Query 013215
Match_columns 447
No_of_seqs 296 out of 1722
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 1.1E-19 2.5E-24 182.7 8.7 95 303-425 202-297 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 4E-15 8.6E-20 107.5 1.4 43 360-402 2-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.4 3E-13 6.5E-18 135.2 7.3 53 355-407 284-346 (491)
4 COG5540 RING-finger-containing 99.3 9.9E-13 2.1E-17 128.6 4.1 50 358-407 323-373 (374)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 2.6E-12 5.7E-17 103.0 3.2 45 358-402 19-73 (73)
6 PHA02929 N1R/p28-like protein; 99.2 3.4E-12 7.3E-17 123.7 3.9 77 304-406 146-227 (238)
7 KOG0317 Predicted E3 ubiquitin 99.0 1.7E-10 3.6E-15 112.9 4.0 56 351-409 232-287 (293)
8 PLN03208 E3 ubiquitin-protein 99.0 2.7E-10 5.9E-15 106.6 4.9 59 354-415 14-88 (193)
9 KOG0823 Predicted E3 ubiquitin 99.0 1.1E-09 2.3E-14 104.5 7.8 57 356-415 45-104 (230)
10 cd00162 RING RING-finger (Real 98.9 8E-10 1.7E-14 78.1 3.0 44 360-405 1-45 (45)
11 KOG0802 E3 ubiquitin ligase [P 98.9 6.1E-10 1.3E-14 120.6 3.4 64 352-415 285-350 (543)
12 PF13920 zf-C3HC4_3: Zinc fing 98.9 4.5E-10 9.7E-15 83.3 1.6 47 358-407 2-49 (50)
13 PF12861 zf-Apc11: Anaphase-pr 98.9 1.9E-09 4.1E-14 88.2 4.0 50 357-406 20-82 (85)
14 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.5E-09 5.5E-14 75.2 2.0 39 361-401 1-39 (39)
15 PHA02926 zinc finger-like prot 98.7 6.5E-09 1.4E-13 98.7 2.8 51 356-406 168-230 (242)
16 smart00184 RING Ring finger. E 98.6 2.5E-08 5.5E-13 67.9 3.0 38 361-401 1-39 (39)
17 PF14634 zf-RING_5: zinc-RING 98.6 3E-08 6.4E-13 71.7 2.7 44 360-403 1-44 (44)
18 PF00097 zf-C3HC4: Zinc finger 98.6 2E-08 4.3E-13 71.0 1.5 39 361-401 1-41 (41)
19 smart00504 Ubox Modified RING 98.6 4.8E-08 1E-12 75.1 3.5 48 359-409 2-49 (63)
20 KOG1734 Predicted RING-contain 98.6 1.5E-08 3.3E-13 98.2 0.4 53 357-409 223-284 (328)
21 KOG0320 Predicted E3 ubiquitin 98.5 3.4E-08 7.4E-13 90.7 2.3 50 359-409 132-181 (187)
22 PF15227 zf-C3HC4_4: zinc fing 98.5 8.5E-08 1.8E-12 68.8 2.1 38 361-401 1-42 (42)
23 KOG1493 Anaphase-promoting com 98.4 5.5E-08 1.2E-12 77.4 1.1 48 358-405 20-80 (84)
24 COG5194 APC11 Component of SCF 98.4 1.4E-07 3E-12 75.7 3.1 40 368-407 41-82 (88)
25 KOG0828 Predicted E3 ubiquitin 98.4 4.9E-07 1.1E-11 94.0 7.5 49 359-407 572-635 (636)
26 TIGR00599 rad18 DNA repair pro 98.4 1.2E-07 2.7E-12 98.3 2.9 49 357-408 25-73 (397)
27 smart00744 RINGv The RING-vari 98.4 1.9E-07 4E-12 69.2 2.6 42 360-402 1-49 (49)
28 COG5574 PEX10 RING-finger-cont 98.3 3.6E-07 7.7E-12 88.8 3.4 52 355-409 212-265 (271)
29 COG5219 Uncharacterized conser 98.2 3.9E-07 8.4E-12 100.5 0.5 49 356-406 1467-1523(1525)
30 PF13445 zf-RING_UBOX: RING-ty 98.0 2.2E-06 4.7E-11 61.8 1.7 38 361-399 1-43 (43)
31 PF04564 U-box: U-box domain; 98.0 3.1E-06 6.8E-11 67.7 1.8 51 357-410 3-54 (73)
32 KOG2930 SCF ubiquitin ligase, 98.0 3.1E-06 6.7E-11 71.2 1.8 26 379-404 81-106 (114)
33 KOG0825 PHD Zn-finger protein 98.0 2.8E-06 6E-11 92.5 1.5 54 358-411 123-176 (1134)
34 KOG0827 Predicted E3 ubiquitin 97.9 8E-06 1.7E-10 83.1 2.9 49 358-406 4-56 (465)
35 TIGR00570 cdk7 CDK-activating 97.8 9.9E-06 2.2E-10 81.3 3.3 52 358-409 3-57 (309)
36 KOG2164 Predicted E3 ubiquitin 97.8 9.5E-06 2.1E-10 85.4 2.5 51 358-411 186-241 (513)
37 KOG4445 Uncharacterized conser 97.8 7.6E-06 1.6E-10 80.8 1.3 51 360-410 117-190 (368)
38 KOG2177 Predicted E3 ubiquitin 97.8 8.3E-06 1.8E-10 78.7 1.3 45 356-403 11-55 (386)
39 PF11793 FANCL_C: FANCL C-term 97.8 5.1E-06 1.1E-10 66.1 -0.4 49 359-407 3-67 (70)
40 KOG0287 Postreplication repair 97.7 1.2E-05 2.6E-10 80.6 1.1 49 359-410 24-72 (442)
41 KOG4265 Predicted E3 ubiquitin 97.7 3.6E-05 7.9E-10 78.0 4.4 50 356-408 288-338 (349)
42 KOG0804 Cytoplasmic Zn-finger 97.7 1.3E-05 2.9E-10 82.9 1.2 49 356-406 173-222 (493)
43 KOG0824 Predicted E3 ubiquitin 97.6 2.9E-05 6.3E-10 76.9 2.1 54 358-414 7-61 (324)
44 COG5432 RAD18 RING-finger-cont 97.5 5.1E-05 1.1E-09 74.8 2.1 47 359-408 26-72 (391)
45 KOG1645 RING-finger-containing 97.5 8E-05 1.7E-09 76.5 3.2 50 359-408 5-58 (463)
46 KOG1039 Predicted E3 ubiquitin 97.3 8.9E-05 1.9E-09 75.9 2.0 52 356-407 159-222 (344)
47 KOG1428 Inhibitor of type V ad 97.2 0.00029 6.4E-09 80.9 3.7 59 351-409 3479-3547(3738)
48 KOG4172 Predicted E3 ubiquitin 97.1 0.00013 2.8E-09 54.8 0.4 47 358-407 7-55 (62)
49 KOG0311 Predicted E3 ubiquitin 97.0 9.8E-05 2.1E-09 74.7 -1.7 50 358-410 43-94 (381)
50 KOG1941 Acetylcholine receptor 96.8 0.00036 7.8E-09 71.4 0.5 48 358-405 365-415 (518)
51 KOG4159 Predicted E3 ubiquitin 96.8 0.00059 1.3E-08 71.2 2.0 50 356-408 82-131 (398)
52 PF05883 Baculo_RING: Baculovi 96.7 0.00066 1.4E-08 60.4 1.7 36 358-393 26-67 (134)
53 KOG1785 Tyrosine kinase negati 96.5 0.0016 3.4E-08 67.0 2.7 50 359-411 370-421 (563)
54 KOG3970 Predicted E3 ubiquitin 96.5 0.0021 4.6E-08 61.5 3.3 52 358-410 50-109 (299)
55 PHA02862 5L protein; Provision 96.5 0.0021 4.6E-08 57.7 3.1 45 359-407 3-54 (156)
56 KOG0801 Predicted E3 ubiquitin 96.4 0.0012 2.5E-08 60.3 1.1 33 353-385 172-204 (205)
57 PF12906 RINGv: RING-variant d 96.3 0.0017 3.6E-08 47.7 1.4 40 361-401 1-47 (47)
58 PF14835 zf-RING_6: zf-RING of 96.3 0.001 2.2E-08 51.8 -0.1 47 359-409 8-54 (65)
59 PHA02825 LAP/PHD finger-like p 96.3 0.0038 8.3E-08 57.0 3.5 49 356-408 6-61 (162)
60 KOG0297 TNF receptor-associate 96.2 0.0021 4.5E-08 67.3 1.9 55 356-412 19-73 (391)
61 KOG0978 E3 ubiquitin ligase in 96.2 0.0015 3.2E-08 72.1 0.7 49 358-409 643-692 (698)
62 PF11789 zf-Nse: Zinc-finger o 96.2 0.0016 3.4E-08 49.8 0.4 41 358-400 11-53 (57)
63 KOG1814 Predicted E3 ubiquitin 96.1 0.0029 6.3E-08 65.4 2.0 47 359-405 185-239 (445)
64 COG5152 Uncharacterized conser 95.6 0.0054 1.2E-07 57.7 1.5 44 359-405 197-240 (259)
65 KOG2879 Predicted E3 ubiquitin 95.3 0.016 3.4E-07 57.3 3.7 49 356-406 237-287 (298)
66 PF10367 Vps39_2: Vacuolar sor 95.0 0.0083 1.8E-07 50.5 0.6 33 356-389 76-108 (109)
67 PHA03096 p28-like protein; Pro 94.8 0.014 3.1E-07 58.6 1.7 44 359-402 179-230 (284)
68 KOG1952 Transcription factor N 94.6 0.024 5.2E-07 63.4 2.9 51 355-405 188-246 (950)
69 PF14570 zf-RING_4: RING/Ubox 94.5 0.018 3.8E-07 42.5 1.3 44 361-405 1-47 (48)
70 KOG4692 Predicted E3 ubiquitin 94.4 0.024 5.1E-07 57.8 2.2 49 356-407 420-468 (489)
71 KOG2660 Locus-specific chromos 94.3 0.014 3E-07 59.0 0.5 49 358-408 15-63 (331)
72 KOG0826 Predicted E3 ubiquitin 94.3 0.051 1.1E-06 55.0 4.3 49 354-405 296-345 (357)
73 KOG1002 Nucleotide excision re 94.3 0.019 4.1E-07 61.2 1.4 50 357-409 535-589 (791)
74 KOG0827 Predicted E3 ubiquitin 94.2 0.0034 7.4E-08 64.4 -4.2 52 359-410 197-249 (465)
75 PF07800 DUF1644: Protein of u 94.0 0.048 1E-06 49.9 3.2 54 357-413 1-98 (162)
76 KOG1813 Predicted E3 ubiquitin 93.9 0.019 4.2E-07 57.2 0.5 47 359-408 242-288 (313)
77 KOG3039 Uncharacterized conser 93.8 0.067 1.4E-06 52.2 4.0 57 357-413 220-277 (303)
78 KOG1571 Predicted E3 ubiquitin 93.8 0.04 8.7E-07 56.4 2.5 44 357-406 304-347 (355)
79 KOG4739 Uncharacterized protei 93.2 0.03 6.5E-07 54.4 0.5 47 360-409 5-51 (233)
80 PF10272 Tmpp129: Putative tra 92.9 0.072 1.6E-06 55.1 2.9 28 379-406 311-351 (358)
81 KOG1609 Protein involved in mR 92.7 0.096 2.1E-06 52.4 3.4 52 358-409 78-137 (323)
82 KOG1940 Zn-finger protein [Gen 92.3 0.059 1.3E-06 53.8 1.2 47 361-408 161-208 (276)
83 PF04641 Rtf2: Rtf2 RING-finge 92.0 0.14 3E-06 50.7 3.5 54 357-411 112-166 (260)
84 KOG2932 E3 ubiquitin ligase in 91.5 0.076 1.7E-06 53.3 1.0 44 360-407 92-135 (389)
85 KOG3268 Predicted E3 ubiquitin 90.6 0.18 3.8E-06 47.1 2.4 50 360-409 167-231 (234)
86 COG5236 Uncharacterized conser 90.4 0.27 5.7E-06 50.2 3.6 48 356-406 59-108 (493)
87 KOG4275 Predicted E3 ubiquitin 89.9 0.035 7.7E-07 55.3 -2.9 45 357-408 299-344 (350)
88 KOG2114 Vacuolar assembly/sort 89.9 0.16 3.4E-06 57.1 1.7 43 359-406 841-883 (933)
89 PF14447 Prok-RING_4: Prokaryo 89.6 0.25 5.4E-06 37.5 2.1 45 359-408 8-52 (55)
90 KOG1001 Helicase-like transcri 88.7 0.17 3.8E-06 56.6 1.0 49 359-411 455-505 (674)
91 COG5222 Uncharacterized conser 88.5 0.22 4.8E-06 49.8 1.5 52 359-413 275-329 (427)
92 KOG1100 Predicted E3 ubiquitin 88.4 0.29 6.4E-06 47.0 2.2 40 361-407 161-201 (207)
93 PF08746 zf-RING-like: RING-li 88.4 0.17 3.7E-06 36.4 0.5 41 361-401 1-43 (43)
94 KOG4185 Predicted E3 ubiquitin 88.3 0.32 7E-06 48.7 2.6 47 359-405 4-54 (296)
95 KOG2034 Vacuolar sorting prote 87.4 0.25 5.4E-06 55.9 1.2 35 357-392 816-850 (911)
96 KOG3053 Uncharacterized conser 87.3 0.34 7.3E-06 47.7 1.9 51 358-408 20-84 (293)
97 KOG3899 Uncharacterized conser 87.2 0.38 8.2E-06 48.1 2.2 29 379-407 325-366 (381)
98 PF03854 zf-P11: P-11 zinc fin 87.1 0.27 5.8E-06 36.2 0.8 32 376-407 15-47 (50)
99 COG5183 SSM4 Protein involved 86.4 0.5 1.1E-05 53.0 2.8 53 356-409 10-69 (1175)
100 COG5175 MOT2 Transcriptional r 85.8 0.49 1.1E-05 48.2 2.2 53 357-409 13-67 (480)
101 KOG3161 Predicted E3 ubiquitin 85.8 0.22 4.8E-06 54.4 -0.3 48 359-409 12-60 (861)
102 KOG0298 DEAD box-containing he 83.9 0.3 6.5E-06 57.3 -0.3 49 358-408 1153-1201(1394)
103 KOG0802 E3 ubiquitin ligase [P 83.7 0.71 1.5E-05 50.6 2.5 52 354-412 475-526 (543)
104 KOG3002 Zn finger protein [Gen 81.9 0.79 1.7E-05 46.5 1.8 45 356-407 46-92 (299)
105 PF14446 Prok-RING_1: Prokaryo 81.1 1.7 3.6E-05 33.0 2.9 43 358-404 5-50 (54)
106 KOG4362 Transcriptional regula 80.1 0.47 1E-05 52.7 -0.5 52 358-412 21-75 (684)
107 KOG0309 Conserved WD40 repeat- 79.5 1.4 2.9E-05 49.4 2.7 40 360-400 1030-1069(1081)
108 KOG4367 Predicted Zn-finger pr 76.7 1.3 2.7E-05 46.7 1.4 33 357-392 3-35 (699)
109 KOG0825 PHD Zn-finger protein 75.3 1.4 3.1E-05 49.4 1.4 54 358-411 96-159 (1134)
110 COG5524 Bacteriorhodopsin [Gen 68.3 11 0.00023 38.0 5.6 27 226-252 191-217 (285)
111 KOG1829 Uncharacterized conser 68.2 2 4.3E-05 47.3 0.6 42 358-402 511-557 (580)
112 KOG3005 GIY-YIG type nuclease 64.4 3.1 6.6E-05 41.4 1.0 48 358-405 182-242 (276)
113 COG5220 TFB3 Cdk activating ki 63.7 3.8 8.3E-05 40.1 1.5 51 357-407 9-65 (314)
114 KOG1812 Predicted E3 ubiquitin 62.8 3 6.6E-05 43.8 0.7 37 358-394 146-183 (384)
115 KOG3800 Predicted E3 ubiquitin 59.5 6.9 0.00015 39.4 2.5 51 360-410 2-55 (300)
116 PF02891 zf-MIZ: MIZ/SP-RING z 57.4 6.6 0.00014 29.1 1.5 42 360-404 4-50 (50)
117 KOG2817 Predicted E3 ubiquitin 56.5 9.8 0.00021 39.9 3.1 46 359-404 335-383 (394)
118 KOG0269 WD40 repeat-containing 56.4 8.5 0.00018 43.4 2.8 41 359-400 780-820 (839)
119 KOG1815 Predicted E3 ubiquitin 55.6 6 0.00013 42.2 1.5 53 357-411 69-131 (444)
120 PF13901 DUF4206: Domain of un 54.3 6.7 0.00015 37.4 1.4 41 358-403 152-197 (202)
121 KOG2066 Vacuolar assembly/sort 53.3 4.3 9.3E-05 45.8 -0.1 45 357-402 783-831 (846)
122 KOG3039 Uncharacterized conser 51.0 15 0.00032 36.3 3.1 32 358-392 43-74 (303)
123 KOG1812 Predicted E3 ubiquitin 45.1 10 0.00022 39.9 1.1 47 359-405 307-355 (384)
124 PF05290 Baculo_IE-1: Baculovi 44.8 18 0.00038 32.5 2.4 52 358-409 80-135 (140)
125 KOG2068 MOT2 transcription fac 43.9 18 0.00038 37.2 2.6 52 359-411 250-303 (327)
126 PF10856 DUF2678: Protein of u 43.5 23 0.0005 31.0 2.9 32 130-162 52-84 (118)
127 PF05715 zf-piccolo: Piccolo Z 43.1 16 0.00035 28.2 1.6 20 395-414 2-21 (61)
128 smart00132 LIM Zinc-binding do 43.0 20 0.00043 23.6 2.0 37 361-406 2-38 (39)
129 KOG3842 Adaptor protein Pellin 42.8 23 0.0005 36.2 3.1 51 357-407 340-415 (429)
130 smart00249 PHD PHD zinc finger 41.2 12 0.00026 25.7 0.6 30 361-390 2-31 (47)
131 PF06844 DUF1244: Protein of u 38.1 19 0.0004 28.5 1.3 12 382-393 11-22 (68)
132 KOG4718 Non-SMC (structural ma 35.0 16 0.00034 35.4 0.6 42 358-401 181-222 (235)
133 PF06937 EURL: EURL protein; 34.7 44 0.00095 33.5 3.6 24 383-408 57-81 (285)
134 PF14169 YdjO: Cold-inducible 34.3 20 0.00044 27.7 1.0 15 395-409 39-53 (59)
135 KOG3113 Uncharacterized conser 34.1 31 0.00067 34.3 2.4 58 358-417 111-169 (293)
136 PF07975 C1_4: TFIIH C1-like d 33.1 24 0.00052 26.5 1.2 41 361-402 2-50 (51)
137 PF06638 Strabismus: Strabismu 32.5 7.1E+02 0.015 27.3 12.8 25 104-128 90-114 (505)
138 COG0598 CorA Mg2+ and Co2+ tra 31.8 75 0.0016 32.3 5.0 54 217-270 254-307 (322)
139 KOG1729 FYVE finger containing 31.8 8.7 0.00019 38.8 -1.8 37 360-396 216-252 (288)
140 KOG2927 Membrane component of 29.6 41 0.00088 35.0 2.5 29 136-165 186-214 (372)
141 PF04710 Pellino: Pellino; In 29.2 18 0.00039 38.0 0.0 50 358-407 328-402 (416)
142 PHA02898 virion envelope prote 29.1 45 0.00097 27.8 2.2 39 127-165 32-73 (92)
143 PF04423 Rad50_zn_hook: Rad50 28.7 16 0.00034 27.2 -0.5 14 395-408 20-33 (54)
144 KOG2927 Membrane component of 28.3 58 0.0013 33.9 3.4 6 260-265 218-223 (372)
145 PF06906 DUF1272: Protein of u 28.3 93 0.002 23.9 3.6 46 361-408 8-54 (57)
146 PRK05978 hypothetical protein; 27.4 40 0.00086 30.9 1.8 26 380-410 42-67 (148)
147 KOG3799 Rab3 effector RIM1 and 27.2 15 0.00033 33.0 -0.8 49 356-404 63-116 (169)
148 KOG2041 WD40 repeat protein [G 27.0 33 0.00071 38.9 1.5 48 355-406 1128-1185(1189)
149 PF04710 Pellino: Pellino; In 25.4 23 0.00051 37.2 0.0 30 372-404 302-337 (416)
150 KOG3579 Predicted E3 ubiquitin 25.3 62 0.0013 32.8 2.9 37 356-395 266-306 (352)
151 PRK11827 hypothetical protein; 24.6 25 0.00054 27.3 0.0 20 389-408 2-21 (60)
152 COG4700 Uncharacterized protei 22.9 76 0.0016 30.7 2.9 28 229-269 9-36 (251)
153 PF15444 TMEM247: Transmembran 22.8 1.2E+02 0.0026 28.8 4.0 16 226-241 171-186 (218)
154 TIGR00622 ssl1 transcription f 22.2 79 0.0017 27.6 2.6 44 359-402 56-110 (112)
155 PF09788 Tmemb_55A: Transmembr 21.8 1.1E+02 0.0023 30.5 3.8 53 106-158 196-250 (256)
156 PF11712 Vma12: Endoplasmic re 21.6 1.8E+02 0.0039 26.0 5.0 26 221-246 79-104 (142)
157 COG4847 Uncharacterized protei 21.2 91 0.002 26.5 2.7 35 358-393 6-40 (103)
158 KOG2807 RNA polymerase II tran 21.2 90 0.0019 32.2 3.1 45 359-403 331-375 (378)
159 KOG2169 Zn-finger transcriptio 20.4 49 0.0011 37.2 1.3 45 359-410 307-360 (636)
160 PF00628 PHD: PHD-finger; Int 20.0 31 0.00066 24.8 -0.3 43 361-403 2-50 (51)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-19 Score=182.73 Aligned_cols=95 Identities=28% Similarity=0.643 Sum_probs=77.3
Q ss_pred hhhhcccHhhhhcCCceeeeecccCCCCCCCCCCCCCCCCcccccccccccccCCCceeeeecccccCCCcceEeccCCc
Q 013215 303 AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHF 382 (447)
Q Consensus 303 ~~~rgas~~~I~~LP~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~ 382 (447)
.+.+++.++.++++|.++|+.....+. ...|+|||++|++||++|.|||+|.
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~----------------------------~~~CaIClEdY~~GdklRiLPC~H~ 253 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDA----------------------------TDTCAICLEDYEKGDKLRILPCSHK 253 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCC----------------------------CceEEEeecccccCCeeeEecCCCc
Confidence 355688999999999999987432211 1369999999999999999999999
Q ss_pred ccHHHHHHHHhcCCC-CCccccccCCCCCCCCCccccccccCCC
Q 013215 383 FHKDCVDKWLKINAS-CPLCKSEVGDTVLGSISGANARILGSIS 425 (447)
Q Consensus 383 FH~~CId~WL~~~~t-CPlCR~~I~~~~~~~~~~~~~~~~~~~~ 425 (447)
||..|||+||..+.+ ||+||+++.+....+...+..+.+...+
T Consensus 254 FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~tp~~~~~~ 297 (348)
T KOG4628|consen 254 FHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDTPLLSQGP 297 (348)
T ss_pred hhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCCccccCCC
Confidence 999999999987755 9999999999988877666555444444
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.51 E-value=4e-15 Score=107.48 Aligned_cols=43 Identities=44% Similarity=1.252 Sum_probs=40.7
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccc
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCK 402 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 402 (447)
+|+||+++|.+++.+..|+|+|.||.+||.+|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999999999999999999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3e-13 Score=135.20 Aligned_cols=53 Identities=30% Similarity=0.901 Sum_probs=44.8
Q ss_pred cCCCceeeeeccc-ccCCC---------cceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215 355 SGEDAVCCICLAK-YANND---------ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 355 s~ed~~C~ICL~~-y~~~d---------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
..+|..|.||+++ |+.+. .-++|||+|+||.+|++.|+++++|||+||.++.-
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 3457889999999 55442 34789999999999999999999999999999443
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.9e-13 Score=128.64 Aligned_cols=50 Identities=44% Similarity=1.101 Sum_probs=46.5
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCccccccCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGD 407 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 407 (447)
..+|+|||++|-.+|+++.|||+|.||..||++|+. -+..||+||.+|.+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 467999999999999999999999999999999997 68889999999865
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.26 E-value=2.6e-12 Score=102.98 Aligned_cols=45 Identities=40% Similarity=0.974 Sum_probs=36.5
Q ss_pred CceeeeecccccCC----------CcceEeccCCcccHHHHHHHHhcCCCCCccc
Q 013215 358 DAVCCICLAKYANN----------DELRELPCSHFFHKDCVDKWLKINASCPLCK 402 (447)
Q Consensus 358 d~~C~ICL~~y~~~----------d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 402 (447)
+..|+||++.|.+. -.+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34599999999432 2456678999999999999999999999998
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.25 E-value=3.4e-12 Score=123.73 Aligned_cols=77 Identities=23% Similarity=0.582 Sum_probs=56.5
Q ss_pred hhhcccHhhhhcCCceeeeecccCCCCCCCCCCCCCCCCcccccccccccccCCCceeeeecccccCCCc----ceEe-c
Q 013215 304 QTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDE----LREL-P 378 (447)
Q Consensus 304 ~~rgas~~~I~~LP~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~ed~~C~ICL~~y~~~d~----lr~L-P 378 (447)
..++..+..++.+|....+...... ..++.+|+||++.+.+++. +..+ +
T Consensus 146 ~k~~~~~~~i~~lp~vl~~~e~~~~--------------------------~~~~~eC~ICle~~~~~~~~~~~~~vl~~ 199 (238)
T PHA02929 146 KKGKNYKKFLKTIPSVLSEYEKLYN--------------------------RSKDKECAICMEKVYDKEIKNMYFGILSN 199 (238)
T ss_pred HhcchhHHHHHhcchhhhhhhhhhc--------------------------CCCCCCCccCCcccccCccccccceecCC
Confidence 4456688888888887554321100 1235679999999876541 2344 5
Q ss_pred cCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 379 CSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 379 C~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
|+|.||.+||.+|++.+.+||+||.++.
T Consensus 200 C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 200 CNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 9999999999999999999999999875
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.7e-10 Score=112.91 Aligned_cols=56 Identities=29% Similarity=0.715 Sum_probs=48.9
Q ss_pred cccccCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 351 ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 351 e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
+..+...+.+|.|||+..+++ ..+||||+||+.||..|+..+..||+||....+..
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 334555678899999998888 89999999999999999999999999999987764
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.01 E-value=2.7e-10 Score=106.62 Aligned_cols=59 Identities=37% Similarity=0.750 Sum_probs=48.1
Q ss_pred ccCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----------------CCCCCccccccCCCCCCCCCc
Q 013215 354 ISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----------------NASCPLCKSEVGDTVLGSISG 415 (447)
Q Consensus 354 ~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----------------~~tCPlCR~~I~~~~~~~~~~ 415 (447)
..+++.+|.||++.+.++ ..++|+|.||+.||.+|+.. ..+||+||.+|......+..+
T Consensus 14 ~~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 345678899999999877 67899999999999999852 357999999998876655444
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-09 Score=104.52 Aligned_cols=57 Identities=32% Similarity=0.667 Sum_probs=49.0
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc---CCCCCccccccCCCCCCCCCc
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI---NASCPLCKSEVGDTVLGSISG 415 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~~~~~~~~ 415 (447)
....+|.|||+.-+++ .+..|+|+||+-||.+||+. +..||+||..|..++..+.++
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 4567899999998887 77889999999999999976 455899999999988877666
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.91 E-value=8e-10 Score=78.10 Aligned_cols=44 Identities=43% Similarity=1.179 Sum_probs=37.0
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCcccccc
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEV 405 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I 405 (447)
+|+||++.+ .+.+..++|+|.||..|++.|++. +..||+||.++
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 334555669999999999999987 78899999764
No 11
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.1e-10 Score=120.59 Aligned_cols=64 Identities=33% Similarity=0.819 Sum_probs=53.6
Q ss_pred ccccCCCceeeeecccccCCCc--ceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCCCCc
Q 013215 352 RVISGEDAVCCICLAKYANNDE--LRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISG 415 (447)
Q Consensus 352 ~~~s~ed~~C~ICL~~y~~~d~--lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~~~ 415 (447)
+.....+..|+||++++..+.. .++|||+|+||..|+.+|++++++||+||..+......+..+
T Consensus 285 ~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~~~~~~ 350 (543)
T KOG0802|consen 285 RGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVLWQIAA 350 (543)
T ss_pred hhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccccccccC
Confidence 3344568889999999998765 789999999999999999999999999999777766544433
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.90 E-value=4.5e-10 Score=83.26 Aligned_cols=47 Identities=32% Similarity=0.895 Sum_probs=40.1
Q ss_pred CceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
+..|.||++...+ +..+||+|. |+..|+.+|++.+.+||+||++|.+
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 5679999998655 589999999 9999999999999999999999853
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.86 E-value=1.9e-09 Score=88.20 Aligned_cols=50 Identities=38% Similarity=0.834 Sum_probs=39.3
Q ss_pred CCceeeeeccccc--------CCC--cceEeccCCcccHHHHHHHHhc---CCCCCccccccC
Q 013215 357 EDAVCCICLAKYA--------NND--ELRELPCSHFFHKDCVDKWLKI---NASCPLCKSEVG 406 (447)
Q Consensus 357 ed~~C~ICL~~y~--------~~d--~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~ 406 (447)
+|+.|.||...|+ .|+ .+..-.|+|.||..||.+||.. +.+||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3677999999997 223 3434459999999999999964 678999998753
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.78 E-value=2.5e-09 Score=75.20 Aligned_cols=39 Identities=41% Similarity=1.068 Sum_probs=33.9
Q ss_pred eeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcc
Q 013215 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLC 401 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlC 401 (447)
|.||++.+.+ .+..++|+|.|+.+||.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8899999888 46789999999999999999999999998
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.71 E-value=6.5e-09 Score=98.68 Aligned_cols=51 Identities=24% Similarity=0.741 Sum_probs=38.4
Q ss_pred CCCceeeeecccccCC-----CcceEe-ccCCcccHHHHHHHHhcC------CCCCccccccC
Q 013215 356 GEDAVCCICLAKYANN-----DELREL-PCSHFFHKDCVDKWLKIN------ASCPLCKSEVG 406 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~-----d~lr~L-PC~H~FH~~CId~WL~~~------~tCPlCR~~I~ 406 (447)
.++.+|+|||+..-+. .....| +|+|.||..||++|.+.+ .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3467899999886332 123455 499999999999999753 45999998765
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.62 E-value=2.5e-08 Score=67.88 Aligned_cols=38 Identities=47% Similarity=1.157 Sum_probs=33.1
Q ss_pred eeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCcc
Q 013215 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLC 401 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlC 401 (447)
|.||++. ......++|+|.||..|++.|++ .+.+||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899888 34568999999999999999998 67789998
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.58 E-value=3e-08 Score=71.66 Aligned_cols=44 Identities=32% Similarity=0.852 Sum_probs=39.5
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcccc
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKS 403 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 403 (447)
.|.||+++|.+....+.++|+|.|+..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 39999999976677899999999999999999977888999985
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.57 E-value=2e-08 Score=71.01 Aligned_cols=39 Identities=46% Similarity=1.128 Sum_probs=34.9
Q ss_pred eeeecccccCCCcceEeccCCcccHHHHHHHHh--cCCCCCcc
Q 013215 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLK--INASCPLC 401 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~--~~~tCPlC 401 (447)
|.||++.+.++. ..++|+|.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 889999988873 6899999999999999998 56779998
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.56 E-value=4.8e-08 Score=75.14 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=42.6
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
..|+||++-+.++ ..+||+|.|.+.||.+|++.+.+||+|+.++....
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 4599999999987 67899999999999999998999999999885543
No 20
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.5e-08 Score=98.23 Aligned_cols=53 Identities=30% Similarity=0.735 Sum_probs=45.2
Q ss_pred CCceeeeecccccCCC-------cceEeccCCcccHHHHHHHH--hcCCCCCccccccCCCC
Q 013215 357 EDAVCCICLAKYANND-------ELRELPCSHFFHKDCVDKWL--KINASCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d-------~lr~LPC~H~FH~~CId~WL--~~~~tCPlCR~~I~~~~ 409 (447)
+|..|+||=..+...+ ...+|.|+|+||..||+.|. -+++|||-||..+.-+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 4678999998887655 68899999999999999996 56899999999886553
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.4e-08 Score=90.75 Aligned_cols=50 Identities=26% Similarity=0.628 Sum_probs=43.1
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
+.|+|||+.|..... .-..|||+||++||+.-++....||+|++.|.+..
T Consensus 132 ~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 679999999987643 24669999999999999999999999999887653
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.45 E-value=8.5e-08 Score=68.77 Aligned_cols=38 Identities=39% Similarity=0.963 Sum_probs=30.4
Q ss_pred eeeecccccCCCcceEeccCCcccHHHHHHHHhcC----CCCCcc
Q 013215 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN----ASCPLC 401 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~----~tCPlC 401 (447)
|+||++-|.++ ..|+|+|.|+..||.+|.+.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 889999999999999999653 469998
No 23
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.5e-08 Score=77.37 Aligned_cols=48 Identities=35% Similarity=0.843 Sum_probs=36.2
Q ss_pred Cceeeeeccccc--------CCCc--ceEeccCCcccHHHHHHHHhc---CCCCCcccccc
Q 013215 358 DAVCCICLAKYA--------NNDE--LRELPCSHFFHKDCVDKWLKI---NASCPLCKSEV 405 (447)
Q Consensus 358 d~~C~ICL~~y~--------~~d~--lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I 405 (447)
+.+|-||...|. .||. +..=-|.|.||..||.+|+.. +..||+||++.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 347999999997 3332 211239999999999999954 56799999875
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.44 E-value=1.4e-07 Score=75.72 Aligned_cols=40 Identities=30% Similarity=0.664 Sum_probs=31.5
Q ss_pred ccCCCcceEe--ccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215 368 YANNDELREL--PCSHFFHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 368 y~~~d~lr~L--PC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
...+++.... -|+|.||..||.+||..+..||+||++..-
T Consensus 41 ~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 41 MTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred CCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 3355544333 399999999999999999999999987543
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4.9e-07 Score=94.02 Aligned_cols=49 Identities=27% Similarity=0.821 Sum_probs=39.3
Q ss_pred ceeeeecccccC---CC-----------cceEeccCCcccHHHHHHHHh-cCCCCCccccccCC
Q 013215 359 AVCCICLAKYAN---ND-----------ELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGD 407 (447)
Q Consensus 359 ~~C~ICL~~y~~---~d-----------~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 407 (447)
..|+|||.+..- +. .....||+|+||..|+..|.. .+-.||.||.++.+
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 459999988751 11 144669999999999999998 67799999998854
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=1.2e-07 Score=98.30 Aligned_cols=49 Identities=29% Similarity=0.634 Sum_probs=43.8
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
....|.||++.|.+. ..+||+|.||..||..|+.....||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 456799999999877 4789999999999999999888999999998865
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.39 E-value=1.9e-07 Score=69.25 Aligned_cols=42 Identities=29% Similarity=0.975 Sum_probs=33.6
Q ss_pred eeeeecccccCCCcceEeccC-----CcccHHHHHHHHhc--CCCCCccc
Q 013215 360 VCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKI--NASCPLCK 402 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR 402 (447)
.|-||++ +.+++....+||. |+||..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899999 4445555689985 99999999999944 55899995
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.6e-07 Score=88.85 Aligned_cols=52 Identities=31% Similarity=0.671 Sum_probs=45.0
Q ss_pred cCCCceeeeecccccCCCcceEeccCCcccHHHHHH-HHhcCCC-CCccccccCCCC
Q 013215 355 SGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDK-WLKINAS-CPLCKSEVGDTV 409 (447)
Q Consensus 355 s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~-WL~~~~t-CPlCR~~I~~~~ 409 (447)
...|.+|.||++..+.. ..+||+|+|+..||-. |-+++.. ||+||+.+..+.
T Consensus 212 p~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 212 PLADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 34588999999988877 7899999999999999 9888777 999999887653
No 29
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.18 E-value=3.9e-07 Score=100.46 Aligned_cols=49 Identities=39% Similarity=0.944 Sum_probs=38.1
Q ss_pred CCCceeeeecccccCCCcceEec------cCCcccHHHHHHHHhc--CCCCCccccccC
Q 013215 356 GEDAVCCICLAKYANNDELRELP------CSHFFHKDCVDKWLKI--NASCPLCKSEVG 406 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LP------C~H~FH~~CId~WL~~--~~tCPlCR~~I~ 406 (447)
....+|+||..-...-| |.|| |+|.||..|+.+|++. +.+||+||.+|.
T Consensus 1467 sG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 44678999988765211 4444 7899999999999976 678999998764
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.03 E-value=2.2e-06 Score=61.82 Aligned_cols=38 Identities=39% Similarity=0.898 Sum_probs=22.7
Q ss_pred eeeecccccCCC-cceEeccCCcccHHHHHHHHhcC----CCCC
Q 013215 361 CCICLAKYANND-ELRELPCSHFFHKDCVDKWLKIN----ASCP 399 (447)
Q Consensus 361 C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~----~tCP 399 (447)
|+||.+ |.+.+ .-+.|||+|.|.++||+++++.+ .+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86644 45789999999999999999743 3577
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.97 E-value=3.1e-06 Score=67.72 Aligned_cols=51 Identities=18% Similarity=0.494 Sum_probs=40.8
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVL 410 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~ 410 (447)
+...|+||.+-|.++ ..+||+|.|-+.||.+||+. +.+||+|+.++.....
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 456799999999999 78999999999999999988 8999999998877543
No 32
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.1e-06 Score=71.23 Aligned_cols=26 Identities=46% Similarity=1.129 Sum_probs=25.0
Q ss_pred cCCcccHHHHHHHHhcCCCCCccccc
Q 013215 379 CSHFFHKDCVDKWLKINASCPLCKSE 404 (447)
Q Consensus 379 C~H~FH~~CId~WL~~~~tCPlCR~~ 404 (447)
|+|-||..||.+||+.+..||||.++
T Consensus 81 CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 81 CNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred cchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 99999999999999999999999876
No 33
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.95 E-value=2.8e-06 Score=92.46 Aligned_cols=54 Identities=26% Similarity=0.626 Sum_probs=48.4
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLG 411 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~ 411 (447)
...|.+||..+.++......+|.|+||..||+.|-+.-.|||+||.++.+....
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 356999999999998888889999999999999999999999999998876443
No 34
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=8e-06 Score=83.11 Aligned_cols=49 Identities=35% Similarity=0.919 Sum_probs=38.3
Q ss_pred CceeeeecccccCCCcceEec-cCCcccHHHHHHHHhc---CCCCCccccccC
Q 013215 358 DAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKI---NASCPLCKSEVG 406 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR~~I~ 406 (447)
.++|.||.+-+....++..+- |+|+||..|+.+|+.. +.+||.||-.+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 467999955555555777777 9999999999999965 468999994433
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=9.9e-06 Score=81.32 Aligned_cols=52 Identities=29% Similarity=0.592 Sum_probs=40.2
Q ss_pred Cceeeeeccc-ccCCC-cceEeccCCcccHHHHHHHH-hcCCCCCccccccCCCC
Q 013215 358 DAVCCICLAK-YANND-ELRELPCSHFFHKDCVDKWL-KINASCPLCKSEVGDTV 409 (447)
Q Consensus 358 d~~C~ICL~~-y~~~d-~lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~ 409 (447)
+..|+||..+ |-.++ .+..-+|+|.||..||+..+ .....||.|+.++.+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 5679999986 54444 33344899999999999965 55668999999988765
No 36
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=9.5e-06 Score=85.39 Aligned_cols=51 Identities=29% Similarity=0.615 Sum_probs=40.9
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-----CCCCCccccccCCCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-----NASCPLCKSEVGDTVLG 411 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-----~~tCPlCR~~I~~~~~~ 411 (447)
+..|+|||+....+ ..+.|||+||..||-+.+.. -..||+|+..|.....-
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 78899999987776 34449999999999998754 35699999999885443
No 37
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.79 E-value=7.6e-06 Score=80.82 Aligned_cols=51 Identities=27% Similarity=0.778 Sum_probs=44.2
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHh-----------------------cCCCCCccccccCCCCC
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-----------------------INASCPLCKSEVGDTVL 410 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~I~~~~~ 410 (447)
.|.|||-.|.+++...+++|.|+||..|+.+.|. ....||+||..|.....
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 4999999999999999999999999999988772 13459999999987654
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=8.3e-06 Score=78.70 Aligned_cols=45 Identities=33% Similarity=0.803 Sum_probs=40.6
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcccc
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKS 403 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 403 (447)
.+...|.||++.|.++ +.|||+|.|+..||..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3567899999999999 89999999999999999986677999994
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.75 E-value=5.1e-06 Score=66.11 Aligned_cols=49 Identities=27% Similarity=0.711 Sum_probs=23.7
Q ss_pred ceeeeecccccCCCcceEe-----ccCCcccHHHHHHHHhc-----------CCCCCccccccCC
Q 013215 359 AVCCICLAKYANNDELREL-----PCSHFFHKDCVDKWLKI-----------NASCPLCKSEVGD 407 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~L-----PC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~~ 407 (447)
.+|.||.+.+.+++++-.+ .|++.||..||.+||.. ..+||.|+.+|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4699999987634322222 37899999999999942 1249999998753
No 40
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.69 E-value=1.2e-05 Score=80.58 Aligned_cols=49 Identities=33% Similarity=0.699 Sum_probs=44.5
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL 410 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 410 (447)
..|-||.+=|..+ ..+||+|-||.-||++.|..+..||+|+.++.+...
T Consensus 24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 4599999999888 899999999999999999999999999999887543
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=3.6e-05 Score=77.99 Aligned_cols=50 Identities=24% Similarity=0.697 Sum_probs=41.4
Q ss_pred CCCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
+...+|.|||.+-.+- ..|||.|+ .|..|.+.---+.+.||+||++|...
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 4467899999987764 89999998 78999888655677899999998764
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.68 E-value=1.3e-05 Score=82.89 Aligned_cols=49 Identities=31% Similarity=0.802 Sum_probs=39.6
Q ss_pred CCCceeeeecccccCCC-cceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 356 GEDAVCCICLAKYANND-ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
-|-.+|++||+.+.... -++...|+|-||..|+.+|- ..+||+||.-..
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 34567999999997654 35666699999999999996 467999998765
No 43
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=2.9e-05 Score=76.92 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=44.3
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCCCCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVLGSIS 414 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~~~~~ 414 (447)
+.+|.||+.+..-+ ..|+|+|.|+..||+-=.+. +.+||+||.+|.+.-.-.+.
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~ps 61 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPS 61 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchh
Confidence 46799999887766 78999999999999987765 55699999999887554443
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.48 E-value=5.1e-05 Score=74.75 Aligned_cols=47 Identities=26% Similarity=0.641 Sum_probs=42.3
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
..|-||-+-|..+ ...+|+|-||.-||..-|..+.-||+||.+..+.
T Consensus 26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 4599999998887 7889999999999999999999999999987654
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=8e-05 Score=76.47 Aligned_cols=50 Identities=34% Similarity=0.947 Sum_probs=38.9
Q ss_pred ceeeeecccccCCCc--ceEeccCCcccHHHHHHHHh--cCCCCCccccccCCC
Q 013215 359 AVCCICLAKYANNDE--LRELPCSHFFHKDCVDKWLK--INASCPLCKSEVGDT 408 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~--lr~LPC~H~FH~~CId~WL~--~~~tCPlCR~~I~~~ 408 (447)
..|+|||+.|+..-+ +..|-|+|.|-.+||++||. ....||+|+.+-.+.
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR 58 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH
Confidence 469999999986543 44455999999999999994 245699998765543
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=8.9e-05 Score=75.87 Aligned_cols=52 Identities=29% Similarity=0.770 Sum_probs=39.9
Q ss_pred CCCceeeeecccccCCC----cceEec-cCCcccHHHHHHHH--hc-----CCCCCccccccCC
Q 013215 356 GEDAVCCICLAKYANND----ELRELP-CSHFFHKDCVDKWL--KI-----NASCPLCKSEVGD 407 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d----~lr~LP-C~H~FH~~CId~WL--~~-----~~tCPlCR~~I~~ 407 (447)
..+.+|.||++...+.. ....|| |+|.|+..||++|- ++ ...||.||....-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45778999999876543 133456 99999999999998 33 5679999977544
No 47
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.15 E-value=0.00029 Score=80.87 Aligned_cols=59 Identities=31% Similarity=0.705 Sum_probs=47.9
Q ss_pred cccccCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC----------CCCCccccccCCCC
Q 013215 351 ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN----------ASCPLCKSEVGDTV 409 (447)
Q Consensus 351 e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~----------~tCPlCR~~I~~~~ 409 (447)
+......|+.|-||+-+--......+|-|+|+||..|.+.-|.+. -.||+|+.+|....
T Consensus 3479 s~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3479 SATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred hhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 334556688999999888777888999999999999998877542 35999999997754
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00013 Score=54.78 Aligned_cols=47 Identities=21% Similarity=0.610 Sum_probs=33.6
Q ss_pred CceeeeecccccCCCcceEeccCCc-ccHHHH-HHHHhcCCCCCccccccCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHF-FHKDCV-DKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CI-d~WL~~~~tCPlCR~~I~~ 407 (447)
+++|.||++.-.+. ..--|+|+ .+.+|- +.|-..+.+||+||++|.+
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 46899997764443 34449998 567774 4454579999999998753
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=9.8e-05 Score=74.69 Aligned_cols=50 Identities=30% Similarity=0.623 Sum_probs=41.5
Q ss_pred CceeeeecccccCCCcceEec-cCCcccHHHHHHHHhc-CCCCCccccccCCCCC
Q 013215 358 DAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVL 410 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~ 410 (447)
+..|.|||+=+..- +..+ |.|.||.+||.+=++. +++||.||+.+...-.
T Consensus 43 ~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 43 QVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred hhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 46799999887765 5556 9999999999999865 8899999999876543
No 50
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.81 E-value=0.00036 Score=71.38 Aligned_cols=48 Identities=38% Similarity=0.834 Sum_probs=39.4
Q ss_pred CceeeeecccccC-CCcceEeccCCcccHHHHHHHHhcCC--CCCcccccc
Q 013215 358 DAVCCICLAKYAN-NDELRELPCSHFFHKDCVDKWLKINA--SCPLCKSEV 405 (447)
Q Consensus 358 d~~C~ICL~~y~~-~d~lr~LPC~H~FH~~CId~WL~~~~--tCPlCR~~I 405 (447)
+.-|-.|=+.|.- ++.+-.|||.|+||..|+...|.++. +||.||+-+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3459999998864 45688999999999999999997764 599999433
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00059 Score=71.23 Aligned_cols=50 Identities=30% Similarity=0.767 Sum_probs=44.5
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
..+.+|+||+.-+.++ ..+||+|-|+..||++-+..+..||+||.++.+-
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccccc
Confidence 4567899999998888 6779999999999999889899999999999873
No 52
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.75 E-value=0.00066 Score=60.37 Aligned_cols=36 Identities=28% Similarity=0.672 Sum_probs=31.3
Q ss_pred CceeeeecccccCCCcceEeccC------CcccHHHHHHHHh
Q 013215 358 DAVCCICLAKYANNDELRELPCS------HFFHKDCVDKWLK 393 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~------H~FH~~CId~WL~ 393 (447)
..+|+||++.+.+++-+..++|+ |+||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 35799999999996678889986 9999999999943
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.50 E-value=0.0016 Score=66.96 Aligned_cols=50 Identities=26% Similarity=0.803 Sum_probs=41.2
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--CCCCCccccccCCCCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--NASCPLCKSEVGDTVLG 411 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~~~~~ 411 (447)
..|-||-+. +..++.=||+|+.|..|+..|-.. .++||.||.+|......
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 349999764 445789999999999999999843 68999999999887643
No 54
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0021 Score=61.54 Aligned_cols=52 Identities=27% Similarity=0.626 Sum_probs=42.3
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--------CCCCCccccccCCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--------NASCPLCKSEVGDTVL 410 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~~I~~~~~ 410 (447)
+.-|..|--.++.+|.+ .|.|-|+||++|++.|-.. .-.||-|..+|.+...
T Consensus 50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 34599999999988765 5679999999999999743 3459999999987643
No 55
>PHA02862 5L protein; Provisional
Probab=96.49 E-value=0.0021 Score=57.66 Aligned_cols=45 Identities=24% Similarity=0.685 Sum_probs=35.0
Q ss_pred ceeeeecccccCCCcceEeccC-----CcccHHHHHHHHhc--CCCCCccccccCC
Q 013215 359 AVCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKI--NASCPLCKSEVGD 407 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR~~I~~ 407 (447)
+.|=||.++-+++ .-||. -.-|.+|+.+|++. +.+||+||.+..-
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 5699999985433 46864 67899999999954 6679999988753
No 56
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0012 Score=60.33 Aligned_cols=33 Identities=33% Similarity=0.828 Sum_probs=29.0
Q ss_pred cccCCCceeeeecccccCCCcceEeccCCcccH
Q 013215 353 VISGEDAVCCICLAKYANNDELRELPCSHFFHK 385 (447)
Q Consensus 353 ~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~ 385 (447)
++..+.-||.|||++++.++.+..|||-.+||+
T Consensus 172 VL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 172 VLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 455556679999999999999999999999997
No 57
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.35 E-value=0.0017 Score=47.72 Aligned_cols=40 Identities=30% Similarity=0.982 Sum_probs=27.9
Q ss_pred eeeecccccCCCcceEeccC-----CcccHHHHHHHHh--cCCCCCcc
Q 013215 361 CCICLAKYANNDELRELPCS-----HFFHKDCVDKWLK--INASCPLC 401 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~--~~~tCPlC 401 (447)
|-||+++-.+.+ .-..||+ -+.|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998877665 3467864 4889999999996 46779988
No 58
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.27 E-value=0.001 Score=51.83 Aligned_cols=47 Identities=21% Similarity=0.561 Sum_probs=23.5
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
..|.+|.+-+..+ +..-.|.|.|+..||..-+. ..||+|+.+.-.+.
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 3499999887776 45566999999999988443 45999998876543
No 59
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.27 E-value=0.0038 Score=56.99 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=36.0
Q ss_pred CCCceeeeecccccCCCcceEeccC--C---cccHHHHHHHHhc--CCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCS--H---FFHKDCVDKWLKI--NASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~--H---~FH~~CId~WL~~--~~tCPlCR~~I~~~ 408 (447)
..+.+|=||.++..+ . .-||. . .-|.+|+.+|+.. +.+|++|+++..-.
T Consensus 6 ~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 346779999988532 2 35864 3 6699999999954 56799999886543
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.23 E-value=0.0021 Score=67.35 Aligned_cols=55 Identities=24% Similarity=0.564 Sum_probs=45.5
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGS 412 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~ 412 (447)
.++..|+||...+.++-. ...|+|.|+..|+.+|+..+..||.|+..+.....-.
T Consensus 19 ~~~l~C~~C~~vl~~p~~--~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQ--TTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCC--CCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 356789999999998832 2579999999999999999999999988877655443
No 61
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0015 Score=72.12 Aligned_cols=49 Identities=22% Similarity=0.639 Sum_probs=38.7
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCccccccCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGDTV 409 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~ 409 (447)
-..|+.|-..+.+- ....|+|+||..||.+-+. +...||.|-..++...
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 35699998776663 4555999999999999994 5778999988776543
No 62
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.17 E-value=0.0016 Score=49.84 Aligned_cols=41 Identities=22% Similarity=0.638 Sum_probs=28.9
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--CCCCCc
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--NASCPL 400 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPl 400 (447)
...|+|.+..|+++ ++-..|+|.|-++.|.+||+. ...||.
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45699999999877 666789999999999999943 556998
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0029 Score=65.41 Aligned_cols=47 Identities=34% Similarity=0.775 Sum_probs=38.9
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--------CCCCCcccccc
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--------NASCPLCKSEV 405 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~~I 405 (447)
..|+||+++....+....|||+|+|++.|+...+.+ .-.||-|+-.=
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 459999999887789999999999999999999854 23488776543
No 64
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.59 E-value=0.0054 Score=57.75 Aligned_cols=44 Identities=23% Similarity=0.534 Sum_probs=39.0
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcccccc
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I 405 (447)
..|-||-.+|+.+ ....|+|+||..|..+=++...+|-+|-+..
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 3799999999998 6778999999999999899999999996543
No 65
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.016 Score=57.25 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=38.1
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--CCCCCccccccC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--NASCPLCKSEVG 406 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~ 406 (447)
..+.+|++|-+.=..+ ....+|+|+||..||.+=+.- ..+||.|-.++.
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4577899997764443 566779999999999987643 579999977765
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.99 E-value=0.0083 Score=50.52 Aligned_cols=33 Identities=27% Similarity=0.716 Sum_probs=28.0
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHH
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVD 389 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId 389 (447)
.++..|++|-..+.. ......||+|+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 345669999999977 578889999999999975
No 67
>PHA03096 p28-like protein; Provisional
Probab=94.77 E-value=0.014 Score=58.59 Aligned_cols=44 Identities=23% Similarity=0.497 Sum_probs=32.2
Q ss_pred ceeeeecccccCC----CcceEec-cCCcccHHHHHHHHhc---CCCCCccc
Q 013215 359 AVCCICLAKYANN----DELRELP-CSHFFHKDCVDKWLKI---NASCPLCK 402 (447)
Q Consensus 359 ~~C~ICL~~y~~~----d~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR 402 (447)
.+|.|||+..... .....|+ |+|.|+..||..|-.. +.+||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 6799999886543 2455788 9999999999999843 33444443
No 68
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.55 E-value=0.024 Score=63.37 Aligned_cols=51 Identities=29% Similarity=0.738 Sum_probs=36.7
Q ss_pred cCCCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhc-------CCCCCcccccc
Q 013215 355 SGEDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKI-------NASCPLCKSEV 405 (447)
Q Consensus 355 s~ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~-------~~tCPlCR~~I 405 (447)
+.+-.+|.||.+.+..-+.+=-= .|-|+||..||.+|-+. .=.||-|+...
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 34457899999998766543222 27899999999999854 22499998433
No 69
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.55 E-value=0.018 Score=42.55 Aligned_cols=44 Identities=20% Similarity=0.563 Sum_probs=21.5
Q ss_pred eeeecccccCCCcceEec--cCCcccHHHHHHHHh-cCCCCCcccccc
Q 013215 361 CCICLAKYANNDELRELP--CSHFFHKDCVDKWLK-INASCPLCKSEV 405 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LP--C~H~FH~~CId~WL~-~~~tCPlCR~~I 405 (447)
|++|.+++ +......+| |++..+..|...-++ .+..||-||.+.
T Consensus 1 cp~C~e~~-d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEEL-DETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCccccc-ccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67899988 444445666 678888888777665 478899999874
No 70
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.024 Score=57.77 Aligned_cols=49 Identities=35% Similarity=0.568 Sum_probs=42.6
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
.||..|+||... +-.....||+|.=|+.||.+-|-.++.|=.||..+..
T Consensus 420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 678899999654 4445789999999999999999999999999998875
No 71
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.31 E-value=0.014 Score=58.97 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=40.1
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
...|.+|-.=|-|.. .+.-|-|-||+.||.+.|..+.+||.|...|.+.
T Consensus 15 ~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 457999976666652 2334999999999999999999999999888775
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.051 Score=54.99 Aligned_cols=49 Identities=22% Similarity=0.465 Sum_probs=38.9
Q ss_pred ccCCCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCcccccc
Q 013215 354 ISGEDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEV 405 (447)
Q Consensus 354 ~s~ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I 405 (447)
+..+..+|++|+.+-.++ ..|. -|-+||..||-+.+.....||+=-.++
T Consensus 296 l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345667899999997776 4444 389999999999999999999855444
No 73
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.29 E-value=0.019 Score=61.15 Aligned_cols=50 Identities=22% Similarity=0.628 Sum_probs=39.7
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHh-----cCCCCCccccccCCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-----INASCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-----~~~tCPlCR~~I~~~~ 409 (447)
+..+|-+|-+.-++. .+..|.|.||+.||..+.. .+-+||.|-..+.-+.
T Consensus 535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 356799998765554 7788999999999988873 3788999988776653
No 74
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.0034 Score=64.40 Aligned_cols=52 Identities=25% Similarity=0.652 Sum_probs=46.6
Q ss_pred ceeeeecccccCC-CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215 359 AVCCICLAKYANN-DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL 410 (447)
Q Consensus 359 ~~C~ICL~~y~~~-d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 410 (447)
..|+||.+.|... +.+..+-|+|.+|.+||.+||.....||.|+.++.....
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNGF 249 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhhH
Confidence 3499999999887 788899999999999999999888899999999877654
No 75
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.01 E-value=0.048 Score=49.89 Aligned_cols=54 Identities=35% Similarity=0.719 Sum_probs=37.8
Q ss_pred CCceeeeecccccCCCcceEeccC-------------CcccHHHHHHHHhc-----------------------------
Q 013215 357 EDAVCCICLAKYANNDELRELPCS-------------HFFHKDCVDKWLKI----------------------------- 394 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~-------------H~FH~~CId~WL~~----------------------------- 394 (447)
||..|+|||+-=.+. ..|-|. -.=|..|+|+.-+.
T Consensus 1 ed~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE 77 (162)
T ss_pred CCccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence 467899999764444 444453 34589999997631
Q ss_pred --CCCCCccccccCCCCCCCC
Q 013215 395 --NASCPLCKSEVGDTVLGSI 413 (447)
Q Consensus 395 --~~tCPlCR~~I~~~~~~~~ 413 (447)
+..|||||.+|..+....+
T Consensus 78 ~~~L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 78 QPELACPLCRGEVKGWTVVEP 98 (162)
T ss_pred cccccCccccCceeceEEchH
Confidence 2349999999999876543
No 76
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.019 Score=57.19 Aligned_cols=47 Identities=21% Similarity=0.501 Sum_probs=41.3
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
..|-||...|..+ .+..|+|.|+..|--+=++....|++|-+.+...
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccccc
Confidence 3499999999998 7888999999999999899999999998776543
No 77
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.067 Score=52.18 Aligned_cols=57 Identities=18% Similarity=0.351 Sum_probs=49.9
Q ss_pred CCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCccccccCCCCCCCC
Q 013215 357 EDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSI 413 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~ 413 (447)
....|++|.+.+.+...+..|. |+|+|..+|+.+.++....||+|-.++.+......
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEee
Confidence 5678999999999988777775 99999999999999999999999999888765543
No 78
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.04 Score=56.37 Aligned_cols=44 Identities=25% Similarity=0.667 Sum_probs=33.0
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
.+.-|.||+++..+ ...+||+|+=+ |..- -+...+||+||+.|.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeecCCcEEE--chHH-HhhCCCCchhHHHHH
Confidence 34569999998777 48999999944 6544 344556999998774
No 79
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.18 E-value=0.03 Score=54.43 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=34.6
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
.|--|.. +..+++...+.|.|+||..|...=. ...||+||..|.-..
T Consensus 5 hCn~C~~-~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFR-FPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQ 51 (233)
T ss_pred Eeccccc-cCCCCceeeeechhhhhhhhcccCC--ccccccccceeeeee
Confidence 3665543 4458899999999999999975422 227999999965543
No 80
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.94 E-value=0.072 Score=55.12 Aligned_cols=28 Identities=25% Similarity=0.942 Sum_probs=22.8
Q ss_pred cCCcccHHHHHHHHhc-------------CCCCCccccccC
Q 013215 379 CSHFFHKDCVDKWLKI-------------NASCPLCKSEVG 406 (447)
Q Consensus 379 C~H~FH~~CId~WL~~-------------~~tCPlCR~~I~ 406 (447)
|.-++|.+|+-+|+-. +.+||.||+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 6788999999999932 456999999854
No 81
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.69 E-value=0.096 Score=52.41 Aligned_cols=52 Identities=31% Similarity=0.748 Sum_probs=40.5
Q ss_pred CceeeeecccccCCCc-ceEeccC-----CcccHHHHHHHHh--cCCCCCccccccCCCC
Q 013215 358 DAVCCICLAKYANNDE-LRELPCS-----HFFHKDCVDKWLK--INASCPLCKSEVGDTV 409 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~-lr~LPC~-----H~FH~~CId~WL~--~~~tCPlCR~~I~~~~ 409 (447)
+..|-||..+...... ..+.||. +..|..|+++|+. .+.+|.+|........
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~ 137 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVG 137 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecc
Confidence 4789999997765432 5678874 7789999999996 6778999998766553
No 82
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.27 E-value=0.059 Score=53.76 Aligned_cols=47 Identities=28% Similarity=0.689 Sum_probs=40.1
Q ss_pred eeeecccccCCC-cceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 361 CCICLAKYANND-ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 361 C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
|+||.+.+-+.. .+..++|+|.-|..|.......+-+||+|.. +...
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDM 208 (276)
T ss_pred CchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence 999998876665 5678999999999999999888899999998 5443
No 83
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.96 E-value=0.14 Score=50.74 Aligned_cols=54 Identities=17% Similarity=0.468 Sum_probs=42.5
Q ss_pred CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCCCCC
Q 013215 357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLG 411 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~ 411 (447)
....|+|+..+|........| ||||+|-..+|..- +....||+|-.++.+....
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDII 166 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEE
Confidence 457799999999665555444 79999999999995 4456799999998876543
No 84
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.076 Score=53.33 Aligned_cols=44 Identities=30% Similarity=0.621 Sum_probs=31.3
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
.|--|=.. -.-.-|.+||+|+||.+|-.. ...+.||+|-..|.+
T Consensus 92 fCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 92 FCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred eecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence 45566333 223358899999999999654 456689999887765
No 85
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=0.18 Score=47.07 Aligned_cols=50 Identities=26% Similarity=0.712 Sum_probs=33.3
Q ss_pred eeeeecccccCC----CcceEeccCCcccHHHHHHHHhc-----------CCCCCccccccCCCC
Q 013215 360 VCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKI-----------NASCPLCKSEVGDTV 409 (447)
Q Consensus 360 ~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~~~~ 409 (447)
.|-||..---+| +..--..|+.-||.-|+..||+. -..||-|..+|.-+.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 377775322222 12334559999999999999954 134999998876543
No 86
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.39 E-value=0.27 Score=50.24 Aligned_cols=48 Identities=29% Similarity=0.704 Sum_probs=36.5
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHH--HhcCCCCCccccccC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKW--LKINASCPLCKSEVG 406 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~W--L~~~~tCPlCR~~I~ 406 (447)
+|...|.||-+...- ...+||+|..|--|--+- |-....||+||.+-.
T Consensus 59 Een~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 59 EENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 345569999877654 479999999999996543 456788999998743
No 87
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.035 Score=55.25 Aligned_cols=45 Identities=24% Similarity=0.624 Sum_probs=32.5
Q ss_pred CCceeeeecccccCCCcceEeccCCcc-cHHHHHHHHhcCCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFF-HKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~F-H~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
.+.-|+||++.-. +...|+|+|.- +.+|- ++-+.||+||+.|.+.
T Consensus 299 ~~~LC~ICmDaP~---DCvfLeCGHmVtCt~CG----krm~eCPICRqyi~rv 344 (350)
T KOG4275|consen 299 TRRLCAICMDAPR---DCVFLECGHMVTCTKCG----KRMNECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHHhcCCc---ceEEeecCcEEeehhhc----cccccCchHHHHHHHH
Confidence 3678999987644 45899999974 44554 3345899999987653
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=0.16 Score=57.15 Aligned_cols=43 Identities=23% Similarity=0.696 Sum_probs=33.8
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
.+|..|--..+-+ ...--|+|.||..|+. .....||.|+.+..
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 4699998776655 4555699999999998 56678999998443
No 89
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.57 E-value=0.25 Score=37.46 Aligned_cols=45 Identities=22% Similarity=0.577 Sum_probs=33.8
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
..|..|...=..+ ..+||+|+-...|.+- .+-+-||+|-.++...
T Consensus 8 ~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccCC
Confidence 4577776543343 7999999999999775 5566799999888664
No 90
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.68 E-value=0.17 Score=56.58 Aligned_cols=49 Identities=33% Similarity=0.659 Sum_probs=39.6
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--CCCCCccccccCCCCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--NASCPLCKSEVGDTVLG 411 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~~~~~ 411 (447)
..|.||++ .+.....+|+|.|+.+|+.+-+.. ..-||+||..+.....-
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 68999998 455678889999999999887744 44699999988776543
No 91
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.54 E-value=0.22 Score=49.85 Aligned_cols=52 Identities=27% Similarity=0.541 Sum_probs=38.9
Q ss_pred ceeeeecccccCCCcceEec-cCCcccHHHHHHHH-hcCCCCCcccc-ccCCCCCCCC
Q 013215 359 AVCCICLAKYANNDELRELP-CSHFFHKDCVDKWL-KINASCPLCKS-EVGDTVLGSI 413 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL-~~~~tCPlCR~-~I~~~~~~~~ 413 (447)
..|..|-.-..+. .+.| |+|.|+.+||..-| .....||.|.. +|+-+...+.
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD 329 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPD 329 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCcc
Confidence 4599997776666 5557 79999999999776 66888999965 4555554443
No 92
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=0.29 Score=47.03 Aligned_cols=40 Identities=28% Similarity=0.668 Sum_probs=29.1
Q ss_pred eeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCC
Q 013215 361 CCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
|-.|-+ .+..+..|||.|+ ++..|=.. -.+||+|+.....
T Consensus 161 Cr~C~~---~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGE---REATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCc---CCceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 778854 4556899999865 67778654 4559999977654
No 93
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.36 E-value=0.17 Score=36.39 Aligned_cols=41 Identities=24% Similarity=0.688 Sum_probs=21.2
Q ss_pred eeeecccccCCCcceEeccCCcccHHHHHHHHhcCC--CCCcc
Q 013215 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA--SCPLC 401 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~--tCPlC 401 (447)
|.+|-+-.-.|+....-.|+=.+|..|++++++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 445544444453333334777899999999997655 79988
No 94
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=0.32 Score=48.67 Aligned_cols=47 Identities=32% Similarity=0.745 Sum_probs=37.2
Q ss_pred ceeeeecccccCCCc---ceEeccCCcccHHHHHHHHhc-CCCCCcccccc
Q 013215 359 AVCCICLAKYANNDE---LRELPCSHFFHKDCVDKWLKI-NASCPLCKSEV 405 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~---lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I 405 (447)
.+|-||=++|..++. -+.|-|+|.|+..|+.+-+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 359999999987743 356669999999999776644 44599999985
No 95
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.36 E-value=0.25 Score=55.91 Aligned_cols=35 Identities=26% Similarity=0.629 Sum_probs=28.4
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHH
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL 392 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL 392 (447)
.+..|.+|...+... ...+-||+|.||++||.+=.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 356799998877654 67899999999999997754
No 96
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=0.34 Score=47.66 Aligned_cols=51 Identities=29% Similarity=0.782 Sum_probs=36.3
Q ss_pred CceeeeecccccCCCcc-eEecc-----CCcccHHHHHHHHhcC--------CCCCccccccCCC
Q 013215 358 DAVCCICLAKYANNDEL-RELPC-----SHFFHKDCVDKWLKIN--------ASCPLCKSEVGDT 408 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~l-r~LPC-----~H~FH~~CId~WL~~~--------~tCPlCR~~I~~~ 408 (447)
|..|=||+..=+|+-.- =+-|| +|--|..|+..|+..+ -+||-|+.+....
T Consensus 20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 45577999876655322 24576 3899999999999432 2499999987654
No 97
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.23 E-value=0.38 Score=48.10 Aligned_cols=29 Identities=21% Similarity=0.706 Sum_probs=23.8
Q ss_pred cCCcccHHHHHHHH-------------hcCCCCCccccccCC
Q 013215 379 CSHFFHKDCVDKWL-------------KINASCPLCKSEVGD 407 (447)
Q Consensus 379 C~H~FH~~CId~WL-------------~~~~tCPlCR~~I~~ 407 (447)
|..++|.+|+.+|+ +.+.+||+||++..-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 67889999999998 246789999998653
No 98
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.08 E-value=0.27 Score=36.18 Aligned_cols=32 Identities=25% Similarity=0.723 Sum_probs=23.6
Q ss_pred EeccC-CcccHHHHHHHHhcCCCCCccccccCC
Q 013215 376 ELPCS-HFFHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 376 ~LPC~-H~FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
...|+ |..+..|+...|.+...||+|+.++..
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 55684 999999999999999999999998865
No 99
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.43 E-value=0.5 Score=53.02 Aligned_cols=53 Identities=25% Similarity=0.695 Sum_probs=39.9
Q ss_pred CCCceeeeecccccCCCcceEeccC-----CcccHHHHHHHHhc--CCCCCccccccCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKI--NASCPLCKSEVGDTV 409 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR~~I~~~~ 409 (447)
+|+..|-||..+=..++++ --||+ -..|.+|+..|+.- ...|-+|+.++.=+.
T Consensus 10 ~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 4567799999886666655 45665 56899999999954 455999999876443
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.78 E-value=0.49 Score=48.23 Aligned_cols=53 Identities=23% Similarity=0.583 Sum_probs=36.3
Q ss_pred CCceeeeecccccCCCc-ceEeccCCcccHHHHHHHH-hcCCCCCccccccCCCC
Q 013215 357 EDAVCCICLAKYANNDE-LRELPCSHFFHKDCVDKWL-KINASCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~-lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~ 409 (447)
|++.|+.|++++.-.|+ ...-||+--.|.-|..--- .-+..||-||+...+..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 44559999999876553 4556688665666643322 23788999999887754
No 101
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=0.22 Score=54.44 Aligned_cols=48 Identities=31% Similarity=0.598 Sum_probs=35.4
Q ss_pred ceeeeecccccCCCcc-eEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 359 AVCCICLAKYANNDEL-RELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~l-r~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
..|.||+..|...... +-|-|+|.-|..|+.+ -.|++|| |+++=.+..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~De~~~~ 60 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRDEDSSL 60 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCccccchh
Confidence 4588999998876422 3444999999999987 4578899 877654443
No 102
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.95 E-value=0.3 Score=57.27 Aligned_cols=49 Identities=37% Similarity=0.651 Sum_probs=39.7
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
...|.||++..... -...-|+|.|++.|...|+..+..||.|+......
T Consensus 1153 ~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~df 1201 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKSIKGDF 1201 (1394)
T ss_pred ccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhhhhhhh
Confidence 44799999998733 14566999999999999999999999999544443
No 103
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.71 E-value=0.71 Score=50.57 Aligned_cols=52 Identities=35% Similarity=0.812 Sum_probs=42.6
Q ss_pred ccCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCC
Q 013215 354 ISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGS 412 (447)
Q Consensus 354 ~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~ 412 (447)
+......|.||+.+. ..+..+|. |..|+.+|+..+..||+|...+..+....
T Consensus 475 l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~ 526 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLS 526 (543)
T ss_pred hhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccC
Confidence 344556799999988 56788899 89999999999999999998887765433
No 104
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=81.86 E-value=0.79 Score=46.49 Aligned_cols=45 Identities=22% Similarity=0.648 Sum_probs=36.0
Q ss_pred CCCceeeeecccccCCCcceEecc--CCcccHHHHHHHHhcCCCCCccccccCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPC--SHFFHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC--~H~FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
.+-.+|+||.+.+..+ ..-| +|+-+..|-. +....||.||.+++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 3456799999998887 4557 6999998864 567889999999984
No 105
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=81.15 E-value=1.7 Score=32.98 Aligned_cols=43 Identities=28% Similarity=0.761 Sum_probs=34.8
Q ss_pred CceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCc--cccc
Q 013215 358 DAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPL--CKSE 404 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPl--CR~~ 404 (447)
...|.+|-+.|.+++.+.+=| |+-.+|++|-++ ...|-+ |..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 346999999999888888888 999999999765 666755 6544
No 106
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=80.12 E-value=0.47 Score=52.71 Aligned_cols=52 Identities=33% Similarity=0.653 Sum_probs=42.3
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc---CCCCCccccccCCCCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI---NASCPLCKSEVGDTVLGS 412 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~~~~~ 412 (447)
..+|.||+..|.++ ..+.|.|.|...|+..=|.. ...||+|+..+.+.....
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E 75 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE 75 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence 46799999999988 67779999999999887644 446999998888766544
No 107
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.54 E-value=1.4 Score=49.39 Aligned_cols=40 Identities=25% Similarity=0.613 Sum_probs=28.5
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCc
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPL 400 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPl 400 (447)
.|+||--... +--..-..|+|+-|..|...|+.....||.
T Consensus 1030 ~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 3666644332 222234558999999999999999999984
No 108
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=76.68 E-value=1.3 Score=46.71 Aligned_cols=33 Identities=33% Similarity=0.670 Sum_probs=28.5
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHH
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL 392 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL 392 (447)
|+.+|.||..-|+++ ..|||+|-.+..|-..-+
T Consensus 3 eelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCc---eEeecccHHHHHHHHhhc
Confidence 567899999999998 899999999999986443
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.26 E-value=1.4 Score=49.44 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=39.4
Q ss_pred CceeeeecccccCC-CcceEec---cCCcccHHHHHHHHhc------CCCCCccccccCCCCCC
Q 013215 358 DAVCCICLAKYANN-DELRELP---CSHFFHKDCVDKWLKI------NASCPLCKSEVGDTVLG 411 (447)
Q Consensus 358 d~~C~ICL~~y~~~-d~lr~LP---C~H~FH~~CId~WL~~------~~tCPlCR~~I~~~~~~ 411 (447)
...|.||.-++.++ |-.-.+| |.|-||..||.+|+.+ +-+|++|+.-|..+...
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~ 159 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC 159 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh
Confidence 34466666666653 3355666 9999999999999943 55699999998877643
No 110
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=68.32 E-value=11 Score=37.98 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=22.8
Q ss_pred HHHHHHhhhhhhhheeeceEEEeccCC
Q 013215 226 EYFKMALDCFFAVWFVVGNVWIFGGHS 252 (447)
Q Consensus 226 ~~l~~~L~~F~liWfIvG~vwvf~~~s 252 (447)
..|.++..++.++|+++-.+|+.+...
T Consensus 191 ~~F~~l~~~~vvLWl~YPivW~ig~~G 217 (285)
T COG5524 191 SLFLTLRNYTVVLWLGYPIVWLIGPGG 217 (285)
T ss_pred HHHHHHHHHHHHHHHhccceeEEcccc
Confidence 458889999999999999999996443
No 111
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=68.24 E-value=2 Score=47.25 Aligned_cols=42 Identities=26% Similarity=0.762 Sum_probs=27.1
Q ss_pred Cceeeeecc-----cccCCCcceEeccCCcccHHHHHHHHhcCCCCCccc
Q 013215 358 DAVCCICLA-----KYANNDELRELPCSHFFHKDCVDKWLKINASCPLCK 402 (447)
Q Consensus 358 d~~C~ICL~-----~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 402 (447)
...|-||-. .|+.....+-.-|+++||+.|... .+..||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 345888832 244333445566999999999644 334499994
No 112
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=64.36 E-value=3.1 Score=41.41 Aligned_cols=48 Identities=25% Similarity=0.604 Sum_probs=34.9
Q ss_pred CceeeeecccccCCCcceEe---c-cCCcccHHHHHHHHh---------cCCCCCcccccc
Q 013215 358 DAVCCICLAKYANNDELREL---P-CSHFFHKDCVDKWLK---------INASCPLCKSEV 405 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~L---P-C~H~FH~~CId~WL~---------~~~tCPlCR~~I 405 (447)
..+|-+|.++|...+..+.. | |.-++|..|+..-+. ....||.|+.-+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 35799999999655544432 2 888999999998542 256799998743
No 113
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=63.72 E-value=3.8 Score=40.11 Aligned_cols=51 Identities=33% Similarity=0.694 Sum_probs=37.7
Q ss_pred CCceeeeeccc-ccCCC-cceEec-cCCcccHHHHHHHHhc-CCCCC--ccccccCC
Q 013215 357 EDAVCCICLAK-YANND-ELRELP-CSHFFHKDCVDKWLKI-NASCP--LCKSEVGD 407 (447)
Q Consensus 357 ed~~C~ICL~~-y~~~d-~lr~LP-C~H~FH~~CId~WL~~-~~tCP--lCR~~I~~ 407 (447)
+|..|+||-.+ |-.++ .+..-| |-|..|..|+++-|.. .+.|| -|-.-+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 35679999876 55554 455566 9999999999999965 66799 77544433
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.77 E-value=3 Score=43.78 Aligned_cols=37 Identities=32% Similarity=0.743 Sum_probs=27.8
Q ss_pred CceeeeecccccCC-CcceEeccCCcccHHHHHHHHhc
Q 013215 358 DAVCCICLAKYANN-DELRELPCSHFFHKDCVDKWLKI 394 (447)
Q Consensus 358 d~~C~ICL~~y~~~-d~lr~LPC~H~FH~~CId~WL~~ 394 (447)
..+|.||..++... +....+-|+|.|+.+|+.+-+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 35699999555544 44445669999999999988864
No 115
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=59.45 E-value=6.9 Score=39.38 Aligned_cols=51 Identities=29% Similarity=0.634 Sum_probs=38.0
Q ss_pred eeeeeccc-ccCCC-cceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCCC
Q 013215 360 VCCICLAK-YANND-ELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVL 410 (447)
Q Consensus 360 ~C~ICL~~-y~~~d-~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~ 410 (447)
.|++|-.+ |-.++ .+..-||+|-.|..|++.-+.. ...||-|-..+.+..-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 38888754 55554 3445579999999999998855 5679999887777653
No 116
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=57.42 E-value=6.6 Score=29.08 Aligned_cols=42 Identities=21% Similarity=0.528 Sum_probs=19.6
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhcC-----CCCCccccc
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN-----ASCPLCKSE 404 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~-----~tCPlCR~~ 404 (447)
.|+|....+..+ +|-..|.|+-+. =++.||+.+ -.||+|.++
T Consensus 4 ~CPls~~~i~~P--~Rg~~C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIP--VRGKNCKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSE--EEETT--SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeC--ccCCcCcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 477777776654 677779886321 144676432 359999864
No 117
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.47 E-value=9.8 Score=39.85 Aligned_cols=46 Identities=24% Similarity=0.522 Sum_probs=37.4
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC---CCCCccccc
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN---ASCPLCKSE 404 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~ 404 (447)
-.|+|=-+.=.+...-+.|.|||+-.++=|.+-.+.. ..||-|=.+
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 4699988777777888999999999999999976543 469999433
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=56.44 E-value=8.5 Score=43.37 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=30.1
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCc
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPL 400 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPl 400 (447)
+.|++|-.... |..+..--|+|.-|.+|+.+|+..+.-||.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 46999965432 222222239999999999999999998987
No 119
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.58 E-value=6 Score=42.24 Aligned_cols=53 Identities=30% Similarity=0.658 Sum_probs=39.8
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC--------CCC--CccccccCCCCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN--------ASC--PLCKSEVGDTVLG 411 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~--------~tC--PlCR~~I~~~~~~ 411 (447)
.+..|-||.+.+.. .+..+.|+|.|+..|....+..+ -+| +-|++.+.+....
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~ 131 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVE 131 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceee
Confidence 35679999999887 67788899999999999888441 245 4577766665543
No 120
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=54.34 E-value=6.7 Score=37.44 Aligned_cols=41 Identities=34% Similarity=0.818 Sum_probs=27.1
Q ss_pred Cceeeeeccc-----ccCCCcceEeccCCcccHHHHHHHHhcCCCCCcccc
Q 013215 358 DAVCCICLAK-----YANNDELRELPCSHFFHKDCVDKWLKINASCPLCKS 403 (447)
Q Consensus 358 d~~C~ICL~~-----y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 403 (447)
...|-||-.+ |+.....+---|+-+||..|..+ ..||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 3458888653 33432333334999999999762 66999954
No 121
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.32 E-value=4.3 Score=45.84 Aligned_cols=45 Identities=24% Similarity=0.547 Sum_probs=32.9
Q ss_pred CCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccc
Q 013215 357 EDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCK 402 (447)
Q Consensus 357 ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 402 (447)
.+..|+-|.+..-.. +.+..+-|+|+||+.|+..-..+++ |-.|-
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 344799998876522 4578888999999999987766555 65553
No 122
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.97 E-value=15 Score=36.35 Aligned_cols=32 Identities=13% Similarity=0.330 Sum_probs=28.0
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHH
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL 392 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL 392 (447)
-..|+.||..+.++ ...|=+|+|.++||-..+
T Consensus 43 FdcCsLtLqPc~dP---vit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITPDGYLFDREAILEYI 74 (303)
T ss_pred cceeeeecccccCC---ccCCCCeeeeHHHHHHHH
Confidence 45699999999998 677789999999999886
No 123
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.07 E-value=10 Score=39.95 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=34.6
Q ss_pred ceeeeecccccCCCcceEec--cCCcccHHHHHHHHhcCCCCCcccccc
Q 013215 359 AVCCICLAKYANNDELRELP--CSHFFHKDCVDKWLKINASCPLCKSEV 405 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LP--C~H~FH~~CId~WL~~~~tCPlCR~~I 405 (447)
..|++|.-.++..+....+- |+|.|+..|...|...+..|..|-...
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~r~~ 355 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECCRYK 355 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCccccc
Confidence 45888887776555433333 799999999999999999886664433
No 124
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=44.83 E-value=18 Score=32.54 Aligned_cols=52 Identities=23% Similarity=0.549 Sum_probs=35.1
Q ss_pred CceeeeecccccCCCcceEec-cCCcccHHH-HHHHH--hcCCCCCccccccCCCC
Q 013215 358 DAVCCICLAKYANNDELRELP-CSHFFHKDC-VDKWL--KINASCPLCKSEVGDTV 409 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LP-C~H~FH~~C-Id~WL--~~~~tCPlCR~~I~~~~ 409 (447)
-.+|-||-+...+..=++.=- |+---+-.| ..-|- ...+.||.||.......
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 467999998877663333223 676666666 45564 45888999998876653
No 125
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.89 E-value=18 Score=37.19 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=37.8
Q ss_pred ceeeeecccccCCCcceEec--cCCcccHHHHHHHHhcCCCCCccccccCCCCCC
Q 013215 359 AVCCICLAKYANNDELRELP--CSHFFHKDCVDKWLKINASCPLCKSEVGDTVLG 411 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LP--C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~ 411 (447)
..|+||-+.... ...-.|| |+|.-|..|...-...+.+||.||.+....+..
T Consensus 250 ~s~p~~~~~~~~-~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~ 303 (327)
T KOG2068|consen 250 PSCPICYEDLDL-TDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKK 303 (327)
T ss_pred CCCCCCCCcccc-cccccccccccccchhhhhhcccccCCCCCccCCccccCccc
Confidence 569999887622 2234555 678888888888788899999999776665443
No 126
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=43.49 E-value=23 Score=31.05 Aligned_cols=32 Identities=31% Similarity=0.704 Sum_probs=19.8
Q ss_pred ccCCCCCchhh-HHHHhhhhhhhhhccceeeeee
Q 013215 130 RHEHPRAPLFE-WIVGYAAGCVATLPLLYWRYRQ 162 (447)
Q Consensus 130 ~~E~P~~PL~~-WivgY~~~c~~~l~lv~~~y~~ 162 (447)
..-.|-.|+.+ .++.-.+-|+-+..|++| ||+
T Consensus 52 f~~~~p~p~~iffavcI~l~~~s~~lLI~W-YR~ 84 (118)
T PF10856_consen 52 FPQDPPKPLHIFFAVCILLICISAILLIFW-YRQ 84 (118)
T ss_pred ecCCCCCceEEehHHHHHHHHHHHHhheee-hhc
Confidence 44455566664 445555666677777777 764
No 127
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=43.08 E-value=16 Score=28.25 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=14.7
Q ss_pred CCCCCccccccCCCCCCCCC
Q 013215 395 NASCPLCKSEVGDTVLGSIS 414 (447)
Q Consensus 395 ~~tCPlCR~~I~~~~~~~~~ 414 (447)
+..||+||..+.-.+..+++
T Consensus 2 k~~CPlCkt~~n~gsk~~pN 21 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSKDPPN 21 (61)
T ss_pred CccCCcccchhhcCCCCCCC
Confidence 56799999998666655443
No 128
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=42.95 E-value=20 Score=23.63 Aligned_cols=37 Identities=19% Similarity=0.582 Sum_probs=24.2
Q ss_pred eeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
|..|-..+.+.+.... .=+..||.+|. .|..|+..+.
T Consensus 2 C~~C~~~i~~~~~~~~-~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLR-ALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEE-eCCccccccCC--------CCcccCCcCc
Confidence 7778777766532222 23789999884 5888877653
No 129
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=42.75 E-value=23 Score=36.21 Aligned_cols=51 Identities=24% Similarity=0.625 Sum_probs=35.5
Q ss_pred CCceeeeeccccc--------------C-CC-cceEeccCCcccHHHHHHHHhc---------CCCCCccccccCC
Q 013215 357 EDAVCCICLAKYA--------------N-ND-ELRELPCSHFFHKDCVDKWLKI---------NASCPLCKSEVGD 407 (447)
Q Consensus 357 ed~~C~ICL~~y~--------------~-~d-~lr~LPC~H~FH~~CId~WL~~---------~~tCPlCR~~I~~ 407 (447)
.+.+|++|+..=. | |- .-.--||+|+--.+-+.-|-++ ++.||.|-..+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3567999986521 1 11 1235689999888889999865 5669999776644
No 130
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.09 E-value=19 Score=28.48 Aligned_cols=12 Identities=33% Similarity=1.090 Sum_probs=8.8
Q ss_pred cccHHHHHHHHh
Q 013215 382 FFHKDCVDKWLK 393 (447)
Q Consensus 382 ~FH~~CId~WL~ 393 (447)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 132
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=34.98 E-value=16 Score=35.37 Aligned_cols=42 Identities=24% Similarity=0.673 Sum_probs=33.1
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcc
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLC 401 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlC 401 (447)
-..|.+|-+=.-.+ ++-=.|+=-+|..|+.+.++....||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 35699997654444 3444578889999999999999999999
No 133
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=34.71 E-value=44 Score=33.45 Aligned_cols=24 Identities=38% Similarity=0.879 Sum_probs=17.6
Q ss_pred ccHHHHHHHHhc-CCCCCccccccCCC
Q 013215 383 FHKDCVDKWLKI-NASCPLCKSEVGDT 408 (447)
Q Consensus 383 FH~~CId~WL~~-~~tCPlCR~~I~~~ 408 (447)
=|++|..+|-.+ |..|| |..+.+.
T Consensus 57 GHrdCFEK~HlIanQ~~p--rsk~skS 81 (285)
T PF06937_consen 57 GHRDCFEKYHLIANQDCP--RSKLSKS 81 (285)
T ss_pred chHHHHHHHHHHHcCCCC--ccccccc
Confidence 479999999654 88899 4555443
No 134
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=34.32 E-value=20 Score=27.71 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=11.8
Q ss_pred CCCCCccccccCCCC
Q 013215 395 NASCPLCKSEVGDTV 409 (447)
Q Consensus 395 ~~tCPlCR~~I~~~~ 409 (447)
..+||||+.+.....
T Consensus 39 ~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGT 53 (59)
T ss_pred CccCCCcCCccccce
Confidence 467999999887654
No 135
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.07 E-value=31 Score=34.27 Aligned_cols=58 Identities=12% Similarity=0.311 Sum_probs=42.2
Q ss_pred CceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCCCCCCCCccc
Q 013215 358 DAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGAN 417 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~~~~~ 417 (447)
...|+|=--+|........| +|+|+|-..-+.+- ...+|++|-+.+.+..-...++..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg~~ 169 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNGTE 169 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCCCH
Confidence 45698887777766554444 49999999887662 267799999999888766555533
No 136
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=33.09 E-value=24 Score=26.48 Aligned_cols=41 Identities=27% Similarity=0.749 Sum_probs=20.6
Q ss_pred eeeecccccCCC------cceEec-cCCcccHHHHHHHH-hcCCCCCccc
Q 013215 361 CCICLAKYANND------ELRELP-CSHFFHKDCVDKWL-KINASCPLCK 402 (447)
Q Consensus 361 C~ICL~~y~~~d------~lr~LP-C~H~FH~~CId~WL-~~~~tCPlCR 402 (447)
|-=|+..|..+. ....=| |+++|+.+| |..+ ..-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 455666666652 234445 899999999 3333 4566799884
No 137
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=32.45 E-value=7.1e+02 Score=27.35 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=14.4
Q ss_pred CccchhHHHHHHHHHHHHHhhhhhh
Q 013215 104 SGLWISVELVLTLSQVVSAVVVLSV 128 (447)
Q Consensus 104 s~~~i~~el~~~l~qIva~i~vL~l 128 (447)
.-+|+.+-.++.++=++.-|++|+|
T Consensus 90 r~l~~~~~~~L~l~aflSPiaflvL 114 (505)
T PF06638_consen 90 RYLGLILASILGLLAFLSPIAFLVL 114 (505)
T ss_pred eeHHHHHHHHHHHHHHHhhHHHHHh
Confidence 3455555555555555555666666
No 138
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=31.82 E-value=75 Score=32.30 Aligned_cols=54 Identities=9% Similarity=0.176 Sum_probs=34.8
Q ss_pred cCchHHHHHHHHHHHhhhhhhhheeeceEEEeccCCCCCCCcchHHHHHHHHHH
Q 013215 217 LSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAI 270 (447)
Q Consensus 217 ~~~r~~~lv~~l~~~L~~F~liWfIvG~vwvf~~~ss~~daP~Ly~L~iVfLaf 270 (447)
.+.+.+.+|+.|..+-.+|.-.-+|.|+|-.--.....-+.|.-||+.++++++
T Consensus 254 is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~ 307 (322)
T COG0598 254 INNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLL 307 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHH
Confidence 345678889988888888888888888652221113345566677765555443
No 139
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=31.77 E-value=8.7 Score=38.85 Aligned_cols=37 Identities=27% Similarity=0.580 Sum_probs=31.5
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA 396 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~ 396 (447)
+|.+|+++|..+.....+-|.-+||..|+-.|++...
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 7999999998766667777777999999999998754
No 140
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.59 E-value=41 Score=34.96 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=19.7
Q ss_pred CchhhHHHHhhhhhhhhhccceeeeeeccC
Q 013215 136 APLFEWIVGYAAGCVATLPLLYWRYRQSNQ 165 (447)
Q Consensus 136 ~PL~~WivgY~~~c~~~l~lv~~~y~~r~~ 165 (447)
+|+..||+|..+ .+++|.++++..|=++-
T Consensus 186 ~~~~~~vl~~~f-vl~tlaivLFPLWP~~m 214 (372)
T KOG2927|consen 186 RPLMWQVLGVLF-VLVTLAIVLFPLWPRRM 214 (372)
T ss_pred CchhHHHHHHHH-HHHHHHHHhcccCcHHH
Confidence 466677777665 66777777777776553
No 141
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=29.23 E-value=18 Score=38.01 Aligned_cols=50 Identities=22% Similarity=0.597 Sum_probs=0.0
Q ss_pred Cceeeeeccccc--------------CC--CcceEeccCCcccHHHHHHHHhc---------CCCCCccccccCC
Q 013215 358 DAVCCICLAKYA--------------NN--DELRELPCSHFFHKDCVDKWLKI---------NASCPLCKSEVGD 407 (447)
Q Consensus 358 d~~C~ICL~~y~--------------~~--d~lr~LPC~H~FH~~CId~WL~~---------~~tCPlCR~~I~~ 407 (447)
+.+|++|+..-. |. -...--||+|+--.+...-|-+. ++.||.|-..+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 678999996522 11 12345789999999999999865 4569999888764
No 142
>PHA02898 virion envelope protein; Provisional
Probab=29.07 E-value=45 Score=27.84 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=29.2
Q ss_pred hhcccCCC-CCchh-hHHHHhhhhhhhhhccc-eeeeeeccC
Q 013215 127 SVFRHEHP-RAPLF-EWIVGYAAGCVATLPLL-YWRYRQSNQ 165 (447)
Q Consensus 127 ~ls~~E~P-~~PL~-~WivgY~~~c~~~l~lv-~~~y~~r~~ 165 (447)
=+||++.| ++++| +=|+.+.+|.++++.++ |.-|+++..
T Consensus 32 dfSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 32 ELSKSEKPADSALRSISIISFILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 35899999 88888 55888999999999886 444554543
No 143
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.67 E-value=16 Score=27.23 Aligned_cols=14 Identities=29% Similarity=0.921 Sum_probs=7.1
Q ss_pred CCCCCccccccCCC
Q 013215 395 NASCPLCKSEVGDT 408 (447)
Q Consensus 395 ~~tCPlCR~~I~~~ 408 (447)
+..||+|.+++.+.
T Consensus 20 ~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 20 KGCCPLCGRPLDEE 33 (54)
T ss_dssp SEE-TTT--EE-HH
T ss_pred CCcCCCCCCCCCHH
Confidence 33899999988653
No 144
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.34 E-value=58 Score=33.87 Aligned_cols=6 Identities=50% Similarity=0.882 Sum_probs=2.7
Q ss_pred hHHHHH
Q 013215 260 LYRLCI 265 (447)
Q Consensus 260 Ly~L~i 265 (447)
.||+++
T Consensus 218 vyY~si 223 (372)
T KOG2927|consen 218 VYYLSI 223 (372)
T ss_pred eeeeec
Confidence 344444
No 145
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=28.26 E-value=93 Score=23.87 Aligned_cols=46 Identities=26% Similarity=0.501 Sum_probs=31.1
Q ss_pred eeeecccccCCC-cceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 361 CCICLAKYANND-ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 361 C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
|-.|-.++..+. +.++-.=..-|+.+|.+.-| +..||.|-.++.+-
T Consensus 8 CE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred ccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 666766766554 22221113679999999977 67799998877653
No 146
>PRK05978 hypothetical protein; Provisional
Probab=27.35 E-value=40 Score=30.87 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=21.9
Q ss_pred CCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215 380 SHFFHKDCVDKWLKINASCPLCKSEVGDTVL 410 (447)
Q Consensus 380 ~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 410 (447)
+|+|+ .+||.+.+||.|-.++.....
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccCCc
Confidence 48886 899999999999998877644
No 147
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.19 E-value=15 Score=32.95 Aligned_cols=49 Identities=33% Similarity=0.668 Sum_probs=27.7
Q ss_pred CCCceeeeecc-cccCCCcceEeccCCcccHHHHHHH-HhcCC---CCCccccc
Q 013215 356 GEDAVCCICLA-KYANNDELRELPCSHFFHKDCVDKW-LKINA---SCPLCKSE 404 (447)
Q Consensus 356 ~ed~~C~ICL~-~y~~~d~lr~LPC~H~FH~~CId~W-L~~~~---tCPlCR~~ 404 (447)
++|+.|-||+. +|.||---.--.|.-.||..|--+- |+.|. .|-+|+..
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 46889999996 4777722222223334555554332 22233 38899764
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=27.04 E-value=33 Score=38.88 Aligned_cols=48 Identities=29% Similarity=0.601 Sum_probs=31.9
Q ss_pred cCCCceeeeeccccc----CCCc-----ceEec-cCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 355 SGEDAVCCICLAKYA----NNDE-----LRELP-CSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 355 s~ed~~C~ICL~~y~----~~d~-----lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
.+.+..|+-|-.+|. .|.. .-.-| |+|.-|..=|.+ ..+||+|...+.
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 345677888877764 2211 12234 899988887755 789999976653
No 149
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=25.43 E-value=23 Score=37.22 Aligned_cols=30 Identities=27% Similarity=0.667 Sum_probs=0.0
Q ss_pred CcceEeccCCcccHHHHHHHHh------cCCCCCccccc
Q 013215 372 DELRELPCSHFFHKDCVDKWLK------INASCPLCKSE 404 (447)
Q Consensus 372 d~lr~LPC~H~FH~~CId~WL~------~~~tCPlCR~~ 404 (447)
+.-.-|.|+|++-.. .|-. ...+||+||..
T Consensus 302 qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 302 QPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ---------------------------------------
T ss_pred Cceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 345678899987653 6753 25679999964
No 150
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.29 E-value=62 Score=32.76 Aligned_cols=37 Identities=22% Similarity=0.511 Sum_probs=28.9
Q ss_pred CCCceeeeecccccCCCcceEecc----CCcccHHHHHHHHhcC
Q 013215 356 GEDAVCCICLAKYANNDELRELPC----SHFFHKDCVDKWLKIN 395 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC----~H~FH~~CId~WL~~~ 395 (447)
.+...|.+|-+.++|- .-.-| .|.||.-|-++-+|.+
T Consensus 266 ~apLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhh
Confidence 3447799999999886 34445 5999999999988763
No 151
>PRK11827 hypothetical protein; Provisional
Probab=24.62 E-value=25 Score=27.27 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=15.9
Q ss_pred HHHHhcCCCCCccccccCCC
Q 013215 389 DKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 389 d~WL~~~~tCPlCR~~I~~~ 408 (447)
++||..--.||+||.++.-.
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 56777777899999988654
No 152
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=22.91 E-value=76 Score=30.67 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHhhhhhhhheeeceEEEeccCCCCCCCcchHHHHHHHHH
Q 013215 229 KMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLA 269 (447)
Q Consensus 229 ~~~L~~F~liWfIvG~vwvf~~~ss~~daP~Ly~L~iVfLa 269 (447)
.-++++|++|-.+ .+...+|||.|+|+.
T Consensus 9 ~v~~~l~~cVHav-------------RThqe~YWlfIif~F 36 (251)
T COG4700 9 VVMLELLCCVHAV-------------RTHQERYWLFIIFCF 36 (251)
T ss_pred HHHHHHHHHHHHH-------------HhcchHHHHHHHHHh
Confidence 3455666666554 456678999877654
No 153
>PF15444 TMEM247: Transmembrane protein 247
Probab=22.79 E-value=1.2e+02 Score=28.77 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=13.5
Q ss_pred HHHHHHhhhhhhhhee
Q 013215 226 EYFKMALDCFFAVWFV 241 (447)
Q Consensus 226 ~~l~~~L~~F~liWfI 241 (447)
+.|-+++.||.+|-+|
T Consensus 171 nqfamflycfifihii 186 (218)
T PF15444_consen 171 NQFAMFLYCFIFIHII 186 (218)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4688999999998876
No 154
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.17 E-value=79 Score=27.62 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=32.0
Q ss_pred ceeeeecccccCCC----------cceEe-ccCCcccHHHHHHHHhcCCCCCccc
Q 013215 359 AVCCICLAKYANND----------ELREL-PCSHFFHKDCVDKWLKINASCPLCK 402 (447)
Q Consensus 359 ~~C~ICL~~y~~~d----------~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR 402 (447)
..|--|+..|.+.. ....= .|+++|+.+|=.-+-..-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 34999998886531 11223 3899999999777777778899996
No 155
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=21.77 E-value=1.1e+02 Score=30.50 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=36.1
Q ss_pred cchhHHHHHHHHHHHHHhhhhhhccc--CCCCCchhhHHHHhhhhhhhhhcccee
Q 013215 106 LWISVELVLTLSQVVSAVVVLSVFRH--EHPRAPLFEWIVGYAAGCVATLPLLYW 158 (447)
Q Consensus 106 ~~i~~el~~~l~qIva~i~vL~ls~~--E~P~~PL~~WivgY~~~c~~~l~lv~~ 158 (447)
-+-++=+++.+++++++|+|-+.+-+ ++=..=..+|+++|.++.+...=-+||
T Consensus 196 kR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~yy 250 (256)
T PF09788_consen 196 KRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIYY 250 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhhee
Confidence 34556677777778777777766643 332345789999999888776655655
No 156
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=21.61 E-value=1.8e+02 Score=25.98 Aligned_cols=26 Identities=19% Similarity=0.547 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhhhhhheeeceEE
Q 013215 221 FKVLVEYFKMALDCFFAVWFVVGNVW 246 (447)
Q Consensus 221 ~~~lv~~l~~~L~~F~liWfIvG~vw 246 (447)
+..++..+-+++.+|+++||..+..|
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44667778888999999998777554
No 157
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.20 E-value=91 Score=26.46 Aligned_cols=35 Identities=11% Similarity=0.299 Sum_probs=29.5
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHh
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK 393 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~ 393 (447)
..+|.||=.....|+...-.+ +--.|.+|+..=..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 357999999999999998888 77789999977543
No 158
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=21.18 E-value=90 Score=32.23 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=32.2
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcccc
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKS 403 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 403 (447)
..|--|..+.......+--.|+|+|+.+|=.---..-..||-|..
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 448888777666665666669999999994332355667999964
No 159
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=20.44 E-value=49 Score=37.21 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=30.0
Q ss_pred ceeeeecccccCCCcceEeccCCcccH--HHHHHHH--h---cCC--CCCccccccCCCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHK--DCVDKWL--K---INA--SCPLCKSEVGDTVL 410 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~--~CId~WL--~---~~~--tCPlCR~~I~~~~~ 410 (447)
..|.|+... ..+||+++.|+ .|.|.=+ + .+. .||+|.+.+.=...
T Consensus 307 L~CPl~~~R-------m~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 307 LNCPLSKMR-------MSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred ecCCcccce-------eecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 459988766 56777777766 8987643 2 222 39999887655443
No 160
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=20.03 E-value=31 Score=24.83 Aligned_cols=43 Identities=26% Similarity=0.644 Sum_probs=26.6
Q ss_pred eeeecccccCCCcceEeccCCcccHHHHHHHHh------cCCCCCcccc
Q 013215 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLK------INASCPLCKS 403 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~------~~~tCPlCR~ 403 (447)
|.||-..-.+++-+.=--|+-.||..|+..=.+ ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 778887433333232233889999999865432 1345888863
Done!