BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013217
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 271/451 (60%), Positives = 340/451 (75%), Gaps = 12/451 (2%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+PE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +
Sbjct: 39 DPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVV 98
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
DE+E LCQ+RAL AF+LD +WGVNVQP SGSPAN VYTA+L+PHDRIMGLDLP GGHL
Sbjct: 99 DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHL 158
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG+M+ +R+S TSI+FESMPY+L+ TGL+DY+ L TA LFRP+LIIAG SAY R
Sbjct: 159 THGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLI 218
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
DY RMR++ D V A L+ DMAHISGLVAA V+ PFK+ D+VTTTTHK+LRG R G+IF+
Sbjct: 219 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFY 278
Query: 245 KK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
+K DP G E+ E IN AVFP LQGGPHNH I +AV LK A +P F+ Y
Sbjct: 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL 338
Query: 296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 355
+V+ N RA+A L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+
Sbjct: 339 QVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTC 398
Query: 356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMN 415
PGD+SA+ PGG+R+G+PA+T+R F E +F + DFI EGV I LE K + +KLQDF +
Sbjct: 399 PGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKLQDFKS 456
Query: 416 FVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
F+ + +A+LR RVE FP+PG
Sbjct: 457 FLLK-DSETSQRLANLRQRVEQFARAFPMPG 486
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/451 (61%), Positives = 339/451 (75%), Gaps = 12/451 (2%)
Query: 7 EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE 66
EV II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG E+IDE
Sbjct: 22 EVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDE 81
Query: 67 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
LETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL+H
Sbjct: 82 LETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTH 141
Query: 127 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY 186
GFMT K+++S TSI+FESMPY+++ TG ++YD LE+ A LF PKLIIAG S Y R+ +Y
Sbjct: 142 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEY 201
Query: 187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 246
R+R+IAD GA LM DMAHISGLVAA VV PF++C VVTTTTHK+LRG R GMIF++K
Sbjct: 202 ARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK 261
Query: 247 -----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A + EFKVYQ++V
Sbjct: 262 GVKSVDPATGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQV 321
Query: 298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
V+NCRAL+ L ELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI NKN+ PG
Sbjct: 322 VANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 381
Query: 358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKLQDFMNF 416
D+SAL P G+R+G+PA+T+RG EK+F +A FIH G+E+TL+ + + L++F
Sbjct: 382 DRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVAATLKEFKER 441
Query: 417 VTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
+ + V LR VE+ + FP+PG+
Sbjct: 442 LAGDKYQAA--VQALREEVESFASLFPLPGL 470
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/457 (60%), Positives = 341/457 (74%), Gaps = 11/457 (2%)
Query: 1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
++ + EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 84
Query: 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 241 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
MIF+++ DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 410
KN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
++F + + V LR VE+ FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 546 bits (1408), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/457 (60%), Positives = 341/457 (74%), Gaps = 11/457 (2%)
Query: 1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
++ + EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 12 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 71
Query: 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 72 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 131
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 132 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 191
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 192 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 251
Query: 241 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
MIF+++ DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 252 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 311
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI N
Sbjct: 312 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 371
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 410
KN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L
Sbjct: 372 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 431
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
++F + + V LR VE+ FP+PG+
Sbjct: 432 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 467
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 546 bits (1407), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/457 (60%), Positives = 341/457 (74%), Gaps = 11/457 (2%)
Query: 1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
++ + EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS+G PG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSQGYPGQRYYGG 84
Query: 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 241 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
MIF+++ DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 410
KN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
++F + + V LR VE+ FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 544 bits (1401), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/457 (60%), Positives = 340/457 (74%), Gaps = 11/457 (2%)
Query: 1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
++ + EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS G PG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGG 84
Query: 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 241 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
MIF+++ DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 410
KN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
++F + + V LR VE+ FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 527 bits (1358), Expect = e-150, Method: Compositional matrix adjust.
Identities = 267/457 (58%), Positives = 333/457 (72%), Gaps = 11/457 (2%)
Query: 1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
++ + EV II KE RQ LELIASENF SRAV+EA+GS L NKYSEG PG+RYYGG
Sbjct: 20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGG 79
Query: 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
E+IDELE LCQKRAL A++LD WGVNVQP SGSPANF VYTA+++PH RI GLDLP
Sbjct: 80 TEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXGLDLPD 139
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
GGHL+HGF T K+++S TSI+FES PY++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 140 GGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCY 199
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
R+ DY R+R+IAD GA L D AHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 200 SRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 259
Query: 241 MIFFKK-----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
IF++K DP G ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct: 260 XIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAXTTEFK 319
Query: 292 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351
+YQ +V++NCRAL+ L ELGYK+V+GGSDNHL+L DLR G DG R EK+L+ SI N
Sbjct: 320 IYQLQVLANCRALSDALTELGYKIVTGGSDNHLILXDLRSKGTDGGRAEKVLEACSIACN 379
Query: 352 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKL 410
KN+ PGDKSAL P G+R+G+PA+T+RG E++F +A FIH G+E+TL+ + + L
Sbjct: 380 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHXATKATL 439
Query: 411 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
++F + + + + VA LR VE + F +PG+
Sbjct: 440 KEFKEKLAG-DEKIQSAVATLREEVENFASNFSLPGL 475
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A A+AYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTH++LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY++G PG+RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPGV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/388 (50%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNK++EG PG+RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/388 (50%), Positives = 256/388 (65%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTH +LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/388 (50%), Positives = 256/388 (65%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NK ++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKATIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/388 (50%), Positives = 256/388 (65%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RY GG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/388 (50%), Positives = 256/388 (65%), Gaps = 16/388 (4%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+R YGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGGCEYV 67
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR
Sbjct: 124 THG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGGMI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N + L
Sbjct: 239 QE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
AS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 293 ASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIRIG+ A+TTRGF +E IA I
Sbjct: 353 TSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 254/383 (66%), Gaps = 15/383 (3%)
Query: 10 EIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET 69
E+I E++RQ + LELIASENF S+ V EAVGS LTNKY+EG PG RYYGG E ID +E+
Sbjct: 13 ELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVES 72
Query: 70 LCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 129
L +RA A F W NVQP SGS AN VY A+++P D +MG+DL GGHL+HG
Sbjct: 73 LAIERAKALFG---AAWA-NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-- 126
Query: 130 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM 189
RV+ + ++ + Y + T L+D + + + A+ RPK+I+AGASAYPR +D+
Sbjct: 127 ---SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAF 183
Query: 190 RQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPV 249
R+IAD VGA L++DMAH +GLVAA + +P Y VVT+TTHK+LRGPRGG+I DP
Sbjct: 184 REIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLI-LSNDPE 242
Query: 250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV 309
LG I+ +FPG+QGGP H I G AV A PEFK Y VV N + LA L
Sbjct: 243 LG----KRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELA 298
Query: 310 ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIR 368
GY++V+GG+DNHL LVDLRP G+ G E+ LD IT+NKN++P D K V GIR
Sbjct: 299 RRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIR 358
Query: 369 IGSPAMTTRGFSEKEFVAIADFI 391
IG+PA+TTRGF+ +E +A+ I
Sbjct: 359 IGTPAITTRGFTPEEMPLVAELI 381
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/404 (47%), Positives = 260/404 (64%), Gaps = 17/404 (4%)
Query: 8 VCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDEL 67
+ E I +E +RQ ++ELIASENF S AVMEA GS LTNKY+EG PG+RYYGG E++D
Sbjct: 14 IAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVT 73
Query: 68 ETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHG 127
E++ RA A F + VNVQP SG AN VY L+ D ++G++L HGGHL+HG
Sbjct: 74 ESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHLTHG 129
Query: 128 FMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYP 187
P V+ + ++ + Y +D+ T ++YD + K A+ +PKLI+AGASAY R D+
Sbjct: 130 --AP---VNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDFK 184
Query: 188 RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD 247
+ ++IAD V A LM+DMAHI+GLVAA + +P +Y D VTTTTHK+LRGPRGGMI K+
Sbjct: 185 KFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE- 243
Query: 248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR 307
E + I+ +FPG+QGGP H I AV A FK YQ +VV N + LA
Sbjct: 244 -----EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEA 298
Query: 308 LVELGYKLVSGGSDNHLVLVDLR-PMGIDGARVEKILDMASITLNKNSVPGDKSA-LVPG 365
L+ G+++VSGG+DNHLV VD++ +G+ G E+ LD IT NKN++P D+ V
Sbjct: 299 LINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTS 358
Query: 366 GIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSK 409
GIR+G+PA TTRGF EK F +A I ++ + + +KL Q +
Sbjct: 359 GIRLGTPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKE 402
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/386 (50%), Positives = 250/386 (64%), Gaps = 15/386 (3%)
Query: 12 ITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 71
I KE ERQ +ELIASEN SRAV++A GS LTNKY+EG PGKRYYGG E+ DE+E L
Sbjct: 24 ILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALA 83
Query: 72 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 131
+R FN NVQP SG+ AN V A+ KP D ++G+ L GGHL+HG
Sbjct: 84 IERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHG---A 136
Query: 132 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQ 191
K +SG +F ++ Y + T L+DYD +E A +P LIIAG SAYPR D+ R R
Sbjct: 137 KPALSGK--WFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRA 194
Query: 192 IADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLG 251
IAD+VGA LM+DMAHI+G++AA A+P ++ VVT+TTHK+LRGPRGG + +
Sbjct: 195 IADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE---- 250
Query: 252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL 311
E+ IN+AVFPGLQGGP H I G AV A + +FK Y ++V++N +AL L
Sbjct: 251 -EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG 309
Query: 312 GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIG 370
G LV+GG+DNHL+LVDLRP G+ GA+VE+ L+ A IT NKN +P D + + GIR+G
Sbjct: 310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLG 369
Query: 371 SPAMTTRGFSEKEFVAIADFIHEGVE 396
+PA TTRGF EF + I E E
Sbjct: 370 TPAGTTRGFGAAEFREVGRLILEVFE 395
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 355 bits (911), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 189/394 (47%), Positives = 256/394 (64%), Gaps = 21/394 (5%)
Query: 4 CNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEY 63
+P++ E++ KE RQ +LE+IASENF RAV++A GS LTNKY+EGLPG+RYYGG E+
Sbjct: 29 VDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEH 88
Query: 64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGH 123
+D +E L + RA A F + NVQP SG+ AN V A++ P +R++GLDL +GGH
Sbjct: 89 VDVVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGH 144
Query: 124 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD 183
L+HG R++ + +E+ Y +D +T L+D D + TA+ FRPK+IIAG SAYPR
Sbjct: 145 LTHGM-----RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRV 199
Query: 184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
D+ R IAD VGA L++DMAH +GLVAA + P + DVV+TT H +L G R G+I
Sbjct: 200 LDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXTLGGGRSGLIV 259
Query: 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 303
K+ + AIN+AVFPG QGGP H I G AV LK A +PEF Q + +S R
Sbjct: 260 GKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARI 313
Query: 304 LASRLV-----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD 358
+A RL+ + G +VSGG+D HLVLVDLR +DG E +L IT+N+N+VP D
Sbjct: 314 IADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPND 373
Query: 359 -KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391
+ +V G+RIG+PA+ TRGF + EF +AD I
Sbjct: 374 PRPPMVTSGLRIGTPALATRGFGDTEFTEVADII 407
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 350 bits (899), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 199/388 (51%), Positives = 258/388 (66%), Gaps = 14/388 (3%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+ E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRYYGG EY+
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYV 71
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++L HGGHL
Sbjct: 72 DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + +PY +D +TG +DY LEK A +PK+II G SAY
Sbjct: 128 THG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVV 181
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GPRGG+I
Sbjct: 182 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 241
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
K EL +N+AVFPG QGGP H I G AV LK A PEFK YQ +V N +A+
Sbjct: 242 KGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAM 298
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
+E GYK+VSGG+DNHL LVDL + G + L A+IT+NKNSVP D KS V
Sbjct: 299 VEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV 358
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIR+G+PA+T RGF E E +A ++
Sbjct: 359 TSGIRVGTPAITRRGFKEAEAKELAGWM 386
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 198/388 (51%), Positives = 258/388 (66%), Gaps = 14/388 (3%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+ E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRY+GG EY+
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYFGGCEYV 71
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++L HGGHL
Sbjct: 72 DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + +PY +D +TG +DY LEK A +PK+II G SAY
Sbjct: 128 THG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVV 181
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GPRGG+I
Sbjct: 182 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 241
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
K EL +N+AVFPG QGGP H I G AV LK A PEFK YQ +V N +A+
Sbjct: 242 KGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAM 298
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
+E GYK+VSGG+DNHL LVDL + G + L A+IT+NKNSVP D KS V
Sbjct: 299 VEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV 358
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIR+G+PA+T RGF E E +A ++
Sbjct: 359 TSGIRVGTPAITRRGFKEAEAKELAGWM 386
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 198/388 (51%), Positives = 258/388 (66%), Gaps = 14/388 (3%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+ E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNK++EG PGKRYYGG EY+
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYPGKRYYGGCEYV 71
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++L HGGHL
Sbjct: 72 DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + +PY +D +TG +DY LEK A +PK+II G SAY
Sbjct: 128 THG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVV 181
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GPRGG+I
Sbjct: 182 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 241
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
K EL +N+AVFPG QGGP H I G AV LK A PEFK YQ +V N +A+
Sbjct: 242 KGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAM 298
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
+E GYK+VSGG+DNHL LVDL + G + L A+IT+NKNSVP D KS V
Sbjct: 299 VEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV 358
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
GIR+G+PA+T RGF E E +A ++
Sbjct: 359 TSGIRVGTPAITRRGFKEAEAKELAGWM 386
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 185/392 (47%), Positives = 248/392 (63%), Gaps = 16/392 (4%)
Query: 1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
++ + E+ ++ KE ERQ + LE IASENFT V E GS LTNKY+EG PGKRYYGG
Sbjct: 6 LEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYGG 65
Query: 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
E++DE+ETL +R FN K+ NVQP SGS AN VY A++ P D+I+G DL H
Sbjct: 66 CEFVDEIETLAIERCKKLFNC---KF-ANVQPNSGSQANQGVYAALINPGDKILGXDLSH 121
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
GGHL+HG +VS + +ES Y + E G +DY+ + + A +PKLI+ GASAY
Sbjct: 122 GGHLTHG-----AKVSSSGKXYESCFYGV-ELDGRIDYEKVREIAKKEKPKLIVCGASAY 175
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
R D+ + R+IAD +GA L D+AHI+GLV A PF Y VV++TTHK+LRGPRGG
Sbjct: 176 ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGG 235
Query: 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300
+I + EL IN+A+FPG+QGGP H I AV K S E+KVY +V +N
Sbjct: 236 IIXTNDE-----ELAKKINSAIFPGIQGGPLXHVIAAKAVGFKFNLSDEWKVYAKQVRTN 290
Query: 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 359
+ LA+ L + +KLVS G+DNHLVL G + L A IT NKN+VPG+ +
Sbjct: 291 AQVLANVLXDRKFKLVSDGTDNHLVLXSFLDREFSGKDADLALGNAGITANKNTVPGEIR 350
Query: 360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391
S + G+R+G+PA+T RGF EKE ++++I
Sbjct: 351 SPFITSGLRLGTPALTARGFKEKEXEIVSNYI 382
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/387 (49%), Positives = 247/387 (63%), Gaps = 14/387 (3%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+ E+ + +EK RQ + +ELIASEN+TS V +A GS LTNKY+EG PGKRYYGG EY+
Sbjct: 15 DAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKRYYGGCEYV 74
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G +L GGHL
Sbjct: 75 DVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGXNLAQGGHL 130
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG +P V+ + + +PY +DES G +DYD K A +PK II G SAY
Sbjct: 131 THG--SP---VNFSGKLYNIVPYGIDES-GKIDYDEXAKLAKEHKPKXIIGGFSAYSGVV 184
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ + R+IAD++GA L +D AH++GL+AA V +P + VVTTTTHK+L GPRGG+I
Sbjct: 185 DWAKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 244
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
K EL +N+AVFP QGGP H I G AV LK A PEFKVYQ +V N +A
Sbjct: 245 KGGDE---ELYKKLNSAVFPSAQGGPLXHVIAGKAVALKEAXEPEFKVYQQQVAKNAKAX 301
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
+ GYK+VSGG++NHL L+DL + G + L A+IT+NKNSVP D KS V
Sbjct: 302 VEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV 361
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADF 390
GIRIGSPA+T RGF E E +A +
Sbjct: 362 TSGIRIGSPAVTRRGFKEAEVKELAGW 388
>pdb|2V0Y|A Chain A, Crystal Structure Of Apo C298s Tryptophanase From E.Coli
Length = 467
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 214 SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV---FP---GLQ 267
+ + +KY D++ + K P GG++ K D V E + V FP GL+
Sbjct: 248 QITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLSVVQEGFPTYGGLE 307
Query: 268 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 327
GG LAV L + ++ Y+ ++ + L L E+G +V + H V
Sbjct: 308 GGAMER----LAVGLYDGMNLDWLAYR---IAQVQYLVDGLEEIG--VVXQQAGGHAAFV 358
Query: 328 D 328
D
Sbjct: 359 D 359
>pdb|2V1P|A Chain A, Crystal Structure Of The Apo Form Of Y74f Mutant E. Coli
Tryptophanase
Length = 467
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 214 SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV---FP---GLQ 267
+ + +KY D++ + K P GG++ K D V E V FP GL+
Sbjct: 248 QITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLXVVQEGFPTYGGLE 307
Query: 268 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 327
GG LAV L + ++ Y+ ++ + L L E+G +V + H V
Sbjct: 308 GGAMER----LAVGLYDGMNLDWLAYR---IAQVQYLVDGLEEIG--VVXQQAGGHAAFV 358
Query: 328 D 328
D
Sbjct: 359 D 359
>pdb|2OQX|A Chain A, Crystal Structure Of The Apo Form Of E. Coli Tryptophanase
At 1.9 A Resolution
Length = 467
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 214 SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV---FP---GLQ 267
+ + +KY D++ + K P GG++ K D V E V FP GL+
Sbjct: 248 QITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLXVVQEGFPTYGGLE 307
Query: 268 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 327
GG LAV L + ++ Y+ ++ + L L E+G +V + H V
Sbjct: 308 GGAMER----LAVGLYDGMNLDWLAYR---IAQVQYLVDGLEEIG--VVXQQAGGHAAFV 358
Query: 328 D 328
D
Sbjct: 359 D 359
>pdb|2C44|A Chain A, Crystal Structure Of E. Coli Tryptophanase
pdb|2C44|B Chain B, Crystal Structure Of E. Coli Tryptophanase
pdb|2C44|C Chain C, Crystal Structure Of E. Coli Tryptophanase
pdb|2C44|D Chain D, Crystal Structure Of E. Coli Tryptophanase
Length = 471
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 214 SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV---FP---GLQ 267
+ + +KY D++ + K P GG++ K D V E V FP GL+
Sbjct: 252 QITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLE 311
Query: 268 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 327
GG LAV L + ++ Y+ ++ + L L E+G +V + H V
Sbjct: 312 GGAMER----LAVGLYDGMNLDWLAYR---IAQVQYLVDGLEEIG--VVCQQAGGHAAFV 362
Query: 328 D 328
D
Sbjct: 363 D 363
>pdb|2AEU|A Chain A, Mj0158, Apo Form
Length = 374
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 223 CDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE 255
D+V T+T K + GPRGG++ KK+ V + +E
Sbjct: 199 ADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIE 231
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 16/158 (10%)
Query: 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD 157
AN ++ +L D I+ L H + + +R + + + RL E+
Sbjct: 117 ANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDXQELEARLKEAREAGA 176
Query: 158 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 217
+L T +F +IA + + +AD AL+ +D +H G V +
Sbjct: 177 RHVLIATDGVFSXDGVIA---------NLKGVCDLADKYDALVXVDDSHAVGFVGENGRG 227
Query: 218 DPFKYCDV------VTTTTHKSLRGPRGGMIFFKKDPV 249
+YCDV +T T K+L G GG +K+ V
Sbjct: 228 -SHEYCDVXGRVDIITGTLGKALGGASGGYTAARKEVV 264
>pdb|1WF9|A Chain A, Solution Structure Of A Novel Beta-Grasp Fold Like Domain
Of Hypothetical Protein (Arabidopsis Thaliana)
Length = 107
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 41 GSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100
G+ L + +GL G + + +L+TL Q + + N+ L+ SP++F
Sbjct: 7 GTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLL-LAKSPSDF 65
Query: 101 EVYTAILKPHDRIMGLDLPHG 121
+T + P+ RI L+L HG
Sbjct: 66 LAFTDMADPNLRISSLNLAHG 86
>pdb|2AEV|A Chain A, Mj0158, Nabh4-Reduced Form
Length = 374
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 223 CDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE 255
D+V T+T + GPRGG++ KK+ V + +E
Sbjct: 199 ADLVVTSTDXLMEGPRGGLLAGKKELVDKIYIE 231
>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|B Chain B, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|C Chain C, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
Length = 189
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 309 VELGYK-LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGI 367
V +G++ ++ G + + VL+ ++ M +DGA VE D + PG L G +
Sbjct: 94 VTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVE---DEVIVAAGATVSPG--KVLESGFV 148
Query: 368 RIGSPAMTTRGFSEKE 383
+G+PA R +EKE
Sbjct: 149 YMGTPAKKVRPITEKE 164
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 1 MQACNPE-VCEIITKEKERQFKSLELIA----SENF-TSRAVMEAVGSCLTNKYSEGLPG 54
+QA P+ V + K E + + ++L+A +F T V EA L G
Sbjct: 8 VQAMKPDAVVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQ-------G 60
Query: 55 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP------LSGSPANFEVYTAILK 108
K Y I EL + ALA EN G++V P + GS A F ++ AIL
Sbjct: 61 KTKYAPPAGIPEL-----REALAEKFRREN--GLSVTPEETIVTVGGSQALFNLFQAILD 113
Query: 109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF 168
P D ++ L P+ +S+ M R G + E++P G V + AI
Sbjct: 114 PGDEVIVLS-PY--WVSYPEMV--RFAGGVVVEVETLP-----EEGFVPDPERVRRAITP 163
Query: 169 RPKLIIAGASAYPRDFDYPR 188
R K ++ + P YP+
Sbjct: 164 RTKALVVNSPNNPTGAVYPK 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,588,060
Number of Sequences: 62578
Number of extensions: 575955
Number of successful extensions: 1387
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 41
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)