Query 013215
Match_columns 447
No_of_seqs 296 out of 1722
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 4.1E-17 1.4E-21 134.4 5.3 78 303-407 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 4.9E-17 1.7E-21 128.7 3.7 73 309-409 2-74 (75)
3 2ep4_A Ring finger protein 24; 99.5 5.7E-15 2E-19 116.2 5.5 54 356-409 13-66 (74)
4 2ect_A Ring finger protein 126 99.5 3.9E-15 1.3E-19 118.4 4.5 57 356-412 13-69 (78)
5 1iym_A EL5; ring-H2 finger, ub 99.5 3E-15 1E-19 111.0 2.7 50 357-406 4-54 (55)
6 2kiz_A E3 ubiquitin-protein li 99.5 6.8E-15 2.3E-19 114.3 4.8 54 356-409 12-65 (69)
7 1v87_A Deltex protein 2; ring- 99.5 1.9E-14 6.4E-19 122.6 6.0 60 357-416 24-103 (114)
8 2ecl_A Ring-box protein 2; RNF 99.5 2.4E-14 8.3E-19 115.4 3.4 51 358-408 15-77 (81)
9 2ecm_A Ring finger and CHY zin 99.4 5.9E-14 2E-18 103.9 3.3 50 357-406 4-54 (55)
10 2d8s_A Cellular modulator of i 99.4 1.4E-13 4.8E-18 111.1 4.0 57 356-413 13-76 (80)
11 3dpl_R Ring-box protein 1; ubi 99.4 1.4E-13 4.8E-18 116.9 4.0 50 357-406 36-100 (106)
12 2ea6_A Ring finger protein 4; 99.4 1.3E-13 4.4E-18 106.3 2.9 52 356-407 13-68 (69)
13 3ng2_A RNF4, snurf, ring finge 99.4 1.5E-13 5.2E-18 106.8 2.9 55 356-410 8-66 (71)
14 2xeu_A Ring finger protein 4; 99.4 1.7E-13 5.8E-18 104.1 2.4 53 357-409 2-58 (64)
15 2d8t_A Dactylidin, ring finger 99.3 2.8E-13 9.6E-18 105.9 1.8 55 356-413 13-67 (71)
16 1chc_A Equine herpes virus-1 r 99.3 6.3E-13 2.2E-17 102.6 3.2 50 357-408 4-53 (68)
17 2ecn_A Ring finger protein 141 99.3 7.7E-13 2.6E-17 102.8 2.6 50 357-410 14-63 (70)
18 4a0k_B E3 ubiquitin-protein li 99.3 4.5E-13 1.5E-17 115.7 0.3 50 357-406 47-111 (117)
19 2djb_A Polycomb group ring fin 99.3 3.1E-12 1.1E-16 100.2 4.5 51 357-410 14-65 (72)
20 2ysl_A Tripartite motif-contai 99.2 4.8E-12 1.7E-16 98.8 4.9 50 356-408 18-70 (73)
21 2ct2_A Tripartite motif protei 99.2 4.7E-12 1.6E-16 102.3 5.0 55 356-410 13-71 (88)
22 2csy_A Zinc finger protein 183 99.2 5.3E-12 1.8E-16 101.0 4.1 48 356-406 13-60 (81)
23 2yur_A Retinoblastoma-binding 99.2 7.2E-12 2.4E-16 98.8 4.4 51 356-409 13-66 (74)
24 2ecy_A TNF receptor-associated 99.2 7.8E-12 2.7E-16 96.1 4.5 50 356-408 13-63 (66)
25 2ct0_A Non-SMC element 1 homol 99.2 1.8E-11 6.1E-16 97.3 4.8 55 355-411 12-68 (74)
26 4ayc_A E3 ubiquitin-protein li 99.2 5.5E-12 1.9E-16 111.3 1.7 48 358-408 53-100 (138)
27 4ap4_A E3 ubiquitin ligase RNF 99.1 1.1E-11 3.9E-16 106.9 2.7 55 356-410 5-63 (133)
28 2ysj_A Tripartite motif-contai 99.1 3.6E-11 1.2E-15 91.4 5.1 43 356-401 18-63 (63)
29 2ecv_A Tripartite motif-contai 99.1 4E-11 1.4E-15 95.7 4.9 51 356-409 17-73 (85)
30 2ecw_A Tripartite motif-contai 99.1 4.7E-11 1.6E-15 95.3 5.2 50 356-408 17-72 (85)
31 2egp_A Tripartite motif-contai 99.1 1.4E-11 4.6E-16 97.6 1.7 50 356-408 10-66 (79)
32 1t1h_A Gspef-atpub14, armadill 99.1 3.4E-11 1.2E-15 95.4 3.2 50 356-408 6-56 (78)
33 3lrq_A E3 ubiquitin-protein li 99.1 1.4E-11 4.8E-16 102.9 0.9 50 357-409 21-72 (100)
34 2ecj_A Tripartite motif-contai 99.1 5.1E-11 1.7E-15 88.7 3.8 43 356-401 13-58 (58)
35 1g25_A CDK-activating kinase a 99.1 6.8E-11 2.3E-15 90.6 3.6 53 357-409 2-57 (65)
36 2y43_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 100.3 1.6 49 357-408 21-70 (99)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 5.4E-11 1.8E-15 102.6 2.5 54 356-409 70-127 (133)
38 2ckl_A Polycomb group ring fin 99.0 7.5E-11 2.6E-15 99.5 2.9 49 357-408 14-63 (108)
39 3fl2_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 100.9 2.6 49 357-408 51-100 (124)
40 3ztg_A E3 ubiquitin-protein li 99.0 2E-10 7E-15 93.7 4.1 49 356-407 11-62 (92)
41 1jm7_A BRCA1, breast cancer ty 99.0 1.5E-10 5.1E-15 97.6 2.6 50 358-410 21-73 (112)
42 2ckl_B Ubiquitin ligase protei 98.9 1.5E-10 5E-15 104.9 1.8 49 357-407 53-102 (165)
43 3l11_A E3 ubiquitin-protein li 98.9 9.5E-11 3.2E-15 99.8 -1.2 49 356-407 13-62 (115)
44 1z6u_A NP95-like ring finger p 98.9 2.8E-10 9.4E-15 102.1 1.6 49 358-409 78-127 (150)
45 1rmd_A RAG1; V(D)J recombinati 98.9 2E-10 6.8E-15 98.0 0.2 51 358-411 23-74 (116)
46 3hct_A TNF receptor-associated 98.9 3.3E-10 1.1E-14 97.1 1.5 50 357-409 17-67 (118)
47 2vje_A E3 ubiquitin-protein li 98.8 5.9E-10 2E-14 85.7 1.7 48 357-407 7-57 (64)
48 1vyx_A ORF K3, K3RING; zinc-bi 98.8 2E-09 6.9E-14 81.9 3.3 47 357-406 5-58 (60)
49 1bor_A Transcription factor PM 98.8 1.1E-09 3.8E-14 81.8 1.4 47 357-409 5-51 (56)
50 2y1n_A E3 ubiquitin-protein li 98.8 2.1E-09 7E-14 110.0 3.4 49 358-409 332-381 (389)
51 1e4u_A Transcriptional repress 98.8 2.8E-09 9.4E-14 85.4 3.4 54 356-410 9-65 (78)
52 2kr4_A Ubiquitin conjugation f 98.8 3.2E-09 1.1E-13 86.1 3.5 50 356-408 12-61 (85)
53 2kre_A Ubiquitin conjugation f 98.7 5.1E-09 1.7E-13 87.7 3.9 51 356-409 27-77 (100)
54 1wgm_A Ubiquitin conjugation f 98.7 7.7E-09 2.6E-13 86.2 4.9 51 356-409 20-71 (98)
55 2vje_B MDM4 protein; proto-onc 98.7 2.6E-09 9E-14 81.8 1.5 47 358-407 7-56 (63)
56 3knv_A TNF receptor-associated 98.7 1.7E-09 5.9E-14 96.0 0.4 50 356-408 29-79 (141)
57 1jm7_B BARD1, BRCA1-associated 98.7 2.1E-09 7.2E-14 92.0 0.7 47 357-408 21-68 (117)
58 4ic3_A E3 ubiquitin-protein li 98.7 2E-09 7E-14 84.9 -0.3 45 357-408 23-68 (74)
59 3k1l_B Fancl; UBC, ring, RWD, 98.6 3.7E-09 1.3E-13 105.8 0.5 51 357-407 307-373 (381)
60 2ea5_A Cell growth regulator w 98.6 3.4E-08 1.2E-12 76.8 3.5 48 355-409 12-60 (68)
61 2ecg_A Baculoviral IAP repeat- 98.5 8.8E-09 3E-13 81.3 0.2 45 357-408 24-69 (75)
62 3hcs_A TNF receptor-associated 98.5 1.9E-08 6.7E-13 91.2 1.5 50 357-409 17-67 (170)
63 2c2l_A CHIP, carboxy terminus 98.5 4.7E-08 1.6E-12 94.3 3.1 50 356-408 206-256 (281)
64 2yu4_A E3 SUMO-protein ligase 98.5 4.2E-08 1.4E-12 80.9 1.9 49 357-408 6-64 (94)
65 1wim_A KIAA0161 protein; ring 98.4 1.1E-07 3.7E-12 78.1 1.9 48 357-404 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.3 5.8E-08 2E-12 77.7 -0.4 45 358-409 18-63 (79)
67 2f42_A STIP1 homology and U-bo 98.3 2.2E-07 7.4E-12 85.7 2.3 50 356-408 104-154 (179)
68 3t6p_A Baculoviral IAP repeat- 98.2 2.3E-07 7.8E-12 93.9 -0.2 46 356-408 293-339 (345)
69 2bay_A PRE-mRNA splicing facto 98.2 4.1E-07 1.4E-11 69.3 1.2 50 359-411 4-54 (61)
70 3htk_C E3 SUMO-protein ligase 98.0 1.6E-06 5.6E-11 84.0 1.9 52 356-409 179-234 (267)
71 3vk6_A E3 ubiquitin-protein li 97.8 5.4E-06 1.9E-10 68.8 2.4 46 361-408 4-50 (101)
72 3nw0_A Non-structural maintena 97.5 4.1E-05 1.4E-09 73.5 3.3 50 357-408 179-230 (238)
73 2ko5_A Ring finger protein Z; 94.7 0.021 7.3E-07 46.6 3.4 47 359-410 29-76 (99)
74 2lri_C Autoimmune regulator; Z 93.6 0.031 1.1E-06 42.8 2.2 48 357-407 11-62 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 91.8 0.067 2.3E-06 43.5 2.1 35 357-391 2-36 (101)
76 1we9_A PHD finger family prote 84.5 0.18 6.1E-06 37.9 -0.1 49 357-405 5-59 (64)
77 1wil_A KIAA1045 protein; ring 83.2 0.68 2.3E-05 37.1 2.7 34 357-391 14-47 (89)
78 2k16_A Transcription initiatio 82.2 0.23 8E-06 38.4 -0.3 49 358-407 18-71 (75)
79 2l5u_A Chromodomain-helicase-D 78.1 0.55 1.9E-05 35.0 0.6 45 357-404 10-58 (61)
80 3o36_A Transcription intermedi 75.8 0.37 1.3E-05 43.7 -1.2 46 357-405 3-52 (184)
81 1f62_A Transcription factor WS 75.7 0.62 2.1E-05 33.2 0.2 44 360-403 2-49 (51)
82 1weu_A Inhibitor of growth fam 75.2 3.5 0.00012 33.4 4.6 48 357-407 34-88 (91)
83 1wem_A Death associated transc 72.9 0.87 3E-05 35.3 0.5 48 360-407 17-73 (76)
84 1mm2_A MI2-beta; PHD, zinc fin 71.6 0.54 1.9E-05 35.1 -1.0 48 357-407 8-59 (61)
85 2yql_A PHD finger protein 21A; 68.9 0.37 1.3E-05 35.3 -2.4 45 356-403 7-55 (56)
86 3lqh_A Histone-lysine N-methyl 68.4 1.2 4E-05 40.8 0.3 47 360-406 4-65 (183)
87 3m62_A Ubiquitin conjugation f 65.8 2.3 7.8E-05 48.0 2.1 53 355-410 888-941 (968)
88 1xwh_A Autoimmune regulator; P 65.5 0.82 2.8E-05 34.6 -1.1 46 357-405 7-56 (66)
89 2ysm_A Myeloid/lymphoid or mix 65.5 1 3.5E-05 37.4 -0.6 46 357-402 6-55 (111)
90 2e6r_A Jumonji/ARID domain-con 63.8 0.89 3E-05 36.8 -1.3 51 356-406 14-68 (92)
91 2puy_A PHD finger protein 21A; 62.9 0.38 1.3E-05 35.7 -3.4 49 357-408 4-56 (60)
92 1wep_A PHF8; structural genomi 62.9 4.3 0.00015 31.6 2.6 47 360-406 13-65 (79)
93 1fp0_A KAP-1 corepressor; PHD 62.3 2.6 8.8E-05 34.0 1.2 47 355-404 22-72 (88)
94 2kgg_A Histone demethylase jar 62.3 1.6 5.4E-05 31.4 -0.1 43 360-402 4-52 (52)
95 2l43_A N-teminal domain from h 62.2 2 6.9E-05 34.4 0.6 52 356-407 23-78 (88)
96 1wen_A Inhibitor of growth fam 61.1 3.5 0.00012 31.6 1.8 42 358-406 16-67 (71)
97 2vpb_A Hpygo1, pygopus homolog 60.7 3.5 0.00012 31.1 1.6 33 357-389 7-41 (65)
98 3u5n_A E3 ubiquitin-protein li 59.5 1 3.4E-05 41.7 -2.0 44 357-406 6-56 (207)
99 1wee_A PHD finger family prote 58.7 1 3.5E-05 34.5 -1.7 48 359-407 17-69 (72)
100 3v43_A Histone acetyltransfera 56.3 2 6.9E-05 35.7 -0.4 44 360-403 63-111 (112)
101 1weo_A Cellulose synthase, cat 56.0 38 0.0013 27.3 7.0 55 358-412 16-75 (93)
102 2lv9_A Histone-lysine N-methyl 53.8 2.6 8.8E-05 34.4 -0.2 46 358-403 27-75 (98)
103 1wew_A DNA-binding family prot 53.8 3.3 0.00011 32.2 0.5 48 359-407 17-75 (78)
104 2ri7_A Nucleosome-remodeling f 51.1 2.7 9.3E-05 37.4 -0.5 47 357-404 7-59 (174)
105 1wev_A Riken cDNA 1110020M19; 50.4 1.2 4.1E-05 35.7 -2.7 52 357-408 15-76 (88)
106 2yt5_A Metal-response element- 50.4 5.5 0.00019 29.6 1.2 50 356-405 4-62 (66)
107 2ro1_A Transcription intermedi 49.3 2.5 8.5E-05 38.5 -1.0 44 358-404 2-49 (189)
108 3i2d_A E3 SUMO-protein ligase 47.4 8.9 0.00031 38.7 2.6 48 359-408 250-301 (371)
109 3c6w_A P28ING5, inhibitor of g 46.6 2.6 8.8E-05 31.2 -1.1 40 358-403 8-57 (59)
110 3v43_A Histone acetyltransfera 46.5 13 0.00045 30.7 3.1 45 358-402 5-62 (112)
111 4fo9_A E3 SUMO-protein ligase 45.2 10 0.00036 38.0 2.7 49 359-409 216-268 (360)
112 2xb1_A Pygopus homolog 2, B-ce 44.9 6.8 0.00023 32.3 1.1 50 358-407 3-64 (105)
113 3shb_A E3 ubiquitin-protein li 44.0 2 6.7E-05 33.7 -2.3 26 379-404 47-77 (77)
114 4gne_A Histone-lysine N-methyl 42.1 11 0.00036 31.4 1.8 47 357-409 14-67 (107)
115 2vnf_A ING 4, P29ING4, inhibit 40.8 3.4 0.00012 30.6 -1.3 40 358-403 9-58 (60)
116 2cs3_A Protein C14ORF4, MY039 37.6 23 0.00077 28.1 2.9 36 358-394 15-52 (93)
117 2e6s_A E3 ubiquitin-protein li 37.0 4.6 0.00016 31.5 -1.1 45 360-404 28-77 (77)
118 3o70_A PHD finger protein 13; 36.7 3.6 0.00012 31.3 -1.8 45 358-403 19-66 (68)
119 2co8_A NEDD9 interacting prote 33.8 33 0.0011 26.2 3.4 42 358-409 15-56 (82)
120 2ku3_A Bromodomain-containing 32.8 24 0.00081 26.9 2.4 49 356-404 14-66 (71)
121 2o35_A Hypothetical protein DU 31.9 17 0.00059 29.8 1.5 13 382-394 42-54 (105)
122 2rsd_A E3 SUMO-protein ligase 31.8 3.3 0.00011 31.4 -2.7 46 357-403 8-64 (68)
123 3fyb_A Protein of unknown func 31.5 18 0.00061 29.7 1.5 12 382-393 41-52 (104)
124 2cu8_A Cysteine-rich protein 2 31.4 20 0.00069 26.7 1.8 41 358-408 9-49 (76)
125 2dj7_A Actin-binding LIM prote 30.5 23 0.00078 27.1 2.0 39 358-406 15-53 (80)
126 3ask_A E3 ubiquitin-protein li 30.3 7.9 0.00027 36.4 -0.9 45 360-404 176-225 (226)
127 2lbm_A Transcriptional regulat 29.6 36 0.0012 29.6 3.3 43 358-403 63-116 (142)
128 2pk7_A Uncharacterized protein 29.0 13 0.00043 28.5 0.2 20 388-407 1-20 (69)
129 1iml_A CRIP, cysteine rich int 28.9 15 0.0005 27.6 0.6 25 361-387 3-27 (76)
130 3kqi_A GRC5, PHD finger protei 28.4 10 0.00035 29.1 -0.4 50 358-407 9-64 (75)
131 3asl_A E3 ubiquitin-protein li 28.3 6.4 0.00022 30.0 -1.6 42 360-404 20-69 (70)
132 2jny_A Uncharacterized BCR; st 25.2 12 0.00041 28.5 -0.5 21 388-408 3-23 (67)
133 2g6q_A Inhibitor of growth pro 25.1 9.5 0.00032 28.4 -1.1 40 358-403 10-59 (62)
134 3mjh_B Early endosome antigen 24.4 6.3 0.00021 26.1 -2.0 15 359-373 6-20 (34)
135 2ysm_A Myeloid/lymphoid or mix 23.8 9 0.00031 31.5 -1.7 42 360-404 56-104 (111)
136 2jvx_A NF-kappa-B essential mo 23.6 17 0.00058 23.0 0.0 12 395-406 3-14 (28)
137 1z60_A TFIIH basal transcripti 22.7 26 0.00089 26.0 0.9 41 359-401 16-58 (59)
138 1x62_A C-terminal LIM domain p 22.4 52 0.0018 24.7 2.7 39 358-407 15-53 (79)
139 1zbd_B Rabphilin-3A; G protein 21.2 24 0.00083 30.3 0.5 33 357-389 54-88 (134)
140 1x61_A Thyroid receptor intera 20.6 68 0.0023 23.3 2.9 40 359-407 6-45 (72)
141 2dar_A PDZ and LIM domain prot 20.5 1.2E+02 0.004 23.3 4.4 40 358-408 25-64 (90)
142 1x4l_A Skeletal muscle LIM-pro 20.4 58 0.002 23.8 2.5 41 359-408 6-48 (72)
143 1a7i_A QCRP2 (LIM1); LIM domai 20.2 21 0.00073 27.0 -0.0 40 359-408 8-47 (81)
144 3kv4_A PHD finger protein 8; e 20.0 16 0.00055 37.7 -1.0 51 358-408 4-60 (447)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-17 Score=134.43 Aligned_cols=78 Identities=37% Similarity=0.802 Sum_probs=66.6
Q ss_pred hhhhcccHhhhhcCCceeeeecccCCCCCCCCCCCCCCCCcccccccccccccCCCceeeeecccccCCCcceEeccCCc
Q 013215 303 AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHF 382 (447)
Q Consensus 303 ~~~rgas~~~I~~LP~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~ 382 (447)
...+|++++.|++||.+++...... ..++..|+||+++|..++.++.|||+|.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~---------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~ 64 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGA---------------------------VGQEMCCPICCSEYVKGDVATELPCHHY 64 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSS---------------------------SSSCSEETTTTEECCTTCEEEEETTTEE
T ss_pred cCCCCCCHHHHHhCCCeeecccccc---------------------------cCCCCCCcccChhhcCCCcEEecCCCCh
Confidence 3567999999999999988653211 1235679999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCCccccccCC
Q 013215 383 FHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 383 FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
||..||++|++.+.+||+||+++..
T Consensus 65 Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 65 FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 9999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.9e-17 Score=128.71 Aligned_cols=73 Identities=38% Similarity=0.981 Sum_probs=61.0
Q ss_pred cHhhhhcCCceeeeecccCCCCCCCCCCCCCCCCcccccccccccccCCCceeeeecccccCCCcceEeccCCcccHHHH
Q 013215 309 TAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCV 388 (447)
Q Consensus 309 s~~~I~~LP~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CI 388 (447)
+...+++||.++|+..+.. .++.+|+||+++|.+++.++.|||+|.||..||
T Consensus 2 s~~~i~~lp~~~~~~~~~~----------------------------~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci 53 (75)
T 1x4j_A 2 SSGSSGQLPSYRFNPNNHQ----------------------------SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCV 53 (75)
T ss_dssp CCCCCSSCCCEEBCSSSCS----------------------------SSCCEETTTTEECCBTCEEEEETTTEEEETTHH
T ss_pred cHhhHhhCCcEEecCcccc----------------------------CCCCCCeECCcccCCCCeEEEECCCCHhHHHHH
Confidence 3456788999888753211 235679999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccccCCCC
Q 013215 389 DKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 389 d~WL~~~~tCPlCR~~I~~~~ 409 (447)
++|++.+.+||+||+++.+..
T Consensus 54 ~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 54 DKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp HHHHHHCSSCTTTCCCCCCCC
T ss_pred HHHHHcCCcCcCcCCcCCCCC
Confidence 999999999999999987754
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.7e-15 Score=116.22 Aligned_cols=54 Identities=37% Similarity=0.910 Sum_probs=49.2
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
.++.+|+||++.|.+++.++.|||+|.||..||.+|++.+.+||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 346789999999999999999999999999999999999999999999997643
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=3.9e-15 Score=118.37 Aligned_cols=57 Identities=33% Similarity=0.913 Sum_probs=51.3
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGS 412 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~ 412 (447)
.++.+|+||++.|.+++.++.|||+|.||..||.+|++.+.+||+||+++.......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 346789999999999999999999999999999999999999999999998865543
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.52 E-value=3e-15 Score=111.04 Aligned_cols=50 Identities=44% Similarity=1.038 Sum_probs=46.4
Q ss_pred CCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 357 EDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
++.+|+||+++|.+++.+..+| |+|.||..||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567999999999999999998 9999999999999999999999999874
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=6.8e-15 Score=114.25 Aligned_cols=54 Identities=37% Similarity=1.030 Sum_probs=49.0
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
.++..|+||++.|..++.++.+||+|.||..||.+|++.+.+||+||.++....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 346679999999999889999999999999999999999999999999987653
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=1.9e-14 Score=122.55 Aligned_cols=60 Identities=30% Similarity=0.485 Sum_probs=50.2
Q ss_pred CCceeeeecccccCCC---------------cceEeccCCcccHHHHHHHH-----hcCCCCCccccccCCCCCCCCCcc
Q 013215 357 EDAVCCICLAKYANND---------------ELRELPCSHFFHKDCVDKWL-----KINASCPLCKSEVGDTVLGSISGA 416 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d---------------~lr~LPC~H~FH~~CId~WL-----~~~~tCPlCR~~I~~~~~~~~~~~ 416 (447)
.+..|+|||+.|.++. .++.+||+|.||..||++|| +.+.+||+||..+.....+++.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~ 103 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK 103 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence 3567999999997753 34478899999999999999 557899999999999888777663
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-14 Score=115.39 Aligned_cols=51 Identities=31% Similarity=0.712 Sum_probs=41.4
Q ss_pred Cceeeeeccccc-----------CCCcceEec-cCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 358 DAVCCICLAKYA-----------NNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 358 d~~C~ICL~~y~-----------~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
+..|+||+++|. .++.++.+| |+|.||.+||++||+.+.+||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 455777777764 456677777 999999999999999999999999987643
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=5.9e-14 Score=103.85 Aligned_cols=50 Identities=32% Similarity=0.754 Sum_probs=44.0
Q ss_pred CCceeeeecccccCCC-cceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 357 EDAVCCICLAKYANND-ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
++.+|+||++.|.+++ .+..+||+|.||..||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567999999997654 5788999999999999999999999999999874
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=111.09 Aligned_cols=57 Identities=32% Similarity=0.681 Sum_probs=47.3
Q ss_pred CCCceeeeecccccCCCcceEeccC-----CcccHHHHHHHHhcC--CCCCccccccCCCCCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKIN--ASCPLCKSEVGDTVLGSI 413 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~~~~ 413 (447)
.++.+|.||+++|++++.+ .+||+ |.||.+||++||+.+ .+||+||+++.......+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 3456799999999988776 69997 999999999999775 589999999976654433
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.39 E-value=1.4e-13 Score=116.87 Aligned_cols=50 Identities=30% Similarity=0.588 Sum_probs=43.3
Q ss_pred CCceeeeecccccCCC---------------cceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 357 EDAVCCICLAKYANND---------------ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d---------------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
++..|+||++.|.+.- .++.+||+|.||..||++||+.+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4567999999998651 3677899999999999999999999999999853
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=106.34 Aligned_cols=52 Identities=25% Similarity=0.670 Sum_probs=45.3
Q ss_pred CCCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215 356 GEDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
.++.+|+||++.|.+. +.+..++|+|.||..||++|++.+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999999875 345789999999999999999999999999998864
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.37 E-value=1.5e-13 Score=106.80 Aligned_cols=55 Identities=24% Similarity=0.622 Sum_probs=47.6
Q ss_pred CCCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215 356 GEDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL 410 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 410 (447)
.++.+|+||++.|.+. +....++|+|.||..||++|++.+.+||+||.++.....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 3567899999999764 556889999999999999999999999999999986543
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.36 E-value=1.7e-13 Score=104.11 Aligned_cols=53 Identities=25% Similarity=0.629 Sum_probs=46.3
Q ss_pred CCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 357 EDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
++.+|+||++.|.++ +.+..++|+|.||..||.+|++.+.+||+||.++....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 456799999999864 45678999999999999999999999999999987654
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.8e-13 Score=105.91 Aligned_cols=55 Identities=31% Similarity=0.588 Sum_probs=47.1
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSI 413 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~ 413 (447)
.++.+|+||++.|.+. ..+||+|.||..||.+|++.+.+||+||..+.......+
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence 3567899999999776 778999999999999999999999999999976544333
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.31 E-value=6.3e-13 Score=102.63 Aligned_cols=50 Identities=38% Similarity=0.842 Sum_probs=44.0
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
++.+|+||++.+.++ ...+||+|.||..||.+|++.+.+||+||.++...
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 456799999998764 57899999999999999999999999999998643
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=7.7e-13 Score=102.81 Aligned_cols=50 Identities=34% Similarity=0.949 Sum_probs=44.9
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL 410 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 410 (447)
++.+|+||++.+.+ ..+||+|.||..||.+|++.+.+||+||.++.....
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 46789999999877 789999999999999999999999999999986543
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.27 E-value=4.5e-13 Score=115.66 Aligned_cols=50 Identities=30% Similarity=0.627 Sum_probs=1.0
Q ss_pred CCceeeeecccccCC-------------C--cceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 357 EDAVCCICLAKYANN-------------D--ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 357 ed~~C~ICL~~y~~~-------------d--~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
+++.|+||+++|.+. + .+..++|+|.||..||++||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 456799999999763 2 2334689999999999999999999999999854
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.1e-12 Score=100.18 Aligned_cols=51 Identities=25% Similarity=0.570 Sum_probs=44.5
Q ss_pred CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215 357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL 410 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 410 (447)
++..|+||++.|.+. ..+ +|+|.||..||.+|++.+.+||+||.++.....
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 467799999999885 454 999999999999999999999999999987543
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.8e-12 Score=98.85 Aligned_cols=50 Identities=30% Similarity=0.646 Sum_probs=43.3
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHh---cCCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK---INASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~---~~~tCPlCR~~I~~~ 408 (447)
.++..|+||++.|.+. ..+||+|.||..||.+|++ .+.+||+||.++...
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4567899999999875 6779999999999999997 466899999998765
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.7e-12 Score=102.27 Aligned_cols=55 Identities=27% Similarity=0.609 Sum_probs=47.1
Q ss_pred CCCceeeeecccccCCCc-ceEeccCCcccHHHHHHHHhcC---CCCCccccccCCCCC
Q 013215 356 GEDAVCCICLAKYANNDE-LRELPCSHFFHKDCVDKWLKIN---ASCPLCKSEVGDTVL 410 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~-lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~I~~~~~ 410 (447)
.++.+|+||++.|.+.+. .+.|||+|.||..||.+|++.+ .+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 346789999999998664 6788999999999999999876 789999999877543
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.3e-12 Score=101.00 Aligned_cols=48 Identities=23% Similarity=0.616 Sum_probs=43.2
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
.++..|+||++.|.++ ..+||+|.||..||.+|++.+.+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3467899999999876 57899999999999999999999999999986
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=7.2e-12 Score=98.81 Aligned_cols=51 Identities=20% Similarity=0.560 Sum_probs=43.4
Q ss_pred CCCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcC--CCCCccccccCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKIN--ASCPLCKSEVGDTV 409 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~ 409 (447)
.++..|+||++.|.++ ..+| |+|.||..||.+|++.+ .+||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3467899999999987 6799 99999999999999865 68999999765443
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=7.8e-12 Score=96.15 Aligned_cols=50 Identities=18% Similarity=0.509 Sum_probs=43.3
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHH-hcCCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL-KINASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~ 408 (447)
.++..|+||++.|.++ ..++|+|.||..||.+|+ +.+.+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3567899999999877 448999999999999999 5677999999998765
No 25
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=97.25 Aligned_cols=55 Identities=22% Similarity=0.515 Sum_probs=45.1
Q ss_pred cCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC--CCCCccccccCCCCCC
Q 013215 355 SGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN--ASCPLCKSEVGDTVLG 411 (447)
Q Consensus 355 s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~~ 411 (447)
.....+|+||.+.+..++... .|+|.||..||++||+.+ .+||+||++.......
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred cCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 344567999999999875444 799999999999999887 8999999987755433
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=5.5e-12 Score=111.31 Aligned_cols=48 Identities=27% Similarity=0.860 Sum_probs=43.3
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
+..|+||++.|.++ ..+||+|.||..||.+|++.+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 45699999999876 6899999999999999999999999999998654
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=1.1e-11 Score=106.90 Aligned_cols=55 Identities=24% Similarity=0.622 Sum_probs=48.1
Q ss_pred CCCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215 356 GEDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL 410 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 410 (447)
.++.+|+||++.|.++ +....++|+|.||..||++|++.+.+||+||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 4567899999999865 556889999999999999999999999999999977654
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.6e-11 Score=91.42 Aligned_cols=43 Identities=30% Similarity=0.686 Sum_probs=38.0
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHh---cCCCCCcc
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK---INASCPLC 401 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~---~~~tCPlC 401 (447)
.++..|+||++.|.++ ..+||+|.||..||.+|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999999876 6789999999999999998 56789998
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=95.73 Aligned_cols=51 Identities=29% Similarity=0.627 Sum_probs=44.4
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc------CCCCCccccccCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI------NASCPLCKSEVGDTV 409 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~~ 409 (447)
.++.+|+||++.|.+. ..+||+|.||..||.+|++. ..+||+||..+....
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 3567899999999876 56799999999999999987 889999999988643
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=4.7e-11 Score=95.33 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=44.1
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc------CCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI------NASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~ 408 (447)
.++..|+||++.|.++ ..+||+|.||..||.+|++. ...||+||.++...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3567899999999887 57899999999999999987 77899999998764
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.11 E-value=1.4e-11 Score=97.63 Aligned_cols=50 Identities=28% Similarity=0.580 Sum_probs=43.6
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-------CCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-------NASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-------~~tCPlCR~~I~~~ 408 (447)
.++..|+||++.|.++ ..|||+|.||..||.+|++. ..+||+||.++...
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 3467899999999886 56899999999999999987 67899999998764
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.09 E-value=3.4e-11 Score=95.37 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=44.3
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 408 (447)
.++..|+||++.|.++ ..+||+|.||..||.+|++. +.+||+||.++...
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3467899999999887 67899999999999999987 88999999998765
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=1.4e-11 Score=102.88 Aligned_cols=50 Identities=30% Similarity=0.683 Sum_probs=43.4
Q ss_pred CCceeeeecccccCCCcceE-eccCCcccHHHHHHHHhcC-CCCCccccccCCCC
Q 013215 357 EDAVCCICLAKYANNDELRE-LPCSHFFHKDCVDKWLKIN-ASCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~-LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~~ 409 (447)
++..|+||++.|.++ .. ++|+|.||..||.+|++.+ .+||+||.++....
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 456799999999875 45 8999999999999999887 79999999996644
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.1e-11 Score=88.71 Aligned_cols=43 Identities=30% Similarity=0.869 Sum_probs=37.3
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHH---hcCCCCCcc
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL---KINASCPLC 401 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL---~~~~tCPlC 401 (447)
.++..|+||++.|.++ ..|||+|.||..||.+|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3467899999999887 568999999999999995 467889998
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=6.8e-11 Score=90.56 Aligned_cols=53 Identities=26% Similarity=0.520 Sum_probs=43.1
Q ss_pred CCceeeeecc-cccCCCcc-eEeccCCcccHHHHHHHHhc-CCCCCccccccCCCC
Q 013215 357 EDAVCCICLA-KYANNDEL-RELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~-~y~~~d~l-r~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~ 409 (447)
++..|+||++ .|.++... ..++|+|.||..||++|+.. +.+||+||..+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3567999999 78777543 45799999999999999754 568999999997654
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.06 E-value=3e-11 Score=100.27 Aligned_cols=49 Identities=27% Similarity=0.636 Sum_probs=43.1
Q ss_pred CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
++..|+||++.|.++ ..+ ||+|.||..||.+|++.+.+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 356799999999875 455 8999999999999999999999999998763
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=5.4e-11 Score=102.62 Aligned_cols=54 Identities=24% Similarity=0.634 Sum_probs=46.3
Q ss_pred CCCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 356 GEDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
.++..|+||++.|.+. .....++|+|.||..||++|++.+.+||+||.++.+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3467799999999864 34578899999999999999999999999999987653
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.03 E-value=7.5e-11 Score=99.46 Aligned_cols=49 Identities=27% Similarity=0.756 Sum_probs=43.3
Q ss_pred CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
++..|+||++.|.++ ..+ ||+|.||..||.+|++.+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 456799999999875 455 9999999999999999999999999998764
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.99 E-value=1.1e-10 Score=100.86 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=42.5
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC-CCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA-SCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~ 408 (447)
++..|+||++.|.++ ..+||+|.||..||..|++.+. +||+||.++...
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 100 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRS 100 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCC
Confidence 346799999999977 6789999999999999998544 899999999773
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.99 E-value=2e-10 Score=93.72 Aligned_cols=49 Identities=20% Similarity=0.602 Sum_probs=42.4
Q ss_pred CCCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcC--CCCCccccccCC
Q 013215 356 GEDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKIN--ASCPLCKSEVGD 407 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~I~~ 407 (447)
.++..|+||++.|.++ ..+| |+|.||..||.+|++.+ .+||+||.++..
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence 4568899999999987 6889 99999999999999653 689999999743
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.5e-10 Score=97.65 Aligned_cols=50 Identities=34% Similarity=0.662 Sum_probs=42.7
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC---CCCccccccCCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA---SCPLCKSEVGDTVL 410 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~---tCPlCR~~I~~~~~ 410 (447)
+..|+||++.|.++ ..+||+|.||..||.+|++.+. +||+||.++.....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 45699999999876 4589999999999999998654 89999999887543
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=1.5e-10 Score=104.91 Aligned_cols=49 Identities=31% Similarity=0.705 Sum_probs=41.9
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGD 407 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~ 407 (447)
++..|+||++.|.++ +..+||+|.||..||.+|++. +.+||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 356799999999875 444499999999999999987 8889999999864
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.90 E-value=9.5e-11 Score=99.83 Aligned_cols=49 Identities=27% Similarity=0.693 Sum_probs=42.9
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGD 407 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~ 407 (447)
.++..|+||++.|.++ ..|||+|.||..||.+|++. +.+||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3467899999999876 67899999999999999976 7789999999864
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.90 E-value=2.8e-10 Score=102.12 Aligned_cols=49 Identities=27% Similarity=0.634 Sum_probs=43.0
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC-CCCccccccCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA-SCPLCKSEVGDTV 409 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~~ 409 (447)
+..|+||++.|.++ ..+||+|.||..||..|++... +||+||.++....
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCC
Confidence 46799999999887 5689999999999999998754 8999999998763
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.88 E-value=2e-10 Score=97.96 Aligned_cols=51 Identities=31% Similarity=0.615 Sum_probs=44.3
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVLG 411 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~~ 411 (447)
+..|+||++.|.++ ..+||+|.||..||.+|++. +.+||+||.++......
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 46799999999876 56899999999999999987 78999999999876543
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.88 E-value=3.3e-10 Score=97.13 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=43.5
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC-CCCccccccCCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA-SCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~~ 409 (447)
++..|+||++.|.++ ..++|+|.||..||.+|++.+. +||+||.++....
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 456799999999887 6689999999999999998765 9999999987643
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.85 E-value=5.9e-10 Score=85.71 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=40.9
Q ss_pred CCceeeeecccccCCCcceEe--ccCCc-ccHHHHHHHHhcCCCCCccccccCC
Q 013215 357 EDAVCCICLAKYANNDELREL--PCSHF-FHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
++.+|.||++.+.+. ..+ ||+|. |+.+|+.+|.+.+..||+||++|..
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456799999987665 444 99999 7999999999999999999998853
No 48
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.80 E-value=2e-09 Score=81.94 Aligned_cols=47 Identities=30% Similarity=0.746 Sum_probs=37.6
Q ss_pred CCceeeeecccccCCCcceEeccC--C---cccHHHHHHHHhc--CCCCCccccccC
Q 013215 357 EDAVCCICLAKYANNDELRELPCS--H---FFHKDCVDKWLKI--NASCPLCKSEVG 406 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~--H---~FH~~CId~WL~~--~~tCPlCR~~I~ 406 (447)
+...|.||+++. ++++ .+||+ | .||..||++|+.. +.+||+||+++.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456799999983 3445 69965 4 9999999999964 688999998864
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.1e-09 Score=81.76 Aligned_cols=47 Identities=23% Similarity=0.522 Sum_probs=40.2
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
++..|+||++.|.+. +.|||+|.||..||.+| ..+||+||+.+....
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 456799999999987 78999999999999884 678999999987543
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.77 E-value=2.1e-09 Score=109.99 Aligned_cols=49 Identities=27% Similarity=0.749 Sum_probs=43.6
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCccccccCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGDTV 409 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~ 409 (447)
+.+|+||++.+.+. ..+||+|.||..||..|++ .+.+||+||.++....
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 46899999998765 7899999999999999998 7889999999987754
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.77 E-value=2.8e-09 Score=85.36 Aligned_cols=54 Identities=17% Similarity=0.439 Sum_probs=42.5
Q ss_pred CCCceeeeecccccCCCcceEe--ccCCcccHHHHHHHHh-cCCCCCccccccCCCCC
Q 013215 356 GEDAVCCICLAKYANNDELREL--PCSHFFHKDCVDKWLK-INASCPLCKSEVGDTVL 410 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~L--PC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~~ 410 (447)
.++..|+||++.+...+ ...+ +|+|.||..|+.+|++ .+..||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 35678999999986433 2344 4999999999999884 46789999999987654
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.76 E-value=3.2e-09 Score=86.14 Aligned_cols=50 Identities=8% Similarity=0.128 Sum_probs=45.5
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
.++..|+||++-|.++ ..+||||.|++.||.+|+..+.+||+||.++...
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4578899999999998 7899999999999999999999999999988654
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.73 E-value=5.1e-09 Score=87.65 Aligned_cols=51 Identities=8% Similarity=0.154 Sum_probs=46.4
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
.++..|+||++-|.++ ..+||||.|++.||.+|+..+.+||+||.++....
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 5678899999999998 78999999999999999999999999999987643
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.73 E-value=7.7e-09 Score=86.25 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=46.4
Q ss_pred CCCceeeeecccccCCCcceEeccC-CcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCS-HFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
.++..|+||++-|.++ ..+||+ |.|++.||.+|+..+.+||+||.++....
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 5678899999999998 779999 99999999999998999999999987653
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.71 E-value=2.6e-09 Score=81.77 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=40.2
Q ss_pred CceeeeecccccCCCcceEe--ccCCc-ccHHHHHHHHhcCCCCCccccccCC
Q 013215 358 DAVCCICLAKYANNDELREL--PCSHF-FHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
+..|.||++...+. ..+ ||+|. |+..|+.+|.+.+.+||+||++|..
T Consensus 7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 45699999987664 445 99998 9999999999988999999999853
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.71 E-value=1.7e-09 Score=95.97 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=42.9
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC-CCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA-SCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~ 408 (447)
.++..|+||++.|.++ ..++|+|.||..||.+|++... +||+||.++...
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 3567899999999888 6689999999999999998654 899999987543
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=2.1e-09 Score=91.95 Aligned_cols=47 Identities=23% Similarity=0.537 Sum_probs=41.4
Q ss_pred CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
++..|+||++.|.++ ..+ ||+|.||..||..|++ ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 467899999999877 566 9999999999999998 7899999998553
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.67 E-value=2e-09 Score=84.86 Aligned_cols=45 Identities=27% Similarity=0.707 Sum_probs=39.0
Q ss_pred CCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
++..|.||++.+.+. ..+||+|. |+..|+.+| .+||+||.++...
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 456799999988765 78899999 999999998 8899999988653
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.64 E-value=3.7e-09 Score=105.77 Aligned_cols=51 Identities=29% Similarity=0.744 Sum_probs=40.1
Q ss_pred CCceeeeecccccCCCcc----e-EeccCCcccHHHHHHHHhcC-----------CCCCccccccCC
Q 013215 357 EDAVCCICLAKYANNDEL----R-ELPCSHFFHKDCVDKWLKIN-----------ASCPLCKSEVGD 407 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~l----r-~LPC~H~FH~~CId~WL~~~-----------~tCPlCR~~I~~ 407 (447)
+..+|+||++.+.++.++ . -.+|+|.||..||.+||+.. .+||.||++|..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456799999999884332 2 24599999999999999752 469999998864
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=3.4e-08 Score=76.80 Aligned_cols=48 Identities=27% Similarity=0.656 Sum_probs=39.8
Q ss_pred cCCCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 355 SGEDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 355 s~ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
..++..|.||++...+ +..+||+|. |+..|+.. ...||+||.+|....
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 3456789999998765 488999999 99999984 578999999987753
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=8.8e-09 Score=81.27 Aligned_cols=45 Identities=27% Similarity=0.710 Sum_probs=38.0
Q ss_pred CCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
++.+|.||++.+.+. ..+||+|. |+..|+.+ ...||+||.++...
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 456799999998775 67899999 99999964 47899999998664
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.52 E-value=1.9e-08 Score=91.19 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=43.2
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC-CCCCccccccCCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN-ASCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~~ 409 (447)
++..|+||++.|.++ ..++|+|.|+..||.+|++.+ .+||+||.++....
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 457899999999887 568999999999999999764 49999999987653
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=4.7e-08 Score=94.35 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=43.6
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 408 (447)
.++..|+||++-|.++ ..+||+|.|++.||.+|+.. ..+||+||.++...
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 4567899999999998 78999999999999999976 45599999998654
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=4.2e-08 Score=80.87 Aligned_cols=49 Identities=18% Similarity=0.472 Sum_probs=41.4
Q ss_pred CCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcC------CCCCc--cccc-cCCC
Q 013215 357 EDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKIN------ASCPL--CKSE-VGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~------~tCPl--CR~~-I~~~ 408 (447)
++..|+||++-|.++ ..+| |+|.|++.||.+|+..+ .+||+ |+.. +...
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 467799999999988 6786 99999999999999764 58999 9877 5543
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=1.1e-07 Score=78.07 Aligned_cols=48 Identities=23% Similarity=0.650 Sum_probs=39.5
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--------CCCCCc--cccc
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--------NASCPL--CKSE 404 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--------~~tCPl--CR~~ 404 (447)
+..+|.||+++|..++-+..++|+|.|+.+|+..+++. ..+||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35679999999987765555689999999999999953 247999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.32 E-value=5.8e-08 Score=77.67 Aligned_cols=45 Identities=29% Similarity=0.722 Sum_probs=38.4
Q ss_pred CceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
+..|.||++.+.+. ..+||+|. |+..|+..| ..||+||.++....
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence 45799999987664 78999999 999999887 48999999998753
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.28 E-value=2.2e-07 Score=85.68 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=43.6
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC-CCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN-ASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~ 408 (447)
+++..|+||++-|.++ ..+||||.|+..||.+|+..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4567899999999998 678999999999999999764 5799999988654
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.16 E-value=2.3e-07 Score=93.87 Aligned_cols=46 Identities=26% Similarity=0.764 Sum_probs=39.9
Q ss_pred CCCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
.++..|+||++.+.+. ..|||+|. ||..|+..| ..||+||.+|...
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 4567899999998775 78899999 999999988 7899999998653
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.16 E-value=4.1e-07 Score=69.27 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=43.8
Q ss_pred ceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCCCCC
Q 013215 359 AVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLG 411 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~ 411 (447)
..|+||++-+.++ ..+ +|+|.|-+.||.+||+.+.+||+++.++......
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 4699999999987 566 8999999999999999889999999998766544
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.99 E-value=1.6e-06 Score=84.03 Aligned_cols=52 Identities=25% Similarity=0.498 Sum_probs=43.0
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC--CCCCc--cccccCCCC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN--ASCPL--CKSEVGDTV 409 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~--~tCPl--CR~~I~~~~ 409 (447)
..+..|+||++-|.++ |+.+.|||.|++.||.+|++.+ .+||+ ||..+....
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 3467899999999887 4556899999999999999764 57999 999886544
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.85 E-value=5.4e-06 Score=68.80 Aligned_cols=46 Identities=30% Similarity=0.502 Sum_probs=37.5
Q ss_pred eeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCccccccCCC
Q 013215 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGDT 408 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~ 408 (447)
|.+|--.+.. ..|.+||+|+|+.+|+..|.+ ...+||.|+.+|..-
T Consensus 4 C~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp CTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred cCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 6666555443 469999999999999999985 478899999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.51 E-value=4.1e-05 Score=73.52 Aligned_cols=50 Identities=26% Similarity=0.578 Sum_probs=40.2
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC--CCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA--SCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~--tCPlCR~~I~~~ 408 (447)
.-.+|.||.+-...|..... |+|.||..|+.+|++.+. +||.|+.+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~--C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSS--SCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccCc--cChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 35679999998887744332 999999999999997654 899999976554
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.67 E-value=0.021 Score=46.64 Aligned_cols=47 Identities=21% Similarity=0.641 Sum_probs=38.3
Q ss_pred ceeeeecccccCCCcceEecc-CCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215 359 AVCCICLAKYANNDELRELPC-SHFFHKDCVDKWLKINASCPLCKSEVGDTVL 410 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC-~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 410 (447)
.-|-.|+-+. . ..+.| .|+++..|+...|.....||+|+.++...-.
T Consensus 29 ~nCKsCWf~~--k---~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 29 QFCKSCWFEN--K---GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCSSCSCC--S---SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred ccChhhcccc--C---CeeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 4499998553 3 35667 5999999999999999999999999987643
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.58 E-value=0.031 Score=42.84 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=33.0
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC----CCCccccccCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA----SCPLCKSEVGD 407 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~----tCPlCR~~I~~ 407 (447)
.+.+|.||.+ .++.+.=--|...||..|++..|.... .||.|+.+..+
T Consensus 11 ~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 11 PGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp TTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 4567999964 233222222789999999999886543 59999876543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.84 E-value=0.067 Score=43.52 Aligned_cols=35 Identities=17% Similarity=0.423 Sum_probs=27.0
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHH
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKW 391 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~W 391 (447)
++..|.||+++|.......-++|+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 45679999987644433334899999999999984
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.54 E-value=0.18 Score=37.86 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=33.4
Q ss_pred CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHh-----cCCCCCcccccc
Q 013215 357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLK-----INASCPLCKSEV 405 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~-----~~~tCPlCR~~I 405 (447)
++..|.||...|.++.....= -|..-||..|+.--.. ..-.||.|+..-
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 456799999998655433222 3889999999864321 345699998643
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.18 E-value=0.68 Score=37.09 Aligned_cols=34 Identities=21% Similarity=0.662 Sum_probs=24.2
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHH
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKW 391 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~W 391 (447)
.|..|.|| +.|..++.+.---|+-+||..|+.+-
T Consensus 14 ~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcc-ccccccceeccccccccccHhhcccc
Confidence 57789998 55666533222226899999999996
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=82.21 E-value=0.23 Score=38.42 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=32.1
Q ss_pred CceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhc----CCCCCccccccCC
Q 013215 358 DAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKI----NASCPLCKSEVGD 407 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~----~~tCPlCR~~I~~ 407 (447)
+..|.||-.... ++.+..= -|.--||..|+..-+.. .-.||.|+..+.+
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 455889987753 3222222 27899999999764432 3459999877654
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=78.15 E-value=0.55 Score=35.02 Aligned_cols=45 Identities=24% Similarity=0.581 Sum_probs=29.9
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----CCCCCccccc
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----NASCPLCKSE 404 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~ 404 (447)
++..|.||... ++.+.---|.-.||..|++.=+.. .-.||.|+..
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 46679999762 322222237789999999875533 3359999754
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=75.85 E-value=0.37 Score=43.71 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=31.0
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC----CCCCcccccc
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN----ASCPLCKSEV 405 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~I 405 (447)
++..|.+|-.. |+.+.-=-|.-.||..|++.-|... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999743 4322222277999999998877542 3599998654
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.66 E-value=0.62 Score=33.18 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=27.3
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhc----CCCCCcccc
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----NASCPLCKS 403 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~ 403 (447)
.|.||...-..++-+.=--|...||..|++.=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888765433322222237899999999754433 224999964
No 82
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.18 E-value=3.5 Score=33.37 Aligned_cols=48 Identities=29% Similarity=0.650 Sum_probs=28.3
Q ss_pred CCceeeeecccccCCCcceEec--cC-CcccHHHHHHHHhc----CCCCCccccccCC
Q 013215 357 EDAVCCICLAKYANNDELRELP--CS-HFFHKDCVDKWLKI----NASCPLCKSEVGD 407 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LP--C~-H~FH~~CId~WL~~----~~tCPlCR~~I~~ 407 (447)
++...|||-..+. ++-+.-=- |. .-||..||. |.. +-.||.|+..-.+
T Consensus 34 ~e~~yCiC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 34 NEPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CCCBCSTTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CCCcEEECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 3444559987653 32111111 44 579999997 433 3459999865443
No 83
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.92 E-value=0.87 Score=35.27 Aligned_cols=48 Identities=29% Similarity=0.519 Sum_probs=30.9
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHH---------hcCCCCCccccccCC
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWL---------KINASCPLCKSEVGD 407 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL---------~~~~tCPlCR~~I~~ 407 (447)
.-|||...+..+.-+.---|..-||..|+.--. .....||.|+..-.+
T Consensus 17 ~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 17 LYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 445998887643322222388999999984211 246789999865443
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=71.61 E-value=0.54 Score=35.08 Aligned_cols=48 Identities=21% Similarity=0.438 Sum_probs=31.1
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----CCCCCccccccCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----NASCPLCKSEVGD 407 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~I~~ 407 (447)
.+..|.||-. .++.+.---|...||..|+..=|.. .-.||.|+....+
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred CCCcCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 3566999974 2332222237899999999865543 2349999876544
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.87 E-value=0.37 Score=35.29 Aligned_cols=45 Identities=33% Similarity=0.714 Sum_probs=29.1
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC----CCCCcccc
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN----ASCPLCKS 403 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~ 403 (447)
.++..|.||-.. ++.+.---|...||..|++.=|... -.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346679999863 3322222378999999998655432 24888864
No 86
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=68.38 E-value=1.2 Score=40.76 Aligned_cols=47 Identities=21% Similarity=0.586 Sum_probs=33.0
Q ss_pred eeeeecccccCCCc---ceEe-ccCCcccHHHHHH------HHh-----cCCCCCccccccC
Q 013215 360 VCCICLAKYANNDE---LREL-PCSHFFHKDCVDK------WLK-----INASCPLCKSEVG 406 (447)
Q Consensus 360 ~C~ICL~~y~~~d~---lr~L-PC~H~FH~~CId~------WL~-----~~~tCPlCR~~I~ 406 (447)
.|+||...|.+++. ...= -|..-||..|+.- =++ ..-.||.|+..-.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 49999999998863 2232 2889999999742 111 1568999987643
No 87
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=65.77 E-value=2.3 Score=48.00 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=46.2
Q ss_pred cCCCceeeeecccccCCCcceEeccC-CcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215 355 SGEDAVCCICLAKYANNDELRELPCS-HFFHKDCVDKWLKINASCPLCKSEVGDTVL 410 (447)
Q Consensus 355 s~ed~~C~ICL~~y~~~d~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 410 (447)
-+++..|+|-++-+.|+ ..+|-+ +.|-+.+|.+||..+.+||.=|.++.....
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 45678899999999999 789987 589999999999999999999999876543
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=65.49 E-value=0.82 Score=34.58 Aligned_cols=46 Identities=20% Similarity=0.478 Sum_probs=30.2
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----CCCCCcccccc
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----NASCPLCKSEV 405 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~I 405 (447)
++..|.||-.. ++.+.-=-|.-.||..|+..=|.. .-.||.|+..-
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 46779999853 332222237889999999865543 23499997643
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.49 E-value=1 Score=37.35 Aligned_cols=46 Identities=26% Similarity=0.536 Sum_probs=29.3
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----CCCCCccc
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----NASCPLCK 402 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR 402 (447)
++..|.||.+.-+..+.+.=-.|...||..|++..+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46779999876322222333347899999999887642 23466654
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.75 E-value=0.89 Score=36.82 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=32.2
Q ss_pred CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----CCCCCccccccC
Q 013215 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----NASCPLCKSEVG 406 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~I~ 406 (447)
.++..|.||...-..++.+.-=-|...||..|+..=|.. .=.||.|+....
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCccc
Confidence 456779999876433222211227899999999754433 224999987543
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=62.93 E-value=0.38 Score=35.66 Aligned_cols=49 Identities=29% Similarity=0.612 Sum_probs=31.8
Q ss_pred CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----CCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----NASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~I~~~ 408 (447)
.+..|.||... ++-+.---|.-.||..|+..=|.. .-.||.|+....+.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 35679999763 332222237899999999865543 23499997765543
No 92
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.90 E-value=4.3 Score=31.57 Aligned_cols=47 Identities=32% Similarity=0.627 Sum_probs=30.1
Q ss_pred eeeeecccccCCCcceE-eccCCcccHHHHHHHHh-----cCCCCCccccccC
Q 013215 360 VCCICLAKYANNDELRE-LPCSHFFHKDCVDKWLK-----INASCPLCKSEVG 406 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~-LPC~H~FH~~CId~WL~-----~~~tCPlCR~~I~ 406 (447)
..|||...+.++..... --|..-||..|+.-=-. ....||.|+..-.
T Consensus 13 ~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 35599988864433222 23889999999853211 3556999987543
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=62.33 E-value=2.6 Score=34.00 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=31.1
Q ss_pred cCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----CCCCCccccc
Q 013215 355 SGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----NASCPLCKSE 404 (447)
Q Consensus 355 s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~ 404 (447)
...+..|.+|... ++.+.---|.-.||..|+++=|.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999854 332222226788999999776644 2349999854
No 94
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=62.29 E-value=1.6 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=28.9
Q ss_pred eeeeecccccCCCcceEe--ccCCcccHHHHHHHH----hcCCCCCccc
Q 013215 360 VCCICLAKYANNDELREL--PCSHFFHKDCVDKWL----KINASCPLCK 402 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~L--PC~H~FH~~CId~WL----~~~~tCPlCR 402 (447)
.|+||...|.+++....= -|.--||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 388999998665433332 478899999975321 3567799985
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=62.20 E-value=2 Score=34.42 Aligned_cols=52 Identities=25% Similarity=0.447 Sum_probs=32.3
Q ss_pred CCCceeeeeccccc-CCCcceEe-ccCCcccHHHHHHHH--hcCCCCCccccccCC
Q 013215 356 GEDAVCCICLAKYA-NNDELREL-PCSHFFHKDCVDKWL--KINASCPLCKSEVGD 407 (447)
Q Consensus 356 ~ed~~C~ICL~~y~-~~d~lr~L-PC~H~FH~~CId~WL--~~~~tCPlCR~~I~~ 407 (447)
.++..|.||...-. +++.+..= -|.-.||..|+..=+ +..-.||.|+.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 45778999987542 22222222 277899999997532 123349999876544
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=61.13 E-value=3.5 Score=31.65 Aligned_cols=42 Identities=33% Similarity=0.769 Sum_probs=26.4
Q ss_pred CceeeeecccccCCCcceEec-----cC-CcccHHHHHHHHhc----CCCCCccccccC
Q 013215 358 DAVCCICLAKYANNDELRELP-----CS-HFFHKDCVDKWLKI----NASCPLCKSEVG 406 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LP-----C~-H~FH~~CId~WL~~----~~tCPlCR~~I~ 406 (447)
+..| ||-.... ++ .+- |. .-||..|+. |.. +-.||.|+..-.
T Consensus 16 ~~~C-~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 16 PTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCS-TTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCEE-ECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 3345 8987542 42 333 44 589999997 533 335999976543
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=60.65 E-value=3.5 Score=31.14 Aligned_cols=33 Identities=21% Similarity=0.563 Sum_probs=24.4
Q ss_pred CCceeeeecccccCCCcceEe--ccCCcccHHHHH
Q 013215 357 EDAVCCICLAKYANNDELREL--PCSHFFHKDCVD 389 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L--PC~H~FH~~CId 389 (447)
....|.+|...|.+++..+.- -|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 456799999999877544443 588999999974
No 98
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=59.52 E-value=1 Score=41.65 Aligned_cols=44 Identities=25% Similarity=0.503 Sum_probs=30.4
Q ss_pred CCceeeeecccccCCCcceEec---cCCcccHHHHHHHHhcC----CCCCccccccC
Q 013215 357 EDAVCCICLAKYANNDELRELP---CSHFFHKDCVDKWLKIN----ASCPLCKSEVG 406 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~LP---C~H~FH~~CId~WL~~~----~tCPlCR~~I~ 406 (447)
.+..|.+|-.. |+ .|- |...||..|+++-|... -.||.|+..-.
T Consensus 6 ~~~~C~~C~~~---g~---ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD---LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC---EE---EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC---Cc---eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 35669999743 32 333 67999999998877543 35999986543
No 99
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.71 E-value=1 Score=34.54 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=30.4
Q ss_pred ceeeeecccccCCCcceEe-ccCCcccHHHHHHHH----hcCCCCCccccccCC
Q 013215 359 AVCCICLAKYANNDELREL-PCSHFFHKDCVDKWL----KINASCPLCKSEVGD 407 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL----~~~~tCPlCR~~I~~ 407 (447)
..| ||-..+.+++....= -|..-||..|+.--- .....||.|+..-.+
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 447 798877666433222 388899999985421 234569999865433
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=56.34 E-value=2 Score=35.75 Aligned_cols=44 Identities=27% Similarity=0.566 Sum_probs=28.0
Q ss_pred eeeeecccccCCCcceEec-cCCcccHHHHHHHHhc----CCCCCcccc
Q 013215 360 VCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKI----NASCPLCKS 403 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~----~~tCPlCR~ 403 (447)
.|.||...-.+++.+..=- |...||..|++.=|.. .=.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5778876432322222222 7899999999876643 235999975
No 101
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=56.02 E-value=38 Score=27.26 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=37.6
Q ss_pred Cceeeeeccccc---CCCcceE-eccCCcccHHHHHHHH-hcCCCCCccccccCCCCCCC
Q 013215 358 DAVCCICLAKYA---NNDELRE-LPCSHFFHKDCVDKWL-KINASCPLCKSEVGDTVLGS 412 (447)
Q Consensus 358 d~~C~ICL~~y~---~~d~lr~-LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~~~~ 412 (447)
...|.||=++.. +++.... --|+--.++.|.+-=. +.++.||-||.........+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCC
Confidence 457999998864 3332211 2266678899987655 45888999999998664443
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=53.78 E-value=2.6 Score=34.40 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=29.0
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc---CCCCCcccc
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI---NASCPLCKS 403 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~ 403 (447)
|.+-|||-....++.-+.-=-|.--||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrCiC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCCTTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEeECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3344489877666533322237899999998652221 346999974
No 103
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.77 E-value=3.3 Score=32.17 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=29.6
Q ss_pred ceeeeecccccCCCcceEe--ccCCcccHHHHHHHH---------hcCCCCCccccccCC
Q 013215 359 AVCCICLAKYANNDELREL--PCSHFFHKDCVDKWL---------KINASCPLCKSEVGD 407 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~L--PC~H~FH~~CId~WL---------~~~~tCPlCR~~I~~ 407 (447)
..| ||-....++.-+.-= -|..-||..|+.-=- ..+-.||.|+..-.+
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred EEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 345 898775444222222 588999999985311 125569999876544
No 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=51.06 E-value=2.7 Score=37.36 Aligned_cols=47 Identities=23% Similarity=0.526 Sum_probs=30.3
Q ss_pred CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHH-----hcCCCCCccccc
Q 013215 357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWL-----KINASCPLCKSE 404 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL-----~~~~tCPlCR~~ 404 (447)
++..| ||...+.++.....= -|.--||..|+.--- ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34557 999887644332222 378999999985211 235579999864
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.37 E-value=1.2 Score=35.73 Aligned_cols=52 Identities=19% Similarity=0.535 Sum_probs=34.1
Q ss_pred CCceeeeecccccCC-CcceEe-ccCCcccHHHHHHHHh--------cCCCCCccccccCCC
Q 013215 357 EDAVCCICLAKYANN-DELREL-PCSHFFHKDCVDKWLK--------INASCPLCKSEVGDT 408 (447)
Q Consensus 357 ed~~C~ICL~~y~~~-d~lr~L-PC~H~FH~~CId~WL~--------~~~tCPlCR~~I~~~ 408 (447)
++..|.||...-... +.+..= -|...||..|++.=|. ..=.||.|+....+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 467799998764322 222222 2789999999987553 133599998776544
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=50.36 E-value=5.5 Score=29.59 Aligned_cols=50 Identities=24% Similarity=0.550 Sum_probs=31.9
Q ss_pred CCCceeeeecccccCC-CcceE-eccCCcccHHHHHHHHh-------cCCCCCcccccc
Q 013215 356 GEDAVCCICLAKYANN-DELRE-LPCSHFFHKDCVDKWLK-------INASCPLCKSEV 405 (447)
Q Consensus 356 ~ed~~C~ICL~~y~~~-d~lr~-LPC~H~FH~~CId~WL~-------~~~tCPlCR~~I 405 (447)
.++..|.||....... ..+.. --|.-.||..|+..=|. ..-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4567899999875432 22222 22789999999886432 234599997543
No 107
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=49.26 E-value=2.5 Score=38.54 Aligned_cols=44 Identities=30% Similarity=0.561 Sum_probs=29.3
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----CCCCCccccc
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----NASCPLCKSE 404 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~ 404 (447)
+..|.+|... ++.+.---|.-.||..|++.=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3459999743 443333337799999999764433 2359999866
No 108
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=47.37 E-value=8.9 Score=38.68 Aligned_cols=48 Identities=17% Similarity=0.374 Sum_probs=31.0
Q ss_pred ceeeeecccccCCCcceEeccCCc--ccHHHHHHHHhc--CCCCCccccccCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHF--FHKDCVDKWLKI--NASCPLCKSEVGDT 408 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~--FH~~CId~WL~~--~~tCPlCR~~I~~~ 408 (447)
..|+|-+..+..+ +|-..|.|+ |-.+=+-...++ .-.||+|...+...
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 4588887777665 788889997 333322222222 44699999887443
No 109
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=46.57 E-value=2.6 Score=31.19 Aligned_cols=40 Identities=30% Similarity=0.776 Sum_probs=25.2
Q ss_pred CceeeeecccccCCCcceEec-----cC-CcccHHHHHHHHhc----CCCCCcccc
Q 013215 358 DAVCCICLAKYANNDELRELP-----CS-HFFHKDCVDKWLKI----NASCPLCKS 403 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LP-----C~-H~FH~~CId~WL~~----~~tCPlCR~ 403 (447)
+...+||-... .++ .+- |. .-||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC~C~~~~-~g~---mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYCLCHQVS-YGE---MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEETTTTEEC-CSE---EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEEECCCCC-CCC---eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34455998764 242 233 44 589999997 433 335999975
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=46.53 E-value=13 Score=30.69 Aligned_cols=45 Identities=24% Similarity=0.529 Sum_probs=27.1
Q ss_pred Cceeeeeccccc-----CCCcc-eEeccCCcccHHHHHHH------H-hcCCCCCccc
Q 013215 358 DAVCCICLAKYA-----NNDEL-RELPCSHFFHKDCVDKW------L-KINASCPLCK 402 (447)
Q Consensus 358 d~~C~ICL~~y~-----~~d~l-r~LPC~H~FH~~CId~W------L-~~~~tCPlCR 402 (447)
...|.+|+..-. +++++ .=--|...||..|+..+ + +..=.||-||
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 456999987631 22223 23338899999999532 2 2344577775
No 111
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=45.16 E-value=10 Score=38.04 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=32.0
Q ss_pred ceeeeecccccCCCcceEeccCCc--ccHHHHHHHHhc--CCCCCccccccCCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHF--FHKDCVDKWLKI--NASCPLCKSEVGDTV 409 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~--FH~~CId~WL~~--~~tCPlCR~~I~~~~ 409 (447)
..|+|-+..+..+ +|-..|.|+ |-..=+-...+. .-.||+|...+....
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 4588887777665 788889997 443333333233 345999999886433
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=44.88 E-value=6.8 Score=32.28 Aligned_cols=50 Identities=18% Similarity=0.434 Sum_probs=34.4
Q ss_pred CceeeeecccccCCCcceEe--ccCCcccHHHHHHHH----h------cCCCCCccccccCC
Q 013215 358 DAVCCICLAKYANNDELREL--PCSHFFHKDCVDKWL----K------INASCPLCKSEVGD 407 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~L--PC~H~FH~~CId~WL----~------~~~tCPlCR~~I~~ 407 (447)
...|.||...|.+......= -|.--||..|+.-=- + ..-.||.|+..-..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 35699999999776554443 378999999974211 0 34569999876443
No 113
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=43.96 E-value=2 Score=33.73 Aligned_cols=26 Identities=35% Similarity=0.795 Sum_probs=18.7
Q ss_pred cCCcccHHHHHHHHhc----C-CCCCccccc
Q 013215 379 CSHFFHKDCVDKWLKI----N-ASCPLCKSE 404 (447)
Q Consensus 379 C~H~FH~~CId~WL~~----~-~tCPlCR~~ 404 (447)
|...||..|++.-|.. . =.||.|+.+
T Consensus 47 C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 47 CDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 6789999999876643 2 359999864
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=42.10 E-value=11 Score=31.39 Aligned_cols=47 Identities=21% Similarity=0.481 Sum_probs=29.9
Q ss_pred CCceeeeecccccCCCcceEe---ccCCcccHHHHHHHHhcC----CCCCccccccCCCC
Q 013215 357 EDAVCCICLAKYANNDELREL---PCSHFFHKDCVDKWLKIN----ASCPLCKSEVGDTV 409 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L---PC~H~FH~~CId~WL~~~----~tCPlCR~~I~~~~ 409 (447)
++..|.+|.+ .+ ++..= -|...||..|+. |... -.||.|+-.+-...
T Consensus 14 ~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 14 HEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 4567999973 23 22222 366899999997 5442 24998876665544
No 115
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=40.81 E-value=3.4 Score=30.57 Aligned_cols=40 Identities=30% Similarity=0.742 Sum_probs=25.0
Q ss_pred CceeeeecccccCCCcceEecc-----C-CcccHHHHHHHHhc----CCCCCcccc
Q 013215 358 DAVCCICLAKYANNDELRELPC-----S-HFFHKDCVDKWLKI----NASCPLCKS 403 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC-----~-H~FH~~CId~WL~~----~~tCPlCR~ 403 (447)
+...+||..... + ..+-| . .-||..|+. |.. +-.||.|+.
T Consensus 9 e~~~C~C~~~~~-g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYCLCHQVSY-G---EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEETTTTEECC-S---EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEEECCCcCC-C---CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 344559987642 3 23333 3 579999997 543 335999964
No 116
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=37.58 E-value=23 Score=28.08 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=27.4
Q ss_pred CceeeeecccccCCCcceEec--cCCcccHHHHHHHHhc
Q 013215 358 DAVCCICLAKYANNDELRELP--CSHFFHKDCVDKWLKI 394 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LP--C~H~FH~~CId~WL~~ 394 (447)
...|.+|.+.+++-. ..+-| =.|.|+..|-+..++.
T Consensus 15 ~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 456999999998863 33434 2599999999998865
No 117
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.99 E-value=4.6 Score=31.49 Aligned_cols=45 Identities=29% Similarity=0.530 Sum_probs=27.1
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhc-----CCCCCccccc
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-----NASCPLCKSE 404 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-----~~tCPlCR~~ 404 (447)
.|.||...=..++.+.==-|...||..|+++=|.. .=.||.|+.+
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccCc
Confidence 68888764222221211127899999999854432 2359998753
No 118
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=36.75 E-value=3.6 Score=31.32 Aligned_cols=45 Identities=18% Similarity=0.486 Sum_probs=27.1
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHH---hcCCCCCcccc
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL---KINASCPLCKS 403 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL---~~~~tCPlCR~ 403 (447)
...| ||-..+..+.-+.---|..-||..|+.--- ...-.||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3446 998876532222222388999999985321 12456888864
No 119
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.79 E-value=33 Score=26.17 Aligned_cols=42 Identities=24% Similarity=0.573 Sum_probs=32.0
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV 409 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 409 (447)
...|.-|-..+.+.+.+. .-+..||.+| .+|-.|+..+....
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 456999999887776554 3478999999 45888988876654
No 120
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.83 E-value=24 Score=26.91 Aligned_cols=49 Identities=27% Similarity=0.478 Sum_probs=29.9
Q ss_pred CCCceeeeecccc-cCCCcceEe-ccCCcccHHHHHHHH--hcCCCCCccccc
Q 013215 356 GEDAVCCICLAKY-ANNDELREL-PCSHFFHKDCVDKWL--KINASCPLCKSE 404 (447)
Q Consensus 356 ~ed~~C~ICL~~y-~~~d~lr~L-PC~H~FH~~CId~WL--~~~~tCPlCR~~ 404 (447)
.++..|.||...- .+++.+..= -|.-.||..|+..=. +..=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3467799998764 222222222 278899999987422 112348888653
No 121
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=31.85 E-value=17 Score=29.79 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=11.1
Q ss_pred cccHHHHHHHHhc
Q 013215 382 FFHKDCVDKWLKI 394 (447)
Q Consensus 382 ~FH~~CId~WL~~ 394 (447)
-||+.|+.+|++-
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999953
No 122
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=31.81 E-value=3.3 Score=31.36 Aligned_cols=46 Identities=28% Similarity=0.521 Sum_probs=27.4
Q ss_pred CCceeeeecccccCCCcceEe---ccCCcccHHHHHHH---Hh-----cCCCCCcccc
Q 013215 357 EDAVCCICLAKYANNDELREL---PCSHFFHKDCVDKW---LK-----INASCPLCKS 403 (447)
Q Consensus 357 ed~~C~ICL~~y~~~d~lr~L---PC~H~FH~~CId~W---L~-----~~~tCPlCR~ 403 (447)
++.+-+||-....++. ...- -|..-||..|+.-- .+ .+-.||.||.
T Consensus 8 e~~v~C~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRCICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECCTTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEeECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3445568976655553 2222 27788999997310 00 1456999974
No 123
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=31.53 E-value=18 Score=29.69 Aligned_cols=12 Identities=42% Similarity=1.085 Sum_probs=10.7
Q ss_pred cccHHHHHHHHh
Q 013215 382 FFHKDCVDKWLK 393 (447)
Q Consensus 382 ~FH~~CId~WL~ 393 (447)
-||+.|+.+|++
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 124
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.43 E-value=20 Score=26.75 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=31.4
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
...|.-|-..+.+++.+. .-+..||.+| .+|-.|+..+...
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCCC
Confidence 356999999988776544 3478999988 4599999888754
No 125
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.47 E-value=23 Score=27.07 Aligned_cols=39 Identities=21% Similarity=0.503 Sum_probs=30.5
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 406 (447)
...|.-|-..+.+++.+..+ +..||.+| .+|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~--~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLAL--DKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEET--TEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEEC--Cccccccc--------CCcCcCCCCcC
Confidence 45699999988877655544 78899998 45999998886
No 126
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=30.35 E-value=7.9 Score=36.44 Aligned_cols=45 Identities=27% Similarity=0.596 Sum_probs=24.1
Q ss_pred eeeeecccccCCCcceEeccCCcccHHHHHHHHhc-----CCCCCccccc
Q 013215 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-----NASCPLCKSE 404 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-----~~tCPlCR~~ 404 (447)
.|.+|-..=..++-+.-=-|...||..|+++=|.. .=.||.|+.+
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 58888764222222211127899999999854432 2349999753
No 127
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=29.57 E-value=36 Score=29.59 Aligned_cols=43 Identities=23% Similarity=0.449 Sum_probs=28.3
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHh-----------cCCCCCcccc
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-----------INASCPLCKS 403 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-----------~~~tCPlCR~ 403 (447)
+..|.+|-+. |+.+--=.|.-.||..||++=|. ..=.||+|+.
T Consensus 63 ~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4569999743 32222223789999999997652 1335999974
No 128
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.98 E-value=13 Score=28.47 Aligned_cols=20 Identities=30% Similarity=0.523 Sum_probs=14.7
Q ss_pred HHHHHhcCCCCCccccccCC
Q 013215 388 VDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 388 Id~WL~~~~tCPlCR~~I~~ 407 (447)
+++||..--.||.||.++.-
T Consensus 1 md~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKL 20 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEE
T ss_pred CChHHHhheeCCCCCCcCeE
Confidence 45677777889999998764
No 129
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=28.91 E-value=15 Score=27.57 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=10.8
Q ss_pred eeeecccccCCCcceEeccCCcccHHH
Q 013215 361 CCICLAKYANNDELRELPCSHFFHKDC 387 (447)
Q Consensus 361 C~ICL~~y~~~d~lr~LPC~H~FH~~C 387 (447)
|.-|-..+..++.+..+ +..||.+|
T Consensus 3 C~~C~~~I~~~~~v~a~--~~~~H~~C 27 (76)
T 1iml_A 3 CPKCDKEVYFAERVTSL--GKDWHRPC 27 (76)
T ss_dssp CTTTSSBCCGGGEEEET--TEEEETTT
T ss_pred CCCCCCEEECceEEEEC--CccccCCC
Confidence 44444444433332222 45555554
No 130
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=28.36 E-value=10 Score=29.07 Aligned_cols=50 Identities=28% Similarity=0.581 Sum_probs=31.4
Q ss_pred CceeeeecccccCCCcceEe-ccCCcccHHHHHHHHh-----cCCCCCccccccCC
Q 013215 358 DAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLK-----INASCPLCKSEVGD 407 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~-----~~~tCPlCR~~I~~ 407 (447)
+..-|||-..|.++.....= -|.--||..|+.---. ..-.||.|+..-.+
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 44577998877544332222 2889999999953211 24569999865433
No 131
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=28.28 E-value=6.4 Score=30.00 Aligned_cols=42 Identities=29% Similarity=0.709 Sum_probs=25.5
Q ss_pred eeeeecccccCCCcceEec---cCCcccHHHHHHHHhc-----CCCCCccccc
Q 013215 360 VCCICLAKYANNDELRELP---CSHFFHKDCVDKWLKI-----NASCPLCKSE 404 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LP---C~H~FH~~CId~WL~~-----~~tCPlCR~~ 404 (447)
.|.||...-..+ ..|- |...||..|++.=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~---~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG---GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC---CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 356666432222 3333 6799999999854432 3359999753
No 132
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.24 E-value=12 Score=28.45 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=16.0
Q ss_pred HHHHHhcCCCCCccccccCCC
Q 013215 388 VDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 388 Id~WL~~~~tCPlCR~~I~~~ 408 (447)
+++||..--.||.||.++.-.
T Consensus 3 md~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEE
T ss_pred CCHHHHHHhCCCCCCCcCeEe
Confidence 356777778899999987543
No 133
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=25.10 E-value=9.5 Score=28.39 Aligned_cols=40 Identities=28% Similarity=0.785 Sum_probs=24.8
Q ss_pred CceeeeecccccCCCcceEec-----cC-CcccHHHHHHHHhc----CCCCCcccc
Q 013215 358 DAVCCICLAKYANNDELRELP-----CS-HFFHKDCVDKWLKI----NASCPLCKS 403 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LP-----C~-H~FH~~CId~WL~~----~~tCPlCR~ 403 (447)
+...+||-... .++ .+- |. .-||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC~C~~~~-~g~---MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYCLCNQVS-YGE---MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEETTTTEEC-CSE---EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEEECCCCC-CCC---eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34455998763 342 222 43 789999997 432 345999975
No 134
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=24.40 E-value=6.3 Score=26.10 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=9.6
Q ss_pred ceeeeecccccCCCc
Q 013215 359 AVCCICLAKYANNDE 373 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~ 373 (447)
..|+||+.++...+.
T Consensus 6 FiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 6 FICPQCMKSLGSADE 20 (34)
T ss_dssp EECTTTCCEESSHHH
T ss_pred cCCcHHHHHcCCHHH
Confidence 457777777665543
No 135
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.81 E-value=9 Score=31.46 Aligned_cols=42 Identities=24% Similarity=0.513 Sum_probs=26.3
Q ss_pred eeeeecccccCCCcceEec---cCCcccHHHHHHHHhc----CCCCCccccc
Q 013215 360 VCCICLAKYANNDELRELP---CSHFFHKDCVDKWLKI----NASCPLCKSE 404 (447)
Q Consensus 360 ~C~ICL~~y~~~d~lr~LP---C~H~FH~~CId~WL~~----~~tCPlCR~~ 404 (447)
.|.+|-..-.+. ..|- |...||..|+++=|+. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~---~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS---KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT---TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC---CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 466776543222 3333 7799999999864433 3359998654
No 136
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.62 E-value=17 Score=22.95 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=8.5
Q ss_pred CCCCCccccccC
Q 013215 395 NASCPLCKSEVG 406 (447)
Q Consensus 395 ~~tCPlCR~~I~ 406 (447)
+.+||+||....
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 457999987554
No 137
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=22.68 E-value=26 Score=25.96 Aligned_cols=41 Identities=27% Similarity=0.639 Sum_probs=28.3
Q ss_pred ceeeeecccccCCCcceEec-cCCcccHHHHHHHH-hcCCCCCcc
Q 013215 359 AVCCICLAKYANNDELRELP-CSHFFHKDCVDKWL-KINASCPLC 401 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL-~~~~tCPlC 401 (447)
..|--|...|.+... ..=| |+++|+.+| |..+ ..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEE-ECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCcc-EECCccCcCcccch-hHHHHhhccCCcCC
Confidence 359999999864322 3334 899999999 3333 455679988
No 138
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.45 E-value=52 Score=24.67 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=29.1
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
...|.-|-..+... ....-+..||.+|. +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 45699999888753 33445899999994 58899888753
No 139
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.20 E-value=24 Score=30.30 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCceeeeeccccc--CCCcceEeccCCcccHHHHH
Q 013215 357 EDAVCCICLAKYA--NNDELRELPCSHFFHKDCVD 389 (447)
Q Consensus 357 ed~~C~ICL~~y~--~~d~lr~LPC~H~FH~~CId 389 (447)
.+..|.+|...|. .+-...-.-|+|.++..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3567999999983 23223334488999988853
No 140
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.57 E-value=68 Score=23.33 Aligned_cols=40 Identities=18% Similarity=0.485 Sum_probs=26.0
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 407 (447)
..|.-|-..+...+.+ ...=+..||.+|. +|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAG-VVALDRVFHVGCF--------VCSTCRAQLRG 45 (72)
T ss_dssp CCCSSSCSCCCSSSCC-EECSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCCccCCCccCCCceE-EEECCCeEcccCC--------cccccCCcCCc
Confidence 4588888777654322 2234778888883 58888888743
No 141
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.54 E-value=1.2e+02 Score=23.27 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=29.5
Q ss_pred CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
...|.-|-..+. ++. ...-+..||.+|. +|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPF--LVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC-SCE--EEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEec-ceE--EEECCccccccCC--------ccCCCCCCCCCC
Confidence 456999998885 333 3345899999984 699999888754
No 142
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.41 E-value=58 Score=23.78 Aligned_cols=41 Identities=17% Similarity=0.392 Sum_probs=29.0
Q ss_pred ceeeeecccccC--CCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 359 AVCCICLAKYAN--NDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 359 ~~C~ICL~~y~~--~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
..|.-|-..+.. ++++ ...-+..||.+|. +|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCCCC
Confidence 459999888875 2222 3336889999984 699999888643
No 143
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.21 E-value=21 Score=26.97 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=29.0
Q ss_pred ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408 (447)
Q Consensus 359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 408 (447)
..|..|-..+.+++.+. .-+..||.+|. +|-.|+.++...
T Consensus 8 ~~C~~C~~~I~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ--CDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEE--ETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEE--eCCcccccccC--------ccCCCCCCCCCC
Confidence 45999988887666443 35788888884 488888887654
No 144
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=20.02 E-value=16 Score=37.74 Aligned_cols=51 Identities=27% Similarity=0.516 Sum_probs=32.9
Q ss_pred CceeeeecccccCCCcceEe-ccCCcccHHHHHHH---H--hcCCCCCccccccCCC
Q 013215 358 DAVCCICLAKYANNDELREL-PCSHFFHKDCVDKW---L--KINASCPLCKSEVGDT 408 (447)
Q Consensus 358 d~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~W---L--~~~~tCPlCR~~I~~~ 408 (447)
....|||-..+.++.....= -|.--||..|+.-= . ..+-.||.|+....+.
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~ 60 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPS 60 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCC
T ss_pred CCeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCc
Confidence 35688999887544332222 38889999998421 1 1345799998765544
Done!