Query 013213
Match_columns 447
No_of_seqs 279 out of 736
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 01:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.6 1.2E-16 2.6E-21 137.3 5.4 67 326-394 1-78 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.9 1.2E-05 2.5E-10 50.8 3.2 21 134-154 1-21 (21)
3 KOG0160 Myosin class V heavy c 97.7 0.00011 2.3E-09 83.3 8.6 63 133-199 672-735 (862)
4 smart00015 IQ Short calmodulin 97.4 0.00015 3.2E-09 47.9 2.8 22 133-154 2-23 (26)
5 KOG0160 Myosin class V heavy c 97.2 0.00052 1.1E-08 77.9 6.8 79 118-199 679-758 (862)
6 PTZ00014 myosin-A; Provisional 96.8 0.0019 4.2E-08 73.4 5.9 40 135-174 778-818 (821)
7 PF00612 IQ: IQ calmodulin-bin 96.6 0.0025 5.4E-08 40.2 3.3 20 157-176 2-21 (21)
8 KOG0520 Uncharacterized conser 96.5 0.0018 4E-08 74.0 3.3 68 132-199 808-883 (975)
9 KOG2128 Ras GTPase-activating 96.1 0.013 2.7E-07 69.2 7.1 86 114-199 537-639 (1401)
10 KOG0164 Myosin class I heavy c 95.9 0.028 6.1E-07 63.0 8.6 55 134-199 696-751 (1001)
11 smart00015 IQ Short calmodulin 95.0 0.025 5.4E-07 37.3 2.9 19 157-175 4-22 (26)
12 PTZ00014 myosin-A; Provisional 94.0 0.14 3E-06 58.7 7.6 39 158-199 779-817 (821)
13 COG5022 Myosin heavy chain [Cy 93.9 0.11 2.4E-06 61.9 6.7 42 133-174 744-786 (1463)
14 KOG2128 Ras GTPase-activating 86.8 1.2 2.5E-05 53.5 6.2 59 139-200 540-610 (1401)
15 KOG0520 Uncharacterized conser 86.8 0.65 1.4E-05 54.0 4.1 67 133-199 832-931 (975)
16 KOG0161 Myosin class II heavy 82.4 3.4 7.4E-05 51.6 7.6 43 157-199 774-816 (1930)
17 KOG0377 Protein serine/threoni 79.4 2.7 5.8E-05 45.7 4.8 35 131-165 14-48 (631)
18 KOG4427 E3 ubiquitin protein l 78.4 1.8 4E-05 49.4 3.3 25 131-155 27-51 (1096)
19 KOG0942 E3 ubiquitin protein l 78.3 1.5 3.2E-05 50.8 2.6 26 131-156 26-51 (1001)
20 KOG0162 Myosin class I heavy c 65.8 11 0.00024 43.4 5.6 41 135-178 697-738 (1106)
21 KOG0161 Myosin class II heavy 65.5 17 0.00036 45.9 7.6 42 133-174 772-817 (1930)
22 KOG0164 Myosin class I heavy c 62.4 25 0.00054 40.6 7.6 38 158-199 698-735 (1001)
23 KOG0163 Myosin class VI heavy 61.8 9.2 0.0002 44.1 4.2 33 133-165 812-845 (1259)
24 COG5022 Myosin heavy chain [Cy 51.0 63 0.0014 39.8 8.8 66 132-198 791-858 (1463)
25 KOG0942 E3 ubiquitin protein l 49.4 18 0.00039 42.4 3.9 24 157-180 30-53 (1001)
26 KOG4427 E3 ubiquitin protein l 39.2 78 0.0017 37.0 6.8 24 157-180 31-54 (1096)
27 PF08763 Ca_chan_IQ: Voltage g 37.7 35 0.00076 24.9 2.6 21 133-153 8-28 (35)
28 PF10115 HlyU: Transcriptional 37.0 25 0.00054 30.5 2.1 24 1-28 1-24 (91)
29 PF15157 IQ-like: IQ-like 36.7 28 0.0006 30.2 2.3 20 133-152 46-65 (97)
30 KOG0163 Myosin class VI heavy 35.6 41 0.00089 39.2 4.0 23 158-180 815-837 (1259)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.65 E-value=1.2e-16 Score=137.35 Aligned_cols=67 Identities=46% Similarity=0.689 Sum_probs=50.9
Q ss_pred CCCCcccCCC----CCCCCCCCcccccccccCCCCCcccccccccccchhccCCCCCCCCCC-------CCccccchhhh
Q 013213 326 STPRFVSFDR----SKAPATPAKSVCADNFFRQYNFPNYMANTKSFKAKLRSHSAPKQRPEP-------GPKRRLSLNEM 394 (447)
Q Consensus 326 ssP~~~s~~~----~~~p~tp~ks~~~~~~~~~~~~PNYMAnTESSkAKvRSQSAPKQRPet-------~~rkR~sl~~~ 394 (447)
|||||.+... .....++.+.+|.++.+. .+|||||+|||+|||+||||||||||+. ..++|+||+..
T Consensus 1 nsPr~~s~~~~~~~~~~~~s~~~~~~~~~s~~--~~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~ 78 (102)
T PF13178_consen 1 NSPRLRSASSRSSSSPSRSSPQKSSCRRSSFG--SLPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGS 78 (102)
T ss_pred CCCCccCcccCCCCCcccCCCcccccccCcCC--CCCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCC
Confidence 6788665421 223345667777777665 3999999999999999999999999986 35789998754
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.91 E-value=1.2e-05 Score=50.80 Aligned_cols=21 Identities=52% Similarity=0.816 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHH
Q 013213 134 KWAAVKIQSVFRGYLARRALR 154 (447)
Q Consensus 134 e~AAIkIQsafRGylaRKa~r 154 (447)
+.|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999885
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.69 E-value=0.00011 Score=83.28 Aligned_cols=63 Identities=38% Similarity=0.409 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 133 EKWAAVKIQSVFRGYLARRALRAL-KGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa~ral-r~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
...+++.||+.||||+.|+.|..+ ++++.||+++||++.|+ ..+ ...+++.||..+|++..|+
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~ 735 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRR 735 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHH
Confidence 446788899999999999999999 68999999999999999 222 4567778888888888776
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.38 E-value=0.00015 Score=47.86 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q 013213 133 EKWAAVKIQSVFRGYLARRALR 154 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa~r 154 (447)
++.+|++||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4688999999999999999884
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.24 E-value=0.00052 Score=77.86 Aligned_cols=79 Identities=29% Similarity=0.320 Sum_probs=62.9
Q ss_pred cccCCCCCCcCc-chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 013213 118 LTSHGRGTMFGG-ATHEKWAAVKIQSVFRGYLARRALRALKGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQR 196 (447)
Q Consensus 118 lt~~~r~~~~~~-~~ree~AAIkIQsafRGylaRKa~ralr~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~r 196 (447)
++...++++... +.....+++.||+.+||+++|+......+.+.||..+|+++.|++|.... .+++.||+.+|+..
T Consensus 679 iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~---~~~~~~qs~~r~~~ 755 (862)
T KOG0160|consen 679 IQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRALI---PASITIQSGVRAML 755 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 444444443311 45677899999999999999984443378999999999999999996655 58999999999999
Q ss_pred HHh
Q 013213 197 ARA 199 (447)
Q Consensus 197 aRr 199 (447)
+|.
T Consensus 756 ~r~ 758 (862)
T KOG0160|consen 756 ARN 758 (862)
T ss_pred hcc
Confidence 986
No 6
>PTZ00014 myosin-A; Provisional
Probab=96.76 E-value=0.0019 Score=73.42 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHhhHHHHHH
Q 013213 135 WAAVKIQSVFRGYLARRALRAL-KGLVKLQAHVRGYLVRKQ 174 (447)
Q Consensus 135 ~AAIkIQsafRGylaRKa~ral-r~iVkLQAlvRG~lvRRq 174 (447)
..++.||++||||++|+.|+.+ .+++.||+.+|||++++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888888888888888887 688888888888888875
No 7
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.63 E-value=0.0025 Score=40.17 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 013213 157 KGLVKLQAHVRGYLVRKQTT 176 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~~ 176 (447)
+++|.||+.|||+++|++|.
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999999873
No 8
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.47 E-value=0.0018 Score=74.01 Aligned_cols=68 Identities=35% Similarity=0.455 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhH-------hHHHHHHHHHHHHHHHh
Q 013213 132 HEKWAAVKIQSVFRGYLARRALRAL-KGLVKLQAHVRGYLVRKQTTATLHGM-------QALIRAQVTARSQRARA 199 (447)
Q Consensus 132 ree~AAIkIQsafRGylaRKa~ral-r~iVkLQAlvRG~lvRRq~~~~l~~~-------qA~vkIQa~iR~~raRr 199 (447)
....||..||..||||+.|+.|..+ .-+|+||+.+|||.+|++|....+.. -++=++|+-+|+++.+.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~ 883 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRA 883 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhccccccc
Confidence 4567999999999999999999999 57999999999999999998655543 33344666666666554
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.05 E-value=0.013 Score=69.22 Aligned_cols=86 Identities=29% Similarity=0.367 Sum_probs=65.6
Q ss_pred hhhhcccCCCCCCcCc--------chhHHHHHHHHHHhhhhHHH---HHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHH
Q 013213 114 AVVRLTSHGRGTMFGG--------ATHEKWAAVKIQSVFRGYLA---RRALRAL--KGLVKLQAHVRGYLVRKQTTATLH 180 (447)
Q Consensus 114 ~vvrlt~~~r~~~~~~--------~~ree~AAIkIQsafRGyla---RKa~ral--r~iVkLQAlvRG~lvRRq~~~~l~ 180 (447)
...+.|+.+||+.+.. ........+.||.+||||+. +..|..- +-||++|++.||+++|+.+...++
T Consensus 537 ~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q 616 (1401)
T KOG2128|consen 537 EKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQ 616 (1401)
T ss_pred cchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444577788865421 23467889999999999995 2222222 689999999999999998875554
Q ss_pred ----hHhHHHHHHHHHHHHHHHh
Q 013213 181 ----GMQALIRAQVTARSQRARA 199 (447)
Q Consensus 181 ----~~qA~vkIQa~iR~~raRr 199 (447)
+|..+++||+.+|....|.
T Consensus 617 ~~~~~~~~~i~iqs~~r~f~~r~ 639 (1401)
T KOG2128|consen 617 YFKDNMTKIIKIQSKIRKFPNRK 639 (1401)
T ss_pred HHHHhhhhHHHHHHHHHhcccch
Confidence 5899999999999999987
No 10
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=95.90 E-value=0.028 Score=62.96 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 134 KWAAVKIQSVFRGYLARRALRALKG-LVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 134 e~AAIkIQsafRGylaRKa~ralr~-iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
-.-|+.||++||||++|..|+.++. ++.|+ .+|.|.++- .+..||.++|+.+.++
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r 751 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMR 751 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhcc
Confidence 3578999999999999999999965 44445 667443332 3456899999999887
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.04 E-value=0.025 Score=37.25 Aligned_cols=19 Identities=42% Similarity=0.670 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 013213 157 KGLVKLQAHVRGYLVRKQT 175 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~ 175 (447)
+.++.||+.+||+++|++|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999988
No 12
>PTZ00014 myosin-A; Provisional
Probab=93.98 E-value=0.14 Score=58.72 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 158 GLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 158 ~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
.++.||+.|||++.|++|..+ .++++.||+.+|++..++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 567899999999999999665 468999999999999887
No 13
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=93.88 E-value=0.11 Score=61.88 Aligned_cols=42 Identities=29% Similarity=0.363 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHhhHHHHHH
Q 013213 133 EKWAAVKIQSVFRGYLARRALRAL-KGLVKLQAHVRGYLVRKQ 174 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa~ral-r~iVkLQAlvRG~lvRRq 174 (447)
-...++.||++|||++.|+.|..- +.+..+|.+.+|.++++.
T Consensus 744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~ 786 (1463)
T COG5022 744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRL 786 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 346899999999999999988776 555555555555555543
No 14
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=86.83 E-value=1.2 Score=53.52 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=48.2
Q ss_pred HHHHhhhhHHHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHHH----HhHhHHHHHHHHHHHHHHHhc
Q 013213 139 KIQSVFRGYLARRALRALK--------GLVKLQAHVRGYLVRKQTTATL----HGMQALIRAQVTARSQRARAC 200 (447)
Q Consensus 139 kIQsafRGylaRKa~ralr--------~iVkLQAlvRG~lvRRq~~~~l----~~~qA~vkIQa~iR~~raRr~ 200 (447)
+||+..||+..|-+++... .++.||++|||+++ |.... ....-+|++|+..|+...|+.
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~ 610 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKK 610 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 4499999999999988772 78899999999997 43222 234789999999999999986
No 15
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=86.77 E-value=0.65 Score=53.99 Aligned_cols=67 Identities=27% Similarity=0.340 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH-HH----------HHHHHHHHhhHHHHHHHH----------------------HHH
Q 013213 133 EKWAAVKIQSVFRGYLARRALRAL-KG----------LVKLQAHVRGYLVRKQTT----------------------ATL 179 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa~ral-r~----------iVkLQAlvRG~lvRRq~~----------------------~~l 179 (447)
-..-+|+||+++|||..|+.|+.| .+ .-++|.-+||+..|.... ...
T Consensus 832 tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~ 911 (975)
T KOG0520|consen 832 TRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEE 911 (975)
T ss_pred cCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999988 21 124588899988775321 011
Q ss_pred HhHhHHHHHHHHHHHHHHHh
Q 013213 180 HGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 180 ~~~qA~vkIQa~iR~~raRr 199 (447)
+--+|+++||+.+|...++.
T Consensus 912 r~~~A~~~VQsm~rs~~a~q 931 (975)
T KOG0520|consen 912 RLTRAVVRVQSMFRSPKAQQ 931 (975)
T ss_pred HHHHHHHHHHHHhcCHHHHH
Confidence 11389999999999998884
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=82.36 E-value=3.4 Score=51.62 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 157 KGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
.-|+.+||.||||++|+.|...+..+.++..||.-+|.+...+
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677789999999999988888888889989999998886555
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=79.39 E-value=2.7 Score=45.66 Aligned_cols=35 Identities=31% Similarity=0.217 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013213 131 THEKWAAVKIQSVFRGYLARRALRALKGLVKLQAH 165 (447)
Q Consensus 131 ~ree~AAIkIQsafRGylaRKa~ralr~iVkLQAl 165 (447)
.+-.+|||.||++||+|.||.+.+..-.....|++
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 45578999999999999999987776555555554
No 18
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.35 E-value=1.8 Score=49.41 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHH
Q 013213 131 THEKWAAVKIQSVFRGYLARRALRA 155 (447)
Q Consensus 131 ~ree~AAIkIQsafRGylaRKa~ra 155 (447)
.+.+.||+.||..||||++||.|..
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998754
No 19
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.27 E-value=1.5 Score=50.84 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHH
Q 013213 131 THEKWAAVKIQSVFRGYLARRALRAL 156 (447)
Q Consensus 131 ~ree~AAIkIQsafRGylaRKa~ral 156 (447)
.+++++||+||+.||||++|+..+.+
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998777
No 20
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=65.82 E-value=11 Score=43.43 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHH
Q 013213 135 WAAVKIQSVFRGYLARRALRALK-GLVKLQAHVRGYLVRKQTTAT 178 (447)
Q Consensus 135 ~AAIkIQsafRGylaRKa~ralr-~iVkLQAlvRG~lvRRq~~~~ 178 (447)
.-|.+||++||.|++||.|..++ -..+ |.-|...||++...
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~Si~ 738 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRYSIN 738 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHH
Confidence 47999999999999999999994 1222 44577788877443
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=65.53 E-value=17 Score=45.93 Aligned_cols=42 Identities=26% Similarity=0.455 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHhhHHHHHH
Q 013213 133 EKWAAVKIQSVFRGYLARRALRAL----KGLVKLQAHVRGYLVRKQ 174 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa~ral----r~iVkLQAlvRG~lvRRq 174 (447)
...-.+.+|+.+||||+|+.|... .+|+.||.-+|-|+.-|.
T Consensus 772 ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 772 LSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345788999999999999999887 389999999999977764
No 22
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=62.44 E-value=25 Score=40.61 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 158 GLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 158 ~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
-+..||..|||.++|.+|..++. +++.|+ .+|..+.+.
T Consensus 698 lvtllQK~~RG~~~R~ry~rmka---~~~ii~-wyR~~K~ks 735 (1001)
T KOG0164|consen 698 LVTLLQKAWRGWLARQRYRRMKA---SATIIR-WYRRYKLKS 735 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHH
Confidence 45678999999999999966553 344344 777666553
No 23
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=61.81 E-value=9.2 Score=44.15 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHH
Q 013213 133 EKWAAVKIQSVFRGYLARRALRAL-KGLVKLQAH 165 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa~ral-r~iVkLQAl 165 (447)
+..+++++|+..||||+|+.++.. .+++++-+|
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 456889999999999999998766 555555443
No 24
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=50.99 E-value=63 Score=39.83 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHH-HHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 013213 132 HEKWAAVKIQSVFRGYLARRALRAL-KGLVKLQ-AHVRGYLVRKQTTATLHGMQALIRAQVTARSQRAR 198 (447)
Q Consensus 132 ree~AAIkIQsafRGylaRKa~ral-r~iVkLQ-AlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raR 198 (447)
....++++||..|+.+..|+.|+.. ..|..|| .+.+...++-.... ...+.+.+.+|..+|....+
T Consensus 791 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~-~~~~~~~~L~~~~~rs~~~~ 858 (1463)
T COG5022 791 LKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEV-EFSLKAEVLIQKFGRSLKAK 858 (1463)
T ss_pred hHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHhhhhh
Confidence 4557899999999999999988887 5666777 45555444442221 11223444445544444433
No 25
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.35 E-value=18 Score=42.41 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 013213 157 KGLVKLQAHVRGYLVRKQTTATLH 180 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~~~~l~ 180 (447)
++.|++|++|||+++|++.....+
T Consensus 30 ~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 30 KNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999998765544
No 26
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.24 E-value=78 Score=37.03 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 013213 157 KGLVKLQAHVRGYLVRKQTTATLH 180 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~~~~l~ 180 (447)
.+.+.||+++|||++||++...++
T Consensus 31 ~aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999875554
No 27
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=37.74 E-value=35 Score=24.86 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 013213 133 EKWAAVKIQSVFRGYLARRAL 153 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa~ 153 (447)
.--|+..||-.||-+..|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999998864
No 28
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=37.05 E-value=25 Score=30.51 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=15.8
Q ss_pred CchhhHHHHHhhcCCCCCCCCCCCCCCC
Q 013213 1 MGRATRWLKSLFGIKNTTSANSGDRRDK 28 (447)
Q Consensus 1 MGka~rw~r~llg~kk~~~~~~~~~~~~ 28 (447)
|| +|++||||++..+.....|-++
T Consensus 1 M~----~~s~LFGg~~~~~~~~~ep~eY 24 (91)
T PF10115_consen 1 MS----FFSRLFGGGKKSEPKEAEPVEY 24 (91)
T ss_pred Cc----HHHHhhCCCCCCCCCccCCeEe
Confidence 77 9999999987644433333333
No 29
>PF15157 IQ-like: IQ-like
Probab=36.75 E-value=28 Score=30.24 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhhHHHHHH
Q 013213 133 EKWAAVKIQSVFRGYLARRA 152 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa 152 (447)
-+.-+..||.+||-|++|..
T Consensus 46 Leskvkiiqrawre~lq~qd 65 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQD 65 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcC
Confidence 45678899999999999865
No 30
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=35.59 E-value=41 Score=39.21 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 013213 158 GLVKLQAHVRGYLVRKQTTATLH 180 (447)
Q Consensus 158 ~iVkLQAlvRG~lvRRq~~~~l~ 180 (447)
.++++|+.+||||+|+++...+.
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchHHH
Confidence 67888999999999998864443
Done!