Query 013213
Match_columns 447
No_of_seqs 279 out of 736
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.2 2.6E-11 8.9E-16 92.3 7.0 49 132-180 3-52 (58)
2 1n2d_C IQ2 and IQ3 motifs from 99.0 7E-10 2.4E-14 81.2 6.5 42 134-175 3-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.8 1.1E-08 3.7E-13 116.2 10.5 65 134-199 768-833 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.8 9.5E-09 3.2E-13 116.7 8.9 84 115-199 794-881 (1080)
5 1n2d_C IQ2 and IQ3 motifs from 98.4 7.6E-07 2.6E-11 64.9 6.7 42 157-199 4-45 (48)
6 2ix7_C Myosin-5A; contractIle 98.0 8.7E-06 3E-10 61.6 6.5 40 157-199 6-45 (58)
7 1wdc_A Scallop myosin; calcium 97.6 0.00014 4.8E-09 56.2 7.4 41 159-199 9-49 (64)
8 2bl0_A Major plasmodial myosin 97.6 9.8E-05 3.3E-09 57.0 6.0 42 158-199 6-47 (63)
9 1wdc_A Scallop myosin; calcium 97.6 0.00015 5E-09 56.1 6.6 44 132-175 4-51 (64)
10 2bl0_A Major plasmodial myosin 97.5 0.00013 4.5E-09 56.2 5.4 42 134-175 4-49 (63)
11 2l53_B CAM, voltage-gated sodi 97.3 0.00014 4.8E-09 49.8 3.1 24 131-154 3-26 (31)
12 2kxw_B Sodium channel protein 97.3 0.00012 4E-09 48.8 2.2 22 131-152 3-24 (27)
13 1kk8_A Myosin heavy chain, str 97.2 0.00039 1.3E-08 77.5 7.1 44 133-176 778-825 (837)
14 1kk8_A Myosin heavy chain, str 96.7 0.0034 1.2E-07 70.0 8.7 43 157-199 780-822 (837)
15 1i84_S Smooth muscle myosin he 96.4 0.0029 9.9E-08 72.5 6.2 42 134-175 792-837 (1184)
16 1i84_S Smooth muscle myosin he 95.9 0.015 5E-07 66.7 8.3 52 148-199 783-835 (1184)
17 3gn4_A Myosin-VI; unconvention 95.2 0.022 7.4E-07 51.6 5.2 48 111-166 30-78 (148)
18 4anj_A Unconventional myosin-V 90.1 0.45 1.5E-05 54.4 7.4 43 133-176 774-817 (1052)
19 4dck_A Sodium channel protein 87.6 0.38 1.3E-05 44.3 3.7 26 131-156 127-152 (168)
20 1w7j_A Myosin VA; motor protei 87.3 0.32 1.1E-05 54.0 3.6 23 135-157 769-791 (795)
21 3gn4_A Myosin-VI; unconvention 86.0 1.4 4.9E-05 39.8 6.4 30 158-190 47-76 (148)
22 4anj_A Unconventional myosin-V 71.6 4.8 0.00016 46.2 6.2 40 157-199 775-814 (1052)
23 1w7j_A Myosin VA; motor protei 67.4 5.2 0.00018 44.5 5.3 24 157-180 769-792 (795)
24 2l53_B CAM, voltage-gated sodi 48.6 12 0.00043 25.4 2.6 17 158-174 8-24 (31)
25 3dvk_B Voltage-dependent R-typ 26.4 24 0.00082 22.6 1.1 19 133-151 5-23 (23)
26 2ycu_A Non muscle myosin 2C, a 23.7 15 0.0005 41.8 -0.4 40 137-176 767-807 (995)
27 3bxl_B CAM, voltage-dependent 21.7 57 0.0019 21.4 2.2 18 135-152 3-20 (26)
28 2f3y_B Voltage-dependent L-typ 20.9 55 0.0019 21.5 2.0 19 136-154 4-22 (26)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.20 E-value=2.6e-11 Score=92.27 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHH
Q 013213 132 HEKWAAVKIQSVFRGYLARRALRAL-KGLVKLQAHVRGYLVRKQTTATLH 180 (447)
Q Consensus 132 ree~AAIkIQsafRGylaRKa~ral-r~iVkLQAlvRG~lvRRq~~~~l~ 180 (447)
+.+.|||.||+.||||++|+.|+.+ .++|.||+.|||+++|+.|..+..
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~ 52 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRR 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999 699999999999999999976554
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.99 E-value=7e-10 Score=81.20 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH-H--HHHHHHHHHhhHHHHHHH
Q 013213 134 KWAAVKIQSVFRGYLARRALRAL-K--GLVKLQAHVRGYLVRKQT 175 (447)
Q Consensus 134 e~AAIkIQsafRGylaRKa~ral-r--~iVkLQAlvRG~lvRRq~ 175 (447)
..+||.||+.||||++|+.|..+ + ++|+||++|||+++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 36899999999999999999988 3 899999999999999986
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.80 E-value=1.1e-08 Score=116.23 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 134 KWAAVKIQSVFRGYLARRALRAL-KGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 134 e~AAIkIQsafRGylaRKa~ral-r~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
..+|++||++||||++|+.|+.+ .+++.||+.+||+++|+++.. ++...|+++||+.||++++|+
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-lr~~~AAi~IQs~~Rg~~~Rk 833 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTRAAIIIQKFQRMYVVRK 833 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc-cccchhHHHHHHHHhhHHHHH
Confidence 57999999999999999999999 689999999999999998854 455678888888888888876
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.77 E-value=9.5e-09 Score=116.70 Aligned_cols=84 Identities=29% Similarity=0.343 Sum_probs=61.3
Q ss_pred hhhcccCCCCCCcC---cchhHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHH
Q 013213 115 VVRLTSHGRGTMFG---GATHEKWAAVKIQSVFRGYLARRALRAL-KGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQV 190 (447)
Q Consensus 115 vvrlt~~~r~~~~~---~~~ree~AAIkIQsafRGylaRKa~ral-r~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa 190 (447)
++.+|+..||++.. ...++..||++||++||||++|+.|..+ .++|.||+.|||+++|++|..++. ..+++.||+
T Consensus 794 ai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr~-~~aav~IQ~ 872 (1080)
T 2dfs_A 794 AITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLR-EHKSIIIQK 872 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44555555554321 1245678999999999999999999998 688999999999999998865443 346666777
Q ss_pred HHHHHHHHh
Q 013213 191 TARSQRARA 199 (447)
Q Consensus 191 ~iR~~raRr 199 (447)
.||++.+|+
T Consensus 873 ~~Rg~l~R~ 881 (1080)
T 2dfs_A 873 HVRGWLARV 881 (1080)
T ss_dssp HHTTTHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.38 E-value=7.6e-07 Score=64.95 Aligned_cols=42 Identities=19% Similarity=0.387 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 157 KGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
.++|.||+.+||+++|+++..+ +...++++||+.|||+.+|+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~-~~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDE-MKVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHH
Confidence 5789999999999999999654 44569999999999999986
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.05 E-value=8.7e-06 Score=61.59 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 157 KGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
.++|.||+.|||+++|+.|..+. .+++.||+.|||+.+|+
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~~r---~aai~IQ~~~Rg~~aR~ 45 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLCMQ---RAAITVQRYVRGYQARC 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 58999999999999999996655 59999999999999997
No 7
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.64 E-value=0.00014 Score=56.17 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=20.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 159 LVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 159 iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
++.||+.+||+++|+.|..++...+|+..||..+|++..++
T Consensus 9 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 9 ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44445555555555555444444445545555555554443
No 8
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.61 E-value=9.8e-05 Score=56.97 Aligned_cols=42 Identities=19% Similarity=0.072 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 158 GLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 158 ~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
.++.||+.+||+++|+.|..++...+|+..||..+|++..++
T Consensus 6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666666666666666666666666666666666666654
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.57 E-value=0.00015 Score=56.08 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHhhHHHHHHH
Q 013213 132 HEKWAAVKIQSVFRGYLARRALRAL----KGLVKLQAHVRGYLVRKQT 175 (447)
Q Consensus 132 ree~AAIkIQsafRGylaRKa~ral----r~iVkLQAlvRG~lvRRq~ 175 (447)
+-...++.||+..|||++|+.|..+ .++..||..+|+++.++..
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4457899999999999999999999 3788999999999999865
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.50 E-value=0.00013 Score=56.23 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHhhHHHHHHH
Q 013213 134 KWAAVKIQSVFRGYLARRALRAL----KGLVKLQAHVRGYLVRKQT 175 (447)
Q Consensus 134 e~AAIkIQsafRGylaRKa~ral----r~iVkLQAlvRG~lvRRq~ 175 (447)
...++.||+..|||++|+.|..+ .++..||..+|+++.++..
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 46789999999999999999999 3788999999999998854
No 11
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.31 E-value=0.00014 Score=49.85 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHH
Q 013213 131 THEKWAAVKIQSVFRGYLARRALR 154 (447)
Q Consensus 131 ~ree~AAIkIQsafRGylaRKa~r 154 (447)
.+|+.+|+.||.+||+||.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999997643
No 12
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.27 E-value=0.00012 Score=48.77 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHH
Q 013213 131 THEKWAAVKIQSVFRGYLARRA 152 (447)
Q Consensus 131 ~ree~AAIkIQsafRGylaRKa 152 (447)
.+|+.||+.||.+||+||.++.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999864
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.21 E-value=0.00039 Score=77.48 Aligned_cols=44 Identities=32% Similarity=0.454 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHH
Q 013213 133 EKWAAVKIQSVFRGYLARRALRAL----KGLVKLQAHVRGYLVRKQTT 176 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa~ral----r~iVkLQAlvRG~lvRRq~~ 176 (447)
....|+.||++||||++|+.|+.+ .+++.||..||||++||.+.
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 345788999999999999999887 47889999999999998763
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.67 E-value=0.0034 Score=70.00 Aligned_cols=43 Identities=30% Similarity=0.291 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 157 KGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
+.++.||+.|||+++|++|..++....|++.||+.||++.+++
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r 822 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 822 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5788999999999999999988877889999999999999987
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.42 E-value=0.0029 Score=72.46 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHhhHHHHHHH
Q 013213 134 KWAAVKIQSVFRGYLARRALRAL----KGLVKLQAHVRGYLVRKQT 175 (447)
Q Consensus 134 e~AAIkIQsafRGylaRKa~ral----r~iVkLQAlvRG~lvRRq~ 175 (447)
..+|+.||+.||||++|+.|..+ .+++.||+.||||+.+|.+
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36899999999999999999988 4899999999999999754
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.85 E-value=0.015 Score=66.74 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=43.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 148 LARRALRAL-KGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 148 laRKa~ral-r~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
|....-..+ ..++.||+.|||+++|++|..++....+++.||+.||++..++
T Consensus 783 LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k 835 (1184)
T 1i84_S 783 LEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVX 835 (1184)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443333444 5788999999999999999988888899999999999999987
No 17
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.16 E-value=0.022 Score=51.60 Aligned_cols=48 Identities=25% Similarity=0.382 Sum_probs=35.1
Q ss_pred hhHhhhhcccCCCCCCcCcchhHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHH
Q 013213 111 AAVAVVRLTSHGRGTMFGGATHEKWAAVKIQSVFRGYLARRALRAL-KGLVKLQAHV 166 (447)
Q Consensus 111 aa~~vvrlt~~~r~~~~~~~~ree~AAIkIQsafRGylaRKa~ral-r~iVkLQAlv 166 (447)
++--||+|.... .=+..++|+||+.+||||+|+.++-. .|++++.+|.
T Consensus 30 ~~lsvIKLknKI--------~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 30 CSLSVIKLKNKI--------KYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345566666321 23567889999999999999988876 7888877765
No 18
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=90.14 E-value=0.45 Score=54.42 Aligned_cols=43 Identities=7% Similarity=-0.000 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHH
Q 013213 133 EKWAAVKIQSVFRGYLARRALRAL-KGLVKLQAHVRGYLVRKQTT 176 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRKa~ral-r~iVkLQAlvRG~lvRRq~~ 176 (447)
...+|+.||. +|||++|+.|+.+ .++|.||.+.|+...|+...
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3467777775 7999999999999 58889999999887776543
No 19
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=87.60 E-value=0.38 Score=44.27 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHH
Q 013213 131 THEKWAAVKIQSVFRGYLARRALRAL 156 (447)
Q Consensus 131 ~ree~AAIkIQsafRGylaRKa~ral 156 (447)
..++.||+.||.+||.|+.|+.+..-
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~~ 152 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKHA 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccc
Confidence 56889999999999999998877653
No 20
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=87.28 E-value=0.32 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Q 013213 135 WAAVKIQSVFRGYLARRALRALK 157 (447)
Q Consensus 135 ~AAIkIQsafRGylaRKa~ralr 157 (447)
.+|+.||++||||++|+.|+.++
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777664
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=85.96 E-value=1.4 Score=39.78 Aligned_cols=30 Identities=17% Similarity=0.466 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHH
Q 013213 158 GLVKLQAHVRGYLVRKQTTATLHGMQALIRAQV 190 (447)
Q Consensus 158 ~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa 190 (447)
.+|+||+.||||++|+++.-.+. ++.++-+
T Consensus 47 ~~i~iQktvR~~L~rkkhkPRi~---g~~kv~~ 76 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKPRID---GLVKVGT 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH---HHHHHHH
Confidence 78889999999999999865543 4444433
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=71.58 E-value=4.8 Score=46.16 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q 013213 157 KGLVKLQAHVRGYLVRKQTTATLHGMQALIRAQVTARSQRARA 199 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~~~~l~~~qA~vkIQa~iR~~raRr 199 (447)
..++.||..+||+++|++|..+. .+++.||...|..+.|+
T Consensus 775 ~~~~~~iq~~r~~l~r~~~~k~~---~~a~~i~~~~r~~~~r~ 814 (1052)
T 4anj_A 775 DHLAELVKRVNHWLICSRWKKVQ---WCSLSVIKLKNKIKYRA 814 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 35555666789999999997655 46667777667666665
No 23
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=67.36 E-value=5.2 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 013213 157 KGLVKLQAHVRGYLVRKQTTATLH 180 (447)
Q Consensus 157 r~iVkLQAlvRG~lvRRq~~~~l~ 180 (447)
+.++.||+.|||+++||+|..++.
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999976543
No 24
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=48.61 E-value=12 Score=25.39 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhHHHHHH
Q 013213 158 GLVKLQAHVRGYLVRKQ 174 (447)
Q Consensus 158 ~iVkLQAlvRG~lvRRq 174 (447)
+.+.||..+|+|+.|+.
T Consensus 8 aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 8 SAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55677777777777664
No 25
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=26.40 E-value=24 Score=22.58 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhhHHHHH...
Q 013213 133 EKWAAVKIQSVFRGYLARR... 151 (447)
Q Consensus 133 ee~AAIkIQsafRGylaRK... 151 (447)
+.-|+..||-.||-++.|+
T Consensus 5 KiYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHHhccC...
Confidence 3468999999999988763
No 26
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=23.72 E-value=15 Score=41.82 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=27.2
Q ss_pred HHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHH
Q 013213 137 AVKIQSVFRGYLARRALRAL-KGLVKLQAHVRGYLVRKQTT 176 (447)
Q Consensus 137 AIkIQsafRGylaRKa~ral-r~iVkLQAlvRG~lvRRq~~ 176 (447)
|..++.++|+.+++..++.+ .+++.||.+++|+..++...
T Consensus 767 a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~e 807 (995)
T 2ycu_A 767 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE 807 (995)
T ss_dssp HHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 44566677777776666666 57778888888777666553
No 27
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=21.67 E-value=57 Score=21.42 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhHHHHHH
Q 013213 135 WAAVKIQSVFRGYLARRA 152 (447)
Q Consensus 135 ~AAIkIQsafRGylaRKa 152 (447)
-||..||-.||-+..|+.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999998875
No 28
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=20.88 E-value=55 Score=21.45 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhHHHHHHHH
Q 013213 136 AAVKIQSVFRGYLARRALR 154 (447)
Q Consensus 136 AAIkIQsafRGylaRKa~r 154 (447)
|...||-.||.+..|++-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999988743
Done!