T cd06060 236 PGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMVG-----GQ 308 (493)
T ss_pred CCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCCC-----CC
Confidence 2 12234455567788999999999999999999765 579999999997666 66655443 443211 12
Q ss_pred CHHHHHHhhcCCC--CCccccC-CCCCcccceeccccccCCh-------------------hhHHHHHHhhhccCc-ccc
Q 013212 283 SVAEITNSAFEPS--SMMAKCD-PRHGKYMACCLMYRGDVVP-------------------KDVNAAVATIKTKRT-IQF 339 (447)
Q Consensus 283 ~~~~l~~~~~~~~--~~~~~~~-~~~~~~ls~~~~~RG~~~~-------------------~~~~~~~~~~~~~~~-~~f 339 (447)
.+.++.+..-... .++ .++ +...++....+++||-... ..+.+.++...+... ..+
T Consensus 309 ~l~d~L~~~~~~~~~~~l-~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~ 387 (493)
T cd06060 309 DLIDFLDQSDGAVPWLQL-TPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSM 387 (493)
T ss_pred cHHHHHHhcCCCCCcccc-CCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcc
Confidence 4455544431111 122 222 2346789999999994310 011111111111100 000
Q ss_pred c--------cCCCCCCceeEecc-CCCc--CCCCC--cc--cc--cceEEEeecCcchHHHHHHHHHHHHHhhcccccee
Q 013212 340 V--------DWCPTGFKCGINYQ-PPTV--VPGGD--LA--KV--QRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVH 402 (447)
Q Consensus 340 ~--------~w~p~~~~~~~~~~-~~~~--~~~~~--~~--~~--~~s~~~l~N~t~i~~~l~~l~~~~~~m~~rkAflh 402 (447)
. --+|.+|+.-+... ...+ .+... .+ .+ -..++.|.|++++...|+.+..++.|+--+| +|
T Consensus 388 ~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~ 465 (493)
T cd06060 388 SALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--KA 465 (493)
T ss_pred hhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--hh
Confidence 0 00112222111100 0000 00000 00 01 1234568999999999999999999999988 88
Q ss_pred cccccccChhhHHHHHHHHHHHHHHHHH
Q 013212 403 WYVGEGMEEGEFSEAREDLAALEKDYEE 430 (447)
Q Consensus 403 ~Y~~~Gmee~eF~ea~~~l~~li~~Y~~ 430 (447)
.|.+.|+|+|||.|+.++|.++.+.|++
T Consensus 466 ~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 466 SFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred cccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999963
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=2.8e-50 Score=380.31 Aligned_cols=215 Identities=46% Similarity=0.846 Sum_probs=201.3
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeecccccccccc
Q 013212 3 ECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 82 (447)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~ 82 (447)
|||+||+||||||||.+||+++++||+++.. ........+.++||+|..+++|+||+|+||+|+++++.++.++.+++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l 78 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPD--SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSL 78 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTT--SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccc--cccccccccccceeeeccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999998754 22224667889999999999999999999999999999998887789
Q ss_pred CCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcce
Q 013212 83 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 162 (447)
Q Consensus 83 ~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~ 162 (447)
|+|++++.+++|+||||+.||+..|+++.++++|.||+++|+||.+|||+++||+|||||||+++.|++.||++||++++
T Consensus 79 ~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~ 158 (216)
T PF00091_consen 79 FDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPI 158 (216)
T ss_dssp SCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEE
T ss_pred ccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCcc
Q 013212 163 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 221 (447)
Q Consensus 163 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~ 221 (447)
++++|+|+. .++++++||++++|++|.+++|+++++||++|.++|.+.+++..|+|+
T Consensus 159 ~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 159 ISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred eeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 999999994 389999999999999999999999999999999999999998887774
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=9.3e-37 Score=282.89 Aligned_cols=185 Identities=40% Similarity=0.677 Sum_probs=171.2
Q ss_pred ccccccCCCccccceeeecCCCceeeccccccccccCCcceeecCCCCcCCCccccccc-----cchhhHHHHHHHHHHH
Q 013212 47 TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT-----IGKEIVDLCLDRIRKL 121 (447)
Q Consensus 47 ~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~-----~g~~~~e~~~d~ir~~ 121 (447)
.+|.++ ++.||+|++|+++++++.+..++.++.|+|++.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 355553 68899999999999999987777778899999989999999999999998 8999999999999999
Q ss_pred HhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeec
Q 013212 122 ADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLD 201 (447)
Q Consensus 122 ~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~d 201 (447)
+|+| |+|+++||+|||||||+++.+++.++ +||+.. ++++|+|. ..|..+++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999994 36889999999999999999999999999
Q ss_pred chhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccCCC
Q 013212 202 NEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 242 (447)
Q Consensus 202 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 242 (447)
|++|.++|.+.+.+ .++|.++|++||+.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999887765 77999999999999999999999986
No 21
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=100.00 E-value=7.4e-35 Score=286.91 Aligned_cols=239 Identities=23% Similarity=0.357 Sum_probs=181.1
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccc-cccccccC----CCccccceeeecCCCceeeccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAF-NTFFSETG----AGKHVPRAVFVDLEPTVIDEVR 75 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~-~~~f~e~~----~~~~~pR~llvD~e~~~i~~~~ 75 (447)
||||+|||+|+.+|++|+||||+ ||..+.+..+......+..+ ||+|+.+. ..+|+||+|++|++..+.....
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~--Qea~l~~~~d~~~~~~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~~ 78 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQ--QEAYLGLATDSEEPPGELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTLKY 78 (483)
T ss_pred CceEEEEEeeccccchhhhhcch--hhHhhccCCcccCChhhcCcchhhhhccccccCceeeccceeEEecCcccccccc
Confidence 99999999999999999999999 99888876654432333444 89999864 3499999999999997652211
Q ss_pred cccc-------------------------------------------------------------------cccCCccee
Q 013212 76 TGTY-------------------------------------------------------------------RQLFHPEQL 88 (447)
Q Consensus 76 ~~~~-------------------------------------------------------------------~~~~~~~~~ 88 (447)
.+.+ +..|||+++
T Consensus 79 ~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~tl 158 (483)
T KOG2530|consen 79 QGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRTL 158 (483)
T ss_pred chhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCcccc
Confidence 1110 016899988
Q ss_pred ecCCCCcCCCccccccccchhh------HHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcce
Q 013212 89 ISGKEDAANNFARGHYTIGKEI------VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 162 (447)
Q Consensus 89 ~~~~~g~gnn~a~G~~~~g~~~------~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~ 162 (447)
...+..--|.-+.+.|..|.++ .+++.|+||.++|+||.+|||+++.++.+||| |+++.++|.|+|||+++.+
T Consensus 159 ~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~v 237 (483)
T KOG2530|consen 159 NPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKAV 237 (483)
T ss_pred ccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCce
Confidence 7555432222234445556544 48899999999999999999999999999996 9999999999999999999
Q ss_pred eEEEEecCCC-CCCc---cch---hhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhcc
Q 013212 163 LGFTVYPSPQ-VSTS---VVE---PYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 235 (447)
Q Consensus 163 ~~~~v~P~~~-~~~~---~~~---~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 235 (447)
.++++.|.+. .++. +-. ..|.++++.+|.+.|++++|+.--. .++ ..-...+++|.+|.++|
T Consensus 238 ~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~~~ds~t 306 (483)
T KOG2530|consen 238 FTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLARAFDSIT 306 (483)
T ss_pred eccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHhhccccc
Confidence 9999988432 2222 222 5789999999999999999984222 111 23467799999999999
Q ss_pred ccccCCCCcccchhhhhh
Q 013212 236 ASLRFDGALNVDVTEFQT 253 (447)
Q Consensus 236 ~~~r~~~~~n~~l~~~~~ 253 (447)
.|.|.-++.+..+.++..
T Consensus 307 lptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 307 LPTRLISSSNLRQRDTLS 324 (483)
T ss_pred ccceecchhHHHHHHHHH
Confidence 999998876555554443
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.98 E-value=5.3e-32 Score=271.89 Aligned_cols=221 Identities=21% Similarity=0.296 Sum_probs=190.3
Q ss_pred CeeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeecccccccc
Q 013212 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYR 80 (447)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 80 (447)
|+ |..|.+|+||+.|-.++++. +. ..+.+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~---------------------~~~~~~~~~~iavntD~~~L~~l~~---- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DK---------------------RSGFGYCVGALAINTAKNDLKGLKH---- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CC---------------------CcCCccceeEEEEECCHHHHHhhhc----
Confidence 55 78899999999999999875 00 0123689999999999998887643
Q ss_pred ccCCcceeecCCC-----CcCCCccccccccchhhHHHHHHHHHHHHhhcCC--CcceeEEeeCCCCcccCchHHHHHHh
Q 013212 81 QLFHPEQLISGKE-----DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTG--LQGFLVFNAVGGGTGSGLGSLLLERL 153 (447)
Q Consensus 81 ~~~~~~~~~~~~~-----g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~--lqgf~i~~sl~GGtGSG~~s~l~e~l 153 (447)
.+.|+.++.+++ |+|+|| ..|+++.++..|.||+++|.||. +|+|++++|+|||||||+++.|++.+
T Consensus 50 -~~~~~ki~~g~~~t~G~GaG~~~-----~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~l 123 (349)
T cd02202 50 -IPAEDRILIGQSEVKGHGVGADR-----ELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKEL 123 (349)
T ss_pred -CCCCCEEEecCcccCCCCCCCCh-----HHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHH
Confidence 346778887764 566665 45789999999999999999997 99999999999999999999999999
Q ss_pred hhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhh
Q 013212 154 SVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISS 233 (447)
Q Consensus 154 ~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 233 (447)
+++|| +++++++++|+.. +..+++||+++++++|.+++|.++++||++|.+.+.. + .+.|+++|++||+.|..
T Consensus 124 ke~~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~-~---~~~f~~~N~~Ia~~i~~ 196 (349)
T cd02202 124 KERYE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES-V---EEAYDRINEEIARRIGL 196 (349)
T ss_pred HHhCC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc-h---HHHHHHHHHHHHHHHHH
Confidence 99999 8899999999874 5699999999999999999999999999999998742 2 37899999999999999
Q ss_pred ccccccC-----CCCcccchhhhhhcCCCCcccccccccc
Q 013212 234 LTASLRF-----DGALNVDVTEFQTNLVPYPRIHFMLSSY 268 (447)
Q Consensus 234 ~t~~~r~-----~~~~n~~l~~~~~~L~p~p~~~fl~~~~ 268 (447)
++.+.|| ||.+|.|++++.++|.+. .+...++
T Consensus 197 l~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~ 233 (349)
T cd02202 197 LLRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGY 233 (349)
T ss_pred HHHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEE
Confidence 9999999 999999999999999765 3444444
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.94 E-value=4.6e-27 Score=231.84 Aligned_cols=200 Identities=18% Similarity=0.268 Sum_probs=168.0
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeeccccccccccC
Q 013212 4 CISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLF 83 (447)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~ 83 (447)
|..|.+|+||+.+-.++++. ++ .-.+.++||++...++.+..
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~--------------------------~~~~~iainTd~~~L~~~~a------- 44 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK--------------------------EGRSAVAVNTDAQDLLGLEA------- 44 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC--------------------------CCccEEEEECcHHHHhcCCC-------
Confidence 77899999999999999764 00 01478999999887765542
Q ss_pred Ccceeec-----CCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013212 84 HPEQLIS-----GKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 158 (447)
Q Consensus 84 ~~~~~~~-----~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp 158 (447)
++-+.. ...|+|+||.. |+++.++.++.||+.+|.||. |++++++|||||||+++.+++.+++.|+
T Consensus 45 -~~ki~iG~~~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~ 115 (303)
T cd02191 45 -ENRVLIGQARTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT 115 (303)
T ss_pred -CcEEecCCccccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC
Confidence 222333 34589999875 568999999999999999994 8999999999999999999999999985
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccc
Q 013212 159 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 238 (447)
Q Consensus 159 ~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 238 (447)
.+++|.|.+...|..+++||+.+++++|.+++|.++++||++|.+++.+ +.+. ..|+.+|++|++.|.++|..+
T Consensus 116 ----~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i 189 (303)
T cd02191 116 ----LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAI 189 (303)
T ss_pred ----CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhh
Confidence 4555555444468899999999999999999999999999999999976 7764 499999999999999999999
Q ss_pred cCCCCcccchhhhhhcCC
Q 013212 239 RFDGALNVDVTEFQTNLV 256 (447)
Q Consensus 239 r~~~~~n~~l~~~~~~L~ 256 (447)
|+||.+|.|++++.+.|-
T Consensus 190 ~~~g~invD~~dv~~~l~ 207 (303)
T cd02191 190 EIEGEINVDFADVKNVMD 207 (303)
T ss_pred ccCCcccCCHHHHHHHhc
Confidence 999999999999988773
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.92 E-value=3.5e-25 Score=221.81 Aligned_cols=206 Identities=15% Similarity=0.282 Sum_probs=163.7
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeecccccccccc
Q 013212 3 ECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 82 (447)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~ 82 (447)
-|..|.+|+||+.+-.++++. + ..-...+.+|++...++.+... .+-+
T Consensus 19 ~i~viGvGg~G~n~v~~l~~~-----~--------------------------~~~~~~iainTD~~~L~~~~a~-~ki~ 66 (349)
T TIGR00065 19 KIKVIGVGGGGNNTVNRMLEE-----G--------------------------VEGVEFIAINTDAQHLKTTKAD-KKIL 66 (349)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----C--------------------------CCceEEEEEECCHHHHhcCCCC-eEEE
Confidence 377899999999999988764 0 0115678899987765544321 1111
Q ss_pred CCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcce
Q 013212 83 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 162 (447)
Q Consensus 83 ~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~ 162 (447)
+.++ .+...|+|++|+ .|+++.++.+|.||+.+|.||.+ ++++|+|||||||+++.+++.+++ |+ +..
T Consensus 67 iG~~--~t~G~GaG~~~~-----~G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~-~l~ 134 (349)
T TIGR00065 67 IGKK--LTRGLGAGGNPE-----IGRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG-ALT 134 (349)
T ss_pred cCCC--CCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC-CCE
Confidence 1111 122347888877 47899999999999999999985 999999999999998866666554 54 445
Q ss_pred eEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccCCC
Q 013212 163 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 242 (447)
Q Consensus 163 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 242 (447)
+++.++|+. .|..+++||+.+++++|.+++|.++++||++|.++|.+ +.+.. .|+.+|.+|++.+.++|.++|+||
T Consensus 135 vaivt~Pf~--~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~ir~~g 210 (349)
T TIGR00065 135 VAVVTKPFK--FEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELITKPG 210 (349)
T ss_pred EEEEeCCcc--ccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhccCC
Confidence 555556654 68899999999999999999999999999999999977 77744 999999999999999999999999
Q ss_pred CcccchhhhhhcCC
Q 013212 243 ALNVDVTEFQTNLV 256 (447)
Q Consensus 243 ~~n~~l~~~~~~L~ 256 (447)
.+|.|+.++.+-|-
T Consensus 211 ~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 211 LINIDFADVRAVMS 224 (349)
T ss_pred cCcCCHHHHHHHHh
Confidence 99999999988774
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=3.4e-25 Score=219.44 Aligned_cols=208 Identities=13% Similarity=0.264 Sum_probs=167.8
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeeccccccccccC
Q 013212 4 CISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLF 83 (447)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~ 83 (447)
|..|.+|+||+.+-.++++. ++ .+ ...+.+|++...++.+... .+-++
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-----------------------~~---~~~~a~ntD~~~L~~~~~~-~k~~i 50 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-----------------------EG---VEFIAANTDAQALAKSKAP-NKIQL 50 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-----------------------CC---ceEEEEECCHHHHhcCCCC-cEEEc
Confidence 67899999999999998764 10 01 4678999988876655421 12122
Q ss_pred CcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCccee
Q 013212 84 HPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKL 163 (447)
Q Consensus 84 ~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~ 163 (447)
.++ .+...|+|+||+. |++..++..|.||+.+|.||.+ ++++|+|||||||+++.+++..++ |+ +..+
T Consensus 51 g~~--~t~g~Gag~~~~~-----g~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~e-~g-~~~~ 118 (304)
T cd02201 51 GKE--LTRGLGAGGDPEV-----GRKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAKE-MG-ALTV 118 (304)
T ss_pred CCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHHH-cC-CCEE
Confidence 222 1234588899875 4678899999999999999975 999999999999999997766654 65 3555
Q ss_pred EEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccCCCC
Q 013212 164 GFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGA 243 (447)
Q Consensus 164 ~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~ 243 (447)
++.++|+. .|..+++||+.+++++|.+++|.++++||++|.++|.+.+.+.. .|+.+|.+|++.+.++|.++|+||.
T Consensus 119 ~vvt~Pf~--~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~g~ 195 (304)
T cd02201 119 AVVTKPFS--FEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKPGL 195 (304)
T ss_pred EEEeCCcc--ccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccCcc
Confidence 56666664 57789999999999999999999999999999999977777766 8999999999999999999999999
Q ss_pred cccchhhhhhcCCCC
Q 013212 244 LNVDVTEFQTNLVPY 258 (447)
Q Consensus 244 ~n~~l~~~~~~L~p~ 258 (447)
+|.|+.++.+.|-.-
T Consensus 196 invD~~dv~~vl~~~ 210 (304)
T cd02201 196 INLDFADVKTVMKNK 210 (304)
T ss_pred ccCCHHHHHHHhccC
Confidence 999999999988543
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.90 E-value=9.4e-24 Score=212.36 Aligned_cols=200 Identities=18% Similarity=0.345 Sum_probs=166.5
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeeccccccccccC
Q 013212 4 CISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLF 83 (447)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~ 83 (447)
|..|.+|+||+.+-.++++. ++ .+ ...|.|+++...++.+..
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~-----------------------~~---v~~iaiNTD~q~L~~~~a------- 72 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI-----------------------EG---AETIAINTDAQHLAMIKA------- 72 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-----------------------CC---ceEEEEECCHHHHhcCCC-------
Confidence 77899999999999998764 10 01 467889998876654422
Q ss_pred Ccceeec-----CCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcC
Q 013212 84 HPEQLIS-----GKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 158 (447)
Q Consensus 84 ~~~~~~~-----~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp 158 (447)
++.+.. ...|+|++|. .|++..++..|.||+.+|.||. |++++++|||||||+++.|++.+++ ++
T Consensus 73 -~~ki~iG~~~t~G~GaG~dp~-----~G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g 142 (378)
T PRK13018 73 -DKKILIGKSLTRGLGAGGDPE-----VGRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG 142 (378)
T ss_pred -CcEEecCCccCCCCCCCCChH-----HHHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC
Confidence 222332 2347888866 4567888999999999999997 8999999999999999999999987 43
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccc
Q 013212 159 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 238 (447)
Q Consensus 159 ~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 238 (447)
...+++++.|+. .|...+..|+.+++++|.+++|.++++||++|.++| +.+.+.. .|+.+|++|++.|.++|.++
T Consensus 143 -~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i 217 (378)
T PRK13018 143 -ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETI 217 (378)
T ss_pred -CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhc
Confidence 556788889986 477889999999999999999999999999999999 6666654 89999999999999999999
Q ss_pred cCCCCcccchhhhhhcCC
Q 013212 239 RFDGALNVDVTEFQTNLV 256 (447)
Q Consensus 239 r~~~~~n~~l~~~~~~L~ 256 (447)
|+||.+|.|+.++.+-|-
T Consensus 218 ~~~G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 218 TKPSLINLDFADVKSVMK 235 (378)
T ss_pred ccCCceecCHHHHHHHhc
Confidence 999999999999988774
No 27
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.90 E-value=8.4e-24 Score=182.88 Aligned_cols=126 Identities=59% Similarity=1.020 Sum_probs=113.9
Q ss_pred ccccccccccccccccccccccccCHHHHHHhhcCCCCCccccCCCCCcccceeccccccCChhhHHHHHHhhhccCccc
Q 013212 259 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ 338 (447)
Q Consensus 259 p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 338 (447)
||+||++++++|+.......++..++.+|++++|+++|+|++++|++|+||++++++||++.+.++.+.+..++.+.++.
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceeEeccCCCcCCCCCcccccceEEEeecCcchHHHHHHHHH
Q 013212 339 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDH 389 (447)
Q Consensus 339 f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~ 389 (447)
|++|+|+++|+++|+++|...+.+ +.++++|+|+|+|.+.|+++..
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999887643 5679999999999999999863
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.87 E-value=3.5e-22 Score=182.24 Aligned_cols=149 Identities=26% Similarity=0.408 Sum_probs=111.2
Q ss_pred cccCCcceeecCCCCc--CCCccccccccchhhH------HHHHH-HHHHHHhhcCCCcceeEEeeCCCCcccCchHHHH
Q 013212 80 RQLFHPEQLISGKEDA--ANNFARGHYTIGKEIV------DLCLD-RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL 150 (447)
Q Consensus 80 ~~~~~~~~~~~~~~g~--gnn~a~G~~~~g~~~~------e~~~d-~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~ 150 (447)
+-+|||++++..++-. +++-.+.-|..|.+.+ +++.| .||.++|+||++||||++.++.+||| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 3468888887654421 1111233344555443 45556 49999999999999999999999996 9999999
Q ss_pred HHhhhhcCCcce-eEEEEecCCCCCC-----ccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchh
Q 013212 151 ERLSVDYGKKSK-LGFTVYPSPQVST-----SVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLN 224 (447)
Q Consensus 151 e~l~deyp~~~~-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N 224 (447)
|+|||||||+++ .++++.+...... ...+.+|+++++.+|.+.|++++|+.... +..+..+..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 5555544332111 22456899999999999999999997210 234556999
Q ss_pred HHHHHHhhhccccccC
Q 013212 225 RLVSQVISSLTASLRF 240 (447)
Q Consensus 225 ~~ia~~i~~~t~~~r~ 240 (447)
+++|.+|.++|.|+|.
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999984
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.86 E-value=1.8e-21 Score=195.96 Aligned_cols=207 Identities=15% Similarity=0.290 Sum_probs=163.3
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccCCCccccceeeecCCCceeecccccccccc
Q 013212 3 ECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 82 (447)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~ 82 (447)
.|..|.+|+||+.+-.+.++. ++ .+ ...+.++++...++.+... .+-+
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~-----------------------~~---v~fia~NTD~q~L~~~~a~-~ki~ 62 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI-----------------------QG---VEFIAANTDAQALLKSKAP-VKIQ 62 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC-----------------------CC---ceEEEEeCcHHHHhcCCCC-eEEE
Confidence 377899999999999998764 10 01 2468888887765544221 1111
Q ss_pred CCcceeecCCCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcce
Q 013212 83 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 162 (447)
Q Consensus 83 ~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~ 162 (447)
+.++ .+...|+|++|. .|+++.++..+.||+.+|.||.+ +|++++|||||||.++. +..+..+|+ +
T Consensus 63 lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iake~g---~ 128 (384)
T PRK09330 63 LGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAKELG---I 128 (384)
T ss_pred cCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHHHcC---C
Confidence 1111 122347888876 67899999999999999999987 99999999999999995 555556665 5
Q ss_pred eEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccCCC
Q 013212 163 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 242 (447)
Q Consensus 163 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 242 (447)
++++|.|.+...|..+++||+.++|++|.+++|.+|+++|++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+++||
T Consensus 129 ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i~~pG 207 (384)
T PRK09330 129 LTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLITKPG 207 (384)
T ss_pred cEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5666655544568999999999999999999999999999999999977676655 899999999999999999999999
Q ss_pred CcccchhhhhhcCC
Q 013212 243 ALNVDVTEFQTNLV 256 (447)
Q Consensus 243 ~~n~~l~~~~~~L~ 256 (447)
.+|.|+.++.+-|-
T Consensus 208 ~iNvDfaDvk~vm~ 221 (384)
T PRK09330 208 LINLDFADVKTVMS 221 (384)
T ss_pred cccCCHHHHHHHHh
Confidence 99999999887764
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.59 E-value=9.1e-16 Score=130.19 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=58.7
Q ss_pred eeEEEEecCcchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccccccccccC----CCccccceeeecCCCceeecc
Q 013212 2 RECISVHIGQAGIQVGNACWELYCLEHGIQMPGDTTVGGGDDAFNTFFSETG----AGKHVPRAVFVDLEPTVIDEV 74 (447)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pR~llvD~e~~~i~~~ 74 (447)
|||||||+|+.+|+||+||||+ ||..+.|.++.. ..+.+++|+||++. ..+|+||+|++|++.+....-
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~--~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGsL~ 73 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNI--QESYLPYDPDEK--PSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGSLR 73 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhh--hhcccccCcccc--CcccCCceEEecccCcCCCeeECCcEEEEecCCCcCccc
Confidence 7999999999999999999999 999998766543 24678999999964 359999999999999965443
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.40 E-value=2.2e-12 Score=127.75 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=128.4
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhH
Q 013212 103 HYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYN 182 (447)
Q Consensus 103 ~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN 182 (447)
....|++..++..+.|+..++..| =++++.++|||||+|.++.+++.+++ .....++++++|+. .|...+.-|
T Consensus 74 ~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r~~~ 146 (338)
T COG0206 74 NPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPRMEN 146 (338)
T ss_pred CcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchHHHH
Confidence 377899999999999999988777 56889999999999999999999988 48888999999987 466778889
Q ss_pred HHHHHHHhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccccCCCCcccchhhhhhcCCCCc
Q 013212 183 SVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYP 259 (447)
Q Consensus 183 ~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p 259 (447)
+...+..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+.+++..+.-||..|.|+.++.+-+-...
T Consensus 147 A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~G 221 (338)
T COG0206 147 AEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGG 221 (338)
T ss_pred HHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcCC
Confidence 9999999999999999999999988764 2222 3368889999999999999999999999999999988876643
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.38 E-value=1.7e-07 Score=79.47 Aligned_cols=114 Identities=25% Similarity=0.392 Sum_probs=85.8
Q ss_pred cccchhhhhhcCCCCccccccccccccccccccccccccCHHHHHH--hhcCCCCCccccCCCCCcccceeccccccCCh
Q 013212 244 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITN--SAFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 321 (447)
Q Consensus 244 ~n~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 321 (447)
+|.|+.++.++|+|+| |+.++++|.... .+..+..++.. .++++++++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4689999999999999 899999999762 34456666666 7888888877665543 666655 6788
Q ss_pred hhHHHHHHhhhccCc-cccccCCC-CCCceeEeccCCCcCCCCCcccccceEEEeec-CcchHHHHHHHH
Q 013212 322 KDVNAAVATIKTKRT-IQFVDWCP-TGFKCGINYQPPTVVPGGDLAKVQRAVCMISN-STSVAEVFSRID 388 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~l~ 388 (447)
.++.+.+..++.+.. ..|+.|.| ..++. ..+.+.++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~------------------~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEEL------------------GGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcC------------------CCCcEEEEEEecccCccccccC
Confidence 899999888887655 77889988 33311 134578999 999999988763
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.53 E-value=0.0016 Score=65.98 Aligned_cols=102 Identities=19% Similarity=0.086 Sum_probs=61.6
Q ss_pred cCCCCcCCCccccccccchhhHHHHHHHHHHHHh----h--cCCC--c--ceeEEeeCCCCcccCchHHHHHHhhhhc--
Q 013212 90 SGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD----N--CTGL--Q--GFLVFNAVGGGTGSGLGSLLLERLSVDY-- 157 (447)
Q Consensus 90 ~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E----~--cD~l--q--gf~i~~sl~GGtGSG~~s~l~e~l~dey-- 157 (447)
....|+|..-+.|+... ....+++.+.|++.+. + -... + -+.|++|++||||||+---++-.||+.+
T Consensus 100 ~~~~GAgq~R~~GRla~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~ 178 (345)
T PF13809_consen 100 PLSAGAGQIRALGRLAF-FSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQ 178 (345)
T ss_pred chhcCCCCcccchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhc
Confidence 34557777766664332 1222344444444444 1 0111 1 2688999999999999888888888866
Q ss_pred ---CCcceeEEEEecCCCCCC---ccchhhHHHHHHHHhhc
Q 013212 158 ---GKKSKLGFTVYPSPQVST---SVVEPYNSVLSTHSLLE 192 (447)
Q Consensus 158 ---p~~~~~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~e 192 (447)
....+..+.++|...... .....-|+.=+|.+|.-
T Consensus 179 ~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~ 219 (345)
T PF13809_consen 179 PGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDY 219 (345)
T ss_pred ccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHH
Confidence 455688899999843211 13344566666666643
No 34
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=70.61 E-value=4.3 Score=34.84 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCc-hHHHHHHhhhh
Q 013212 112 DLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGL-GSLLLERLSVD 156 (447)
Q Consensus 112 e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~-~s~l~e~l~de 156 (447)
+...++|+..+++++. +|++++.++ ||| -+ ....+|.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gss--p~n~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSA--EMNAEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CCh--HHHHHHHHHhcCCC
Confidence 3466889999999999 999999999 776 34 33334555444
No 35
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=69.95 E-value=5.4 Score=33.40 Aligned_cols=32 Identities=16% Similarity=0.429 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhhcCCCcceeEEeeCCCCc
Q 013212 110 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGT 141 (447)
Q Consensus 110 ~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGt 141 (447)
-.+++.+++++.+++.+.-+|++++.|+.|||
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGS 70 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCc
Confidence 44667788888888888899999999999886
No 36
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=69.80 E-value=18 Score=33.08 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhhcCCCccee-EEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHH
Q 013212 110 IVDLCLDRIRKLADNCTGLQGFL-VFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 188 (447)
Q Consensus 110 ~~e~~~d~ir~~~E~cD~lqgf~-i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~ 188 (447)
+...+.+.|+..+|+ |+- ++.+.+-|+- -.++.++-.|+.+||...+ .+++|+...+.. -+-..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~--W~~~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNN--WNEANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTT--S-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhc--CCHHHHHHHH
Confidence 335555667777774 432 3333333332 3467777788999997444 678898653321 1113344566
Q ss_pred HhhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccc
Q 013212 189 SLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 237 (447)
Q Consensus 189 ~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 237 (447)
.|.+.||-++.+..+..... .-|..-|+.+..+=..+++-
T Consensus 97 ~il~~aD~v~~vs~~~Y~~~---------~~~~~rn~fMvdhsd~~iav 136 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYSP---------GQLQKRNRFMVDHSDGLIAV 136 (177)
T ss_dssp HHHHH-SEEEESSSSB---H---------HHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEccCCCCCCH---------HHHHHHhHHHHhCCCeEEEE
Confidence 77778999988866532211 12445666666655555443
No 37
>PLN02847 triacylglycerol lipase
Probab=67.60 E-value=19 Score=39.02 Aligned_cols=116 Identities=21% Similarity=0.248 Sum_probs=65.5
Q ss_pred ccccccccCCCccccc-eeeecCCCceeecccccccc--c----------cCCcceeecCCCCcCC----Cccccccccc
Q 013212 45 FNTFFSETGAGKHVPR-AVFVDLEPTVIDEVRTGTYR--Q----------LFHPEQLISGKEDAAN----NFARGHYTIG 107 (447)
Q Consensus 45 ~~~~f~e~~~~~~~pR-~llvD~e~~~i~~~~~~~~~--~----------~~~~~~~~~~~~g~gn----n~a~G~~~~g 107 (447)
-++++.....+.|.|. .|++|-+.+.|=-.-+|... . .|++..+ ...|..+ .-..|.+...
T Consensus 153 eDVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~l--~~gG~~n~~~G~AH~Gml~AA 230 (633)
T PLN02847 153 EDVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVL--HDGGVSNLVLGYAHCGMVAAA 230 (633)
T ss_pred HHEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCcccc--cccCcccCcCCccCccHHHHH
Confidence 4556666666778877 58899888765433333211 0 1222111 1111111 1133333333
Q ss_pred hhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhh--hcCCcceeEEE
Q 013212 108 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV--DYGKKSKLGFT 166 (447)
Q Consensus 108 ~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d--eyp~~~~~~~~ 166 (447)
+.+.+.+...|++.++++...+=+++=||||||+. +.+.-.|++ .|++...++|+
T Consensus 231 rwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVA----ALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 231 RWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTA----ALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHH----HHHHHHHhcCCCCCCceEEEec
Confidence 45667777788888999988877788899987763 344444454 45665555555
No 38
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=62.03 E-value=11 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhcCCCcceeEEeeCCCCc
Q 013212 111 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGT 141 (447)
Q Consensus 111 ~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGt 141 (447)
.+++.+++++.+++.+.-+|++++.|+-|||
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 4567788888888888788999999999887
No 39
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=61.37 E-value=8 Score=33.27 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=23.1
Q ss_pred CCcccCchHHHHHHhhhhcCC-cceeEEEE
Q 013212 139 GGTGSGLGSLLLERLSVDYGK-KSKLGFTV 167 (447)
Q Consensus 139 GGtGSG~~s~l~e~l~deyp~-~~~~~~~v 167 (447)
+|-|.|+|..+++.||.++|+ ..+++...
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 356779999999999999998 66665543
No 40
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=60.84 E-value=13 Score=31.39 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhcCCCcceeEEeeCCCCcc
Q 013212 111 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 142 (447)
Q Consensus 111 ~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtG 142 (447)
.+++.+++++.+++.+.=+|++++.|+-|||=
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 46677888888888777789999999999983
No 41
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=58.04 E-value=32 Score=34.73 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=55.7
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCC-CccchhhHHH
Q 013212 106 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSV 184 (447)
Q Consensus 106 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~-~~~~~~yN~~ 184 (447)
...+.+.++.+.|+..+ +..+||+|+|+.+ | --.++.+++.+-...++-.+++=+-.|....+ |.....++++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45667777778887765 4588999999876 5 34677778776555455556666678876533 3333333433
Q ss_pred HHHHHhhccCCeeeeecchhHHh
Q 013212 185 LSTHSLLEHTDVAVLLDNEAIYD 207 (447)
Q Consensus 185 lsl~~l~e~sd~~i~~dN~~l~~ 207 (447)
.+..-....-..++| |+.++.
T Consensus 137 -~~A~~~~~~GV~V~f-~~~i~~ 157 (335)
T PRK09461 137 -YVAANYPINEVTLFF-NNKLFR 157 (335)
T ss_pred -HHHcCCCCCeEEEEE-CCEeec
Confidence 333222233344444 555543
No 42
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=47.93 E-value=61 Score=32.51 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=56.6
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHH
Q 013212 106 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 185 (447)
Q Consensus 106 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~l 185 (447)
...+.+..+.+.|++.+++ .+||+|+|+.+ | --.++..+..+-+. ++-.+++=+-.|....+....+....++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3456677777888777663 78999999876 5 24567777765555 5555666677887653333334444444
Q ss_pred HHHHhhc--cCCeeeeecchhHHh
Q 013212 186 STHSLLE--HTDVAVLLDNEAIYD 207 (447)
Q Consensus 186 sl~~l~e--~sd~~i~~dN~~l~~ 207 (447)
.+....+ ..-..|+|++. ++.
T Consensus 133 ~~A~~~~~~~~gV~V~f~~~-i~~ 155 (323)
T cd00411 133 YVAANYDSRGRGVLVVFNDR-IFR 155 (323)
T ss_pred HHHcCcccCCCeEEEEECCE-Eec
Confidence 4433222 34556666544 443
No 43
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=47.31 E-value=19 Score=30.83 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcCC-CcceeEEeeCCCCcccCchH-HHHHHhhh
Q 013212 112 DLCLDRIRKLADNCTG-LQGFLVFNAVGGGTGSGLGS-LLLERLSV 155 (447)
Q Consensus 112 e~~~d~ir~~~E~cD~-lqgf~i~~sl~GGtGSG~~s-~l~e~l~d 155 (447)
+...++|++.+|+++. =+|++++.++ ||+ =+.. ..++.+..
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~~ 84 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLED 84 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhcc
Confidence 3466788888999866 7899999999 664 2322 45555543
No 44
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=45.91 E-value=71 Score=31.86 Aligned_cols=93 Identities=19% Similarity=0.162 Sum_probs=51.3
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCC-CccchhhHHH
Q 013212 106 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSV 184 (447)
Q Consensus 106 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~-~~~~~~yN~~ 184 (447)
...+.+.++.+.|++.+++ .+||+|+|+.. | --.++.+++.+-+..++-.+++=+..|....+ +.....++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--T-me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--T-MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--T-HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--H-HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3556777777888887754 88999999865 4 23566666766565555556666778876433 4444444444
Q ss_pred HHHHHhhccCCeeeeecchhHH
Q 013212 185 LSTHSLLEHTDVAVLLDNEAIY 206 (447)
Q Consensus 185 lsl~~l~e~sd~~i~~dN~~l~ 206 (447)
....+-. ..-.+|+|++. ++
T Consensus 128 ~~A~~~~-~~GV~v~f~~~-i~ 147 (313)
T PF00710_consen 128 RVAASPA-GPGVLVVFNGR-IY 147 (313)
T ss_dssp HHHHSGG-TSSEEEEETTE-EE
T ss_pred HHHhccc-CCceEEEeCCC-cc
Confidence 4433332 44455555544 44
No 45
>PRK13660 hypothetical protein; Provisional
Probab=41.77 E-value=1.1e+02 Score=28.03 Aligned_cols=112 Identities=10% Similarity=0.082 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHH
Q 013212 110 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 189 (447)
Q Consensus 110 ~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~ 189 (447)
+...+...|+..+|+ .+.=|. .+..=|+- =.++.++-.|+.+||...+ .+++|+...++. -.-..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~wfi--~ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~--W~e~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWVI--ISGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGEN--WNEANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEEE--ECCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhc--CCHHHHHHHHH
Confidence 334555666667673 233222 22111221 1366777889999986544 456787643321 11122234456
Q ss_pred hhccCCeeeeecchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccccc
Q 013212 190 LLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 239 (447)
Q Consensus 190 l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 239 (447)
|.+.||-++.+...-- -.+.-|..-|+.+..+=+.+.+-+.
T Consensus 98 i~~~aD~v~~vs~~~y---------~~p~q~~~rn~fmv~~sd~~i~~YD 138 (182)
T PRK13660 98 ILKQADFVKSISKRPY---------ESPAQFRQYNQFMLEHTDGALLVYD 138 (182)
T ss_pred HHHhCCEEEEecCCCC---------CChHHHHHHHHHHHHccCeEEEEEc
Confidence 6678999998843210 0011256777777776666655443
No 46
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=41.31 E-value=18 Score=29.40 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=40.7
Q ss_pred EeecCcchHHHHHHH-------HHHHHHhhccccceecccccccC--hhhHHHHHHHHHHHHHHHHHH
Q 013212 373 MISNSTSVAEVFSRI-------DHKFDLMYAKRAFVHWYVGEGME--EGEFSEAREDLAALEKDYEEV 431 (447)
Q Consensus 373 ~l~N~t~i~~~l~~l-------~~~~~~m~~rkAflh~Y~~~Gme--e~eF~ea~~~l~~li~~Y~~~ 431 (447)
.++|.++|..+|..| +++-.++--+|+|. ||+. -....||+..|..|-.+++.=
T Consensus 27 sIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 27 SIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377999998888765 56666667777655 6774 468999999999999999753
No 47
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=38.45 E-value=52 Score=28.55 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=38.7
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEec
Q 013212 102 GHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 169 (447)
Q Consensus 102 G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P 169 (447)
|++.....+...+...+++...++..-+-+++=||+||+. +..+...++...+...+..++.-|
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhccCCCceEEEEeCC
Confidence 4555556666777777777776667777778888987654 444555555543334444444433
No 48
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=37.76 E-value=97 Score=32.17 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=56.1
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCC-CCccchhhHHH
Q 013212 106 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 184 (447)
Q Consensus 106 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~-~~~~~~~yN~~ 184 (447)
...+.+..+.+.|+..++ +..+||+|+|+.+ | =-.++..+..+-+..|+-.+++=+-.|.... ++.....++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 345667777788877765 3468999999876 5 3467777776555445555566667776543 34444444444
Q ss_pred HHHHHhhccCCeeeeecch
Q 013212 185 LSTHSLLEHTDVAVLLDNE 203 (447)
Q Consensus 185 lsl~~l~e~sd~~i~~dN~ 203 (447)
..-.. ..+-..|+|++.
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 43322 345566777664
No 49
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=37.59 E-value=85 Score=31.70 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=56.2
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHH
Q 013212 106 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 185 (447)
Q Consensus 106 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~l 185 (447)
...+.+..+.+.|+...++ .+||+|+|+.+ | =-.++..++.+-+. +|-.+++=+-.|....+.........++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--T-me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--T-MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--h-HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3566777778888777663 78999999876 5 24677777765555 5555666667787543333333333333
Q ss_pred HHHHhhcc-----CCeeeeecchhHHh
Q 013212 186 STHSLLEH-----TDVAVLLDNEAIYD 207 (447)
Q Consensus 186 sl~~l~e~-----sd~~i~~dN~~l~~ 207 (447)
......+. -..++++=|+.++.
T Consensus 132 ~~A~~~~~~~~i~~~gV~v~f~~~i~~ 158 (336)
T TIGR00519 132 RAATEYIAEVTVCMHGVTLDFNCRLHR 158 (336)
T ss_pred HHHcCccccccccCceeEEEccCeEee
Confidence 33332221 22455555666654
No 50
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=35.96 E-value=49 Score=32.33 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCccccccccchhhHHHHH-HHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEE
Q 013212 96 ANNFARGHYTIGKEIVDLCL-DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 167 (447)
Q Consensus 96 gnn~a~G~~~~g~~~~e~~~-d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v 167 (447)
.-.++.|+|..+.+-.++.. .++...+|+++-=.| .=+-++|.||| |++ ..+...| +..+.++.+
T Consensus 28 ~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~~----~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 28 TMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GLA----IYAAERY-GCHVTGITL 93 (273)
T ss_dssp T---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HHH----HHHHHHH---EEEEEES
T ss_pred CCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HHH----HHHHHHc-CcEEEEEEC
Confidence 34567788887777666655 468888888874444 56678888887 444 3444556 444444443
No 51
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=35.16 E-value=1.2e+02 Score=30.47 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=53.0
Q ss_pred chhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCC-CccchhhHHHH
Q 013212 107 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSVL 185 (447)
Q Consensus 107 g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~-~~~~~~yN~~l 185 (447)
..+.+..+.+.|+..+.. +..+||+|+|+.+ | --.++..++.+-+..+|-.+++=+-.|....+ +.....++++.
T Consensus 58 t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTD--T-meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~ 133 (323)
T smart00870 58 TPADWLKLAKRINEALAD-DGYDGVVVTHGTD--T-LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVR 133 (323)
T ss_pred CHHHHHHHHHHHHHHhcc-CCCCEEEEecCCc--c-HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHH
Confidence 445556666666665432 5689999999876 5 24566777765555455556666677876433 33333334433
Q ss_pred HHHHhhc--cCCeeeeecchhHHh
Q 013212 186 STHSLLE--HTDVAVLLDNEAIYD 207 (447)
Q Consensus 186 sl~~l~e--~sd~~i~~dN~~l~~ 207 (447)
...-.+ ..-..++| |+.++.
T Consensus 134 -~A~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 134 -VAASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred -HHcCcccCCCEEEEEE-CCEeee
Confidence 322222 23344555 555554
No 52
>PF03283 PAE: Pectinacetylesterase
Probab=32.87 E-value=77 Score=32.36 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=34.1
Q ss_pred ccccchhhHHHHHHHHHHH-HhhcCCCcceeEEeeCCCCcccCchHHH-HHHhhhhcCC
Q 013212 103 HYTIGKEIVDLCLDRIRKL-ADNCTGLQGFLVFNAVGGGTGSGLGSLL-LERLSVDYGK 159 (447)
Q Consensus 103 ~~~~g~~~~e~~~d~ir~~-~E~cD~lqgf~i~~sl~GGtGSG~~s~l-~e~l~deyp~ 159 (447)
.|..|....+.+++.|... +.+ .+-+++..+.+||.| +.+ .+.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~---a~~vlltG~SAGG~g----~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPN---AKQVLLTGCSAGGLG----AILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCcc---cceEEEeccChHHHH----HHHHHHHHHHHhcc
Confidence 4556888888888777666 443 344577777766654 444 7889999985
No 53
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=31.99 E-value=14 Score=31.37 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=37.8
Q ss_pred cccccccch-hhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCC--cceeEEEE
Q 013212 100 ARGHYTIGK-EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK--KSKLGFTV 167 (447)
Q Consensus 100 a~G~~~~g~-~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~--~~~~~~~v 167 (447)
..|++..-. ...+.+.+.|+..+++.....=.+.=||+||+ ++..+.-.+....+. ..+.+++.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~~~~~~~~~~f 101 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPSSSSNVKCYTF 101 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTTSTTTEEEEEE
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccccccceeeeec
Confidence 344444333 56677888888888776654445566788654 556666666665543 33444443
No 54
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=31.50 E-value=1.8e+02 Score=22.34 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhc--CCCcceeEEeeCC----CCcccCchHHHHHHhhhhcCCcceeEEEEec
Q 013212 112 DLCLDRIRKLADNC--TGLQGFLVFNAVG----GGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 169 (447)
Q Consensus 112 e~~~d~ir~~~E~c--D~lqgf~i~~sl~----GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P 169 (447)
+++...++..+++| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-.+
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~~ 69 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeecC
Confidence 34555666666665 3567788999988 554 7777778887656555565554433
No 55
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=31.47 E-value=80 Score=32.80 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=44.0
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCC
Q 013212 106 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 172 (447)
Q Consensus 106 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~ 172 (447)
.-++-.+.+.+.|++.+++|| +++.| ||++.|-.-.+-+.|+++.+...+.-+.+-|-..
T Consensus 224 iv~Dd~~~l~~~i~~a~~~~D-----viIts--GG~SvG~~D~v~~~l~~~lG~v~~~gia~kPGkP 283 (404)
T COG0303 224 IVPDDPEALREAIEKALSEAD-----VIITS--GGVSVGDADYVKAALERELGEVLFHGVAMKPGKP 283 (404)
T ss_pred ccCCCHHHHHHHHHHhhhcCC-----EEEEe--CCccCcchHhHHHHHHhcCCcEEEEeeeecCCCc
Confidence 345667888899999999999 44444 6777777777777777556777778888888653
No 56
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=30.24 E-value=53 Score=31.02 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=21.6
Q ss_pred EEeeCCCCcccCchHHHHHHhhhhcCCc
Q 013212 133 VFNAVGGGTGSGLGSLLLERLSVDYGKK 160 (447)
Q Consensus 133 i~~sl~GGtGSG~~s~l~e~l~deyp~~ 160 (447)
++-+++||.|||= +-++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5678999999998 55778888888744
No 57
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=29.75 E-value=65 Score=32.37 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcc
Q 013212 110 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 142 (447)
Q Consensus 110 ~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtG 142 (447)
-.+++.++++..+++.+.-+|++++.++-|||=
T Consensus 41 ~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 41 NAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 346677788888888877789999999999984
No 58
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=29.02 E-value=1.6e+02 Score=30.73 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=56.0
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCC-CCccchhhHHH
Q 013212 106 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 184 (447)
Q Consensus 106 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~-~~~~~~~yN~~ 184 (447)
...+.+..+.+.|++.++. ..+||+|+|+.+ |= -.++..+..+- ..|+-.+++=+-.|.... ++.....++++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--TM-~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--TM-HYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--hH-HHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 4566777888888887764 489999999876 52 46666666655 445545556666776543 34444444444
Q ss_pred HHHHHhhccCCeeeeecch
Q 013212 185 LSTHSLLEHTDVAVLLDNE 203 (447)
Q Consensus 185 lsl~~l~e~sd~~i~~dN~ 203 (447)
..- . ...+-..|+|+.+
T Consensus 207 ~~A-~-~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 LAA-T-SDIAEVVVVMHGT 223 (419)
T ss_pred HHH-h-CCCCcEEEEECCc
Confidence 332 2 3345566777654
No 59
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=28.33 E-value=61 Score=30.27 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=41.3
Q ss_pred CccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEE
Q 013212 98 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF 165 (447)
Q Consensus 98 n~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~ 165 (447)
-...|++..-..+.+.+...++...+++...+=++.=|||||+ +++.+.-.|+..++...+.++
T Consensus 98 ~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~i~~~ 161 (229)
T cd00519 98 KVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSDVTVY 161 (229)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCceEEE
Confidence 3456666555667777788888888887777777888899765 445555556655433333333
No 60
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=28.07 E-value=26 Score=16.86 Aligned_cols=8 Identities=50% Similarity=1.414 Sum_probs=5.9
Q ss_pred hcCCCCcc
Q 013212 253 TNLVPYPR 260 (447)
Q Consensus 253 ~~L~p~p~ 260 (447)
..|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 35788887
No 61
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=25.84 E-value=50 Score=26.72 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=21.7
Q ss_pred cceeEEeeCCCCcccCchHHHHHHhhh
Q 013212 129 QGFLVFNAVGGGTGSGLGSLLLERLSV 155 (447)
Q Consensus 129 qgf~i~~sl~GGtGSG~~s~l~e~l~d 155 (447)
.+|-|+.+...|+|+.+.+.|++.+.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 477999999999998888888888754
No 62
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=25.52 E-value=1.3e+02 Score=32.11 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCC
Q 013212 114 CLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP 171 (447)
Q Consensus 114 ~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~ 171 (447)
..|.|.+.+-.-..=.++-+..++|+|+|| ||++|++ +-++++++.|..
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aS-F~a~l~~--------r~V~t~s~a~~d 149 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVAS-FGAYLLE--------RNVTTMSFAPND 149 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeeh-hHHHHhh--------CCceEEEccccc
Confidence 344444444321223467789999999985 8888874 356666666653
No 63
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=25.29 E-value=1.1e+02 Score=30.83 Aligned_cols=41 Identities=37% Similarity=0.583 Sum_probs=28.0
Q ss_pred HHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEE
Q 013212 120 KLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF 165 (447)
Q Consensus 120 ~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~ 165 (447)
+.++.+..+.|+-...++|||+| ..+=..+. .||+...+.+
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 34666777888999999998876 33333344 8988665544
No 64
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=24.90 E-value=93 Score=19.74 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=16.1
Q ss_pred ceeEEeeCCCCcccCchHHHHHHhhhhc
Q 013212 130 GFLVFNAVGGGTGSGLGSLLLERLSVDY 157 (447)
Q Consensus 130 gf~i~~sl~GGtGSG~~s~l~e~l~dey 157 (447)
..||..| || |.++.++..||++.
T Consensus 4 ~LqI~IS----Tn-G~sP~la~~iR~~i 26 (30)
T PF14824_consen 4 PLQIAIS----TN-GKSPRLARLIRKEI 26 (30)
T ss_dssp TEEEEEE----ES-SS-HHHHHHHHHHH
T ss_pred CeEEEEE----CC-CCChHHHHHHHHHH
Confidence 3577777 43 67799999998864
No 65
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=24.74 E-value=1.4e+02 Score=27.48 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=45.6
Q ss_pred cCCCceeecccccc-c--cccCCcceeecC------CCCcCCCccccccccchhhHHHHHHHHHHHHhhcCCCcceeEEe
Q 013212 65 DLEPTVIDEVRTGT-Y--RQLFHPEQLISG------KEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFN 135 (447)
Q Consensus 65 D~e~~~i~~~~~~~-~--~~~~~~~~~~~~------~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~ 135 (447)
|-+++++-+-.-++ + ..+||++--... ..+.|.||+-+. +++.+.+...+... .+-+-...-.+..
T Consensus 46 ~~dg~vvGS~LIGQ~Ft~~~yFhgRPsa~~~~~yn~~aSggSNl~psN----p~L~~rv~~~~~~l-r~~~~~~~~~vP~ 120 (190)
T COG2156 46 DGDGKVVGSALIGQNFTSPGYFHGRPSATDGEPYNAVASGGSNLGPSN----PELLERVKARVAAL-RAENPVNDSEVPV 120 (190)
T ss_pred cCCCcEeehhhhccccCCCccccCCCcccCCCCCCccccCCcCCCCCC----HHHHHHHHHHHHHH-HhcCCCCCCCCCH
Confidence 77777664433222 1 235655543221 234566777543 56666666664333 3334556678888
Q ss_pred eCCCCcccCchHHH
Q 013212 136 AVGGGTGSGLGSLL 149 (447)
Q Consensus 136 sl~GGtGSG~~s~l 149 (447)
++.-..|||+=+.|
T Consensus 121 dlvt~SgSGLDP~I 134 (190)
T COG2156 121 DLVTASGSGLDPHI 134 (190)
T ss_pred HHHhccccCCCCCC
Confidence 88888899976544
No 66
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=24.73 E-value=1.6e+02 Score=29.97 Aligned_cols=96 Identities=15% Similarity=0.046 Sum_probs=58.7
Q ss_pred chhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCC-CCCccchhhHHHH
Q 013212 107 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVL 185 (447)
Q Consensus 107 g~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~-~~~~~~~~yN~~l 185 (447)
-.+.+..+.+.|.+.+++. ..+||+|+|+.. | --.++.+++.+-+. |+-.+++=+-+|+.. .++.....+|++.
T Consensus 81 ~~~~w~~la~~I~~~~~~~-~~dGvVItHGTD--T-meeTA~~L~l~l~~-~kPVVlTGamr~s~~~~sDg~~NL~~Av~ 155 (351)
T COG0252 81 TPEDWLRLAEAINEALDDG-DVDGVVITHGTD--T-MEETAFFLSLTLNT-PKPVVLTGAMRPADAPSSDGPANLRNAVS 155 (351)
T ss_pred CHHHHHHHHHHHHHHhccC-CCCeEEEeCCCc--h-HHHHHHHHHHHhcC-CCCEEEeCCCCCCCCcCCCcHHHHHHHHH
Confidence 3455666666676666543 368999999876 5 25677778777665 444455556677754 3466666777776
Q ss_pred HHHHhhccCCeeeeecchhHHh
Q 013212 186 STHSLLEHTDVAVLLDNEAIYD 207 (447)
Q Consensus 186 sl~~l~e~sd~~i~~dN~~l~~ 207 (447)
.-..-.-.--.|++.-|+.++.
T Consensus 156 vA~~~~~~~~gV~v~~~~~i~~ 177 (351)
T COG0252 156 VAADPKSRGVGVLVVFNDRIHR 177 (351)
T ss_pred HhcCcccCCcEEEEecCceeee
Confidence 5543211222455555767664
No 67
>PTZ00489 glutamate 5-kinase; Provisional
Probab=23.98 E-value=3e+02 Score=26.71 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=29.1
Q ss_pred hhhhcCCcceeEEEEecCCCCCCccchhhHHHHHHHHhhccCCeeeeecch
Q 013212 153 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNE 203 (447)
Q Consensus 153 l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~ 203 (447)
..+.+.+.-+.+.-+++....-....+..|+.-++..|.+. .+||+=|.
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44555455555566666543223445556888888888876 45565433
No 68
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=23.93 E-value=41 Score=32.68 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHH
Q 013212 113 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER 152 (447)
Q Consensus 113 ~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~ 152 (447)
++++++|+.+++-..+ +|+|.|+|++++..|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 5788999998876555 5678899999888765
No 69
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=23.87 E-value=1.6e+02 Score=30.00 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHHHHhhcCCCcceeEEeeCCCCcccCchHHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHHH
Q 013212 108 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLST 187 (447)
Q Consensus 108 ~~~~e~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl 187 (447)
.++.+++.+.++.+.|.-..--|..+..-.++|.+.|+|..|+-.+.-++ .| -.+..-.++-|
T Consensus 216 ~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l----------~~-------Gi~iV~~~~~l 278 (378)
T COG1929 216 PEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL----------KS-------GIEIVLEATNL 278 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc----------cc-------cHHHHHHHhCH
Confidence 47778888899999888776667777777888888899999987775442 11 12344556678
Q ss_pred HHhhccCCeeee----ecchhHH
Q 013212 188 HSLLEHTDVAVL----LDNEAIY 206 (447)
Q Consensus 188 ~~l~e~sd~~i~----~dN~~l~ 206 (447)
....+-+|+||. +|++.+.
T Consensus 279 e~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 279 EDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred HHhhccCCEEEeCCCcccccccC
Confidence 888889999997 7777764
No 70
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=23.11 E-value=55 Score=19.95 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=9.3
Q ss_pred CCCcccCchHHHH
Q 013212 138 GGGTGSGLGSLLL 150 (447)
Q Consensus 138 ~GGtGSG~~s~l~ 150 (447)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 5788888876554
No 71
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.00 E-value=2.4e+02 Score=27.17 Aligned_cols=74 Identities=24% Similarity=0.365 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCCcceeEEeeCCCCcccC--chHHHHHHh---hhhcCCcc-eeEEEEecCCCCCCccchhhHHHHHHHH
Q 013212 116 DRIRKLADNCTGLQGFLVFNAVGGGTGSG--LGSLLLERL---SVDYGKKS-KLGFTVYPSPQVSTSVVEPYNSVLSTHS 189 (447)
Q Consensus 116 d~ir~~~E~cD~lqgf~i~~sl~GGtGSG--~~s~l~e~l---~deyp~~~-~~~~~v~P~~~~~~~~~~~yN~~lsl~~ 189 (447)
++++..++. ..||+.+.|+.|-||.. +...+.+.+ |... +.+ .+.+.| ++.-....
T Consensus 154 eri~~i~~~---~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~vgfGI--------------~~~e~~~~ 215 (256)
T TIGR00262 154 ERLKQIAEK---SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS-AKPVLVGFGI--------------SKPEQVKQ 215 (256)
T ss_pred HHHHHHHHh---CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc-CCCEEEeCCC--------------CCHHHHHH
Confidence 455555554 56889988888888763 555555554 4432 222 111112 23334556
Q ss_pred hhcc-CCeeeeecchhHHhhh
Q 013212 190 LLEH-TDVAVLLDNEAIYDIC 209 (447)
Q Consensus 190 l~e~-sd~~i~~dN~~l~~~~ 209 (447)
+.+. +|++++= .++.+..
T Consensus 216 ~~~~GADgvVvG--Saiv~~~ 234 (256)
T TIGR00262 216 AIDAGADGVIVG--SAIVKII 234 (256)
T ss_pred HHHcCCCEEEEC--HHHHHHH
Confidence 6777 8988774 3444433
No 72
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=20.03 E-value=60 Score=29.29 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHHHHH--hhccccceecccccccChhhHHHHHHHHHHHHHHHHHHc
Q 013212 378 TSVAEVFSRIDHKFDL--MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 432 (447)
Q Consensus 378 t~i~~~l~~l~~~~~~--m~~rkAflh~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~ 432 (447)
..|...+.+|.+-+.. =|..-.||+||+.|+.+|+. .+.++++.++-++
T Consensus 95 q~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~------l~~~I~d~~~~ag 145 (167)
T COG1528 95 QKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK------LFKTILDKLELAG 145 (167)
T ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcC
Confidence 3344444445444433 24566899999999996543 2335555555443
Done!