Query 013217
Match_columns 447
No_of_seqs 326 out of 2841
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ou5_A Serine hydroxymethyltra 100.0 3E-102 9E-107 747.4 37.8 444 1-447 35-487 (490)
2 2a7v_A Serine hydroxymethyltra 100.0 7.5E-75 2.6E-79 583.5 37.2 443 2-447 36-487 (490)
3 1rv3_A Serine hydroxymethyltra 100.0 2.1E-66 7.3E-71 526.6 41.1 444 3-447 27-480 (483)
4 3h7f_A Serine hydroxymethyltra 100.0 2E-53 6.9E-58 428.0 36.8 403 3-445 28-436 (447)
5 3n0l_A Serine hydroxymethyltra 100.0 1.1E-50 3.8E-55 404.2 41.3 406 2-446 7-413 (417)
6 3gbx_A Serine hydroxymethyltra 100.0 3E-48 1E-52 386.9 37.5 408 2-446 12-420 (420)
7 3ecd_A Serine hydroxymethyltra 100.0 3.6E-47 1.2E-51 379.7 37.8 410 3-445 15-425 (425)
8 2dkj_A Serine hydroxymethyltra 100.0 7.3E-43 2.5E-47 346.6 38.5 401 3-445 6-407 (407)
9 2vi8_A Serine hydroxymethyltra 100.0 2.3E-42 7.9E-47 342.8 37.9 398 3-439 6-404 (405)
10 3nnk_A Ureidoglycine-glyoxylat 100.0 6.3E-30 2.2E-34 253.6 31.4 336 21-398 13-390 (411)
11 3isl_A Purine catabolism prote 100.0 9.2E-30 3.2E-34 252.9 31.5 336 21-398 11-390 (416)
12 3zrp_A Serine-pyruvate aminotr 100.0 4.8E-30 1.7E-34 251.9 28.9 331 22-398 3-363 (384)
13 2dr1_A PH1308 protein, 386AA l 100.0 3.6E-29 1.2E-33 246.0 33.7 333 23-398 22-379 (386)
14 2huf_A Alanine glyoxylate amin 100.0 3.4E-29 1.2E-33 246.9 31.8 336 21-398 19-383 (393)
15 3f0h_A Aminotransferase; RER07 100.0 1.4E-29 4.6E-34 248.3 26.8 334 19-396 17-372 (376)
16 1iug_A Putative aspartate amin 100.0 3E-29 1E-33 243.4 28.8 327 23-397 3-347 (352)
17 3kgw_A Alanine-glyoxylate amin 100.0 5.2E-29 1.8E-33 245.3 30.4 336 21-398 23-388 (393)
18 2yrr_A Aminotransferase, class 100.0 5.5E-29 1.9E-33 241.4 28.0 326 23-396 2-351 (353)
19 1vjo_A Alanine--glyoxylate ami 100.0 2E-28 6.8E-33 241.5 31.5 332 22-395 35-392 (393)
20 4hvk_A Probable cysteine desul 100.0 3.4E-29 1.2E-33 245.4 25.2 336 27-398 7-373 (382)
21 2z9v_A Aspartate aminotransfer 100.0 1.7E-28 5.7E-33 241.9 29.6 330 26-398 14-371 (392)
22 3hbx_A GAD 1, glutamate decarb 100.0 3.4E-28 1.2E-32 247.3 32.2 364 6-399 40-445 (502)
23 1t3i_A Probable cysteine desul 100.0 1.2E-28 4E-33 245.1 28.0 364 4-398 5-413 (420)
24 2ch1_A 3-hydroxykynurenine tra 100.0 3E-28 1E-32 240.5 30.2 334 22-398 19-383 (396)
25 1kmj_A Selenocysteine lyase; p 100.0 3E-28 1E-32 241.0 30.2 346 22-397 24-404 (406)
26 3tqx_A 2-amino-3-ketobutyrate 100.0 1E-28 3.5E-33 244.0 25.9 332 23-397 46-395 (399)
27 1m32_A 2-aminoethylphosphonate 100.0 2.3E-28 7.9E-33 238.2 27.9 331 22-396 5-363 (366)
28 3cai_A Possible aminotransfera 100.0 1.8E-28 6.2E-33 242.9 26.5 341 22-393 27-404 (406)
29 3f9t_A TDC, L-tyrosine decarbo 100.0 1.8E-27 6.2E-32 234.4 31.8 325 28-396 38-396 (397)
30 4eb5_A Probable cysteine desul 100.0 2.7E-28 9.4E-33 239.3 25.0 337 28-399 8-374 (382)
31 1eg5_A Aminotransferase; PLP-d 100.0 1.1E-27 3.9E-32 235.0 29.3 337 30-398 11-376 (384)
32 3lvm_A Cysteine desulfurase; s 100.0 1.2E-27 4.1E-32 238.3 28.9 352 15-400 16-401 (423)
33 2w8t_A SPT, serine palmitoyltr 100.0 1.1E-27 3.9E-32 239.0 28.1 334 23-398 67-415 (427)
34 3ffr_A Phosphoserine aminotran 100.0 6.4E-28 2.2E-32 234.8 25.1 330 21-395 4-361 (362)
35 1elu_A L-cysteine/L-cystine C- 100.0 2.7E-28 9.2E-33 240.1 22.6 337 21-393 16-387 (390)
36 2bkw_A Alanine-glyoxylate amin 100.0 9.4E-28 3.2E-32 235.8 26.3 335 20-396 4-382 (385)
37 3dzz_A Putative pyridoxal 5'-p 100.0 4.9E-28 1.7E-32 238.4 24.1 337 21-397 28-388 (391)
38 1fc4_A 2-amino-3-ketobutyrate 100.0 1.3E-27 4.5E-32 236.3 26.0 333 22-397 47-396 (401)
39 3ly1_A Putative histidinol-pho 100.0 6.3E-27 2.1E-31 227.5 29.9 320 20-397 16-351 (354)
40 3ke3_A Putative serine-pyruvat 100.0 7E-28 2.4E-32 236.7 22.4 311 59-398 29-376 (379)
41 4dq6_A Putative pyridoxal phos 100.0 5.1E-27 1.7E-31 231.1 27.4 348 6-395 19-390 (391)
42 3get_A Histidinol-phosphate am 100.0 1.4E-26 4.7E-31 226.1 29.0 319 20-395 30-364 (365)
43 1bs0_A Protein (8-amino-7-oxon 100.0 3.8E-27 1.3E-31 231.7 25.2 331 22-394 41-383 (384)
44 1b5p_A Protein (aspartate amin 100.0 1.5E-26 5.1E-31 227.7 29.1 332 20-395 31-382 (385)
45 3h14_A Aminotransferase, class 100.0 1.3E-26 4.6E-31 228.4 28.8 339 18-398 29-382 (391)
46 3l8a_A METC, putative aminotra 100.0 3.6E-27 1.2E-31 234.9 24.7 337 20-396 61-420 (421)
47 3kax_A Aminotransferase, class 100.0 8.5E-27 2.9E-31 228.9 26.8 335 20-395 24-382 (383)
48 3euc_A Histidinol-phosphate am 100.0 1.8E-26 6.3E-31 225.4 28.9 320 21-395 31-365 (367)
49 2dgk_A GAD-beta, GADB, glutama 100.0 4.5E-26 1.5E-30 229.1 31.9 363 6-398 26-434 (452)
50 3e9k_A Kynureninase; kynurenin 100.0 3.2E-28 1.1E-32 245.6 16.3 294 70-397 115-460 (465)
51 3dr4_A Putative perosamine syn 100.0 7.8E-28 2.7E-32 237.3 18.4 332 21-395 23-390 (391)
52 3vax_A Putative uncharacterize 100.0 4.2E-28 1.4E-32 239.7 16.4 342 22-396 21-398 (400)
53 1gd9_A Aspartate aminotransfer 100.0 2.4E-26 8.4E-31 226.3 28.6 339 20-397 26-385 (389)
54 3kki_A CAI-1 autoinducer synth 100.0 9.6E-27 3.3E-31 230.9 25.6 321 32-397 74-403 (409)
55 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 9.1E-28 3.1E-32 234.8 17.9 334 21-397 8-369 (371)
56 3p1t_A Putative histidinol-pho 100.0 4.1E-26 1.4E-30 220.1 29.1 323 9-395 5-334 (337)
57 1j32_A Aspartate aminotransfer 100.0 5E-26 1.7E-30 224.0 30.2 335 20-397 30-386 (388)
58 3ffh_A Histidinol-phosphate am 100.0 7.9E-26 2.7E-30 220.5 31.0 317 20-394 32-362 (363)
59 3e77_A Phosphoserine aminotran 100.0 2.6E-27 8.9E-32 230.2 20.0 338 22-397 15-374 (377)
60 1o4s_A Aspartate aminotransfer 100.0 3.9E-26 1.3E-30 225.0 27.5 328 20-396 41-387 (389)
61 3a2b_A Serine palmitoyltransfe 100.0 1.7E-26 5.8E-31 228.2 25.0 333 22-397 45-391 (398)
62 2c0r_A PSAT, phosphoserine ami 99.9 6.6E-27 2.3E-31 228.2 21.4 331 21-396 4-359 (362)
63 3m5u_A Phosphoserine aminotran 99.9 7.1E-27 2.4E-31 226.3 20.5 330 20-397 4-359 (361)
64 1b9h_A AHBA synthase, protein 99.9 6.8E-26 2.3E-30 223.1 27.8 323 32-396 15-386 (388)
65 3qm2_A Phosphoserine aminotran 99.9 6.1E-28 2.1E-32 235.9 12.7 338 22-397 28-384 (386)
66 3mc6_A Sphingosine-1-phosphate 99.9 1.6E-26 5.3E-31 235.3 23.6 328 33-398 77-437 (497)
67 3nra_A Aspartate aminotransfer 99.9 2.5E-26 8.5E-31 227.5 24.4 337 22-397 41-404 (407)
68 2fnu_A Aminotransferase; prote 99.9 8.2E-27 2.8E-31 228.3 20.5 326 28-397 7-371 (375)
69 1c7n_A Cystalysin; transferase 99.9 4E-26 1.4E-30 225.5 25.3 339 20-398 31-393 (399)
70 3g0t_A Putative aminotransfera 99.9 8.3E-26 2.8E-30 226.0 27.9 339 20-396 44-435 (437)
71 2dou_A Probable N-succinyldiam 99.9 4.9E-26 1.7E-30 223.2 24.8 334 20-395 25-375 (376)
72 3hvy_A Cystathionine beta-lyas 99.9 1.8E-26 6.3E-31 228.2 21.8 281 4-318 16-325 (427)
73 1v2d_A Glutamine aminotransfer 99.9 9.1E-26 3.1E-30 221.7 26.5 331 20-398 25-371 (381)
74 3a9z_A Selenocysteine lyase; P 99.9 3.2E-26 1.1E-30 228.7 23.6 351 21-397 18-427 (432)
75 2gb3_A Aspartate aminotransfer 99.9 8E-26 2.7E-30 224.3 26.3 338 20-398 43-402 (409)
76 1u08_A Hypothetical aminotrans 99.9 1.9E-25 6.4E-30 219.8 28.7 348 6-392 17-384 (386)
77 2x5d_A Probable aminotransfera 99.9 1.8E-25 6E-30 222.0 28.5 339 20-398 37-398 (412)
78 3ju7_A Putative PLP-dependent 99.9 1.1E-26 3.8E-31 227.7 19.5 324 31-397 13-374 (377)
79 3cq5_A Histidinol-phosphate am 99.9 9.3E-25 3.2E-29 213.6 33.1 322 22-396 32-366 (369)
80 1yiz_A Kynurenine aminotransfe 99.9 3.2E-25 1.1E-29 221.3 30.2 356 4-396 22-427 (429)
81 2c81_A Glutamine-2-deoxy-scyll 99.9 4.7E-26 1.6E-30 226.6 24.0 335 27-397 9-413 (418)
82 3fdb_A Beta C-S lyase, putativ 99.9 1E-25 3.5E-30 220.8 25.8 333 20-396 23-374 (377)
83 3ele_A Amino transferase; RER0 99.9 2.6E-25 8.8E-30 219.6 28.8 336 20-397 35-395 (398)
84 1c4k_A Protein (ornithine deca 99.9 4.5E-26 1.5E-30 238.8 24.1 302 70-398 177-566 (730)
85 1d2f_A MALY protein; aminotran 99.9 3.1E-25 1.1E-29 218.5 28.6 337 20-397 28-388 (390)
86 2z61_A Probable aspartate amin 99.9 2.4E-25 8.3E-30 217.7 27.5 327 20-396 29-369 (370)
87 1qz9_A Kynureninase; kynurenin 99.9 1.2E-25 4.2E-30 223.2 25.4 325 23-397 30-401 (416)
88 3fvs_A Kynurenine--oxoglutarat 99.9 1.2E-25 4E-30 223.9 25.2 346 18-396 26-420 (422)
89 1mdo_A ARNB aminotransferase; 99.9 5.7E-26 2E-30 223.9 22.6 331 21-398 9-386 (393)
90 1wyu_B Glycine dehydrogenase s 99.9 8.6E-25 2.9E-29 220.9 31.7 300 64-397 105-440 (474)
91 1xi9_A Putative transaminase; 99.9 1.2E-25 4.1E-30 222.8 24.7 339 20-397 38-402 (406)
92 3mad_A Sphingosine-1-phosphate 99.9 7E-25 2.4E-29 224.0 30.2 303 62-398 135-469 (514)
93 3vp6_A Glutamate decarboxylase 99.9 1.8E-25 6.2E-30 227.6 25.6 311 60-395 129-502 (511)
94 3dyd_A Tyrosine aminotransfera 99.9 7E-25 2.4E-29 218.8 29.3 338 21-397 55-423 (427)
95 2oga_A Transaminase; PLP-depen 99.9 7.9E-26 2.7E-30 223.6 22.0 330 21-397 31-395 (399)
96 2o1b_A Aminotransferase, class 99.9 9.8E-26 3.3E-30 223.3 22.5 335 21-396 48-401 (404)
97 2o0r_A RV0858C (N-succinyldiam 99.9 2.4E-25 8.1E-30 221.0 25.2 342 18-397 23-395 (411)
98 3uwc_A Nucleotide-sugar aminot 99.9 1.6E-26 5.4E-31 226.4 16.2 328 22-397 8-370 (374)
99 3i16_A Aluminum resistance pro 99.9 5.6E-26 1.9E-30 224.8 19.9 307 5-347 19-356 (427)
100 1jg8_A L-ALLO-threonine aldola 99.9 1.9E-25 6.5E-30 216.4 23.2 324 22-396 5-344 (347)
101 3frk_A QDTB; aminotransferase, 99.9 6.4E-27 2.2E-31 229.3 12.9 321 29-396 12-366 (373)
102 2bwn_A 5-aminolevulinate synth 99.9 5.4E-25 1.9E-29 217.6 26.7 322 32-396 61-398 (401)
103 1o69_A Aminotransferase; struc 99.9 3.5E-25 1.2E-29 218.6 25.0 324 29-397 7-386 (394)
104 3hdo_A Histidinol-phosphate am 99.9 2.3E-24 7.9E-29 210.0 28.8 316 21-396 27-353 (360)
105 3nyt_A Aminotransferase WBPE; 99.9 4.2E-26 1.4E-30 223.0 16.5 320 24-393 6-359 (367)
106 3b46_A Aminotransferase BNA3; 99.9 3.8E-25 1.3E-29 222.0 23.3 339 19-393 56-442 (447)
107 3e2y_A Kynurenine-oxoglutarate 99.9 1.1E-24 3.7E-29 216.0 25.8 339 20-393 23-408 (410)
108 3jtx_A Aminotransferase; NP_28 99.9 2.3E-24 7.9E-29 212.6 27.6 333 20-395 30-395 (396)
109 2po3_A 4-dehydrase; external a 99.9 1.1E-24 3.7E-29 217.2 25.0 333 24-401 20-389 (424)
110 2zc0_A Alanine glyoxylate tran 99.9 3.7E-24 1.3E-28 212.0 28.6 340 21-397 35-403 (407)
111 2zyj_A Alpha-aminodipate amino 99.9 1.9E-24 6.4E-29 213.5 26.3 338 19-398 31-393 (397)
112 2vyc_A Biodegradative arginine 99.9 4.5E-25 1.5E-29 233.2 23.1 299 70-398 209-605 (755)
113 1v72_A Aldolase; PLP-dependent 99.9 1.3E-24 4.6E-29 210.9 23.6 324 21-397 8-352 (356)
114 1w23_A Phosphoserine aminotran 99.9 1.7E-25 5.7E-30 217.8 17.0 328 21-397 3-359 (360)
115 2r2n_A Kynurenine/alpha-aminoa 99.9 1.2E-23 4.1E-28 209.7 30.8 305 66-396 82-422 (425)
116 3aow_A Putative uncharacterize 99.9 8.3E-24 2.8E-28 212.2 29.7 341 19-397 75-444 (448)
117 4e1o_A HDC, histidine decarbox 99.9 8.3E-25 2.9E-29 221.3 22.1 311 59-397 111-477 (481)
118 3ezs_A Aminotransferase ASPB; 99.9 6.2E-24 2.1E-28 208.1 27.3 326 21-396 24-373 (376)
119 1vp4_A Aminotransferase, putat 99.9 1.1E-24 3.9E-29 217.1 22.4 341 20-398 43-418 (425)
120 1iay_A ACC synthase 2, 1-amino 99.9 7.2E-24 2.5E-28 211.4 27.7 340 21-397 37-426 (428)
121 1bw0_A TAT, protein (tyrosine 99.9 3.3E-24 1.1E-28 213.0 24.9 341 21-397 34-412 (416)
122 3qgu_A LL-diaminopimelate amin 99.9 2.7E-24 9.2E-29 215.9 24.3 341 20-397 69-439 (449)
123 3piu_A 1-aminocyclopropane-1-c 99.9 9.6E-24 3.3E-28 211.0 28.1 346 22-398 40-432 (435)
124 2qma_A Diaminobutyrate-pyruvat 99.9 5.1E-24 1.7E-28 216.6 26.1 334 31-396 111-494 (497)
125 3k40_A Aromatic-L-amino-acid d 99.9 1.2E-24 4E-29 219.8 21.1 312 59-398 106-471 (475)
126 3b8x_A WBDK, pyridoxamine 5-ph 99.9 5.6E-24 1.9E-28 209.6 25.1 321 23-391 4-389 (390)
127 2z67_A O-phosphoseryl-tRNA(SEC 99.9 5.5E-25 1.9E-29 221.3 18.1 301 64-395 131-455 (456)
128 1svv_A Threonine aldolase; str 99.9 2E-24 6.9E-29 209.8 21.5 323 21-396 14-356 (359)
129 3if2_A Aminotransferase; YP_26 99.9 7.5E-24 2.6E-28 212.3 25.5 357 19-398 30-440 (444)
130 2okj_A Glutamate decarboxylase 99.9 2E-23 7E-28 212.6 28.8 308 62-396 128-500 (504)
131 3op7_A Aminotransferase class 99.9 1E-23 3.5E-28 206.5 25.1 288 73-397 70-370 (375)
132 2aeu_A Hypothetical protein MJ 99.9 5.7E-24 2E-28 208.3 23.1 333 8-398 14-371 (374)
133 3jzl_A Putative cystathionine 99.9 2.3E-24 7.8E-29 212.6 20.2 309 6-348 6-340 (409)
134 3rq1_A Aminotransferase class 99.9 1E-23 3.5E-28 209.6 25.1 331 21-398 39-415 (418)
135 3ftb_A Histidinol-phosphate am 99.9 7.1E-23 2.4E-27 199.3 29.4 316 20-396 26-359 (361)
136 3pj0_A LMO0305 protein; struct 99.9 1.5E-24 5E-29 211.1 17.0 332 17-394 10-358 (359)
137 2jis_A Cysteine sulfinic acid 99.9 2.3E-23 8E-28 212.6 26.5 308 62-396 144-513 (515)
138 1fg7_A Histidinol phosphate am 99.9 3.2E-23 1.1E-27 201.7 26.1 309 21-393 30-353 (356)
139 1lc5_A COBD, L-threonine-O-3-p 99.9 5.7E-23 2E-27 200.4 27.3 319 21-397 25-359 (364)
140 2x3l_A ORN/Lys/Arg decarboxyla 99.9 9.6E-25 3.3E-29 218.7 14.7 281 71-397 62-352 (446)
141 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 2.3E-23 7.9E-28 208.4 24.0 321 28-396 37-434 (437)
142 3tcm_A Alanine aminotransferas 99.9 4.2E-23 1.4E-27 209.8 26.3 329 32-398 107-494 (500)
143 2x5f_A Aspartate_tyrosine_phen 99.9 1E-23 3.5E-28 210.5 20.8 337 20-397 47-428 (430)
144 1js3_A DDC;, DOPA decarboxylas 99.9 1.8E-23 6.3E-28 212.0 22.4 330 34-398 88-474 (486)
145 1gc0_A Methionine gamma-lyase; 99.9 5.6E-23 1.9E-27 203.1 25.0 324 22-394 29-397 (398)
146 2fyf_A PSAT, phosphoserine ami 99.9 3.8E-23 1.3E-27 204.2 23.4 325 21-396 40-396 (398)
147 3t18_A Aminotransferase class 99.9 5.3E-23 1.8E-27 204.1 24.4 314 21-376 38-396 (413)
148 3ez1_A Aminotransferase MOCR f 99.9 3.7E-23 1.3E-27 205.9 23.3 340 19-398 24-415 (423)
149 3n75_A LDC, lysine decarboxyla 99.9 2.3E-23 7.9E-28 216.5 21.8 293 70-397 199-559 (715)
150 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.2E-22 4.1E-27 204.3 26.3 330 23-398 45-431 (456)
151 3ht4_A Aluminum resistance pro 99.9 1.2E-23 4.1E-28 209.1 18.2 285 4-317 10-313 (431)
152 3g7q_A Valine-pyruvate aminotr 99.9 3.9E-23 1.3E-27 205.2 21.6 344 20-398 31-413 (417)
153 3ei9_A LL-diaminopimelate amin 99.9 6.3E-23 2.2E-27 204.9 23.1 339 21-394 57-424 (432)
154 1wyu_A Glycine dehydrogenase ( 99.9 6.2E-23 2.1E-27 205.3 22.7 290 65-395 107-437 (438)
155 3ihj_A Alanine aminotransferas 99.9 1.5E-22 5E-27 205.6 25.3 328 32-398 102-493 (498)
156 3ppl_A Aspartate aminotransfer 99.9 7E-23 2.4E-27 204.2 22.4 294 73-398 85-420 (427)
157 3lws_A Aromatic amino acid bet 99.9 4.6E-23 1.6E-27 200.4 19.8 329 24-395 14-356 (357)
158 1pff_A Methionine gamma-lyase; 99.9 6.9E-23 2.4E-27 197.1 19.8 283 72-394 4-330 (331)
159 3ruy_A Ornithine aminotransfer 99.9 5.6E-22 1.9E-26 195.3 26.5 312 32-395 53-391 (392)
160 3d6k_A Putative aminotransfera 99.9 1.3E-22 4.6E-27 201.9 21.2 339 19-398 31-418 (422)
161 2rfv_A Methionine gamma-lyase; 99.9 1.2E-22 4.2E-27 200.6 20.4 283 71-394 69-396 (398)
162 1uu1_A Histidinol-phosphate am 99.9 2.3E-22 8E-27 193.8 21.7 304 21-394 20-334 (335)
163 1qgn_A Protein (cystathionine 99.9 5.6E-22 1.9E-26 197.6 24.9 289 61-396 113-443 (445)
164 2cb1_A O-acetyl homoserine sul 99.9 3E-21 1E-25 191.6 29.9 290 62-393 56-411 (412)
165 3b1d_A Betac-S lyase; HET: PLP 99.8 2.7E-25 9.2E-30 219.2 0.0 336 21-396 32-391 (392)
166 3asa_A LL-diaminopimelate amin 99.9 5.2E-22 1.8E-26 196.2 23.6 331 20-397 33-392 (400)
167 3fkd_A L-threonine-O-3-phospha 99.9 1.2E-21 4E-26 190.0 25.7 313 20-397 15-341 (350)
168 2fq6_A Cystathionine beta-lyas 99.9 1.5E-22 5.2E-27 200.4 19.7 289 60-393 80-413 (415)
169 2eh6_A Acoat, acetylornithine 99.9 1.7E-21 6E-26 190.5 26.8 303 32-394 45-374 (375)
170 1ax4_A Tryptophanase; tryptoph 99.9 4.1E-22 1.4E-26 201.0 22.7 327 34-398 55-441 (467)
171 1e5e_A MGL, methionine gamma-l 99.9 8E-22 2.7E-26 195.1 24.3 290 60-398 60-395 (404)
172 7aat_A Aspartate aminotransfer 99.9 8.2E-22 2.8E-26 194.7 22.0 342 8-395 15-400 (401)
173 3qhx_A Cystathionine gamma-syn 99.9 1.4E-21 4.7E-26 192.6 22.9 289 61-391 65-391 (392)
174 3cog_A Cystathionine gamma-lya 99.9 7.9E-22 2.7E-26 195.0 21.0 288 62-395 67-399 (403)
175 1yaa_A Aspartate aminotransfer 99.9 9.5E-22 3.3E-26 195.0 20.9 328 20-396 29-409 (412)
176 3f6t_A Aspartate aminotransfer 99.9 2.8E-21 9.7E-26 197.7 24.5 338 23-398 106-525 (533)
177 3ndn_A O-succinylhomoserine su 99.9 1.6E-21 5.3E-26 193.2 21.5 289 60-395 79-413 (414)
178 2oat_A Ornithine aminotransfer 99.9 9.1E-21 3.1E-25 189.6 27.0 312 32-396 93-437 (439)
179 1vef_A Acetylornithine/acetyl- 99.9 3.4E-21 1.1E-25 190.0 23.5 313 31-395 61-394 (395)
180 4f4e_A Aromatic-amino-acid ami 99.9 6.7E-22 2.3E-26 196.7 18.6 341 8-395 36-419 (420)
181 1z7d_A Ornithine aminotransfer 99.9 2.8E-20 9.7E-25 185.7 28.8 313 32-397 82-428 (433)
182 1cs1_A CGS, protein (cystathio 99.9 1.4E-20 4.8E-25 185.0 25.7 282 72-394 58-383 (386)
183 1s0a_A Adenosylmethionine-8-am 99.9 6.7E-20 2.3E-24 182.7 30.8 325 32-396 60-422 (429)
184 3ri6_A O-acetylhomoserine sulf 99.9 1.6E-21 5.4E-26 193.8 18.2 225 60-316 80-325 (430)
185 1n8p_A Cystathionine gamma-lya 99.9 3.9E-21 1.3E-25 189.4 20.2 284 71-394 60-391 (393)
186 2oqx_A Tryptophanase; lyase, p 99.9 2E-21 6.8E-26 195.9 18.3 326 34-398 53-442 (467)
187 1ajs_A Aspartate aminotransfer 99.9 3.6E-21 1.2E-25 190.8 19.9 328 20-396 30-409 (412)
188 4adb_A Succinylornithine trans 99.9 1.5E-20 5E-25 185.9 22.7 312 32-398 56-400 (406)
189 3fsl_A Aromatic-amino-acid ami 99.9 7.2E-21 2.5E-25 187.6 19.6 327 21-394 27-396 (397)
190 3meb_A Aspartate aminotransfer 99.9 3E-20 1E-24 186.4 24.3 328 22-396 51-442 (448)
191 2ord_A Acoat, acetylornithine 99.9 1.8E-20 6.1E-25 184.9 22.3 308 32-396 57-395 (397)
192 2q7w_A Aspartate aminotransfer 99.9 3E-21 1E-25 190.3 16.3 330 20-394 26-395 (396)
193 2pb2_A Acetylornithine/succiny 99.9 2.2E-20 7.6E-25 185.7 22.6 311 32-397 74-417 (420)
194 3k7y_A Aspartate aminotransfer 99.9 2.7E-20 9.1E-25 183.7 22.5 338 8-396 16-403 (405)
195 3acz_A Methionine gamma-lyase; 99.9 1.3E-20 4.5E-25 185.4 20.3 285 61-391 58-386 (389)
196 4eu1_A Mitochondrial aspartate 99.9 1.3E-20 4.4E-25 186.8 20.0 336 8-395 28-408 (409)
197 1sff_A 4-aminobutyrate aminotr 99.9 9.6E-20 3.3E-24 181.3 26.0 321 32-397 58-423 (426)
198 2ay1_A Aroat, aromatic amino a 99.9 7.2E-21 2.5E-25 187.5 17.6 321 21-394 27-392 (394)
199 3nx3_A Acoat, acetylornithine 99.9 2.5E-19 8.7E-24 176.5 28.4 315 32-396 53-393 (395)
200 2eo5_A 419AA long hypothetical 99.9 6.4E-20 2.2E-24 182.3 22.8 327 23-397 45-417 (419)
201 3a8u_X Omega-amino acid--pyruv 99.8 1.6E-19 5.6E-24 181.0 25.9 321 32-397 67-446 (449)
202 1ibj_A CBL, cystathionine beta 99.8 3.3E-20 1.1E-24 186.2 19.6 281 71-396 138-460 (464)
203 3i4j_A Aminotransferase, class 99.8 1.6E-18 5.5E-23 172.8 31.5 327 33-397 47-427 (430)
204 2zy4_A L-aspartate beta-decarb 99.8 9.6E-20 3.3E-24 186.5 21.4 340 22-399 106-523 (546)
205 2ctz_A O-acetyl-L-homoserine s 99.8 2.4E-19 8.3E-24 178.2 22.9 191 24-245 24-221 (421)
206 3bc8_A O-phosphoseryl-tRNA(SEC 99.8 3.4E-21 1.2E-25 189.2 9.0 310 64-398 96-443 (450)
207 3tfu_A Adenosylmethionine-8-am 99.8 1.9E-18 6.5E-23 173.5 29.3 325 32-398 92-453 (457)
208 3n5m_A Adenosylmethionine-8-am 99.8 8.6E-18 2.9E-22 168.7 34.0 331 32-396 66-450 (452)
209 3dxv_A Alpha-amino-epsilon-cap 99.8 1E-18 3.6E-23 174.6 26.9 321 32-398 60-425 (439)
210 1zod_A DGD, 2,2-dialkylglycine 99.8 4.3E-18 1.5E-22 169.8 29.3 331 32-397 60-431 (433)
211 3nmy_A Xometc, cystathionine g 99.8 9.6E-19 3.3E-23 172.4 24.0 216 60-314 65-289 (400)
212 3gju_A Putative aminotransfera 99.8 1.7E-17 5.8E-22 166.8 32.9 330 33-398 69-456 (460)
213 3hl2_A O-phosphoseryl-tRNA(SEC 99.8 5.1E-19 1.7E-23 171.4 20.6 310 65-399 116-462 (501)
214 3i5t_A Aminotransferase; pyrid 99.8 2.8E-17 9.7E-22 165.8 34.0 328 32-398 71-454 (476)
215 4h51_A Aspartate aminotransfer 99.8 9.4E-19 3.2E-23 172.8 22.4 333 21-398 45-417 (420)
216 3dod_A Adenosylmethionine-8-am 99.8 1.8E-17 6E-22 166.2 30.6 320 32-398 61-443 (448)
217 3l44_A Glutamate-1-semialdehyd 99.8 1.8E-17 6.2E-22 165.3 29.1 314 32-398 72-430 (434)
218 3fq8_A Glutamate-1-semialdehyd 99.8 5E-17 1.7E-21 161.8 31.9 308 32-396 69-425 (427)
219 4a6r_A Omega transaminase; tra 99.8 2.3E-17 7.8E-22 165.9 28.1 327 33-398 68-449 (459)
220 3hmu_A Aminotransferase, class 99.8 2.1E-17 7.3E-22 166.4 27.7 321 32-398 72-452 (472)
221 2cjg_A L-lysine-epsilon aminot 99.8 7.6E-18 2.6E-22 168.9 24.3 316 32-397 71-447 (449)
222 2epj_A Glutamate-1-semialdehyd 99.8 7.4E-18 2.5E-22 168.2 23.5 316 32-397 73-430 (434)
223 3bwn_A AT1G70560, L-tryptophan 99.8 1.3E-18 4.5E-23 171.2 14.6 278 65-396 71-385 (391)
224 3k28_A Glutamate-1-semialdehyd 99.8 6.5E-17 2.2E-21 161.1 26.6 311 32-397 70-426 (429)
225 4ffc_A 4-aminobutyrate aminotr 99.8 1.9E-16 6.6E-21 158.8 29.6 328 32-397 81-448 (453)
226 4e77_A Glutamate-1-semialdehyd 99.8 6.1E-16 2.1E-20 154.0 31.2 315 32-396 70-427 (429)
227 3oks_A 4-aminobutyrate transam 99.8 6.8E-16 2.3E-20 154.7 31.6 328 32-396 78-449 (451)
228 2e7u_A Glutamate-1-semialdehyd 99.8 5.3E-17 1.8E-21 161.5 22.9 322 22-394 54-423 (424)
229 2cy8_A D-phgat, D-phenylglycin 99.8 1.3E-16 4.3E-21 160.2 25.0 313 32-398 74-435 (453)
230 2hox_A ALLIIN lyase 1; cystein 99.8 2.6E-18 9.1E-23 171.0 12.2 322 21-396 57-423 (427)
231 1ohv_A 4-aminobutyrate aminotr 99.7 1.9E-15 6.6E-20 152.2 23.7 317 32-397 80-470 (472)
232 4ao9_A Beta-phenylalanine amin 99.6 1.4E-12 4.9E-17 129.3 29.1 309 33-398 105-446 (454)
233 2yky_A Beta-transaminase; tran 99.3 3.4E-16 1.2E-20 156.3 0.0 320 22-398 102-460 (465)
234 4atq_A 4-aminobutyrate transam 99.5 1.5E-10 5.3E-15 115.1 34.0 331 32-397 81-454 (456)
235 4e3q_A Pyruvate transaminase; 99.3 2.1E-09 7.3E-14 107.3 29.2 327 32-398 84-468 (473)
236 4a0g_A Adenosylmethionine-8-am 99.2 2.9E-10 1E-14 121.1 19.5 211 159-397 577-827 (831)
237 2yxb_A Coenzyme B12-dependent 62.7 7.5 0.00026 31.9 4.2 52 141-197 46-97 (161)
238 1xrs_B D-lysine 5,6-aminomutas 60.6 17 0.00057 32.5 6.3 60 141-205 157-223 (262)
239 1y80_A Predicted cobalamin bin 59.3 15 0.00051 31.4 5.8 60 141-205 116-179 (210)
240 3nvt_A 3-deoxy-D-arabino-heptu 54.3 23 0.00077 33.7 6.5 57 153-209 256-323 (385)
241 1vs1_A 3-deoxy-7-phosphoheptul 54.2 26 0.0009 31.5 6.6 57 153-209 152-219 (276)
242 1vr6_A Phospho-2-dehydro-3-deo 53.5 19 0.00064 33.7 5.6 57 153-209 220-287 (350)
243 1zco_A 2-dehydro-3-deoxyphosph 51.7 20 0.00068 32.0 5.4 58 153-210 137-205 (262)
244 1ccw_A Protein (glutamate muta 50.3 12 0.0004 29.8 3.2 52 141-197 31-82 (137)
245 2ab1_A Hypothetical protein; H 48.9 51 0.0017 25.5 6.7 50 155-205 48-97 (122)
246 3ezx_A MMCP 1, monomethylamine 41.6 26 0.00087 30.2 4.3 60 140-204 119-184 (215)
247 3ghf_A Septum site-determining 41.1 56 0.0019 25.1 5.8 46 156-201 25-78 (120)
248 1iv0_A Hypothetical protein; r 38.5 87 0.003 23.0 6.3 52 154-205 36-94 (98)
249 2i2x_B MTAC, methyltransferase 38.3 40 0.0014 29.9 5.2 86 110-203 123-210 (258)
250 1vli_A Spore coat polysacchari 34.6 1.2E+02 0.004 28.7 7.9 84 153-239 165-260 (385)
251 3bzy_B ESCU; auto cleavage pro 34.4 22 0.00075 25.5 2.2 20 186-205 29-48 (83)
252 2lbw_A H/ACA ribonucleoprotein 33.2 81 0.0028 24.2 5.6 42 158-201 25-67 (121)
253 3v7e_A Ribosome-associated pro 32.1 38 0.0013 24.0 3.2 44 158-203 16-59 (82)
254 4gqr_A Pancreatic alpha-amylas 30.0 18 0.00063 35.2 1.6 28 178-205 71-98 (496)
255 2wqp_A Polysialic acid capsule 29.7 65 0.0022 30.0 5.2 91 153-246 155-255 (349)
256 3q58_A N-acetylmannosamine-6-p 29.2 1.5E+02 0.005 25.6 7.2 48 157-205 90-137 (229)
257 3igs_A N-acetylmannosamine-6-p 29.1 1.5E+02 0.005 25.6 7.2 48 157-205 90-137 (232)
258 2vt1_B Surface presentation of 28.3 32 0.0011 25.2 2.2 20 186-205 29-48 (93)
259 3t7y_A YOP proteins translocat 28.3 31 0.0011 25.5 2.2 20 186-205 44-63 (97)
260 1uhe_A Aspartate 1-decarboxyla 28.0 1.1E+02 0.0038 22.4 5.0 14 166-179 73-86 (97)
261 3sz8_A 2-dehydro-3-deoxyphosph 27.7 71 0.0024 28.8 4.9 53 156-208 145-206 (285)
262 3c01_E Surface presentation of 27.6 33 0.0011 25.4 2.2 20 186-205 29-48 (98)
263 1z8u_A Alpha-hemoglobin stabil 27.4 1.2E+02 0.004 21.8 4.9 48 381-442 34-81 (102)
264 4a18_G RPL30; ribosome, eukary 27.2 84 0.0029 23.3 4.6 42 158-201 27-68 (104)
265 1vc3_B L-aspartate-alpha-decar 27.2 1E+02 0.0035 22.6 4.7 14 166-179 75-88 (96)
266 3zqu_A Probable aromatic acid 26.9 2E+02 0.0069 24.4 7.5 65 20-84 131-195 (209)
267 3plx_B Aspartate 1-decarboxyla 26.3 1.3E+02 0.0046 22.2 5.2 13 167-179 75-87 (102)
268 2gm2_A Conserved hypothetical 26.2 90 0.0031 24.4 4.8 49 155-205 51-99 (132)
269 3kp1_A D-ornithine aminomutase 26.1 87 0.003 31.8 5.5 62 139-205 632-700 (763)
270 1lwj_A 4-alpha-glucanotransfer 26.0 26 0.0009 33.7 1.9 28 178-205 64-91 (441)
271 1g94_A Alpha-amylase; beta-alp 25.2 25 0.00085 34.1 1.6 28 178-205 59-86 (448)
272 3bh4_A Alpha-amylase; calcium, 25.0 28 0.00096 34.0 1.9 28 178-205 73-100 (483)
273 1wpc_A Glucan 1,4-alpha-maltoh 24.2 30 0.001 33.9 1.9 28 178-205 77-104 (485)
274 1ud2_A Amylase, alpha-amylase; 24.1 30 0.001 33.8 1.9 28 178-205 75-102 (480)
275 3ff4_A Uncharacterized protein 24.0 1.1E+02 0.0039 23.4 4.9 37 159-201 73-109 (122)
276 1ht6_A AMY1, alpha-amylase iso 23.8 31 0.0011 32.8 2.0 28 178-205 63-90 (405)
277 2qkf_A 3-deoxy-D-manno-octulos 23.8 1.1E+02 0.0037 27.5 5.5 51 157-207 141-200 (280)
278 1hvx_A Alpha-amylase; hydrolas 23.8 30 0.001 34.2 1.9 28 178-205 76-103 (515)
279 3j21_Z 50S ribosomal protein L 23.8 91 0.0031 22.8 4.2 42 158-201 20-61 (99)
280 2xw6_A MGS, methylglyoxal synt 23.6 1.2E+02 0.0042 23.7 5.0 46 160-205 65-113 (134)
281 3on1_A BH2414 protein; structu 23.4 85 0.0029 23.1 4.0 43 158-202 23-65 (101)
282 3v7q_A Probable ribosomal prot 23.2 87 0.003 23.1 4.0 43 158-202 24-66 (101)
283 1rlg_A 50S ribosomal protein L 23.2 1.4E+02 0.0049 22.6 5.4 42 158-201 32-74 (119)
284 3mio_A DHBP synthase, 3,4-dihy 23.2 1.6E+02 0.0055 25.0 6.0 34 169-202 158-194 (206)
285 1nu0_A Hypothetical protein YQ 23.2 1.3E+02 0.0045 23.6 5.2 52 154-205 38-97 (138)
286 4aie_A Glucan 1,6-alpha-glucos 23.0 32 0.0011 34.1 1.9 27 179-205 75-101 (549)
287 1mxg_A Alpha amylase; hyperthe 23.0 33 0.0011 33.1 1.9 28 178-205 81-108 (435)
288 2xzm_U Ribosomal protein L7AE 22.6 1.7E+02 0.0056 22.6 5.6 46 158-204 29-75 (126)
289 2guy_A Alpha-amylase A; (beta- 22.6 33 0.0011 33.4 1.9 28 178-205 92-119 (478)
290 1gcy_A Glucan 1,4-alpha-maltot 22.0 36 0.0012 33.7 2.1 28 178-205 87-114 (527)
291 1o60_A 2-dehydro-3-deoxyphosph 22.0 1.2E+02 0.0041 27.4 5.4 51 157-207 144-203 (292)
292 4h1h_A LMO1638 protein; MCCF-l 21.7 89 0.0031 28.7 4.6 94 107-205 9-117 (327)
293 4gfq_A Ribosome-recycling fact 21.4 2.6E+02 0.009 23.7 7.0 50 336-398 99-148 (209)
294 3fs2_A 2-dehydro-3-deoxyphosph 21.3 98 0.0034 28.0 4.6 52 156-208 166-225 (298)
295 1tks_A 3,4-dihydroxy-2-butanon 21.0 1.4E+02 0.0048 25.3 5.2 34 169-202 159-194 (204)
296 3u5e_c L32, RP73, YL38, 60S ri 20.9 1.2E+02 0.0043 22.4 4.5 42 158-201 27-68 (105)
297 1vmd_A MGS, methylglyoxal synt 20.8 2E+02 0.0069 23.7 6.0 46 160-205 89-137 (178)
298 2ale_A SNU13, NHP2/L7AE family 20.8 1.1E+02 0.0036 24.0 4.2 43 158-201 37-79 (134)
299 1wza_A Alpha-amylase A; hydrol 20.8 32 0.0011 33.6 1.4 28 178-205 76-103 (488)
300 1xbi_A 50S ribosomal protein L 20.7 1.1E+02 0.0038 23.3 4.2 42 158-201 34-76 (120)
301 1snn_A DHBP synthase, 3,4-dihy 20.3 1.4E+02 0.0049 25.7 5.2 34 169-202 178-212 (227)
302 2lh0_A Histone chaperone RTT10 20.2 84 0.0029 21.5 2.9 16 429-444 14-29 (70)
No 1
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=100.00 E-value=2.6e-102 Score=747.42 Aligned_cols=444 Identities=60% Similarity=1.028 Sum_probs=380.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217 1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g 80 (447)
|++.||||+++|++|.+||+++|+||||||++|++|++++++.|+|+|+|||||.|||+||+++|++|.+|+++++++||
T Consensus 35 l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~ 114 (490)
T 3ou5_A 35 LSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD 114 (490)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTT
T ss_pred hhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217 81 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM 160 (447)
Q Consensus 81 ~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~ 160 (447)
+++++|++|||++||++||++++.++++|||+|+.+++.+|||++|++......++++|.+|++++|++|++++.||+|+
T Consensus 115 a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~ 194 (490)
T 3ou5_A 115 LDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQ 194 (490)
T ss_dssp CCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHH
T ss_pred CCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHH
Confidence 99999999999999999999999999999999999999999999999877666788999999999999999999999999
Q ss_pred HHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc
Q 013217 161 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240 (447)
Q Consensus 161 l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG 240 (447)
+++++.++|||+|+++.|.||+.+|++++++||++.|++|++|+||.+|+++.+++++|+++||++++||||+|+|||||
T Consensus 195 ~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGPrGG 274 (490)
T 3ou5_A 195 LALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSG 274 (490)
T ss_dssp HHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSCSCE
T ss_pred HHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCc---------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC
Q 013217 241 MIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL 311 (447)
Q Consensus 241 ~i~~~~~~~---------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 311 (447)
+|+++++.. ..+++.+++++++||+.||+|++|.+||+++|++++.+++|++|.+++++|++.|++.|.+.
T Consensus 275 ~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~ 354 (490)
T 3ou5_A 275 LIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER 354 (490)
T ss_dssp EEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 999997411 11257889999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217 312 GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391 (447)
Q Consensus 312 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i 391 (447)
|+++++++|++|++++|+++.++++.++++.|++.||.+|++.+|+|.+|+.++||||||+++|+|||+++||++++++|
T Consensus 355 G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I 434 (490)
T 3ou5_A 355 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI 434 (490)
T ss_dssp TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHH
T ss_pred CCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217 392 HEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447 (447)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~ 447 (447)
.+++....+++.+. .++++|+..+..+. +..+.++++|++|.+||++||+|+|
T Consensus 435 ~~~l~~~~~~~~~~--~kl~~f~~~~~~~~-~~~~~i~~lr~~V~~l~~~FP~pg~ 487 (490)
T 3ou5_A 435 DEGVNIGLEVKSKT--AKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF 487 (490)
T ss_dssp HHHHHHHHHHHHTC--CSHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred HHHHHhhhhhhhhh--hhhHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999888887654 35677766553222 1124789999999999999999986
No 2
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=100.00 E-value=7.5e-75 Score=583.48 Aligned_cols=443 Identities=60% Similarity=1.028 Sum_probs=361.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC
Q 013217 2 QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL 81 (447)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~ 81 (447)
++.||+|+++|.+|.+||++.|+|++|+|++|++|+++|.+.++++|++|||++|||+|+++++++|+.++++++++||+
T Consensus 36 ~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~ 115 (490)
T 2a7v_A 36 SDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL 115 (490)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTC
T ss_pred hhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHH
Q 013217 82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 161 (447)
Q Consensus 82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l 161 (447)
++++|.++|+++||++||.+++.++++|||+|+++++.|++|++|++......+.+.|..++.++++++++++.+|+++|
T Consensus 116 ~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~l 195 (490)
T 2a7v_A 116 DPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQL 195 (490)
T ss_dssp CTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHH
T ss_pred CcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHH
Confidence 98777668888999999999999999999999999999999998876433234456777677788888877889999999
Q ss_pred HHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCce
Q 013217 162 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM 241 (447)
Q Consensus 162 ~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~ 241 (447)
++++.+++||+|+++.++||+..|+++|+++|++||+++++|++|++|+++.+..+.+++++|++++|+||+|+||+||+
T Consensus 196 e~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp~GG~ 275 (490)
T 2a7v_A 196 ALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGL 275 (490)
T ss_dssp HHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSCEE
T ss_pred HHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccccchh
Confidence 99998778999999988999989999999999999999999999999998888777777789999999999999999999
Q ss_pred EEeecCCc---------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217 242 IFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG 312 (447)
Q Consensus 242 i~~~~~~~---------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 312 (447)
++++++.. ..+++.+++++..+++.+|+|+++.++++++|++++..++++++.+++.+|+++|++.|.+.|
T Consensus 276 i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G 355 (490)
T 2a7v_A 276 IFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG 355 (490)
T ss_dssp EEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99987310 001366788888899999999999999999999998877889999999999999999999999
Q ss_pred cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217 313 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH 392 (447)
Q Consensus 313 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~ 392 (447)
++++.+++++|++++++++.++++.++.+.|+++||.++.+.+|++.+|+.+++||+|++++|+||++++||++++++|.
T Consensus 356 ~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~ 435 (490)
T 2a7v_A 356 YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFID 435 (490)
T ss_dssp CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHH
Confidence 99987667899999999888888999999999999999999999988788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217 393 EGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447 (447)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~ 447 (447)
+++.....++.++ +++++|++.+.+++ +..+.+.++|++|.+||++||+|+|
T Consensus 436 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 487 (490)
T 2a7v_A 436 EGVNIGLEVKSKT--AKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF 487 (490)
T ss_dssp HHHHHHHHHHHHC--CSHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred HHHHhhhhhhhhh--chhhHHHhhhccCh-hhHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999998888776 45789988876432 1113588999999999999999985
No 3
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=100.00 E-value=2.1e-66 Score=526.60 Aligned_cols=444 Identities=61% Similarity=1.021 Sum_probs=383.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217 3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD 82 (447)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~ 82 (447)
+.||++++++.+|.+||++.|+|++|+|++|+.|++++.+.+.++|.+|||+.++|++++..+++|+.++++++++||++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~ 106 (483)
T 1rv3_A 27 DSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLD 106 (483)
T ss_dssp HHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217 83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 162 (447)
Q Consensus 83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~ 162 (447)
+++|.++|+++||+++|.+++.++++|||+|++++++|++|++|++......+.+.|..++.++++++++++.+|+++|+
T Consensus 107 ~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le 186 (483)
T 1rv3_A 107 PQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLE 186 (483)
T ss_dssp TTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHH
T ss_pred cccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHH
Confidence 87665678899999999999999999999999999999999999887665566777776788888888778899999999
Q ss_pred HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217 163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI 242 (447)
Q Consensus 163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i 242 (447)
+++++.+||+|+++.++++...|+++|+++|+++|+++++|++|+.|+++.+..++|++++|++++|+||+|+||+||++
T Consensus 187 ~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~GprgG~i 266 (483)
T 1rv3_A 187 ENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMI 266 (483)
T ss_dssp HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSCEEE
T ss_pred HHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCceEE
Confidence 99985599999996666677889999999999999999999999999998888777777899999999999999999999
Q ss_pred EeecCCc---------chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc
Q 013217 243 FFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY 313 (447)
Q Consensus 243 ~~~~~~~---------~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 313 (447)
+++++.. ..+++.+.++...+++.+|+|+.+.++++++|++.+...+++++.+++.++++++.+.|.+.|+
T Consensus 267 ~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 346 (483)
T 1rv3_A 267 FYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGY 346 (483)
T ss_dssp EEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9997411 0002455666667788899999999999999999987778899999999999999999999999
Q ss_pred EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
+++.+++++|+++++++..++++.++.+.|.+.||.++.+++|++..++.++++|||++.+++|||+++|+++++++|++
T Consensus 347 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~ 426 (483)
T 1rv3_A 347 KIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHR 426 (483)
T ss_dssp EEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHH
Confidence 98876667788899987767788899999999999999777787655566789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc-cccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 013217 394 GVEITLEAKKLVQ-GSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447 (447)
Q Consensus 394 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~~ 447 (447)
++.....++.+.. .+.+++|++.+.++. ...+.++++|++|.+||++||+|+|
T Consensus 427 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (483)
T 1rv3_A 427 GIELTVQIQDDTGPRATLKEFKEKLAGDE-KHQRAVRALRQEVESFAALFPLPGL 480 (483)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHTTSCCCSS
T ss_pred HHHhccchhccccccchhhHHHHhhcccc-chhHHHHHHHHHHHHHHHhCCCCCc
Confidence 9987544443332 225678888886432 0112688999999999999999975
No 4
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2e-53 Score=427.95 Aligned_cols=403 Identities=49% Similarity=0.790 Sum_probs=341.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217 3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD 82 (447)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~ 82 (447)
..||+++..+.+|.+||.+.|+|++++|+++|.|++++.+.+.++|..|||+.+|+.|+...+.+|+.+++++++++|++
T Consensus 28 ~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~ 107 (447)
T 3h7f_A 28 EVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE 107 (447)
T ss_dssp HHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred hCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999999999999999999999999999999999999988999999999999999999999988878999999998
Q ss_pred CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217 83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 162 (447)
Q Consensus 83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~ 162 (447)
. ++++++||++|+..++.++++|||+|+++++.|++|+.++. .+...|..+..++++++++++.+|+++++
T Consensus 108 ~----~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~ 178 (447)
T 3h7f_A 108 F----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGM-----RLNFSGKLYENGFYGVDPATHLIDMDAVR 178 (447)
T ss_dssp E----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHSSEEEEECCCTTTCSCCHHHHH
T ss_pred c----eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhh-----hhhhcCCeeEEEEcCcCcccCCcCHHHHH
Confidence 6 35657999999999999999999999999999988766553 22345555677777777677889999999
Q ss_pred HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217 163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI 242 (447)
Q Consensus 163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i 242 (447)
+++...+|++|+++.++||+..++++|+++|+++|+++++|++|+.|++..+..+.+++++|++++|+||+|+||+||++
T Consensus 179 ~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~~gG~i 258 (447)
T 3h7f_A 179 ATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLI 258 (447)
T ss_dssp HHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCCSCEEE
T ss_pred HHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCCCeEEE
Confidence 99976689999998888888779999999999999999999999888877766666666789999999999999999999
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-----CcEeee
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-----GYKLVS 317 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~ 317 (447)
++++ ++.+.+.....++.+|+++...++++++++..+...+++++.+++.++++++.+.|.+. |++++.
T Consensus 259 ~~~~------~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~ 332 (447)
T 3h7f_A 259 VGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVS 332 (447)
T ss_dssp EECG------GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGG
T ss_pred EECH------HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEec
Confidence 9988 67788877777888888888888888888888776678889999999999999999887 999876
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 318 GGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 318 ~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+++++++++++++..+++...+.+.|+++||.++.+.+|++. ++..++++|+|++.++++|++++|+++++++|.+++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~ 412 (447)
T 3h7f_A 333 GGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA 412 (447)
T ss_dssp GSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 556788888998877778888999999999999877777753 4566789999999999999999999999999999887
Q ss_pred HHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 013217 397 ITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP 445 (447)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 445 (447)
... +. .+++++++|.+|+++||++
T Consensus 413 ~~~--------------------~~-----~~~~~~~~v~~~~~~~~~~ 436 (447)
T 3h7f_A 413 TGS--------------------SV-----DVSALKDRATRLARAFPLY 436 (447)
T ss_dssp SGG--------------------GC-----CHHHHHHHHHHHHHHSCSS
T ss_pred ccC--------------------ch-----hHHHHHHHHHHHHHhCCCC
Confidence 430 12 2789999999999999994
No 5
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=1.1e-50 Score=404.19 Aligned_cols=406 Identities=46% Similarity=0.771 Sum_probs=338.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC
Q 013217 2 QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL 81 (447)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~ 81 (447)
+.+||++++.+.+|..+|.+.++|.+++|++++.|++++.+.+.+.|..||++.++|++....+.+++.+++++++++|+
T Consensus 7 ~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~ 86 (417)
T 3n0l_A 7 EMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC 86 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC
Confidence 45799999999999999999999999999999999999999988888889999999999999999998899999999999
Q ss_pred CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHH
Q 013217 82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 161 (447)
Q Consensus 82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l 161 (447)
+++ +|.++||++|+..++.++++|||+|++.++.|+++..++. .+...|..+..++++++ +++.+|+++|
T Consensus 87 ~~~----~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~~~l 156 (417)
T 3n0l_A 87 KFA----NVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGA-----KVSSSGKMYESCFYGVE-LDGRIDYEKV 156 (417)
T ss_dssp SEE----ECCCSSHHHHHHHHHHHHSCTTCEEEEECC---------------------CCSEEEEECCC-TTSSCCHHHH
T ss_pred CCc----ceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhh-----hhhhhcceeeeEeccCC-CCCCcCHHHH
Confidence 763 4666999999999999999999999999999988765443 22344555667777777 6788999999
Q ss_pred HHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCce
Q 013217 162 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM 241 (447)
Q Consensus 162 ~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~ 241 (447)
++++++.+|++|+++.++++...|+++|.++|++||+++|+|++|+.|....+..+.++..+|++++|+||+|+||+||+
T Consensus 157 ~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~ 236 (417)
T 3n0l_A 157 REIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGI 236 (417)
T ss_dssp HHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSCEE
T ss_pred HHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCeeE
Confidence 99998559999999887887788999999999999999999999988888776656555578999999999999999999
Q ss_pred EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217 242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD 321 (447)
Q Consensus 242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 321 (447)
++++++ ++.+.+.....++..++++...++++++++......+++++.+++.++++++.+.|.+.|+++..++..
T Consensus 237 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 311 (417)
T 3n0l_A 237 IMTNDE-----ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGTD 311 (417)
T ss_dssp EEESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred EEECCH-----HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCCC
Confidence 999843 787888776677777888998888888888876666778999999999999999999989988765556
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217 322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE 400 (447)
Q Consensus 322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~ 400 (447)
.+++++++...+++..++.+.|.++||.++....|+.. +++.++++|+|++.+++++++++|+++++++|+++++..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~-- 389 (417)
T 3n0l_A 312 NHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV-- 389 (417)
T ss_dssp SSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT--
T ss_pred ceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc--
Confidence 77888888776778889999999999999877667654 456667899999999999999999999999999998743
Q ss_pred HHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 013217 401 AKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446 (447)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~ 446 (447)
. +. +.+++++++|.+|+++||+|+
T Consensus 390 -----------------~-~~----~~~~~~~~~v~~~~~~~~~~~ 413 (417)
T 3n0l_A 390 -----------------N-NE----KLQENIKQELKKLASNFIIYE 413 (417)
T ss_dssp -----------------T-CH----HHHHHHHHHHHHHHTTCCCCS
T ss_pred -----------------c-ch----hhHHHHHHHHHHHHhcCCCcc
Confidence 1 11 368899999999999999975
No 6
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=100.00 E-value=3e-48 Score=386.86 Aligned_cols=408 Identities=48% Similarity=0.784 Sum_probs=317.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC
Q 013217 2 QACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL 81 (447)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~ 81 (447)
++++|++++++.++.+++.+.+.+++++|+.+|.|.+++.+.+.+.|..||++.+++.+....+.+++.+++++++++|+
T Consensus 12 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 91 (420)
T 3gbx_A 12 ADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA 91 (420)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC
T ss_pred hhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999999999999999999999987788889999888888777788888888999999999
Q ss_pred CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHH
Q 013217 82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 161 (447)
Q Consensus 82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l 161 (447)
+++ .|.++||++|+..++.++++|||+|++.++.|++++.++. .+...|..+..++++.+ +++.+|+++|
T Consensus 92 ~~~----~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~~~l 161 (420)
T 3gbx_A 92 DYA----NVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGS-----PVNFSGKLYNIVPYGID-ESGKIDYDEM 161 (420)
T ss_dssp SEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC-----------------CHHHHSEEEEEEEC-TTCSCCHHHH
T ss_pred CCc----eeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccch-----hhhhcccceeEEeccCC-ccCCcCHHHH
Confidence 764 4556999999999999999999999999999988764443 22344555566677776 5678999999
Q ss_pred HHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCce
Q 013217 162 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM 241 (447)
Q Consensus 162 ~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~ 241 (447)
++++++++|++|+++.+++|+..++++|.++|++||+++|+|++|+.|....+..+.++..+|++++|+||+++||+||+
T Consensus 162 ~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gg~ 241 (420)
T 3gbx_A 162 AKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGL 241 (420)
T ss_dssp HHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSCEE
T ss_pred HHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCceE
Confidence 99998767999999888888888999999999999999999999988877665555555568999999999999999999
Q ss_pred EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217 242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD 321 (447)
Q Consensus 242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 321 (447)
+++++.. .++.+.+....+++.+++++...+++++.++......+++++.+++.++++++.+.|.+.|++++.++..
T Consensus 242 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 318 (420)
T 3gbx_A 242 ILAKGGD---EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTE 318 (420)
T ss_dssp EEESSCC---HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred EEEcCCc---HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCC
Confidence 9998621 0466667666677777888888888888888776666778889999999999999999999988765456
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013217 322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE 400 (447)
Q Consensus 322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~ 400 (447)
.+++++++.+.+.+...+.+.|.++||.++....|+.. .++.+.++|++++..++++++++|+++++++|++++...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~-- 396 (420)
T 3gbx_A 319 NHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI-- 396 (420)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT--
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc--
Confidence 77788887665667888999999999999875556543 345567899999999999999999999999999988743
Q ss_pred HHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 013217 401 AKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 446 (447)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~ 446 (447)
. +. ..+++++++|.+||++||+++
T Consensus 397 -----------------~-~~----~~~~~~~~~~~~~~~~~~~~~ 420 (420)
T 3gbx_A 397 -----------------N-DE----ATIERVKAKVLDICARFPVYA 420 (420)
T ss_dssp -----------------T-CH----HHHHHHHHHHHHHHHHSCSCC
T ss_pred -----------------c-cc----hhHHHHHHHHHHHHHhCCCCC
Confidence 1 11 368899999999999999964
No 7
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=3.6e-47 Score=379.67 Aligned_cols=410 Identities=48% Similarity=0.762 Sum_probs=314.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217 3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD 82 (447)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~ 82 (447)
..+|++...+.++.+++.+.++|.+++|+.+|.|++++.+.+.+.|..|+++.+++.+....+.+++.+++++++++|.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 94 (425)
T 3ecd_A 15 ERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAG 94 (425)
T ss_dssp HHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCS
T ss_pred hhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCC
Confidence 46889999999999999899999999999999999999999888888899998888887766677777778899999988
Q ss_pred CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217 83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 162 (447)
Q Consensus 83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~ 162 (447)
. ..+.+++|++|+..++.++++|||+|++.++.|++++.++. .....|..++.++++++++++.+|+++|+
T Consensus 95 ~----~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~ 165 (425)
T 3ecd_A 95 H----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGA-----KPALSGKWFNALQYGVSRDTMLIDYDQVE 165 (425)
T ss_dssp E----EECCCSSHHHHHHHHHHHHCCTTCEEEEECC-----------------------CEEEEECCCTTTSSCCHHHHH
T ss_pred C----ceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecch-----hhhhcccceeeeecCCCcccCccCHHHHH
Confidence 6 24556889999999999999999999999999987543332 12244555677777777667899999999
Q ss_pred HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217 163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI 242 (447)
Q Consensus 163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i 242 (447)
+++++.+|++|++++++||...++++|.++|++||+++|+|++|+.|....+....+++.+|++++|+||+|+||+||++
T Consensus 166 ~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~g~~ 245 (425)
T 3ecd_A 166 ALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFV 245 (425)
T ss_dssp HHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSCEEE
T ss_pred HHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCcEEE
Confidence 99986689999998888888889999999999999999999999888876655444444689999999999999999999
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN 322 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 322 (447)
+++++ ++.+.+....+++..++++...+++++.++......+++++.+++.++++++.+.|.+.|+++..++...
T Consensus 246 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 320 (425)
T 3ecd_A 246 LTNDE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDN 320 (425)
T ss_dssp EESCH-----HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS
T ss_pred EeCCH-----HHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCCc
Confidence 99863 6777777766777777888888888888887766667788899999999999999999999887654456
Q ss_pred eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013217 323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA 401 (447)
Q Consensus 323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~ 401 (447)
+++++++.+.+.+...+.+.|.++||.++....|+.. .++..+++|++++.+++++++++|+++++++|+++++...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~~-- 398 (425)
T 3ecd_A 321 HLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEALR-- 398 (425)
T ss_dssp SEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH--
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhccc--
Confidence 7788887655667888999999999999866556654 3455678999999999999999999999999999987531
Q ss_pred HHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 013217 402 KKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP 445 (447)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 445 (447)
+ ++ ..+. +.+++++++|.+||++||++
T Consensus 399 --~--~~---------~~~~----~~~~~~~~~~~~~~~~~~~~ 425 (425)
T 3ecd_A 399 --T--NP---------EGDH----ATEQRVRREIFALCERFPIY 425 (425)
T ss_dssp --H--CT---------TCCH----HHHHHHHHHHHHHHHTSCCC
T ss_pred --c--cc---------ccCc----hhHHHHHHHHHHHHhcCCCC
Confidence 0 10 1111 36789999999999999984
No 8
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=100.00 E-value=7.3e-43 Score=346.59 Aligned_cols=401 Identities=49% Similarity=0.807 Sum_probs=317.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217 3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD 82 (447)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~ 82 (447)
..||++++.+.++..+++..|++..++|+.++.|++++.+.+.+.+..+||+.+++.|......+|+.+++++++++|++
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~ 85 (407)
T 2dkj_A 6 KRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA 85 (407)
T ss_dssp CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC
Confidence 57999999999999999999999999999999999999998876566678877666666666778877888999999998
Q ss_pred CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217 83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 162 (447)
Q Consensus 83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~ 162 (447)
++ ++.++||++|+..++.++++|||+|++.++.|++++.... .+...|..+..++++++++++.+|+++++
T Consensus 86 ~~----~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~ 156 (407)
T 2dkj_A 86 WA----NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGS-----RVNFSGKLYKVVSYGVRPDTELIDLEEVR 156 (407)
T ss_dssp EE----ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECCCTTTSSCCHHHHH
T ss_pred cc----eEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHH-----HHHhcCceEEEEecCCCcccCccCHHHHH
Confidence 53 4556899999999999999999999999998877642121 23345554466666655456789999999
Q ss_pred HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217 163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI 242 (447)
Q Consensus 163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i 242 (447)
+++++.+|++|+++.+++|...|+++|.++|+++|+++++|++|+.|+...+....++...|++++|+||+|+|++||++
T Consensus 157 ~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~ 236 (407)
T 2dkj_A 157 RLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLI 236 (407)
T ss_dssp HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEEE
T ss_pred HHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceEE
Confidence 99985589999998788888889999999999999999999999887776654443344589999999999999999999
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN 322 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 322 (447)
+++++ ++.+.+.....++..++++...++++.++++.....++++..+++.++++++.+.|++.|++++.+....
T Consensus 237 ~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 311 (407)
T 2dkj_A 237 LSNDP-----ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDN 311 (407)
T ss_dssp EESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS
T ss_pred EECCH-----HHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCCCCc
Confidence 99832 6777777655566667788877777777888765566788899999999999999998898887532346
Q ss_pred eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013217 323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA 401 (447)
Q Consensus 323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~ 401 (447)
+++++.+...+.+..++.+.|.++||.+..+..|.+. .+..++++|++++.+++.+++++|++++++.|++++.. .
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~-~-- 388 (407)
T 2dkj_A 312 HLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE-G-- 388 (407)
T ss_dssp SEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH-C--
T ss_pred eEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc-C--
Confidence 6778877644456788899999999999765443221 22235689999877655556699999999999988752 0
Q ss_pred HHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 013217 402 KKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP 445 (447)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 445 (447)
+ .+.++++|.+|.++||+|
T Consensus 389 -------------------~------~~~~~~~~~~~~~~~~~~ 407 (407)
T 2dkj_A 389 -------------------P------SEALREEVRRLALAHPMP 407 (407)
T ss_dssp -------------------C------CHHHHHHHHHHHHTSCCC
T ss_pred -------------------c------hHHHHHHHHHHHHhcCCC
Confidence 1 146888999999999975
No 9
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=100.00 E-value=2.3e-42 Score=342.77 Aligned_cols=398 Identities=50% Similarity=0.822 Sum_probs=313.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217 3 ACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD 82 (447)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~ 82 (447)
++||+++..+.++.+++.+.+.+.+++++.|+.|++++...+.++|..||++.+++.+......+++.+++++++++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~ 85 (405)
T 2vi8_A 6 QQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE 85 (405)
T ss_dssp HHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC
Confidence 46899999999999988888888899999999999999998876677788888777776667888888889999999998
Q ss_pred CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217 83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 162 (447)
Q Consensus 83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~ 162 (447)
++ .+.++||++|+..++.++++|||+|++.++.|+++..... .+...|..+++++++++++++.+|+++++
T Consensus 86 ~~----~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~ 156 (405)
T 2vi8_A 86 HA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYDDVR 156 (405)
T ss_dssp EE----ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-----TTSHHHHHSEEEEECBCTTTCSBCHHHHH
T ss_pred ce----EEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-----hhhhccceeEEEecccccccCCcCHHHHH
Confidence 53 4556899999999999999999999999988877643221 11234443466677666556789999999
Q ss_pred HHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceE
Q 013217 163 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI 242 (447)
Q Consensus 163 ~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i 242 (447)
+++++.+|++|+++.++++...++++|.++|+++|+++++|++|+.|....+....++...|++++|+||+++||.||++
T Consensus 157 ~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~ 236 (405)
T 2vi8_A 157 EKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMI 236 (405)
T ss_dssp HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEE
T ss_pred HHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCCeEE
Confidence 99986689999987666766778999999999999999999999877655444333333589999999999988889999
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN 322 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 322 (447)
++++ ++.+.+.....++..|+++...++++.++++.+...++++..+++.++++++.+.|.+.|+++..+....
T Consensus 237 ~~~~------~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 310 (405)
T 2vi8_A 237 LCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDN 310 (405)
T ss_dssp EECH------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS
T ss_pred EEcH------HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCc
Confidence 9986 7777776655556667788888888877888766566788899999999999999998898887543346
Q ss_pred eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013217 323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA 401 (447)
Q Consensus 323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~~~ 401 (447)
+++++++...+.+..++.+.|.++||.++.+..|.+. .+..++++|++++.++++.++++|++++++.|++++...
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~--- 387 (405)
T 2vi8_A 311 HLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV--- 387 (405)
T ss_dssp SEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT---
T ss_pred eEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc---
Confidence 6778887644556788889999999999765433222 223356899999887777788999999999999887532
Q ss_pred HHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHH
Q 013217 402 KKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALT 439 (447)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 439 (447)
.+ + +.+..+|++|.+|+
T Consensus 388 ----------------~~-~----~~~~~~~~~~~~~~ 404 (405)
T 2vi8_A 388 ----------------GS-E----QALEEARQRVAALT 404 (405)
T ss_dssp ----------------TC-H----HHHHHHHHHHHHHH
T ss_pred ----------------cc-c----ccHHHHHHHHHHhh
Confidence 11 1 24778999999987
No 10
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.98 E-value=6.3e-30 Score=253.63 Aligned_cols=336 Identities=15% Similarity=0.118 Sum_probs=243.3
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
..+.+.++...+++.|++++.+.+.+.+ ...+. .+.+.+++++++++|++.++. .+.++||++|+.
T Consensus 13 ~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~~-~~~~~~~~~la~~~~~~~~~~--v~~~~sgt~al~ 78 (411)
T 3nnk_A 13 SRLLMGPGPINADPRVLRAMSSQLIGQY-----------DPAMT-HYMNEVMALYRGVFRTENRWT--MLVDGTSRAGIE 78 (411)
T ss_dssp CCEEESSSCCCCCHHHHHHHTSCCCCTT-----------CHHHH-HHHHHHHHHHHHHHTCCCSEE--EEEESCHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhhccccccc-----------cHHHH-HHHHHHHHHHHHHhCCCCCcE--EEECCCcHHHHH
Confidence 3467788888999999999876432211 11122 333455689999999986542 233456789999
Q ss_pred HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217 101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180 (447)
Q Consensus 101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~ 180 (447)
.++.++++|||+|++.++.|.+.. + ...+...|. +++.++++ .++.+|+++|++++++.+|++|++++++|
T Consensus 79 ~~~~~~~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 149 (411)
T 3nnk_A 79 AILVSAIRPGDKVLVPVFGRFGHL---L---CEIARRCRA--EVHTIEVP-WGEVFTPDQVEDAVKRIRPRLLLTVQGDT 149 (411)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhcCCCCEEEEecCCchHHH---H---HHHHHHcCC--eEEEEecC-CCCCCCHHHHHHHHhhCCCeEEEEeCCCC
Confidence 999999999999999998775521 0 012234454 45555565 46789999999999866899999987666
Q ss_pred CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217 181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 257 (447)
Q Consensus 181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~ 257 (447)
++ ..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||+|.||.| |++++++ ++.+.
T Consensus 150 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~ 220 (411)
T 3nnk_A 150 STTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVW---GLDAVSAGMQKCLGGPSGTSPITLSA------RMEEA 220 (411)
T ss_dssp TTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSTTTTCCCSSEEEEEECH------HHHHH
T ss_pred CcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhcc---CCcEEEecCccccCCCCceEEEEECH------HHHHH
Confidence 65 779999999999999999999998776543322211 489999999999888877 9999988 66665
Q ss_pred hhhcc-----------------------------------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217 258 INNAV-----------------------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR 302 (447)
Q Consensus 258 i~~~~-----------------------------------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~ 302 (447)
+.... .....++++...++++..+++.....++++..+++.++++
T Consensus 221 ~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~ 300 (411)
T 3nnk_A 221 IRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGD 300 (411)
T ss_dssp HHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55421 0112367788888888888887765557888999999999
Q ss_pred HHHHHHHHCCcEeeeCCC--CCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEec-CccccCC
Q 013217 303 ALASRLVELGYKLVSGGS--DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRG 378 (447)
Q Consensus 303 ~l~~~L~~~g~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g 378 (447)
++.+.|++.|+++..+.. ..++.++.+. .+.+..++.+.|.+ +||.++.+.. +...+.+|+++ +..++
T Consensus 301 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~~~-- 372 (411)
T 3nnk_A 301 ALVKGIQAMGLETFGDLKHKMNNVLGVVIP-QGINGDQARKLMLEDFGIEIGTSFG-----PLHGKVWRIGTMGYNAR-- 372 (411)
T ss_dssp HHHHHHHHTTCCBCSCGGGBCSSEEEEECC-TTCCHHHHHHHHHHHHSEEEEECCG-----GGTTTEEEEECCGGGCS--
T ss_pred HHHHHHHHcCCEeCCCcccccccEEEEECC-CCCCHHHHHHHHHHhcCeEEeCccC-----CCCCCEEEEeCccCcCC--
Confidence 999999998888765321 1344555553 35677888887765 5999975421 12345899997 54556
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 013217 379 FSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 379 ~~~~di~~l~~~i~~~l~~~ 398 (447)
++|++++++.|+++++..
T Consensus 373 --~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 373 --KDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHc
Confidence 999999999999998753
No 11
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=9.2e-30 Score=252.86 Aligned_cols=336 Identities=13% Similarity=0.095 Sum_probs=242.4
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
..+.+.++...+++++++++.+..... +. .. ...+.+..++++++++|++++.+ .+.++||++|+.
T Consensus 11 ~~~~~~p~p~~~~~~v~~a~~~~~~~~----------~~-~~-~~~~~~~l~~~la~~~g~~~~~~--~~~~~s~t~al~ 76 (416)
T 3isl_A 11 LRTIMTPGPVEVDPRVLRVMSTPVVGQ----------FD-PA-FTGIMNETMEMLRELFQTKNRWA--YPIDGTSRAGIE 76 (416)
T ss_dssp CCEECSSSSCCCCHHHHHHTTSCCCCT----------TS-HH-HHHHHHHHHHHHHHHTTCCCSEE--EEEESCHHHHHH
T ss_pred cceeecCCCcCcCHHHHHHhcccCCCC----------cc-HH-HHHHHHHHHHHHHHHhCCCCCcE--EEecCcHHHHHH
Confidence 346677888889999999986532111 11 11 23344456689999999987532 224567779999
Q ss_pred HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217 101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180 (447)
Q Consensus 101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~ 180 (447)
.++.++++|||+|++.++.|.++. + ...+...|. +++.++++ .++.+|++++++++++.+|++|++++++|
T Consensus 77 ~~~~~l~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 147 (416)
T 3isl_A 77 AVLASVIEPEDDVLIPIYGRFGYL---L---TEIAERYGA--NVHMLECE-WGTVFDPEDIIREIKKVKPKIVAMVHGET 147 (416)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhcCCCCEEEEecCCcccHH---H---HHHHHhcCC--eeEEEecC-CCCCCCHHHHHHHHhhCCCcEEEEEccCC
Confidence 999999999999999998765521 1 012234454 55555565 45689999999999855899999987777
Q ss_pred CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217 181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 257 (447)
Q Consensus 181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~ 257 (447)
|+ ..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||++.||.| |++++++ ++.+.
T Consensus 148 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~l~g~~g~g~~~~~~------~~~~~ 218 (416)
T 3isl_A 148 STGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEW---KIDAAIGGTQKCLSVPSGMAPITYNE------RVADV 218 (416)
T ss_dssp TTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCCCSSEEEEEECH------HHHHH
T ss_pred CCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhc---CCCEEEecCccccCCCCCeEEEEECH------HHHHH
Confidence 65 789999999999999999999999877554332221 489999999999888888 9999887 56655
Q ss_pred hhhc-------------------------------------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217 258 INNA-------------------------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300 (447)
Q Consensus 258 i~~~-------------------------------------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~ 300 (447)
+... ......++++...++++..+++.....++++..+++.++
T Consensus 219 ~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~ 298 (416)
T 3isl_A 219 IAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHH 298 (416)
T ss_dssp HHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5421 111125677888888888888877655578889999999
Q ss_pred HHHHHHHHHHCCcEeeeCCC--CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217 301 CRALASRLVELGYKLVSGGS--DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTR 377 (447)
Q Consensus 301 ~~~l~~~L~~~g~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~ 377 (447)
++++.+.|.+.|+++..+.. ..+++++.+. .+.+..++.+.|.+. ||.++.+.. +..++.+|++++.+++
T Consensus 299 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~~- 371 (416)
T 3isl_A 299 EAALAAGIKAMGLRLFGDDSCKMPVVTCVEIP-GGIDGESVRDMLLAQFGIEIASSFG-----PLAGKIWRIGTMGYSC- 371 (416)
T ss_dssp HHHHHHHHHHTTCCBCSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCCS-----TTTTTEEEEECCGGGC-
T ss_pred HHHHHHHHHHcCCEeccCccccCCcEEEEeCC-CCCCHHHHHHHHHHhCCEEEecCCC-----CCCCCEEEEecccCCC-
Confidence 99999999998888765321 1234455553 345778888888665 999975421 2235689999877666
Q ss_pred CCCHHH-HHHHHHHHHHHHHHH
Q 013217 378 GFSEKE-FVAIADFIHEGVEIT 398 (447)
Q Consensus 378 g~~~~d-i~~l~~~i~~~l~~~ 398 (447)
++| ++++++.|++++...
T Consensus 372 ---~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 372 ---RKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp ---SHHHHHHHHHHHHHHHHHT
T ss_pred ---cHHHHHHHHHHHHHHHHHc
Confidence 455 999999999988754
No 12
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.97 E-value=4.8e-30 Score=251.92 Aligned_cols=331 Identities=16% Similarity=0.112 Sum_probs=239.1
Q ss_pred CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC--CccceeeecCCcHHHH
Q 013217 22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPAN 99 (447)
Q Consensus 22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~--~~~~~~v~~~sGs~a~ 99 (447)
.+.+.++...+++.+++++...+.+.+ +.. ...+.+..++++++++|+++ +.+ +.+++|++|+
T Consensus 3 ~~~~~~gp~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~~~~~la~~~~~~~~~~~v---~~~~g~t~al 67 (384)
T 3zrp_A 3 KLLLHVGPTTIKEDVLVAGLENNVGFT-----------SKE-FVEALAYSLKGLRYVMGASKNYQPL---IIPGGGTSAM 67 (384)
T ss_dssp ---CCSSCSCCCHHHHHHTTCCSCCTT-----------SHH-HHHHHHHHHHHHHHHHTCCTTSEEE---EEESCHHHHH
T ss_pred ceeccCCCCCCCHHHHHHhhccccccc-----------cHH-HHHHHHHHHHHHHHHhCCCCCCcEE---EEcCCcHHHH
Confidence 356788888999999999977654321 111 23344456689999999986 422 3345566999
Q ss_pred HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217 100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 179 (447)
Q Consensus 100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~ 179 (447)
. ++.++++|||+|++.++.|.+.. +. ..+...|. +++.++++ .++.+|+++++++++++++++|++++++
T Consensus 68 ~-~~~~~~~~gd~vi~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 137 (384)
T 3zrp_A 68 E-SVTSLLKPNDKILVVSNGVFGDR---WE---QIFKRYPV--NVKVLRPS-PGDYVKPGEVEEEVRKSEYKLVALTHVE 137 (384)
T ss_dssp H-HGGGGCCTTCEEEEECSSHHHHH---HH---HHHTTSSC--EEEEECCS-TTCCCCHHHHHHHHHHSCEEEEEEESEE
T ss_pred H-HHHhhcCCCCEEEEecCCcchHH---HH---HHHHHcCC--cEEEecCC-CCCCCCHHHHHHHHHhCCCcEEEEeCCC
Confidence 9 99999999999999987664421 10 01123444 55566666 3578999999999987689999998777
Q ss_pred CCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217 180 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 256 (447)
Q Consensus 180 ~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~ 256 (447)
||+ ..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||+++|+.| |++++++ ++.+
T Consensus 138 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~ 208 (384)
T 3zrp_A 138 TSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEW---NVDVYLTASQKALGSAAGLGLLLLSP------KALS 208 (384)
T ss_dssp TTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTT---TCSEEEEETTSTTCCCSSEEEEEECH------HHHH
T ss_pred CCCceECcHHHHHHHHHhcCCEEEEECcccccCcccccccc---CCCEEEecCcccccCCCceEEEEECH------HHHH
Confidence 764 789999999999999999999999876543322111 489999999999987777 9999987 5655
Q ss_pred Hh-hh------------cc---------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcE
Q 013217 257 AI-NN------------AV---------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK 314 (447)
Q Consensus 257 ~i-~~------------~~---------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 314 (447)
.+ .. .. .....|+++...++++..+++.+...++++..+++.++++++.+.|.+.|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 288 (384)
T 3zrp_A 209 ILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLE 288 (384)
T ss_dssp HHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 54 10 00 1112357788888888888887665567888999999999999999988887
Q ss_pred eeeCC---CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217 315 LVSGG---SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391 (447)
Q Consensus 315 ~~~~~---~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i 391 (447)
+..+. ...+++++.+.. .+..++.+.|.++||.++.+. ..+. +.+|++++..++ ++|++++++.|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~----~~~~--~~iRi~~~~~~~----~e~i~~~~~~l 356 (384)
T 3zrp_A 289 IVARRPESYSNTVTGVILKV--ADPQKVLAGTVNEGVEFAPGV----HPAF--KYFRIGHMGWVT----PNDAIIAISVI 356 (384)
T ss_dssp BSCSSGGGBCSSEEEEECSS--SCHHHHHHHHHTTTCCCEECC----CTTC--CEEEEECCSSCC----HHHHHHHHHHH
T ss_pred EccCcccccCccEEEEECCC--CCHHHHHHHHHHCCEEEecCC----CCCc--CEEEEeccccCC----HHHHHHHHHHH
Confidence 76532 123455566543 577889999988899986432 1111 689999887777 99999999999
Q ss_pred HHHHHHH
Q 013217 392 HEGVEIT 398 (447)
Q Consensus 392 ~~~l~~~ 398 (447)
++++...
T Consensus 357 ~~~l~~~ 363 (384)
T 3zrp_A 357 ERTLRKL 363 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9998754
No 13
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.6e-29 Score=245.98 Aligned_cols=333 Identities=13% Similarity=0.109 Sum_probs=239.0
Q ss_pred eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHH
Q 013217 23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFE 101 (447)
Q Consensus 23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~ 101 (447)
....++...+++.+++++...+.+.| + .. ...+.+.+++++++++|++ ++. .+.+++|++|+..
T Consensus 22 ~l~~~~~~~~~~~v~~a~~~~~~~~~----------~-~~-~~~~~~~~~~~la~~~g~~~~~~---v~~~~g~t~a~~~ 86 (386)
T 2dr1_A 22 KLFTAGPVACFPEVLEIMKVQMFSHR----------S-KE-YRKVHMDTVERLREFLEVEKGEV---LLVPSSGTGIMEA 86 (386)
T ss_dssp EECCSSSCCCCHHHHHHTTSCCCCTT----------S-HH-HHHHHHHHHHHHHHHHTCSSSEE---EEESSCHHHHHHH
T ss_pred eeecCCCcCCcHHHHHHHhccccccc----------C-HH-HHHHHHHHHHHHHHHhCCCCCcE---EEEeCChHHHHHH
Confidence 44457777889999999877654322 1 11 2344556678999999997 331 2334556699999
Q ss_pred HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh-hCCcEEEEcCCCC
Q 013217 102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAY 180 (447)
Q Consensus 102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~-~~~klii~~~~~~ 180 (447)
++.++++|||+|++.++.|.++. +. ..+...|. +++.++++ .++.+|+++|++++++ .++++|++++++|
T Consensus 87 ~~~~l~~~gd~vl~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~n 157 (386)
T 2dr1_A 87 SIRNGVSKGGKVLVTIIGAFGKR---YK---EVVESNGR--KAVVLEYE-PGKAVKPEDLDDALRKNPDVEAVTITYNET 157 (386)
T ss_dssp HHHHHSCTTCEEEEEESSHHHHH---HH---HHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHCTTCCEEEEESEET
T ss_pred HHHHhhcCCCeEEEEcCCchhHH---HH---HHHHHhCC--ceEEEecC-CCCCCCHHHHHHHHhcCCCCcEEEEEeecC
Confidence 99999999999999998876521 00 12233454 55555565 3577999999999953 3799999987666
Q ss_pred CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217 181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 257 (447)
Q Consensus 181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~ 257 (447)
|+ ..|+++|.++|+++|+++++|++|+.|....+... .++|++++|+||++++|.| |++++++ ++.+.
T Consensus 158 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~---~~~di~~~s~sK~~~~~~g~G~~~~~~------~~~~~ 228 (386)
T 2dr1_A 158 STGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDK---WGLDVVFSSSQKAFGVPPGLAIGAFSE------RFLEI 228 (386)
T ss_dssp TTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTT---TTCSEEEEETTSTTCCCSSCEEEEECH------HHHHH
T ss_pred CcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccc---cCCcEEEEeccccccCCCceEEEEECH------HHHHH
Confidence 64 77999999999999999999999987654222111 1479999999999988866 9999987 66655
Q ss_pred hhh---------------cc--CCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217 258 INN---------------AV--FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVSGG 319 (447)
Q Consensus 258 i~~---------------~~--~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 319 (447)
+.. .. .....++++...++++..+++.+... ++++..+++.++++++.+.|.+.|+++..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 308 (386)
T 2dr1_A 229 AEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEP 308 (386)
T ss_dssp HTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCT
T ss_pred HhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCc
Confidence 421 00 01224567777777777788876544 5778889999999999999998888776531
Q ss_pred C--CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 320 S--DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 320 ~--~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
. ..+++++.+. .+.+..++.+.|.++||.+..+..+ ...+.+|++++..++ ++|++++++.|+++++.
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~-----~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 309 GHESPTITAVLTP-PGIKGDEVYEAMRKRGFELAKGYGS-----VKEKTFRIGHMGYMK----FEDIQEMLDNLREVINE 378 (386)
T ss_dssp TCBCSSEEEEECC-TTCCHHHHHHHHHHTTEECEECCGG-----GTTTEEEEECCSSCC----HHHHHHHHHHHHHHHHH
T ss_pred cccCCceEEEEcC-CCCCHHHHHHHHHHCCeEEecCccc-----cCCCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence 1 2455667664 2456788888888889998654322 124589999987677 99999999999998875
Q ss_pred H
Q 013217 398 T 398 (447)
Q Consensus 398 ~ 398 (447)
.
T Consensus 379 ~ 379 (386)
T 2dr1_A 379 L 379 (386)
T ss_dssp H
T ss_pred c
Confidence 4
No 14
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.97 E-value=3.4e-29 Score=246.93 Aligned_cols=336 Identities=12% Similarity=0.088 Sum_probs=239.5
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
+.+.+.++...+++.+++++...+.+.| . ..........++++++++|+++++. .+.+++|++|+.
T Consensus 19 ~~~~~~~g~~~~~~~v~~a~~~~~~~~~----------~--~~~~~~~~~l~~~la~~~g~~~~~~--i~~~~g~t~a~~ 84 (393)
T 2huf_A 19 NKLLMGPGPSNAPQRVLDAMSRPILGHL----------H--PETLKIMDDIKEGVRYLFQTNNIAT--FCLSASGHGGME 84 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTSCCCCTT----------S--HHHHHHHHHHHHHHHHHHTCCCSEE--EEESSCHHHHHH
T ss_pred CeEEecCCCCCCCHHHHHHHHhhhccCC----------C--HHHHHHHHHHHHHHHHHhCCCCCcE--EEEcCcHHHHHH
Confidence 4567778887889999999877654321 1 1122334456688999999976411 233455669999
Q ss_pred HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217 101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180 (447)
Q Consensus 101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~ 180 (447)
.++.++++|||+|+++++.|.++. .. ..+...|. +++.++++ .++.+|++++++++++.+|++|+++.++|
T Consensus 85 ~~~~~~~~~gd~vl~~~~~~~~~~--~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 155 (393)
T 2huf_A 85 ATLCNLLEDGDVILIGHTGHWGDR--SA----DMATRYGA--DVRVVKSK-VGQSLSLDEIRDALLIHKPSVLFLTQGDS 155 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH--HH----HHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHHhCCCCEEEEECCCcchHH--HH----HHHHHcCC--eeEEEeCC-CCCCCCHHHHHHHHhccCCcEEEEEccCC
Confidence 999999999999999998876531 00 01122344 45555565 35689999999999765899999987776
Q ss_pred CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217 181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 257 (447)
Q Consensus 181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~ 257 (447)
|+ ..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||+|.||.| |++++++ ++.+.
T Consensus 156 ptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~sK~l~g~~G~G~~~~~~------~~~~~ 226 (393)
T 2huf_A 156 STGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRW---EIDAMYTGSQKVLGAPPGITPVSFSH------RAVER 226 (393)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSSSTTCCCSSCEEEEECH------HHHHH
T ss_pred CccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhc---CccEEEECCCcccccCCCeEEEEECH------HHHHH
Confidence 65 778999999999999999999999776543222111 479999999999988888 9999987 67666
Q ss_pred hhhc---cCC-------------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217 258 INNA---VFP-------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL 315 (447)
Q Consensus 258 i~~~---~~~-------------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 315 (447)
+... ..+ ...++++...++++..+++.+...++++..+++.++++++.+.|.+.|+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 306 (393)
T 2huf_A 227 YKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFEL 306 (393)
T ss_dssp HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred HhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence 5542 111 123577888888887788876544577888999999999999999888877
Q ss_pred eeCC--CCCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCcc-ccCCCCHHHHHHHHHHH
Q 013217 316 VSGG--SDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAM-TTRGFSEKEFVAIADFI 391 (447)
Q Consensus 316 ~~~~--~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~-~~~g~~~~di~~l~~~i 391 (447)
..+. ..++++++.+. .+.+..++.+.|.+ +||.++.+..+ ...+.+|++++.+ ++ ++|++++++.|
T Consensus 307 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~~-----~~~~~~Ri~~~~~~~~----~e~i~~~~~~l 376 (393)
T 2huf_A 307 YADPKDRLSTVTTIKVP-QGVDWLKAAQYAMKTYLVEISGGLGP-----TAGQVFRIGLMGQNAT----TERVDRVLQVF 376 (393)
T ss_dssp SSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCCGG-----GTTTEEEEECCGGGCS----HHHHHHHHHHH
T ss_pred ccCccccCCcEEEEEcC-CCCCHHHHHHHHHHhCCEEEecCccc-----ccCCEEEEEcccCcCC----HHHHHHHHHHH
Confidence 6531 12335556653 24567888888865 69999654221 1246899998554 45 89999999999
Q ss_pred HHHHHHH
Q 013217 392 HEGVEIT 398 (447)
Q Consensus 392 ~~~l~~~ 398 (447)
+++++..
T Consensus 377 ~~~~~~~ 383 (393)
T 2huf_A 377 QEAVAAV 383 (393)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9988643
No 15
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.97 E-value=1.4e-29 Score=248.32 Aligned_cols=334 Identities=13% Similarity=0.075 Sum_probs=234.3
Q ss_pred hhcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHH
Q 013217 19 QFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSP 97 (447)
Q Consensus 19 ~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~ 97 (447)
.+.+.++.+++..+|+.|++++.+.+...+ +..+ ..+.+.+++++++++|++.+ ++ .+.+++|++
T Consensus 17 ~~~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~~~~~la~~~g~~~~~~~--i~~~~ggt~ 82 (376)
T 3f0h_A 17 FQGMLNFTVGPVMSSEEVRAIGAEQVPYFR-----------TTEF-SSTMLENEKFMLEYAKAPEGSKA--VFMTCSSTG 82 (376)
T ss_dssp TSSCEECSSSSCCCCHHHHHHHTSCCCCCS-----------SHHH-HHHHHHHHHHHHHHHTCCTTCEE--EEESSCHHH
T ss_pred ccCceeecCCCCCCcHHHHHHhcCCCCCCC-----------CHHH-HHHHHHHHHHHHHHhCCCCCceE--EEEcCChhH
Confidence 456789999999999999999976543211 1112 23334566889999999753 22 233456679
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 177 (447)
Q Consensus 98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~ 177 (447)
|+..++.++++|||+|++.++.+.++... ......|. +++.++.+ .++.+|++++++++++ +|++|++++
T Consensus 83 al~~~~~~~~~~gd~vi~~~~~~~~~~~~------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~-~~~~v~~~~ 152 (376)
T 3f0h_A 83 SMEAVVMNCFTKKDKVLVIDGGSFGHRFV------QLCEIHEI--PYVALKLE-HGKKLTKEKLYEYDNQ-NFTGLLVNV 152 (376)
T ss_dssp HHHHHHHHHCCTTCCEEEEESSHHHHHHH------HHHHHTTC--CEEEEECC-TTCCCCHHHHHTTTTS-CCCEEEEES
T ss_pred HHHHHHHhccCCCCeEEEEeCChhhHHHH------HHHHHcCC--ceEEEeCC-CCCCCCHHHHHHhhcc-CceEEEEec
Confidence 99999999999999999988654443110 01223343 44444454 4578999999998766 899999986
Q ss_pred CCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217 178 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 254 (447)
Q Consensus 178 ~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~ 254 (447)
++|++ ..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||+++|+.| |++++++ ++
T Consensus 153 ~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~------~~ 223 (376)
T 3f0h_A 153 DETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNEC---GADVMITGSQKVLACPPGISVIVLAP------RG 223 (376)
T ss_dssp EETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEETTTTTCCCSSCEEEEECH------HH
T ss_pred ccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccccccc---CccEEEecCcccccCCCceEEEEECH------HH
Confidence 66664 789999999999999999999998766432211111 379999999999987777 8888887 66
Q ss_pred HHHhhhccCC----------------CCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEeee
Q 013217 255 ESAINNAVFP----------------GLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVS 317 (447)
Q Consensus 255 ~~~i~~~~~~----------------~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 317 (447)
.+.+.....+ +...+++...++++..+++.+... ++++..++..++++++.+.|.+.|+++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 303 (376)
T 3f0h_A 224 VERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVS 303 (376)
T ss_dssp HHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECC
T ss_pred HHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence 6666542211 123455666667777788776654 46788888899999999999888877765
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 318 GGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 318 ~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+.....+..+. +.+.+..++.+.|.+. ||.++.+.. +...+.+|++++..++ ++|+++++++|+++++
T Consensus 304 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~~g~~-----~~~~~~lRis~~~~~t----~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 304 ESPANGVTSVH--PTTANAYDIFLKLKDEYGIWICPNGG-----EMKDTIFRVGHIGALT----HEDNTTLVNAFKDLQK 372 (376)
T ss_dssp SSBBTTEEEEE--ESSSCHHHHHHHHHHHSSEECEECCG-----GGTTTCEEEECCSSCC----HHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEe--CCCCCHHHHHHHHHHhCCEEEecCcc-----ccCCCEEEEecCCCCC----HHHHHHHHHHHHHHHH
Confidence 32222222222 3355778888888776 999865421 1234589999987777 9999999999998876
No 16
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.97 E-value=3e-29 Score=243.40 Aligned_cols=327 Identities=14% Similarity=0.034 Sum_probs=235.0
Q ss_pred eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217 23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 102 (447)
Q Consensus 23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~ 102 (447)
+.+.++...+++.+++++...+... +++ .. .......++++++++|+++++ .+.+++|++|+..+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~--------~~~---~~-~~~~~~l~~~la~~~g~~~~~---i~~~~g~t~a~~~~ 67 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHH--------RTE---AA-REVFLKARGLLREAFRTEGEV---LILTGSGTLAMEAL 67 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCT--------TSH---HH-HHHHHHHHHHHHHHHTCSSEE---EEEESCHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCCc--------cCH---HH-HHHHHHHHHHHHHHhCCCCce---EEEcCchHHHHHHH
Confidence 5678899999999999998765421 111 11 122234567899999998642 23335666999999
Q ss_pred HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217 103 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 182 (447)
Q Consensus 103 ~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~ 182 (447)
+.++++|||+|++.++.|.++. .. ..+...|. +++.++++ .++.+|++++++ + ++++|++++++||+
T Consensus 68 ~~~~~~~gd~vl~~~~~~~~~~-~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~---~-~~~~v~~~~~~npt 134 (352)
T 1iug_A 68 VKNLFAPGERVLVPVYGKFSER-FY-----EIALEAGL--VVERLDYP-YGDTPRPEDVAK---E-GYAGLLLVHSETST 134 (352)
T ss_dssp HHHHCCTTCEEEEEECSHHHHH-HH-----HHHHHTTC--EEEEEECC-TTCCCCTTTSCC---S-SCSEEEEESEETTT
T ss_pred HHhccCCCCeEEEEeCCchhHH-HH-----HHHHHcCC--ceEEEeCC-CCCCCCHHHHhc---c-CCcEEEEEEecCCc
Confidence 9999999999999998877642 00 01122344 55555565 356789998876 3 79999998777765
Q ss_pred --CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217 183 --DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 257 (447)
Q Consensus 183 --~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~ 257 (447)
..|+++|.++|+++ |+++++|++|+.|....+.... ++|++++|+|||+.||.| |++++++ ++.++
T Consensus 135 G~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~------~~~~~ 205 (352)
T 1iug_A 135 GALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSP------RALER 205 (352)
T ss_dssp TEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECH------HHHHT
T ss_pred ceecCHHHHHHHHHhhCCCCEEEEECCccccCcceecccc---CeeEEEecCcccccCCCceeEEEECH------HHHHH
Confidence 78999999999999 9999999999766443221111 479999999999988888 9999987 44433
Q ss_pred h---------h----hccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217 258 I---------N----NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL 324 (447)
Q Consensus 258 i---------~----~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 324 (447)
+ . ........++++...++++..+++.+... +++..+++.++++++.+.|++.|+++..+....++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 284 (352)
T 1iug_A 206 LKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAV 284 (352)
T ss_dssp CCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTC
T ss_pred hhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeE
Confidence 1 1 11112234677887787777788876543 77888999999999999998888887653213456
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+++.+.. +.+..++.+.|.++||.++.+..+ ...+.+|++++..++ ++|++++++.|+++++.
T Consensus 285 ~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~-----~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 285 AAFYLPE-GVPYARVKEAFAQRGAVIAGGQGP-----LKGKVFRLSLMGAYD----RYEALGVAGMFREVLEE 347 (352)
T ss_dssp EEEECCT-TCCHHHHHHHHHTTTEECEECCGG-----GTTTEEEECCCSSCC----HHHHHHHHHHHHHHHHH
T ss_pred EEEEcCC-CCCHHHHHHHHHHCCEEEEeCCCc-----cCCCEEEEEccccCC----HHHHHHHHHHHHHHHHH
Confidence 6777642 457788999998889998754311 124689999988777 99999999999988764
No 17
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.97 E-value=5.2e-29 Score=245.33 Aligned_cols=336 Identities=14% Similarity=0.088 Sum_probs=238.6
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
..+.+.++...+++.|++++...+.+.+ + .. ........++++++++|.+.++. .+.+++|++|+.
T Consensus 23 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~---------~--~~-~~~~~~~l~~~la~~~~~~~~~~--v~~~~gg~~al~ 88 (393)
T 3kgw_A 23 TRLLLGPGPSNLAPRVLAAGSLRMIGHM---------Q--KE-MLQIMEEIKQGIQYVFQTRNPLT--LVVSGSGHCAME 88 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTCCCCCTT---------S--HH-HHHHHHHHHHHHHHHHTCCCSEE--EEESCCTTTHHH
T ss_pred cceeccCCCCCCCHHHHHHhcccccCcc---------c--HH-HHHHHHHHHHHHHHHhCCCCCcE--EEEeCCcHHHHH
Confidence 4567788888899999999876432211 1 11 12333455678999999875432 233466779999
Q ss_pred HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217 101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180 (447)
Q Consensus 101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~ 180 (447)
.++.++++|||+|++..+.|.++. + ...+...|. +++.++++ .++.+|+++|++++++++|++|+++.++|
T Consensus 89 ~~~~~~~~~gd~vl~~~~~~~~~~---~---~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 159 (393)
T 3kgw_A 89 TALFNLLEPGDSFLTGTNGIWGMR---A---AEIADRIGA--RVHQMIKK-PGEHYTLQEVEEGLAQHKPVLLFLVHGES 159 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHhcCCCCCEEEEEeCCchhHH---H---HHHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHhhCCCcEEEEeccCC
Confidence 999999999999999875542210 0 012234454 45555565 34679999999999877899999987777
Q ss_pred CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217 181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 257 (447)
Q Consensus 181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~ 257 (447)
|+ ..|+++|.++|++||+++++|++|+.|....+.... ++|++++|+||++.|+.| |++++++ ++.+.
T Consensus 160 ptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~g~~~~~~------~~~~~ 230 (393)
T 3kgw_A 160 STGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQ---GIDIMYSSSQKVLNAPPGISLISFND------KAKYK 230 (393)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTT---TCCEEEEESSSTTCCCSSCEEEEECH------HHHHH
T ss_pred cchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhc---CCCEEEecCcccccCCCceeEEEECH------HHHHH
Confidence 65 778999999999999999999998766443322111 479999999999988877 9999987 66666
Q ss_pred hhhccCC----------------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217 258 INNAVFP----------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL 315 (447)
Q Consensus 258 i~~~~~~----------------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 315 (447)
+.....+ ...++++...++++..+++.....++++..+++.++++++.+.|++.|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 310 (393)
T 3kgw_A 231 VYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKF 310 (393)
T ss_dssp HHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred HhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence 6432111 123567788888888888876655678889999999999999999988877
Q ss_pred eeCCC---CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCcc-ccCCCCHHHHHHHHHH
Q 013217 316 VSGGS---DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAM-TTRGFSEKEFVAIADF 390 (447)
Q Consensus 316 ~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~-~~~g~~~~di~~l~~~ 390 (447)
..+.. ...+.++.+. .+.+..++.+.|.+. ||.++.+..+ ...+.+|++++.+ ++ ++|++++++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~-----~~~~~iRi~~~~~~~~----~~~i~~~~~~ 380 (393)
T 3kgw_A 311 FVKDPEIRLPTITTVTVP-AGYNWRDIVSYVLDHFSIEISGGLGP-----TEERVLRIGLLGYNAT----TENVDRVAEA 380 (393)
T ss_dssp SSSSGGGBCSSEEEEECC-TTBCHHHHHHHHHHHHCEECBCCCGG-----GTTTEEEEECCGGGCC----HHHHHHHHHH
T ss_pred ccCChhhcCCeEEEEeCC-CCCCHHHHHHHHHHhCCEEEeCCccc-----CCCCEEEEEecccCCC----HHHHHHHHHH
Confidence 64211 1233445543 355778888888665 9999754321 2346899997443 46 9999999999
Q ss_pred HHHHHHHH
Q 013217 391 IHEGVEIT 398 (447)
Q Consensus 391 i~~~l~~~ 398 (447)
|+++++..
T Consensus 381 l~~~l~~~ 388 (393)
T 3kgw_A 381 LREALQHC 388 (393)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhh
Confidence 99988753
No 18
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.97 E-value=5.5e-29 Score=241.41 Aligned_cols=326 Identities=14% Similarity=0.083 Sum_probs=234.8
Q ss_pred eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCC-cHHHH
Q 013217 23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLS-GSPAN 99 (447)
Q Consensus 23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~s-Gs~a~ 99 (447)
+.+.+++..+|+.|++++.+.+.+. ++ .. ........++++++++|.+ ++ .+..++ |++|+
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~~--------~~---~~-~~~~~~~l~~~la~~~g~~~~~~----~v~~t~g~t~a~ 65 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRGH--------LD---PE-VLRVNRAIQERLAALFDPGEGAL----VAALAGSGSLGM 65 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCCT--------TC---HH-HHHHHHHHHHHHHHHHCCCTTCE----EEEESSCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhcccccc--------cC---HH-HHHHHHHHHHHHHHHhCCCCCCc----eEEEcCCcHHHH
Confidence 5778999999999999998765431 11 11 1233445668999999986 33 233345 56999
Q ss_pred HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217 100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 179 (447)
Q Consensus 100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~ 179 (447)
..++.++++ |+|+++++.|.++ . .. ..+...|. +++.++++ +++.+|++++++.+++.+|++|++++++
T Consensus 66 ~~~~~~~~~--d~vl~~~~~~~~~-~-~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~ 134 (353)
T 2yrr_A 66 EAGLANLDR--GPVLVLVNGAFSQ-R-VA----EMAALHGL--DPEVLDFP-PGEPVDPEAVARALKRRRYRMVALVHGE 134 (353)
T ss_dssp HHHHHTCSC--CCEEEEECSHHHH-H-HH----HHHHHTTC--CEEEEECC-TTSCCCHHHHHHHHHHSCCSEEEEESEE
T ss_pred HHHHHHhcC--CcEEEEcCCCchH-H-HH----HHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHHhCCCCEEEEEccC
Confidence 999988876 8999988877654 1 00 11233454 44555565 4577999999999976579999998777
Q ss_pred CCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217 180 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 254 (447)
Q Consensus 180 ~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~ 254 (447)
||+ ..|+++|.++|+++|+++++|++|..|... .++. ++|++++|+||++.||.| |++++++ ++
T Consensus 135 nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~------~~ 203 (353)
T 2yrr_A 135 TSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLP-----FSMRAMGVDYAFTGSQKCLSAPPGLAPIAASL------EA 203 (353)
T ss_dssp TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC-----CCHHHHTCSEEECCTTSTTCCCSSCEEEEECH------HH
T ss_pred CCcceecCHHHHHHHHHHcCCeEEEEcCccccccc-----ccccccCceEEEecCcccccCCCceEEEEECH------HH
Confidence 765 789999999999999999999998655332 1222 369999999999988777 9999988 66
Q ss_pred HHHhhh--------------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC-
Q 013217 255 ESAINN--------------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG- 319 (447)
Q Consensus 255 ~~~i~~--------------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~- 319 (447)
.+.+.. .......++++...++++..+++.+...++++..+++.++++++.+.|++.|+++..+.
T Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 283 (353)
T 2yrr_A 204 RKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKAS 283 (353)
T ss_dssp HHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSS
T ss_pred HHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCcc
Confidence 655541 00112245777777777777887765555778889999999999999988888876532
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH-HHHHHHHHHHH
Q 013217 320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV-AIADFIHEGVE 396 (447)
Q Consensus 320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~-~l~~~i~~~l~ 396 (447)
..++++++.+. .+.+..++.+.|.++||.+..+..+ ..++.+|++++..++ ++|++ ++++.|+++++
T Consensus 284 ~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~-----~~~~~iRi~~~~~~~----~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 284 PLPTVLVVRPP-EGVDADRLVRALYAEGVAVAGGIGP-----TRGQVLRLGLMGEGA----RREAYQAFLKALDRALA 351 (353)
T ss_dssp BCTTEEEEECC-TTCCHHHHHHHHHHTTEECEECCGG-----GTTTCEEEECSGGGS----CHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHCCEEEeCCccc-----cCCCeEEEecCccCC----HHHHHHHHHHHHHHHHh
Confidence 13455566663 3557788999998899998654322 124579999877776 88998 99999988875
No 19
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=2e-28 Score=241.53 Aligned_cols=332 Identities=13% Similarity=0.083 Sum_probs=233.2
Q ss_pred CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHHHHH
Q 013217 22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANF 100 (447)
Q Consensus 22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~a~~ 100 (447)
.+.+.++...+++.+++++...+.+.| +. . ...+.+.+++++++++|++++ .+ +.+++|++|+.
T Consensus 35 ~~l~~~~~~~~~~~v~~a~~~~~~~~~----------~~-~-~~~~~~~~~~~la~~~g~~~~~~v---~~t~g~t~al~ 99 (393)
T 1vjo_A 35 RLLLGPGPSNAHPSVLQAMNVSPVGHL----------DP-A-FLALMDEIQSLLRYVWQTENPLTI---AVSGTGTAAME 99 (393)
T ss_dssp CEECSSSCCCCCHHHHHHHSSCCCCTT----------SH-H-HHHHHHHHHHHHHHHHTCCCSCEE---EESSCHHHHHH
T ss_pred ceeccCCCCCCCHHHHHHHhccccccc----------CH-H-HHHHHHHHHHHHHHHhCCCCCcEE---EEeCchHHHHH
Confidence 345566777889999999987654321 11 1 233444666899999999764 32 22345569999
Q ss_pred HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217 101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180 (447)
Q Consensus 101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~ 180 (447)
.++.++++|||+|++.++.|.+.. + ...+...|. +++.++++ .++.+|+++|++.+++.++++|+++.++|
T Consensus 100 ~~~~~~~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~n 170 (393)
T 1vjo_A 100 ATIANAVEPGDVVLIGVAGYFGNR---L---VDMAGRYGA--DVRTISKP-WGEVFSLEELRTALETHRPAILALVHAET 170 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHhccCCCCEEEEEcCChhHHH---H---HHHHHHcCC--ceEEEecC-CCCCCCHHHHHHHHhhCCceEEEEeccCC
Confidence 999999999999999998876510 0 012233454 55555565 35779999999999765799999987776
Q ss_pred CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217 181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 257 (447)
Q Consensus 181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~ 257 (447)
|+ ..|+++|.++|+++|+++++|++|+.|..+.+... .++|++++|+||++++|.+ |++++++ ++.+.
T Consensus 171 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~di~~~s~sK~l~~~~~~G~l~~~~------~~~~~ 241 (393)
T 1vjo_A 171 STGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDA---WGVDLAYSCSQKGLGCSPGASPFTMSS------RAIEK 241 (393)
T ss_dssp TTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTT---TTCSEEECCSSSTTCSCSSCEEEEECH------HHHHH
T ss_pred CcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccc---cCccEEEEcCcccccCCCceEEEEECH------HHHHH
Confidence 65 67899999999999999999999986643222111 1479999999999988767 9999988 66666
Q ss_pred hhhc------c-C----------C-CC-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC
Q 013217 258 INNA------V-F----------P-GL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG 318 (447)
Q Consensus 258 i~~~------~-~----------~-~~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 318 (447)
+... . + . .. .|+++...++++..+++.+...++++..+++.++++++.+.|++.|+++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 321 (393)
T 1vjo_A 242 LQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE 321 (393)
T ss_dssp HHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSC
T ss_pred HhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 5321 0 0 0 11 2377777777888888876544577888999999999999999888877653
Q ss_pred CC--CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 319 GS--DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 319 ~~--~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
.. ...+.++.+. .+.+..++.+.|.+. ||.+..+..+ ..++.+|+++..+++ ++++++++++.|++++
T Consensus 322 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~-----~~~~~iRis~~~~~~---~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 322 KEYRLPTLTTVCIP-DGVDGKAVARRLLNEHNIEVGGGLGE-----LAGKVWRVGLMGFNS---RKESVDQLIPALEQVL 392 (393)
T ss_dssp GGGBCSSEEEEECC-TTCCHHHHHHHHHHHHCEECEECCGG-----GTTTEEEEECCGGGC---SHHHHHHHHHHHHHHH
T ss_pred ccccCCcEEEEEcC-CCCCHHHHHHHHHhhCCEEEecCccc-----cCCCEEEEeCCccCC---hHHHHHHHHHHHHHHh
Confidence 11 1234455553 345678888888776 9999654322 124689999544432 2778999999998765
No 20
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.97 E-value=3.4e-29 Score=245.41 Aligned_cols=336 Identities=16% Similarity=0.168 Sum_probs=234.9
Q ss_pred cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHHHHHHHH
Q 013217 27 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTA 105 (447)
Q Consensus 27 ~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~~~~~~a 105 (447)
++..++++.+++++...+.+.+ ++|+..|..+ .......+..++++++++|+++++ +..++| ++|+..++.+
T Consensus 7 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~----i~~~~g~~~a~~~~~~~ 79 (382)
T 4hvk_A 7 TSAKPVDERILEAMLPYMTESF--GNPSSVHSYG-FKAREAVQEAREKVAKLVNGGGGT----VVFTSGATEANNLAIIG 79 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHH-HHHHHHHHHHHHHHHHHTTCTTEE----EEEESSHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHhhc--CCCcccchHH-HHHHHHHHHHHHHHHHHcCCCcCe----EEEECCchHHHHHHHHH
Confidence 4555789999999999887643 5555433222 223344445678999999998753 333555 5899999998
Q ss_pred hc----CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217 106 IL----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 181 (447)
Q Consensus 106 l~----~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~ 181 (447)
+. +|||+|++.++.|+++..... .+...| .+++.++++ +++.+|+++|++++++ +|++|++++++||
T Consensus 80 ~~~~~~~~gd~vi~~~~~~~~~~~~~~-----~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~np 150 (382)
T 4hvk_A 80 YAMRNARKGKHILVSAVEHMSVINPAK-----FLQKQG--FEVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNE 150 (382)
T ss_dssp HHHHHGGGCCEEEEETTCCHHHHHHHH-----HHHHTT--CEEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTT
T ss_pred hhhhhcCCCCEEEECCCCcHHHHHHHH-----HHHhcC--CEEEEeccC-CCCCcCHHHHHHHhcc-CceEEEEECCCCC
Confidence 87 999999999998877642110 111124 355566666 5678999999999987 8999999877776
Q ss_pred C--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHh
Q 013217 182 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 258 (447)
Q Consensus 182 ~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i 258 (447)
+ ..|+++|.++|+++|+ +++|++|+.|....+.... ++|++++|+||+ .||.| |+++++++ . .+
T Consensus 151 tG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~-~g~~g~g~~~~~~~------~--~~ 217 (382)
T 4hvk_A 151 IGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKI---GADMLTISSNDI-YGPKGVGALWIRKE------A--KL 217 (382)
T ss_dssp TCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHH---TCSEEEEESGGG-TSCTTCEEEEEETT------C--CC
T ss_pred ceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhc---CCCEEEEeHHHh-cCCCceEEEEEcCc------c--Cc
Confidence 5 7899999999999999 9999999876543221111 479999999996 46766 99998874 2 22
Q ss_pred hhccCC------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCC--CeeEEecC
Q 013217 259 NNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSD--NHLVLVDL 329 (447)
Q Consensus 259 ~~~~~~------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~v~~ 329 (447)
...... ...++++...++++..+++... .++++..+++.++++++.+.|.+. |+++..+... .+++++.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 296 (382)
T 4hvk_A 218 QPVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRF 296 (382)
T ss_dssp CCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEE
T ss_pred CcccccCCCcCccccCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEE
Confidence 222111 1145677788888877877554 456788899999999999999884 7877653211 22344444
Q ss_pred CCCCCCHHHHHHHHhhcCeEEccCCCCCCCC--C------C------CCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 330 RPMGIDGARVEKILDMASITLNKNSVPGDKS--A------L------VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~--~------~------~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
.+.+..++.+.|.++||.++.+..+.... + + ..+.+|++++..++ ++|++++++.|++++
T Consensus 297 --~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t----~e~i~~~~~~l~~~~ 370 (382)
T 4hvk_A 297 --SYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNT----DEDVDRLLEVLPGVI 370 (382)
T ss_dssp --TTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCC----HHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCC----HHHHHHHHHHHHHHH
Confidence 34577889999999999987543221110 0 0 04689999987777 999999999999998
Q ss_pred HHH
Q 013217 396 EIT 398 (447)
Q Consensus 396 ~~~ 398 (447)
+..
T Consensus 371 ~~~ 373 (382)
T 4hvk_A 371 ERL 373 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 21
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.97 E-value=1.7e-28 Score=241.91 Aligned_cols=330 Identities=13% Similarity=0.075 Sum_probs=233.3
Q ss_pred ecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH
Q 013217 26 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 105 (447)
Q Consensus 26 ~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a 105 (447)
.++...+++.|++++...+.+. +++ .. .......++++++++|++++.+ +.+++|++|+..++.+
T Consensus 14 ~~~~~~~~~~v~~a~~~~~~~~--------~~~---~~-~~~~~~l~~~la~~~g~~~~~v---~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 14 TAGPVNAYPEVLRGLGRTVLYD--------YDP---AF-QLLYEKVVDKAQKAMRLSNKPV---ILHGEPVLGLEAAAAS 78 (392)
T ss_dssp SSSCCCCCHHHHHHTTSCCCCT--------TSH---HH-HHHHHHHHHHHHHHTTCSSCCE---EESSCTHHHHHHHHHH
T ss_pred cCCCcCCCHHHHHHHhcccccc--------ccH---HH-HHHHHHHHHHHHHHhCCCCCEE---EEeCCchHHHHHHHHH
Confidence 4566678999999998765431 111 11 1222345678999999975432 3345666999999999
Q ss_pred hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh-hCCcEEEEcCCCCCC--
Q 013217 106 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAYPR-- 182 (447)
Q Consensus 106 l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~-~~~klii~~~~~~~~-- 182 (447)
+++|||+|+++++.|.++. .. ..+...|. +++.++++ .++.+|++++++++++ .+|++|++++++||+
T Consensus 79 ~~~~gd~Vl~~~~~~~~~~--~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~ 149 (392)
T 2z9v_A 79 LISPDDVVLNLASGVYGKG--FG----YWAKRYSP--HLLEIEVP-YNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGT 149 (392)
T ss_dssp HCCTTCCEEEEESSHHHHH--HH----HHHHHHCS--CEEEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTE
T ss_pred hcCCCCEEEEecCCcccHH--HH----HHHHHcCC--ceEEeeCC-CCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCce
Confidence 9999999999998776541 00 01122343 45555565 3467999999999963 378999998777664
Q ss_pred CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhc
Q 013217 183 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA 261 (447)
Q Consensus 183 ~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~ 261 (447)
..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||++.||.| |++++++ ++.+.+...
T Consensus 150 ~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~G~l~~~~------~~~~~l~~~ 220 (392)
T 2z9v_A 150 INPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDC---KADIYVTGPNKCLGAPPGLTMMGVSE------RAWAKMKAN 220 (392)
T ss_dssp ECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGG---TCSEEEECSSSTTCCCSCCEEEEECH------HHHHHHHTC
T ss_pred eccHHHHHHHHHHcCCeEEEEcccccCCcccccccc---cceEEEecCcccccCCCceeEEEECH------HHHHHhhhc
Confidence 789999999999999999999999766443221111 379999999999988877 9999987 666655421
Q ss_pred c-------------------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC--
Q 013217 262 V-------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS-- 320 (447)
Q Consensus 262 ~-------------------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-- 320 (447)
. .....++++...++++..+++.+...++++..+++.++++++.+.|.+.|+++..+..
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 300 (392)
T 2z9v_A 221 PLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSI 300 (392)
T ss_dssp TTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGG
T ss_pred cCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccc
Confidence 1 0122467777777777778877655457788899999999999999888887765211
Q ss_pred -CCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCc-cccCCCCHHHHHHHHHHHHHHHHH
Q 013217 321 -DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPA-MTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 321 -~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~-~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
..+++++.+. .+.+..++.+.|.+. ||.+..+..+ ...+.+|+++.. .++ ++|++++++.|+++++.
T Consensus 301 ~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~~~-----~~~~~lRi~~~~~~~~----~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 301 ASPTTTAVRTP-DGVDEKALRQAARARYGVVFSSGRGE-----TLGKLTRIGHMGPTAQ----PIYAIAALTALGGAMNA 370 (392)
T ss_dssp BCTTEEEEECC-TTCCHHHHHHHHHHHHCEECEECCGG-----GTTTEEEEECCGGGCS----HHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEECC-CCCCHHHHHHHHHhcCCEEEecCCCC-----CCCCeEEEeCcccccC----HHHHHHHHHHHHHHHHH
Confidence 2455566653 245778888888776 9998654321 124689999644 566 99999999999998864
Q ss_pred H
Q 013217 398 T 398 (447)
Q Consensus 398 ~ 398 (447)
.
T Consensus 371 ~ 371 (392)
T 2z9v_A 371 A 371 (392)
T ss_dssp T
T ss_pred c
Confidence 3
No 22
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.97 E-value=3.4e-28 Score=247.29 Aligned_cols=364 Identities=13% Similarity=0.024 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHHhhcC-eeEecC--CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217 6 PEVCEIITKEKERQFKS-LELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD 82 (447)
Q Consensus 6 ~~~~~~~~~e~~~~~~~-i~l~~~--~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~ 82 (447)
.++++.+.++.....+. ++| ++ ..++++.+.+++...+...+ +++ .......++|+.+++++++++|++
T Consensus 40 ~~~~~~~~~~i~l~gnp~~~l-~s~~t~~~~~~v~~~l~~~~~~~~--~~~-----~~~p~~~~le~~~~~~la~l~g~~ 111 (502)
T 3hbx_A 40 EAAYQIINDELMLDGNPRLNL-ASFVTTWMEPECDKLIMSSINKNY--VDM-----DEYPVTTELQNRCVNMIAHLFNAP 111 (502)
T ss_dssp HHHHHHHHHHGGGSCCGGGBT-TCCSCCCCCHHHHHHHHHTTTCBT--TCT-----TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCCCCCcee-ccccCCCCCHHHHHHHHHHhccCC--CCh-----hcChhHHHHHHHHHHHHHHHhCCC
Confidence 34566666554322222 222 22 35678999999988776532 111 122346788888999999999998
Q ss_pred --CCccceeeecCCcHHHHHHHHHHhcCC--------CC-----EEEEecCCCCcccCCCccccccccccccceeEEEec
Q 013217 83 --ENKWGVNVQPLSGSPANFEVYTAILKP--------HD-----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY 147 (447)
Q Consensus 83 --~~~~~~~v~~~sGs~a~~~~~~al~~p--------gd-----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 147 (447)
++++...+.+++|++||..++.++..+ || +|++..+.|.++. +.+...|. +++.+
T Consensus 112 ~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~--------~~~~~~G~--~~~~v 181 (502)
T 3hbx_A 112 LEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE--------KFARYFEV--ELKEV 181 (502)
T ss_dssp CCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH--------HHHHHTTC--EEEEE
T ss_pred cccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH--------HHHHHcCc--eeEEE
Confidence 544433344567779999888887655 77 8999887776532 23345565 44455
Q ss_pred ccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHh------CCEEEEehhhhccccc--cccCC
Q 013217 148 RLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVA 217 (447)
Q Consensus 148 ~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~------g~~livD~a~~~g~~~--~~~~~ 217 (447)
+++++++.+|+++|++++++ +|++|+++.+++++ ..|+++|.++|+++ |+++++|+||+.+..+ .+..+
T Consensus 182 ~~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~ 260 (502)
T 3hbx_A 182 KLSEGYYVMDPQQAVDMVDE-NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE 260 (502)
T ss_dssp CCBTTBCSCCHHHHHHHCCT-TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC
T ss_pred ecCCCcCcCCHHHHHHHHhh-CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc
Confidence 56654589999999999987 89988887655553 78999999999999 9999999998654321 11111
Q ss_pred CC--CCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHH-HHhhh--ccC------CCCCCCCcHHHHHHHHHHHHHh
Q 013217 218 DP--FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE-SAINN--AVF------PGLQGGPHNHTIGGLAVCLKHA 285 (447)
Q Consensus 218 ~~--~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~-~~i~~--~~~------~~~~g~p~~~~~aal~~al~~~ 285 (447)
.. ..++|++++|+||++.+|.| |+++++++ +.. +.+.. ... ....++.....+++++.+++.+
T Consensus 261 ~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~l 335 (502)
T 3hbx_A 261 WDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK-----EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL 335 (502)
T ss_dssp CSTTSTTEEEEEEETTTTTCCCSSCEEEEESSG-----GGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHH
T ss_pred cccCCCCceEEEECcccccCCCCCeEEEEEeCH-----HHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHH
Confidence 11 23699999999999988877 88888763 222 11111 000 1112444445567777788776
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHCC-cEeeeCCCCCeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCC
Q 013217 286 QSPEFKVYQNKVVSNCRALASRLVELG-YKLVSGGSDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALV 363 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~ 363 (447)
...++.+++++..+++++|.+.|.+.+ ++++.+....+++.+.+.. .+++..++.+.|.+.||.++....|... ..
T Consensus 336 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~--~~ 413 (502)
T 3hbx_A 336 GHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNA--QH 413 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTC--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCccc--CC
Confidence 667788999999999999999999865 8887642344556666543 2356678999999999998654334221 12
Q ss_pred CCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217 364 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL 399 (447)
Q Consensus 364 ~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~ 399 (447)
...+|+++...++ ++|++++++.|++++....
T Consensus 414 ~~~lRisv~~~~t----~edid~li~~L~~~l~~l~ 445 (502)
T 3hbx_A 414 ITVLRVVIREDFS----RTLAERLVIDIEKVMRELD 445 (502)
T ss_dssp CEEEEEECCTTCC----HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCC----HHHHHHHHHHHHHHHHHHH
Confidence 3579999887777 9999999999999987653
No 23
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=1.2e-28 Score=245.11 Aligned_cols=364 Identities=16% Similarity=0.131 Sum_probs=245.5
Q ss_pred CCHHHHHHHHHHHHHhhc------CeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCC-cc-cCchhHHHHHHHHHHHH
Q 013217 4 CNPEVCEIITKEKERQFK------SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGK-RY-YGGNEYIDELETLCQKR 74 (447)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~------~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~-~~-~~g~~~~~~le~~~~~~ 74 (447)
.+|+.++-+.++....++ .+.|..+++ ..|+.|++++...+.+.+ ++++. .+ |+ ....... ...++.
T Consensus 5 ~~~~~~~~~r~~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~-~~~~~~~-~~l~~~ 80 (420)
T 1t3i_A 5 QIPSLAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLS-VRATDAY-EAVRNK 80 (420)
T ss_dssp --CCHHHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHH-HHHHHHH-HHHHHH
T ss_pred cchHHHHHHHHhCCccccccCCCceEEecCCccCCCCHHHHHHHHHHHHhcc--CCCCcccchHH-HHHHHHH-HHHHHH
Confidence 345555555443222223 567765555 568999999988876532 23321 11 21 1111222 245678
Q ss_pred HHHHcCC-CCCccceeeecCCcHHHHHHHHHHh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217 75 ALAAFNL-DENKWGVNVQPLSGSPANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 149 (447)
Q Consensus 75 ~~~~~g~-~~~~~~~~v~~~sGs~a~~~~~~al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 149 (447)
+++++|. +++.+ +.+++|++|+..++.++ ++|||+|++.++.|.+...... ..+...|. +++.+++
T Consensus 81 la~~~~~~~~~~v---~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~ 151 (420)
T 1t3i_A 81 VAKFINARSPREI---VYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQ----MVAAKTGA--VLKFVQL 151 (420)
T ss_dssp HHHHTTCSCGGGE---EEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHH----HHHHHHCC--EEEEECB
T ss_pred HHHHcCCCCCCeE---EEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHH----HHHHhcCc--EEEEecc
Confidence 9999998 44432 33455669999999999 8999999999998877521100 01123343 5556556
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEE
Q 013217 150 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 227 (447)
Q Consensus 150 ~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~ 227 (447)
+ +++.+|++++++++++ +|++|++++++||+ ..|+++|.++|+++|+++|+|++|+.|....+.... +.|+++
T Consensus 152 ~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~ 226 (420)
T 1t3i_A 152 D-EQESFDLEHFKTLLSE-KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI---DCDWLV 226 (420)
T ss_dssp C-TTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEE
T ss_pred C-CCCCcCHHHHHHhhCC-CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhc---CCCEEE
Confidence 5 5678999999999987 89999998777664 789999999999999999999999876442111111 479999
Q ss_pred eCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCC--------------------CCCCCcHHHHHHHHHHHHHhc
Q 013217 228 TTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPG--------------------LQGGPHNHTIGGLAVCLKHAQ 286 (447)
Q Consensus 228 ~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~--------------------~~g~p~~~~~aal~~al~~~~ 286 (447)
+|+||.+ ||.| |++++++ ++.+++......+ ..|+++...++++..+++.+.
T Consensus 227 ~s~sK~~-~~~g~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 299 (420)
T 1t3i_A 227 ASGHKMC-APTGIGFLYGKE------EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT 299 (420)
T ss_dssp EEGGGTT-SCTTCEEEEECH------HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred Eehhhhc-CCCceEEEEEch------HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence 9999954 6665 9999987 7777765543221 135677777777776777665
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC----CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--
Q 013217 287 SPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS----DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-- 359 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-- 359 (447)
..++++..++..++++.+.+.|++. |++++.+.. ...++++.+. +.+..++.+.|.++||.+..+..+...
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 377 (420)
T 1t3i_A 300 DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA--GLHASDVATMVDQDGIAIRSGHHCTQPLH 377 (420)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET--TBCHHHHHHHHHTTTEECBCSCTTCHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEEC--CCCHHHHHHHHHHCCeEEeeccccchHHH
Confidence 4457788889999999999999885 888775421 2444555554 346778889999999999654211000
Q ss_pred CCCC-CCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 360 SALV-PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 360 ~~~~-~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
..+. ++.+|++++..++ ++|+++++++|+++++..
T Consensus 378 ~~~g~~~~iRis~~~~~~----~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 378 RLFDASGSARASLYFYNT----KEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp HHTTCCCCEEEECCTTCC----HHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCCeEEEecCCCCC----HHHHHHHHHHHHHHHHHh
Confidence 0011 4689999887777 999999999999887643
No 24
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.97 E-value=3e-28 Score=240.47 Aligned_cols=334 Identities=13% Similarity=0.071 Sum_probs=232.9
Q ss_pred CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHHHHH
Q 013217 22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANF 100 (447)
Q Consensus 22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~a~~ 100 (447)
.+.+.++...+++.+++++...+.+.| ....+......++.+++++|.+++ ++ +.+++|++|+.
T Consensus 19 ~~~~~~~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~~~v---~~~~g~t~al~ 83 (396)
T 2ch1_A 19 KIMMGPGPSNCSKRVLTAMTNTVLSNF------------HAELFRTMDEVKDGLRYIFQTENRATM---CVSGSAHAGME 83 (396)
T ss_dssp CBCCSSSSCCCCHHHHHHTTSCCCCTT------------CHHHHHHHHHHHHHHHHHHTCCCSCEE---EESSCHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhccccccCC------------ChhHHHHHHHHHHHHHHHhCCCCCcEE---EECCcHHHHHH
Confidence 355556666789999999876543321 111223333556789999999875 22 22344569999
Q ss_pred HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217 101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180 (447)
Q Consensus 101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~ 180 (447)
.++.++++|||+|++.++.|.++... ..+...|. +++.++++ .++.+|++++++++++.++++|+++.++|
T Consensus 84 ~~~~~~~~~gd~vl~~~~~~~~~~~~------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~n 154 (396)
T 2ch1_A 84 AMLSNLLEEGDRVLIAVNGIWAERAV------EMSERYGA--DVRTIEGP-PDRPFSLETLARAIELHQPKCLFLTHGDS 154 (396)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHHHH------HHHHHTTC--EEEEEECC-TTSCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhcCCCCeEEEEcCCcccHHHH------HHHHHcCC--ceEEecCC-CCCCCCHHHHHHHHHhCCCCEEEEECCCC
Confidence 99999999999999999887764200 01234454 45555565 35789999999999765799999987776
Q ss_pred CC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH
Q 013217 181 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 257 (447)
Q Consensus 181 ~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~ 257 (447)
|+ ..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||++.||.| |++++++ ++.+.
T Consensus 155 ptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~~ 225 (396)
T 2ch1_A 155 SSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISP------KALDV 225 (396)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECH------HHHHH
T ss_pred CCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhc---CcCEEEEcCCccccCCCCeEEEEECH------HHHHh
Confidence 65 778999999999999999999998866432211111 379999999999988877 9999887 55555
Q ss_pred hhhc-------c---------C------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe
Q 013217 258 INNA-------V---------F------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL 315 (447)
Q Consensus 258 i~~~-------~---------~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 315 (447)
+... . . ....++++...++++..+++.....++++..+++.++++++.+.|.+.|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 305 (396)
T 2ch1_A 226 IRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDI 305 (396)
T ss_dssp HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred hhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 4321 0 0 1124567777777777788776445677888999999999999998888877
Q ss_pred eeCCC---CCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCc-cccCCCCHHHHHHHHHH
Q 013217 316 VSGGS---DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPA-MTTRGFSEKEFVAIADF 390 (447)
Q Consensus 316 ~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~-~~~~g~~~~di~~l~~~ 390 (447)
+.+.. ...++++.+. .+.+..++.+.|.+ +||.+..+..+ ..++.+|++++. .++ ++|++++++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~~-----~~~~~iRi~~~~~~~~----~e~i~~~~~~ 375 (396)
T 2ch1_A 306 FVKDPRHRLPTVTGIMIP-KGVDWWKVSQYAMNNFSLEVQGGLGP-----TFGKAWRVGIMGECST----VQKIQFYLYG 375 (396)
T ss_dssp SSCSGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCBCCBCCCGG-----GTTTEEEEECCGGGCS----HHHHHHHHHH
T ss_pred ccCCccccCCceEEEEcC-CCCCHHHHHHHHHHhCCEEEecCccc-----cCCCEEEEECCCCcCC----HHHHHHHHHH
Confidence 65321 1124556553 35677888888865 59998653211 234689999844 345 8999999999
Q ss_pred HHHHHHHH
Q 013217 391 IHEGVEIT 398 (447)
Q Consensus 391 i~~~l~~~ 398 (447)
|+++++..
T Consensus 376 l~~~l~~~ 383 (396)
T 2ch1_A 376 FKESLKAT 383 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988753
No 25
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=3e-28 Score=240.97 Aligned_cols=346 Identities=16% Similarity=0.123 Sum_probs=239.0
Q ss_pred CeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCc-ccCchhHHHHHHHHHHHHHHHHcCC-CCCccceeeecCCcHHH
Q 013217 22 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSPA 98 (447)
Q Consensus 22 ~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~le~~~~~~~~~~~g~-~~~~~~~~v~~~sGs~a 98 (447)
.+.|..+.+ ..|+.+++++.+.+.+.+ ++++.. +..+.. ........++++++++|. +++.+ +.+++|++|
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~~~v---~~~~g~t~a 97 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQ-ATEKMENVRKRASLFINARSAEEL---VFVRGTTEG 97 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHH-HHHHHHHHHHHHHHHTTCSCGGGE---EEESSHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHH-HHHHHHHHHHHHHHHcCCCCCCeE---EEeCChhHH
Confidence 466655444 578999999998887532 233221 111111 122233456789999998 44432 223455699
Q ss_pred HHHHHHHh----cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217 99 NFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 99 ~~~~~~al----~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii 174 (447)
+..++.++ ++|||+|++.++.|.+.+.... ..+...|. +++.++++ +++.+|+++|++++++ +|++|+
T Consensus 98 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~l~~-~~~~v~ 169 (406)
T 1kmj_A 98 INLVANSWGNSNVRAGDNIIISQMEHHANIVPWQ----MLCARVGA--ELRVIPLN-PDGTLQLETLPTLFDE-KTRLLA 169 (406)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHH----HHHHHHTC--EEEEECBC-TTSCBCGGGHHHHCCT-TEEEEE
T ss_pred HHHHHHHhhhhcCCCCCEEEEecccchHHHHHHH----HHHHhCCC--EEEEEecC-CCCCcCHHHHHHHhcc-CCeEEE
Confidence 99999999 8999999999998877642110 01223343 55555565 4578999999999987 899999
Q ss_pred EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217 175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 251 (447)
Q Consensus 175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~ 251 (447)
++++++++ ..|+++|.++|+++|+++++|++|+.|....+.... +.|++++|+||++ ||.| |++++++
T Consensus 170 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~---~~d~~~~s~~K~~-g~~G~G~~~~~~----- 240 (406)
T 1kmj_A 170 ITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DCDFYVFSGHKLY-GPTGIGILYVKE----- 240 (406)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGTT-SCTTCEEEEECH-----
T ss_pred EeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCccccc---CCCEEEEEchhcc-CCCCcEEEEEeH-----
Confidence 88766664 789999999999999999999999776432111100 4799999999987 7777 9999987
Q ss_pred hhHHHHhhhccCCC---------------------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217 252 VELESAINNAVFPG---------------------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE 310 (447)
Q Consensus 252 ~~~~~~i~~~~~~~---------------------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 310 (447)
++.+.+......+ ..|+++...++++..+++.+...++++..+++.++++++.+.|++
T Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 319 (406)
T 1kmj_A 241 -ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES 319 (406)
T ss_dssp -HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc
Confidence 7777665433211 135677778877777787765446677888889999999999988
Q ss_pred C-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--CCC-CCCeEEEecCccccCCCCHHHHHH
Q 013217 311 L-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SAL-VPGGIRIGSPAMTTRGFSEKEFVA 386 (447)
Q Consensus 311 ~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~~~-~~~~iRig~~~~~~~g~~~~di~~ 386 (447)
. |+++..+.....++++.+. +.+..++.+.|.++||.+..+...... ..+ .++.+|++++..++ ++|+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t----~~~i~~ 393 (406)
T 1kmj_A 320 VPDLTLYGPQNRLGVIAFNLG--KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT----HEEVDR 393 (406)
T ss_dssp STTEEEESCTTCCSEEEEEET--TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCC----HHHHHH
T ss_pred CCCeEEecCCCcCCEEEEEEC--CCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCC----HHHHHH
Confidence 5 8887654212344555553 456778889999999998653211000 001 14689999988777 999999
Q ss_pred HHHHHHHHHHH
Q 013217 387 IADFIHEGVEI 397 (447)
Q Consensus 387 l~~~i~~~l~~ 397 (447)
+++.|+++++.
T Consensus 394 ~~~~l~~~~~~ 404 (406)
T 1kmj_A 394 LVTGLQRIHRL 404 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 26
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=1e-28 Score=243.97 Aligned_cols=332 Identities=20% Similarity=0.223 Sum_probs=237.6
Q ss_pred eeEecCCCC----CCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217 23 LELIASENF----TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 97 (447)
Q Consensus 23 i~l~~~~n~----~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~ 97 (447)
|++..+ ++ .++.+.+++...+.. |..++++.++..| .+...++ ++++++++|.+. .+.++||++
T Consensus 46 id~~~~-~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~~~~~-----~i~~~sGt~ 114 (399)
T 3tqx_A 46 LNFCAN-NYLGLADHPALIKTAQTVVEQ-YGFGMASVRFICGTQTIHKEL----EKDISEFLGTDD-----TILYSSCFD 114 (399)
T ss_dssp EECSSC-CTTSCTTCHHHHHHHHHHHHH-HCSCCCSCCCCCCCBHHHHHH----HHHHHHHHTCSE-----EEEESCHHH
T ss_pred EEeecc-CcccccCCHHHHHHHHHHHHH-hCCCCCCcCccccCchHHHHH----HHHHHHHHCCCc-----EEEECchHH
Confidence 555555 43 368999999887764 4455555555333 3334444 468888999863 455689999
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcE
Q 013217 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKL 172 (447)
Q Consensus 98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~kl 172 (447)
|+..++.++++|||+|++..+.|+++.. .+...|. +++.++. +|++++++++++. ++++
T Consensus 115 a~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 115 ANGGLFETLLGPEDAIISDELNHASIID--------GIRLCKA--QRYRYKN------NAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHSCCS--EEEEECT------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred HHHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCC--ceeEeCC------CCHHHHHHHHHhhhccCCCceE
Confidence 9999999999999999999998877532 2334454 4444432 5778999888764 7899
Q ss_pred EEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC----CC-CCcccEEEeCCCcccCCCCCceEEee
Q 013217 173 IIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA----DP-FKYCDVVTTTTHKSLRGPRGGMIFFK 245 (447)
Q Consensus 173 ii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~----~~-~~~~Di~~~s~~K~l~Gp~gG~i~~~ 245 (447)
|++++++||+ ..|+++|.++|+++|+++++|++|+.|+....... .. ....|++++|+||+++|++||+++++
T Consensus 179 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~ 258 (399)
T 3tqx_A 179 IATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGH 258 (399)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEEC
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcC
Confidence 9998777775 77899999999999999999999876654321100 01 12468999999999988999999998
Q ss_pred cCCcchhhHHHHhhhccCC-CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217 246 KDPVLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL 324 (447)
Q Consensus 246 ~~~~~~~~~~~~i~~~~~~-~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 324 (447)
+ ++.+.+.....+ ...++++...+++...+++... .+.++..+++.++++++.+.|++.|+++.. ....+
T Consensus 259 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~ 329 (399)
T 3tqx_A 259 K------EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVP--GNHPI 329 (399)
T ss_dssp H------HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCC--CSSSE
T ss_pred H------HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCE
Confidence 8 677766543211 1234566667667667777653 446788899999999999999998888763 23456
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+++.+.. ..+..++.+.|.++||.+.....|.. +...+.+|++++..++ ++|++++++.|+++++.
T Consensus 330 ~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 330 IPVMLGD-AQLATNMADHLLQEGIYVVGFSYPVV--PMGKARIRVQMSAVHT----QQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp EEEEEEC-HHHHHHHHHHHHHTTEECCEECTTTS--CTTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC-HHHHHHHHHHHHHCCCEEeeeCCCCC--CCCCceEEEEeecCCC----HHHHHHHHHHHHHHHHH
Confidence 6666542 22456788888889999875322211 2234589999887666 99999999999998874
No 27
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.97 E-value=2.3e-28 Score=238.24 Aligned_cols=331 Identities=15% Similarity=0.111 Sum_probs=230.3
Q ss_pred CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCc-h-hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217 22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-N-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 99 (447)
Q Consensus 22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~-~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~ 99 (447)
.+++.++...+++.|++++.+.+.+ + ++. . +...+ .++++++++|. ++...-.+.+++|++|+
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~----l~~~la~~~g~-~~~~~~v~~~~g~t~a~ 69 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDSCT---------W-DDDYNIGVVEQ----IRQQLTALATA-SEGYTSVLLQGSGSYAV 69 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCCCT---------T-SHHHHTTTHHH----HHHHHHHHHCS-SSSEEEEEEESCHHHHH
T ss_pred cccccCCCcCCCHHHHHHHhhhhcC---------C-CHHHHHHHHHH----HHHHHHHHhCC-CCcCcEEEEecChHHHH
Confidence 4778888777899999998763211 1 110 0 22333 44788899993 32110123345667999
Q ss_pred HHHHHHhcCCCCEEEEec-CCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEcC
Q 013217 100 FEVYTAILKPHDRIMGLD-LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGA 177 (447)
Q Consensus 100 ~~~~~al~~pgd~Vl~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-~~klii~~~ 177 (447)
..++.+++++||+|++.+ +.|++.+. ..+...|. +++.++++ .++.+|+++|++++++. ++++|+++.
T Consensus 70 ~~~~~~~~~~gd~vi~~~~~~~~~~~~-------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~ 139 (366)
T 1m32_A 70 EAVLGSALGPQDKVLIVSNGAYGARMV-------EMAGLMGI--AHHAYDCG-EVARPDVQAIDAILNADPTISHIAMVH 139 (366)
T ss_dssp HHHHHHSCCTTCCEEEEESSHHHHHHH-------HHHHHHTC--CEEEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHhcCCCCeEEEEeCCCccHHHH-------HHHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhcCCCeEEEEEec
Confidence 999999999999988775 44443210 11223344 44455555 45779999999999874 588888876
Q ss_pred CCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH
Q 013217 178 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 254 (447)
Q Consensus 178 ~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~ 254 (447)
+++|+ ..|+++|.++|+++|+++++|++|+.|....+.... +.|++++|+||++.||.| |++++++ ++
T Consensus 140 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~~K~~~~~~g~G~~~~~~------~~ 210 (366)
T 1m32_A 140 SETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAAL---HIDYLISSANKCIQGVPGFAFVIARE------QK 210 (366)
T ss_dssp EETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEH------HH
T ss_pred ccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCcccccc---CccEEEecCcccccCCCceEEEEECH------HH
Confidence 66654 789999999999999999999999866543222111 479999999999988888 9999998 66
Q ss_pred HHHhhhccC-----------------CCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHCCcEee
Q 013217 255 ESAINNAVF-----------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLV 316 (447)
Q Consensus 255 ~~~i~~~~~-----------------~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~ 316 (447)
.+.+..... ....++++...++++..+++.+...+ +++..+++.++++++.+.|++.|+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 290 (366)
T 1m32_A 211 LAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTL 290 (366)
T ss_dssp HTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred HHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeec
Confidence 655543210 11124677777777777888765444 677889999999999999988888765
Q ss_pred eCC--CCCeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 317 SGG--SDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 317 ~~~--~~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
.+. ....++++.+.. .+.+..++.+.|.++||.+..+.. +..+.+|++++..++ ++|+++++++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~------~~~~~iRi~~~~~~~----~~~i~~~~~~l~~ 360 (366)
T 1m32_A 291 LDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKV------SQSDCFRIGNIGEVY----AADITALLTAIRT 360 (366)
T ss_dssp SCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCC------SSSCEEEEECCSSCC----HHHHHHHHHHHHH
T ss_pred cCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcC------CCCCEEEEecCCCCC----HHHHHHHHHHHHH
Confidence 431 123466777642 145678899999889999865321 134689999988777 9999999999988
Q ss_pred HHH
Q 013217 394 GVE 396 (447)
Q Consensus 394 ~l~ 396 (447)
+++
T Consensus 361 ~~~ 363 (366)
T 1m32_A 361 AMY 363 (366)
T ss_dssp HCT
T ss_pred HHH
Confidence 754
No 28
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.8e-28 Score=242.91 Aligned_cols=341 Identities=13% Similarity=0.067 Sum_probs=234.6
Q ss_pred CeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHHH
Q 013217 22 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPAN 99 (447)
Q Consensus 22 ~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a~ 99 (447)
.+.|..+.+ .+++.|++++...+.+.+ +++...|..+.. ........++++++++|++++.+ .+++| ++++
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~~v----~~~~g~t~al 99 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSG--ASTVGAHPSARR-SAAVLDAAREAVADLVNADPGGV----VLGADRAVLL 99 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCC--SSSCSSSHHHHH-HHHHHHHHHHHHHHHHTCCGGGE----EEESCHHHHH
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcC--CCCCCccHHHHH-HHHHHHHHHHHHHHHhCCCCCeE----EEeCChHHHH
Confidence 455554444 578999999998886532 334333321211 12233356688999999976532 23555 5888
Q ss_pred HHHHHHh---cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217 100 FEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 176 (447)
Q Consensus 100 ~~~~~al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~ 176 (447)
..++.++ +++||+|+++++.|.++...... .....|. +++.++++++++.+|+++|++++++ +|++|+++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~----~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 172 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLR----AAHRYGA--KVKWAEVDIETGELPTWQWESLISK-STRLVAVN 172 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHH----HHHHHBC--EEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEE
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHH----HHHhcCC--eEEEEecCcccCCcCHHHHHHHhCC-CceEEEEe
Confidence 8888887 79999999999988776421100 0011343 5566666655678999999999986 89999998
Q ss_pred CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCc-eEEeecCCcchhh
Q 013217 177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVE 253 (447)
Q Consensus 177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG-~i~~~~~~~~~~~ 253 (447)
.++|++ ..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||++ ||++| ++++++ +
T Consensus 173 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~~K~~-g~~~G~~~~~~~------~ 242 (406)
T 3cai_A 173 SASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRET---DADVVTVNAHAWG-GPPIGAMVFRDP------S 242 (406)
T ss_dssp SBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHH---CCSEEEEEGGGGT-SCSCEEEEESCH------H
T ss_pred CCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhc---CCCEEEeehhhhc-CCCcCeEEEEeh------H
Confidence 777764 789999999999999999999999876542221111 4799999999976 57688 999987 6
Q ss_pred HHHHhhhccC--C------CCCCCCcHHHHHHHHHHHHHhcChh--------------HHHHHHHHHHHHHHHHHHHHHC
Q 013217 254 LESAINNAVF--P------GLQGGPHNHTIGGLAVCLKHAQSPE--------------FKVYQNKVVSNCRALASRLVEL 311 (447)
Q Consensus 254 ~~~~i~~~~~--~------~~~g~p~~~~~aal~~al~~~~~~~--------------~~~~~~~~~~~~~~l~~~L~~~ 311 (447)
+.+++..... . ...|+++...++++..+++.+...+ +++..+++.++++++.+.|++.
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (406)
T 3cai_A 243 VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL 322 (406)
T ss_dssp HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 7666654321 0 1146778888877777887765432 5777888889999999999884
Q ss_pred -CcEeeeCC-CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCC-----CCCCCCCeEEEecCccccCCCCHHHH
Q 013217 312 -GYKLVSGG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-----KSALVPGGIRIGSPAMTTRGFSEKEF 384 (447)
Q Consensus 312 -g~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~-----~~~~~~~~iRig~~~~~~~g~~~~di 384 (447)
|+++..+. ....++++.+. +.+..++.+.|.++||.++.+. |.. ..+...+.+|++++..++ ++|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gi~v~~g~-~~~~~~~~g~~~~~~~iRis~~~~~t----~e~i 395 (406)
T 3cai_A 323 PLVMLIGRPEAQIPVVSFAVH--KVPADRVVQRLADNGILAIANT-GSRVLDVLGVNDVGGAVTVGLAHYST----MAEV 395 (406)
T ss_dssp TTEEECCCCSSBCSEEEEEET--TBCHHHHHHHHHHTTEECEECC-SCHHHHHHTTTTTTCCEEEECCTTCC----HHHH
T ss_pred CCeEEcCCccccCCEEEEEEC--CcCHHHHHHHHHHCCcEEecCC-hHHHHHHcCCCCCCCeEEEEeecCCC----HHHH
Confidence 78776532 11234455543 3567889899989999987543 100 000123579999988777 9999
Q ss_pred HHHHHHHHH
Q 013217 385 VAIADFIHE 393 (447)
Q Consensus 385 ~~l~~~i~~ 393 (447)
+++++.|++
T Consensus 396 ~~~~~~l~~ 404 (406)
T 3cai_A 396 DQLVRALAS 404 (406)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998864
No 29
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.8e-27 Score=234.39 Aligned_cols=325 Identities=16% Similarity=0.072 Sum_probs=228.3
Q ss_pred CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc
Q 013217 28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 107 (447)
Q Consensus 28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~ 107 (447)
....++|.+.+++...+.+.+ +++. . + ....++++.+++++++++|++++++ +.+++|++|+..++.++.
T Consensus 38 ~~~~~~~~v~~a~~~~~~~~~--~~~~-~-~---~~~~~~~~~l~~~la~~~~~~~~~i---~~~~ggt~a~~~~~~~~~ 107 (397)
T 3f9t_A 38 MCSNVLPITRKIVDIFLETNL--GDPG-L-F---KGTKLLEEKAVALLGSLLNNKDAYG---HIVSGGTEANLMALRCIK 107 (397)
T ss_dssp SCCCCCTHHHHHHHHHTTCCT--TSGG-G-B---HHHHHHHHHHHHHHHHHTTCTTCEE---EEESCHHHHHHHHHHHHH
T ss_pred ecCCCcHHHHHHHHHHHhhcC--CCcc-c-C---hhHHHHHHHHHHHHHHHhCCCCCCE---EEecCcHHHHHHHHHHHH
Confidence 344567899999988776532 2221 1 1 1245666677789999999987532 334566699999999887
Q ss_pred CC-------------CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217 108 KP-------------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 108 ~p-------------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii 174 (447)
.+ ||+|++..+.|.++.. .+...|. +++.++++ +++.+|+++|++++++.++++|+
T Consensus 108 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~ 176 (397)
T 3f9t_A 108 NIWREKRRKGLSKNEHPKIIVPITAHFSFEK--------GREMMDL--EYIYAPIK-EDYTIDEKFVKDAVEDYDVDGII 176 (397)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEETTCCTHHHH--------HHHHHTC--EEEEECBC-TTSSBCHHHHHHHHHHSCCCEEE
T ss_pred HHHHhhhhhcccCCCCeEEEECCcchhHHHH--------HHHHcCc--eeEEEeeC-CCCcCCHHHHHHHHhhcCCeEEE
Confidence 66 9999999998877532 2334454 55566666 45789999999999865789888
Q ss_pred EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC-------CCCCC---cccEEEeCCCcccCCC-CCce
Q 013217 175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-------ADPFK---YCDVVTTTTHKSLRGP-RGGM 241 (447)
Q Consensus 175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-------~~~~~---~~Di~~~s~~K~l~Gp-~gG~ 241 (447)
++.+++++ ..|+++|.++|++||+++++|++|..+....... ..++. ++|++++|+||++.+| +.|+
T Consensus 177 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~g~ 256 (397)
T 3f9t_A 177 GIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGG 256 (397)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSCEE
T ss_pred EECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCCceE
Confidence 88666664 7799999999999999999999986554322110 01111 5799999999998655 4588
Q ss_pred EEeecCCcchhhHHHHhhhccCCCC--------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc
Q 013217 242 IFFKKDPVLGVELESAINNAVFPGL--------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY 313 (447)
Q Consensus 242 i~~~~~~~~~~~~~~~i~~~~~~~~--------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 313 (447)
++++++ .+.+.+... .+.. .|+++.....+.++++..+...+++++.+++.++++++.+.|++.|+
T Consensus 257 ~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 330 (397)
T 3f9t_A 257 ILFKDI-----GYKRYLDVD-APYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNF 330 (397)
T ss_dssp EEESSG-----GGGGGTCEE-CTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCH-----HHHHhhccC-CccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 888764 444444321 1111 13433334555555666555556788889999999999999999888
Q ss_pred EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
+++.+ ...+++++.+. +..++.+.|.++||.++.+. .++.+|++++..++ ++|++++++.|++
T Consensus 331 ~~~~~-~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~~~--------~~~~~Ri~~~~~~~----~e~i~~~~~~l~~ 393 (397)
T 3f9t_A 331 KPVIE-PILNIVAIEDE----DYKEVCKKLRDRGIYVSVCN--------CVKALRIVVMPHIK----REHIDNFIEILNS 393 (397)
T ss_dssp CBSSC-CSSSEEEEECT----THHHHHHHHHHTTCBCEECS--------SSSEEEEECCTTCC----HHHHHHHHHHHHH
T ss_pred EEEcC-CCccEEEEEeC----CHHHHHHHHHhCCeEEeccC--------CCCEEEEEEcCCCC----HHHHHHHHHHHHH
Confidence 76654 33455666653 26788888988999986532 13689999987777 9999999999988
Q ss_pred HHH
Q 013217 394 GVE 396 (447)
Q Consensus 394 ~l~ 396 (447)
+++
T Consensus 394 ~l~ 396 (397)
T 3f9t_A 394 IKR 396 (397)
T ss_dssp HC-
T ss_pred hhC
Confidence 764
No 30
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=2.7e-28 Score=239.33 Aligned_cols=337 Identities=15% Similarity=0.144 Sum_probs=233.0
Q ss_pred CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc
Q 013217 28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 107 (447)
Q Consensus 28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~ 107 (447)
+...+|+.|++++...+.+.+ ++++..|..+... .......++++++++|++++.+ +.+++|++|+..++.++.
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~v---~~~~g~t~a~~~~~~~l~ 81 (382)
T 4eb5_A 8 SAKPVDERILEAMLPYMTESF--GNPSSVHSYGFKA-REAVQEAREKVAKLVNGGGGTV---VFTSGATEANNLAIIGYA 81 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHHH-HHHHHHHHHHHHHHHTCTTEEE---EEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcc--CCCCCCcHHHHHH-HHHHHHHHHHHHHHhCCCCCeE---EEcCchHHHHHHHHHHHH
Confidence 445789999999998886532 4454433322222 2333456688999999976432 333555699999999987
Q ss_pred ----CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-
Q 013217 108 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR- 182 (447)
Q Consensus 108 ----~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~- 182 (447)
+|||+|++.++.|.++..... .+...|. +++.++++ +++.+|+++|++++++ +|++|++++++||+
T Consensus 82 ~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG 152 (382)
T 4eb5_A 82 MRNARKGKHILVSAVEHMSVINPAK-----FLQKQGF--EVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEIG 152 (382)
T ss_dssp HHHGGGCCEEEEETTCCHHHHHHHH-----HHTTTTC--EEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTTC
T ss_pred hhccCCCCEEEECCCcchHHHHHHH-----HHHhCCc--EEEEeccC-CCCccCHHHHHHHhcC-CCeEEEEeccCCCcc
Confidence 899999999998876532110 0112343 55666666 4678999999999987 89999888777764
Q ss_pred -CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhh
Q 013217 183 -DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN 260 (447)
Q Consensus 183 -~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~ 260 (447)
..|+++|.++|+++|++ ++|++|+.|....+.... ++|++++|+||+ .||.| |+++++++ . .+..
T Consensus 153 ~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~---~~di~~~s~sK~-~g~~g~G~~~~~~~------~--~l~~ 219 (382)
T 4eb5_A 153 TIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKI---GADMLTISSNDI-YGPKGVGALWIRKE------A--KLQP 219 (382)
T ss_dssp BBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHH---TCSEEEEETGGG-TCCSSCEEEEEETT------C--CCCC
T ss_pred ccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCcccc---CCCEEEeehHHh-cCCCceEEEEEccc------c--ccCc
Confidence 78999999999999999 999999765432111000 479999999997 57776 99998874 1 1221
Q ss_pred ccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC--CCeeEEecCCC
Q 013217 261 AVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS--DNHLVLVDLRP 331 (447)
Q Consensus 261 ~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~v~~~~ 331 (447)
... ....++++...++++..+++.+. .++++..+++.++++++.+.|.+. |+++..+.. ..+++++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~- 297 (382)
T 4eb5_A 220 VILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS- 297 (382)
T ss_dssp SSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET-
T ss_pred eecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC-
Confidence 111 11245677777777777887655 357788889999999999999884 787764321 1334555553
Q ss_pred CCCCHHHHHHHHhhcCeEEccCCC--CCCC--------CC----CCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 332 MGIDGARVEKILDMASITLNKNSV--PGDK--------SA----LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 332 ~~~~~~~~~~~L~~~gI~v~~~~~--p~~~--------~~----~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+.+..++.+.|.++||.++.+.. +... .+ ...+.+|++++..++ ++|++++++.|+++++.
T Consensus 298 -~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 298 -YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNT----DEDVDRLLEVLPGVIER 372 (382)
T ss_dssp -TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred -CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence 45678898999899999875421 1100 00 014689999887777 99999999999998876
Q ss_pred HH
Q 013217 398 TL 399 (447)
Q Consensus 398 ~~ 399 (447)
..
T Consensus 373 ~~ 374 (382)
T 4eb5_A 373 LR 374 (382)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 31
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.96 E-value=1.1e-27 Score=235.01 Aligned_cols=337 Identities=19% Similarity=0.190 Sum_probs=229.3
Q ss_pred CCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--
Q 013217 30 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-- 107 (447)
Q Consensus 30 n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~-- 107 (447)
...|+.|++++...+.+.| +.|...+..+... .......++++++++|++++.+ +.+++|++|+..++.++.
T Consensus 11 ~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~v---~~~~g~t~a~~~~~~~~~~~ 84 (384)
T 1eg5_A 11 TRVDDRVLEEMIVFYREKY--GNPNSAHGMGIEA-NLHMEKAREKVAKVLGVSPSEI---FFTSCATESINWILKTVAET 84 (384)
T ss_dssp CCCCHHHHHHHHHHHHTCC--CCTTCSSHHHHHH-HHHHHHHHHHHHHHHTSCGGGE---EEESCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcC--CCCccccHHHHHH-HHHHHHHHHHHHHHcCCCCCeE---EEECCHHHHHHHHHHhhhhh
Confidence 3679999999999887644 2333222111111 2222345678999999886532 233555699999999987
Q ss_pred --CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--C
Q 013217 108 --KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--D 183 (447)
Q Consensus 108 --~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~ 183 (447)
+|||+|++.++.|.++.... ..+...|. +++.++++ .++.+|+++|++++++ +|++|+++.++||+ .
T Consensus 85 ~~~~gd~vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~ 155 (384)
T 1eg5_A 85 FEKRKRTIITTPIEHKAVLETM-----KYLSMKGF--KVKYVPVD-SRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTI 155 (384)
T ss_dssp TTTTCCEEEECTTSCHHHHHHH-----HHHHHTTC--EEEECCBC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBB
T ss_pred ccCCCCEEEECCCCchHHHHHH-----HHHHhcCC--EEEEEccC-CCCccCHHHHHHHhCC-CCeEEEEECCCCCcccc
Confidence 89999999998887653211 01123343 56666666 4578999999999987 89999998777774 7
Q ss_pred CChHHHHHHHHHhC--CEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH--HHHh
Q 013217 184 FDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL--ESAI 258 (447)
Q Consensus 184 ~~~~~i~~ia~~~g--~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~--~~~i 258 (447)
.|+++|.++|+++| +++|+|++|+.|....++.. . ++|++++|+||+ .||.| |+++++++ + ...+
T Consensus 156 ~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~--~-~~di~~~s~sK~-~g~~G~G~~~~~~~------~~~~~~~ 225 (384)
T 1eg5_A 156 QPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEK--L-EVDYASFSAHKF-HGPKGVGITYIRKG------VPIRPLI 225 (384)
T ss_dssp CCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTT--T-CCSEEEEEGGGG-TSCTTCEEEEECTT------SCCCCSB
T ss_pred cCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchh--c-CCCEEEecHHHh-cCCCceEEEEEcCC------Ccccccc
Confidence 89999999999999 99999999876543222111 1 479999999997 56776 99999873 3 1111
Q ss_pred hhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC--CCeeEEecCCCCCC
Q 013217 259 NNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS--DNHLVLVDLRPMGI 334 (447)
Q Consensus 259 ~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~~~~~~v~~~~~~~ 334 (447)
.... .....++++...++++..+++... .++++..+++.++++++.+.|.+.|+++..+.. .....++.+. +.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~--~~ 302 (384)
T 1eg5_A 226 HGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFP--NI 302 (384)
T ss_dssp CSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECT--TC
T ss_pred ccCcccccccCCCCChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeC--CC
Confidence 1100 011245677777777777887643 356788899999999999999888888765321 1223444443 34
Q ss_pred CHHHHHHHHhhcCeEEccCCCCCCCC----------CC----CCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 335 DGARVEKILDMASITLNKNSVPGDKS----------AL----VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 335 ~~~~~~~~L~~~gI~v~~~~~p~~~~----------~~----~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+..++.+.|.++||.+..+...+... .. ..+.+|++++..++ ++|++++++.|+++++..
T Consensus 303 ~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 303 RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNT----EEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCC----HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence 67888899999999997532111000 00 13579999887677 999999999999988754
No 32
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=1.2e-27 Score=238.31 Aligned_cols=352 Identities=14% Similarity=0.159 Sum_probs=237.1
Q ss_pred HHHHhhcCeeEe-cCCCCCCHHHHHHHhhhhh--ccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceee
Q 013217 15 EKERQFKSLELI-ASENFTSRAVMEAVGSCLT--NKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV 90 (447)
Q Consensus 15 e~~~~~~~i~l~-~~~n~~~~~v~~a~~~~~~--~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v 90 (447)
|+...+..+-|. ++...+++.|++++.+.+. +.| ++|.. .+..+ .......+.+++++++++|++++.+ +
T Consensus 16 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~~~v---~ 89 (423)
T 3lvm_A 16 VYRAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFG-WQAEEAVDIARNQIADLVGADPREI---V 89 (423)
T ss_dssp ----CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHH-HHHHHHHHHHHHHHHHHHTCCGGGE---E
T ss_pred cccccCCCEeecCCCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchh-HHHHHHHHHHHHHHHHHcCCCCCeE---E
Confidence 334445566655 4444679999999998887 544 44543 22222 2223344456789999999986532 2
Q ss_pred ecCCcHHHHHHHHHHhcC----CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhh
Q 013217 91 QPLSGSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI 166 (447)
Q Consensus 91 ~~~sGs~a~~~~~~al~~----pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~ 166 (447)
.+++|++|+.+++.++.+ |||+|++..+.|+++..... .+...|. +++.++++ .++.+|+++|+++++
T Consensus 90 ~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~ 161 (423)
T 3lvm_A 90 FTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-----QLEREGF--EVTYLAPQ-RNGIIDLKELEAAMR 161 (423)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHH-----HHHHTTC--EEEEECCC-TTSCCCHHHHHHHCC
T ss_pred EeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHH-----HHHHcCC--EEEEeccC-CCCccCHHHHHHhcC
Confidence 235556999999988873 89999999998877532110 1122243 55566666 367899999999998
Q ss_pred hhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEE
Q 013217 167 LFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIF 243 (447)
Q Consensus 167 ~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~ 243 (447)
+ ++++|+++.++|++ ..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||++ |+.| |+++
T Consensus 162 ~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~-g~~g~G~~~ 236 (423)
T 3lvm_A 162 D-DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL---KVDLMSFSGHKIY-GPKGIGALY 236 (423)
T ss_dssp T-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTS---CCSEEEEESTTTT-SCSSCEEEE
T ss_pred C-CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhc---CCCEEEechHHhc-CCCCeEEEE
Confidence 7 89999988777664 789999999999999999999998776543222111 4799999999965 5655 9999
Q ss_pred eecCCcchhhHHHHhhhccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEee
Q 013217 244 FKKDPVLGVELESAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLV 316 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 316 (447)
++++ ..+.+..... ....++++...++++.++++.+.. .+++..+++.++++.+.+.|.+. |+++.
T Consensus 237 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 309 (423)
T 3lvm_A 237 VRRK------PRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE-EMATEMERLRGLRNRLWNGIKDIEEVYLN 309 (423)
T ss_dssp ECBT------TBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred Eecc------ccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 9873 3333333221 122466777888888778876543 36778889999999999999885 88877
Q ss_pred eCCCC--CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCC--CCCCC--------CC----CCCeEEEecCccccCCCC
Q 013217 317 SGGSD--NHLVLVDLRPMGIDGARVEKILDMASITLNKNSV--PGDKS--------AL----VPGGIRIGSPAMTTRGFS 380 (447)
Q Consensus 317 ~~~~~--~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~--p~~~~--------~~----~~~~iRig~~~~~~~g~~ 380 (447)
.+... ..++.+.+ .+.+..++.+.|.+ |.++.+.. ++... .. ..+.+|++++..++
T Consensus 310 ~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t---- 381 (423)
T 3lvm_A 310 GDLEHGAPNILNVSF--NYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT---- 381 (423)
T ss_dssp SCSTTBCTTEEEEEE--TTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCC----
T ss_pred CCccccCCCeEEEEe--CCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCC----
Confidence 54211 22333443 34577888888877 77755321 11000 00 13689999887766
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013217 381 EKEFVAIADFIHEGVEITLE 400 (447)
Q Consensus 381 ~~di~~l~~~i~~~l~~~~~ 400 (447)
++|++++++.|+++++....
T Consensus 382 ~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 382 EEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999986643
No 33
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.96 E-value=1.1e-27 Score=239.02 Aligned_cols=334 Identities=17% Similarity=0.155 Sum_probs=235.3
Q ss_pred eeEecCCC---CCCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217 23 LELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 98 (447)
Q Consensus 23 i~l~~~~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a 98 (447)
|++..+.+ ..++.+++++.+.+.. |..++++.++..| .+...+++ +++++++|.+. .+.++||++|
T Consensus 67 id~~~~~~lg~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~G~~~~~~~l~----~~la~~~g~~~-----~i~~~sGs~a 136 (427)
T 2w8t_A 67 ILLGTYNYMGMTFDPDVIAAGKEALEK-FGSGTCGSRMLNGTFHDHMEVE----QALRDFYGTTG-----AIVFSTGYMA 136 (427)
T ss_dssp EECSCCCTTCGGGCHHHHHHHHHHHHH-HCSCCCSCTTTTCCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHH
T ss_pred EEEECcccccCCCCHHHHHHHHHHHHH-hCCCCcccccccCCcHHHHHHH----HHHHHHhCCCc-----eEEecCcHHH
Confidence 45544432 2578999999887764 3445665554444 34444554 67888899863 3556999999
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEEEE
Q 013217 99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA 175 (447)
Q Consensus 99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~~klii~ 175 (447)
+..++.+++++||+|++..+.|+++.. .+...|. +++.++ .+|+++|++++++. ++++|++
T Consensus 137 ~~~al~~l~~~gd~vl~~~~~h~~~~~--------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~~~~v~~ 200 (427)
T 2w8t_A 137 NLGIISTLAGKGEYVILDADSHASIYD--------GCQQGNA--EIVRFR------HNSVEDLDKRLGRLPKEPAKLVVL 200 (427)
T ss_dssp HHHHHHHHSCTTCEEEEETTCCHHHHH--------HHHHSCS--EEEEEC------TTCHHHHHHHHHTSCSSSCEEEEE
T ss_pred HHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCC--eeEEeC------CCCHHHHHHHHHhccCCCCeEEEE
Confidence 999999999999999999988876532 2334454 444543 26999999999764 6889998
Q ss_pred cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc-cc--CC-CCC-CcccEEEeCCCcccCCCCCceEEeecCC
Q 013217 176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--VA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDP 248 (447)
Q Consensus 176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~~--~~-~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~ 248 (447)
+++++++ ..++++|.++|+++|+++|+|++|+.|.... +. .. ..+ +.+|++++|+||+++ ++||++++++
T Consensus 201 ~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~gG~v~~~~-- 277 (427)
T 2w8t_A 201 EGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TVGGFVVSNH-- 277 (427)
T ss_dssp ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SCCEEEEECC--
T ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cCCCEEEeCH--
Confidence 8766654 7799999999999999999999997765531 10 00 111 247999999999984 7789999987
Q ss_pred cchhhHHHHhhhccCC-CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217 249 VLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 327 (447)
Q Consensus 249 ~~~~~~~~~i~~~~~~-~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v 327 (447)
++.+.+.....+ ...++++...++++..+++.+.. .++..+++.++++++.+.|++.|+++..+.....++++
T Consensus 278 ----~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 351 (427)
T 2w8t_A 278 ----PKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMT--AHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAV 351 (427)
T ss_dssp ----TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEEE
T ss_pred ----HHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEEE
Confidence 555555432111 11345666677776677877642 46678889999999999998888887633213456677
Q ss_pred cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
.+.. ..+..++.+.|.++||.+..+..|+. +...+.+|++++..++ ++|++++++.|+++++..
T Consensus 352 ~~~~-~~~~~~l~~~L~~~Gi~v~~~~~~~~--~~~~~~lRi~~~~~~t----~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 352 MLED-QEQAAMMWQALLDGGLYVNMARPPAT--PAGTFLLRCSICAEHT----PAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp EESS-HHHHHHHHHHHHHTTEECEEECTTTS--CTTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred EECC-HHHHHHHHHHHHHCCeEEeeeCCCCC--CCCCeEEEEEeCCCCC----HHHHHHHHHHHHHHHHHh
Confidence 6642 22356788888888999876543322 1124589999987777 999999999999988654
No 34
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.96 E-value=6.4e-28 Score=234.84 Aligned_cols=330 Identities=9% Similarity=0.023 Sum_probs=230.5
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
+.+++.++...+|+.+++++...+.+.. .++.. .+..+. .+.+.+++++++++|.+..+. .+.+++|++|+.
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~-~~~~~----~~~~~~-~~~~~~~~~la~~~g~~~~~~--v~~~~g~t~al~ 75 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKI-GVISH----RSKKFE-EVYKTASDNLKTLLELPSNYE--VLFLASATEIWE 75 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTT-TTSCT----TSHHHH-HHHHHHHHHHHHHTTCCTTEE--EEEESCHHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCc-cCcCC----CCHHHH-HHHHHHHHHHHHHhCCCCCcE--EEEeCCchHHHH
Confidence 4688899999999999988877765532 11111 122222 333456789999999863322 233456669999
Q ss_pred HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217 101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180 (447)
Q Consensus 101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~ 180 (447)
+++.++++| .+++..+.+.++. +. ..+...|. +++.++.+ .++.+|+++++ +++ +|++|++++++|
T Consensus 76 ~~~~~l~~~--~~i~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~--~~~-~~~~v~~~~~~n 141 (362)
T 3ffr_A 76 RIIQNCVEK--KSFHCVNGSFSKR---FY---EFAGELGR--EAYKEEAA-FGKGFYPADIT--VPA-DAEIICLTHNET 141 (362)
T ss_dssp HHHHHHCSS--EEEEEECSHHHHH---HH---HHHHHTTC--EEEEEECC-TTCCCCGGGCC--CCT-TCCEEEEESEET
T ss_pred HHHHhccCC--cEEEEcCcHHHHH---HH---HHHHHhCC--CeEEEecC-CCCCCCHHHHh--ccC-CccEEEEEcCCC
Confidence 999999988 5444444333221 00 11223344 44454454 45789999998 555 899999987777
Q ss_pred CC--CCChHHHHHHHHHh-CCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHH
Q 013217 181 PR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 256 (447)
Q Consensus 181 ~~--~~~~~~i~~ia~~~-g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~ 256 (447)
|+ ..|+++|.++|+++ |+++++|++|+.|.... ++..+|++++|+||+++||.| |++++++ ++.+
T Consensus 142 ptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~-----~~~~~d~~~~s~~K~~~~~~G~g~~~~~~------~~~~ 210 (362)
T 3ffr_A 142 SSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKF-----DWTKIDSVFFSVQKCFGLPAGLGVWILND------RVIE 210 (362)
T ss_dssp TTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCC-----CTTSCSEEEEETTSTTCCCSCCEEEEEEH------HHHH
T ss_pred CcceeCCHHHHHHHHHhCCCCEEEEecccccCCccc-----ChhHCcEEEEecccccCCCCceEEEEECH------HHHH
Confidence 65 78999999999999 99999999987664322 222379999999999987777 8888887 5555
Q ss_pred HhhhccC--------------------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217 257 AINNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL 315 (447)
Q Consensus 257 ~i~~~~~--------------------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 315 (447)
++..... ....++++...++++..+++.+...++++..+++.++++++.+.|.+. |+++
T Consensus 211 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 290 (362)
T 3ffr_A 211 KSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSF 290 (362)
T ss_dssp HHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred HhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCcee
Confidence 5443211 112467788878788788886655567888999999999999999986 8887
Q ss_pred eeCC---CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217 316 VSGG---SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH 392 (447)
Q Consensus 316 ~~~~---~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~ 392 (447)
..+. .....+++.+.. +..++.+.|.++||.++.+..+ ...+.+|++++..++ ++|+++++++|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~~-----~~~~~iRis~~~~~~----~e~i~~l~~~l~ 358 (362)
T 3ffr_A 291 GVEDAKLRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYGS-----KKETQIRIANFPAHS----LEQVHKLVQTLK 358 (362)
T ss_dssp SSSCGGGBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSGG-----GTTTEEEEECCTTSC----HHHHHHHHHHHH
T ss_pred ccCChhhcCCceEEEecCC---CHHHHHHHHHHCCeEEecCccc-----cCCCEEEEECCCCCC----HHHHHHHHHHHH
Confidence 7521 123445566543 6788999998889999754222 224689999988777 999999999998
Q ss_pred HHH
Q 013217 393 EGV 395 (447)
Q Consensus 393 ~~l 395 (447)
+++
T Consensus 359 ~~~ 361 (362)
T 3ffr_A 359 EKI 361 (362)
T ss_dssp HHT
T ss_pred HHh
Confidence 753
No 35
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=2.7e-28 Score=240.08 Aligned_cols=337 Identities=15% Similarity=0.100 Sum_probs=232.7
Q ss_pred cCeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217 21 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 98 (447)
Q Consensus 21 ~~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a 98 (447)
+.+.|..+.. +.|+.|++++.+.+.+.. ...+.. +.|.. .. ......++.+++++|++++.+ +.+++|++|
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~y~~--~~-~~~~~l~~~la~~~g~~~~~v---~~~~g~t~a 88 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQ-ENGPFSIAANQH--IQ-QLIAQLRQALAETFNVDPNTI---TITDNVTTG 88 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHH-HHCSSSHHHHHH--HH-HHHHHHHHHHHHHTTSCGGGE---EEESSHHHH
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHh-ccCCcchhhHHH--HH-HHHHHHHHHHHHHcCCCHHHE---EEeCChHHH
Confidence 3455544433 457889999988776521 111111 01111 11 222345678999999876532 334566699
Q ss_pred HHHHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217 99 NFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAG 176 (447)
Q Consensus 99 ~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii~~ 176 (447)
+..++.++ ++|||+|++.++.|.++..... ..+...|. +++.+++++ +++.+|+++|++.+++ ++++|+++
T Consensus 89 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 161 (390)
T 1elu_A 89 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQ----AIAARFGI--TYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILS 161 (390)
T ss_dssp HHHHHHHSCCCTTCEEEEETTCCHHHHHHHH----HHHHHHCC--EEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEE
T ss_pred HHHHHhCCCCCCCCEEEEecCcccHHHHHHH----HHHHHhCc--EEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEe
Confidence 99999999 8999999999998877532100 00122344 445555542 4578999999999876 89999998
Q ss_pred CCCCCC--CCChHHHHHHHH----HhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCc
Q 013217 177 ASAYPR--DFDYPRMRQIAD----AVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV 249 (447)
Q Consensus 177 ~~~~~~--~~~~~~i~~ia~----~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~ 249 (447)
+++||+ ..|+++|.++|+ ++|+++++|++|+.|....+... .+.|++++|+||++.|+.| |++++++
T Consensus 162 ~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~---~~~d~~~~s~~K~~~~~~g~G~~~~~~--- 235 (390)
T 1elu_A 162 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSR---LEVDYYAFTGHKWFAGPAGVGGLYIHG--- 235 (390)
T ss_dssp SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTT---SCCSEEEEESSSTTCCCTTCEEEEECT---
T ss_pred ccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhh---cCCCEEEccccccccCCCceEEEEECH---
Confidence 777764 789999999999 99999999999987654322211 1479999999998877777 9999987
Q ss_pred chhhHHHHhhhccC---------------------CCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHH
Q 013217 250 LGVELESAINNAVF---------------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASR 307 (447)
Q Consensus 250 ~~~~~~~~i~~~~~---------------------~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~ 307 (447)
++.+.+..... ....++++...++++..+++.+...+ +++..+++.++++++.+.
T Consensus 236 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~ 312 (390)
T 1elu_A 236 ---DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG 312 (390)
T ss_dssp ---TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred ---HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45555443211 01235677777777777787665444 678889999999999999
Q ss_pred HHHC-CcEeeeC-CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217 308 LVEL-GYKLVSG-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV 385 (447)
Q Consensus 308 L~~~-g~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~ 385 (447)
|.+. |++++.+ .....++++++. .+.+..++.+.|.++||.+..+. .++.+|++++..++ ++|++
T Consensus 313 L~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~--------~~~~iRis~~~~~~----~~~i~ 379 (390)
T 1elu_A 313 LNQLPHVHCLATSAPQAGLVSFTVD-SPLGHRAIVQKLEEQRIYLRTIA--------DPDCIRACCHYITD----EEEIN 379 (390)
T ss_dssp HHHSTTEEESCSSCCSSSEEEEEEC-SSSCHHHHHHHHHHTTEECEEET--------TTTEEEEECCTTCC----HHHHH
T ss_pred HHhcCCcEEecCccccccEEEEEcC-CCCCHHHHHHHHHHCCEEEEecC--------CCCeEEEecccCCC----HHHHH
Confidence 9985 8887753 123445556664 34567888898989999986532 24589999877777 99999
Q ss_pred HHHHHHHH
Q 013217 386 AIADFIHE 393 (447)
Q Consensus 386 ~l~~~i~~ 393 (447)
++++.|++
T Consensus 380 ~~~~~l~~ 387 (390)
T 1elu_A 380 HLLARLAD 387 (390)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988864
No 36
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.96 E-value=9.4e-28 Score=235.79 Aligned_cols=335 Identities=15% Similarity=0.082 Sum_probs=227.8
Q ss_pred hcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC----CCccceeeecCCc
Q 013217 20 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD----ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~----~~~~~~~v~~~sG 95 (447)
.+.+.+.++...+++.|++++...+.+. ++| .... .....+++++++++.. +++ .+.+++|
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~~---~~~--------~~~~-~~~~~~~~l~~~~~~~~~~~~~~---v~~~~g~ 68 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSLGH---TSP--------EFVS-IFQRVLKNTRAVFKSAAASKSQP---FVLAGSG 68 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCCT---TSH--------HHHH-HHHHHHHHHHHHTTCCGGGTCEE---EEEESCT
T ss_pred ccceeecCCCcCchHHHHHHHhcccccc---CCH--------HHHH-HHHHHHHHHHHHhCCCCCCCCce---EEEcCch
Confidence 4557888999999999999987654321 111 1111 2223456777777764 332 2334566
Q ss_pred HHHHHHHHHHhc---CCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCCCCCCHHHHHHHhhhhCCc
Q 013217 96 SPANFEVYTAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPK 171 (447)
Q Consensus 96 s~a~~~~~~al~---~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~~~~~~~k 171 (447)
++|+..++.++. +|||+|++++..+.+.. . ...+...|. +++.+++ + .++.+|+++|++++++.+|+
T Consensus 69 t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~----~--~~~~~~~g~--~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~ 139 (385)
T 2bkw_A 69 TLGWDIFASNFILSKAPNKNVLVVSTGTFSDR----F--ADCLRSYGA--QVDVVRPLK-IGESVPLELITEKLSQNSYG 139 (385)
T ss_dssp THHHHHHHHHHSCTTCSCCEEEEECSSHHHHH----H--HHHHHHTTC--EEEEECCSS-TTSCCCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHhccCCCCCeEEEEcCCcchHH----H--HHHHHHcCC--ceEEEecCC-CCCCCCHHHHHHHHhcCCCC
Confidence 799999999997 89999988754321110 0 012233454 5555556 4 46789999999999765799
Q ss_pred EEEEcCCCCCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeec
Q 013217 172 LIIAGASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKK 246 (447)
Q Consensus 172 lii~~~~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~ 246 (447)
+|++++++|++ ..|+++|.++|+++ |+++++|++|+.|....++... ++|++++|+||++.||.| |++++++
T Consensus 140 ~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~G~G~~~~~~ 216 (385)
T 2bkw_A 140 AVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLCSS 216 (385)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEECH
T ss_pred EEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccccccc---CceEEEecCccccccCCcceEEEEcH
Confidence 99998777664 78999999999999 9999999999766543221111 479999999999998888 9999987
Q ss_pred CCcchhhHHH-Hhhh----------------------ccC--CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Q 013217 247 DPVLGVELES-AINN----------------------AVF--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC 301 (447)
Q Consensus 247 ~~~~~~~~~~-~i~~----------------------~~~--~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~ 301 (447)
++.+ ++.. ... ....++++...++++..+++.+...++++..+++.+++
T Consensus 217 ------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 290 (385)
T 2bkw_A 217 ------RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMS 290 (385)
T ss_dssp ------HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ------HHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444 3310 000 11135677777778877888765445777888999999
Q ss_pred HHHHHHH-HHCCcEeeeCC----CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEe-cCccc
Q 013217 302 RALASRL-VELGYKLVSGG----SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIG-SPAMT 375 (447)
Q Consensus 302 ~~l~~~L-~~~g~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig-~~~~~ 375 (447)
+++.+.| ++.|+++..+. ...+++++.+.. ..++.+.|.++||.++.+.. .....+.+|++ ++. +
T Consensus 291 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~~----~~~~~~~iRis~~~~-~ 361 (385)
T 2bkw_A 291 DWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGGIH----KDIGPKYIRIGHMGV-T 361 (385)
T ss_dssp HHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTEECBCCCC----TTTGGGEEEECCCGG-G
T ss_pred HHHHHHHHHhcCceecccCcccccCCceEEEecCC----HHHHHHHHHHCCeEEeCCCC----cccCCCEEEEEcccc-c
Confidence 9999999 87788876421 134566776642 67788888889999965321 11234689999 442 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 013217 376 TRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 376 ~~g~~~~di~~l~~~i~~~l~ 396 (447)
.+.++++|++++++.|+++++
T Consensus 362 ~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 362 ACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp TSSTTCTHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 111238999999999988764
No 37
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.96 E-value=4.9e-28 Score=238.41 Aligned_cols=337 Identities=15% Similarity=0.129 Sum_probs=233.2
Q ss_pred cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCCc-
Q 013217 21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG- 95 (447)
Q Consensus 21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sG- 95 (447)
..|+|..+++. .++.|++++.+.+.+. ..+|+.. ..++++.+++++++.+| ++++. |.+++|
T Consensus 28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~~----i~~~~g~ 94 (391)
T 3dzz_A 28 KELPMWIAEMDFKIAPEIMASMEEKLKVA-AFGYESV--------PAEYYKAVADWEEIEHRARPKEDW----CVFASGV 94 (391)
T ss_dssp TCEECCSSCCSSCCCHHHHHHHHHHHTTC-CCCCBCC--------CHHHHHHHHHHHHHHHSCCCCGGG----EEEESCH
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhcC-cCCCCCC--------CHHHHHHHHHHHHHHhCCCCCHHH----EEECCCH
Confidence 56788777653 5799999998877652 1233221 24566666788999988 44443 333555
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC--CCCCCCCHHHHHHHhhhhCCcEE
Q 013217 96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKLI 173 (447)
Q Consensus 96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~id~~~l~~~~~~~~~kli 173 (447)
++|+.+++.++++|||+|++..+.|.++.. .+...|. +++.++++ ..++.+|+++|++++++.++++|
T Consensus 95 ~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v 164 (391)
T 3dzz_A 95 VPAISAMVRQFTSPGDQILVQEPVYNMFYS--------VIEGNGR--RVISSDLIYENSKYSVNWADLEEKLATPSVRMM 164 (391)
T ss_dssp HHHHHHHHHHHSCTTCEEEECSSCCHHHHH--------HHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHhCCCCCeEEECCCCcHHHHH--------HHHHcCC--EEEEeeeeecCCceeecHHHHHHHHhccCceEE
Confidence 599999999999999999999998876532 2334454 55555553 23345999999999984489999
Q ss_pred EEcCCCCCC--C---CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-----ccc--EEEeCCCccc--CCCCC
Q 013217 174 IAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD--VVTTTTHKSL--RGPRG 239 (447)
Q Consensus 174 i~~~~~~~~--~---~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-----~~D--i~~~s~~K~l--~Gp~g 239 (447)
+++.++||+ . .++++|.++|+++|+++|+|++|+. +...+....++. ..| ++++|+||++ +|.|.
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~ 243 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGD-LVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA 243 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEeccccc-ccCCCCCceehhhcCccccCcEEEEEeChhhccccchhh
Confidence 888777775 4 3688999999999999999999853 333332122221 146 8999999996 56778
Q ss_pred ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeee
Q 013217 240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS 317 (447)
Q Consensus 240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~ 317 (447)
|+++++++ ++.+.+..........+++....++...+++.. ....++..+++.++++.+.+.|.+. |+++..
T Consensus 244 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 317 (391)
T 3dzz_A 244 ACAIIPNP-----DLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG-HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD 317 (391)
T ss_dssp EEEECCSH-----HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred eEEEECCH-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence 99999742 677766543211112234445555555566652 2335777888899999999999884 888765
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 318 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 318 ~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+ ..+.+.|+++...+.+..++.+.| +++||.+..+...+. ..++.+|++++ ++ +++++++++.|.++++
T Consensus 318 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRis~~--~~----~~~i~~~l~~l~~~l~ 387 (391)
T 3dzz_A 318 S-NASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRG---NGHEFVRINLA--CP----KELVIDGMQRLKQGVL 387 (391)
T ss_dssp C-CBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCT---TGGGEEEEECC--SC----HHHHHHHHHHHHHHHH
T ss_pred c-CceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEEec--CC----HHHHHHHHHHHHHHHH
Confidence 4 345566778765456788888888 589999975432211 12468999976 44 8999999999998876
Q ss_pred H
Q 013217 397 I 397 (447)
Q Consensus 397 ~ 397 (447)
.
T Consensus 388 ~ 388 (391)
T 3dzz_A 388 N 388 (391)
T ss_dssp T
T ss_pred H
Confidence 4
No 38
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.96 E-value=1.3e-27 Score=236.33 Aligned_cols=333 Identities=18% Similarity=0.199 Sum_probs=233.4
Q ss_pred CeeEecCCCC---CCHHHHHHHhhhhhccCCCCCCCCcccCc-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217 22 SLELIASENF---TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 97 (447)
Q Consensus 22 ~i~l~~~~n~---~~~~v~~a~~~~~~~~~~~g~~~~~~~~g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~ 97 (447)
.|++..+... .++.+.+++.+.+.. |..++.+.+|..| .+...++ ++.+++++|++ + .+.++||++
T Consensus 47 ~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~-~----~i~~~sGs~ 116 (401)
T 1fc4_A 47 VINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMASVRFICGTQDSHKEL----EQKLAAFLGME-D----AILYSSCFD 116 (401)
T ss_dssp EEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHHHHH----HHHHHHHHTCS-E----EEEESCHHH
T ss_pred EEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCCCcccCCcHHHHHH----HHHHHHHhCCC-c----EEEeCChHH
Confidence 3555555222 379999999887754 4444444443222 2333444 46888899987 3 345699999
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcE
Q 013217 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKL 172 (447)
Q Consensus 98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~kl 172 (447)
++..++.++++|||+|++.++.|++++. .+...|. +++.++ .+|++++++++++. ++++
T Consensus 117 a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 117 ANGGLFETLLGAEDAIISDALNHASIID--------GVRLCKA--KRYRYA------NNDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHTSCS--EEEEEC------TTCHHHHHHHHHHHHHTTCSSEE
T ss_pred HHHHHHHHHcCCCCEEEEcchhHHHHHH--------HHHHcCC--ceEEEC------CCCHHHHHHHHHHhhccCCCceE
Confidence 9999999999999999999988866531 2334454 444543 25899999988753 6899
Q ss_pred EEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccc-cccC-C--CCC-CcccEEEeCCCcccCCCCCceEEee
Q 013217 173 IIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-A--DPF-KYCDVVTTTTHKSLRGPRGGMIFFK 245 (447)
Q Consensus 173 ii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~-~~~~-~--~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~ 245 (447)
|++++++||+ ..++++|.++|+++|+++|+|++|+.|+.. .+.. + ..+ ++.|++++|+||+++|+.||+++++
T Consensus 181 v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~ 260 (401)
T 1fc4_A 181 IATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAAR 260 (401)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEEC
T ss_pred EEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcC
Confidence 9998777765 778999999999999999999998767653 2210 0 111 2479999999999966668999998
Q ss_pred cCCcchhhHHHHhhhccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217 246 KDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL 324 (447)
Q Consensus 246 ~~~~~~~~~~~~i~~~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 324 (447)
+ ++.+.+.....+. ..++++....+++..+++.... .++..+++.++++++.+.|++.|+++.. ...++
T Consensus 261 ~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~ 330 (401)
T 1fc4_A 261 K------EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAG--ADHAI 330 (401)
T ss_dssp H------HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCC--SSSSE
T ss_pred H------HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccC--CCCCE
Confidence 7 6777665432111 1335566666666667776542 3567888999999999999988887763 34566
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+++++.. +.+..++.+.|.++||.+..+..++. +...+.+|++++..++ ++|++++++.|+++++.
T Consensus 331 ~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 331 IPVMLGD-AVVAQKFARELQKEGIYVTGFFYPVV--PKGQARIRTQMSAAHT----PEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp EEEEEEC-HHHHHHHHHHHHHTTEECCEECTTSS--CTTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred EEEEcCC-hHHHHHHHHHHHHCCcEEeeecCCCC--CCCCceEEEEeCCCCC----HHHHHHHHHHHHHHHHH
Confidence 7777642 23456788888888999976433321 1123579999887777 99999999999988764
No 39
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.96 E-value=6.3e-27 Score=227.48 Aligned_cols=320 Identities=12% Similarity=0.062 Sum_probs=230.7
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-H
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S 96 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s 96 (447)
+..|+|..++|. .++.+++++...+.+ ..+||. ....++ ++++++++|+++++ |.+++| +
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~-------~~~~~l----~~~la~~~~~~~~~----i~~~~g~~ 78 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAVVK--ANRYAK-------NEILML----GNKLAAHHQVEAPS----ILLTAGSS 78 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTGGG--TTSCCH-------HHHHHH----HHHHHHHTTSCGGG----EEEESHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHhh--CcCCCC-------CchHHH----HHHHHHHhCCChHH----EEEeCChH
Confidence 356888888885 579999999887764 223321 222333 47889999987653 333555 4
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh-hCCcEEEE
Q 013217 97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIA 175 (447)
Q Consensus 97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~-~~~klii~ 175 (447)
+|+..++.++++|||+|++..+.|.++.. .+...|. +++.++++ .++.+|++++++++++ .++++|++
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~v~l 147 (354)
T 3ly1_A 79 EGIRAAIEAYASLEAQLVIPELTYGDGEH--------FAKIAGM--KVTKVKML-DNWAFDIEGLKAAVAAYSGPSIVYL 147 (354)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECCC-TTSCCCHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEECCCCchHHHH--------HHHHcCC--EEEEecCC-CCCCCCHHHHHHHhccCCCCCEEEE
Confidence 99999999999999999999988876531 2334454 55666666 3588999999999983 38999999
Q ss_pred cCCCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC------cccEEEeCCCccc--CCCCCceEE
Q 013217 176 GASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL--RGPRGGMIF 243 (447)
Q Consensus 176 ~~~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~------~~Di~~~s~~K~l--~Gp~gG~i~ 243 (447)
+.++||+ ..+.+++.++++. +|+++++|++|. ++...+.....+. ..+++++|+||++ +|.|.|+++
T Consensus 148 ~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 226 (354)
T 3ly1_A 148 VNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYA-EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAV 226 (354)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTG-GGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEE
T ss_pred eCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHH-HhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeee
Confidence 8778775 7788888888887 999999999985 3333322112111 2458899999997 466779999
Q ss_pred eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH 323 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 323 (447)
+++ ++.+.+.....+ ++++....+++..+++.. ..+++..+++.++++.+.+.|.+.|+++..+ ...
T Consensus 227 ~~~------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~ 293 (354)
T 3ly1_A 227 AHP------TVIALMGRYVAG---EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLPS--EGN 293 (354)
T ss_dssp CCH------HHHHHHGGGTTC---SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--CSS
T ss_pred cCH------HHHHHHHHhcCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECCC--Cce
Confidence 977 788877765443 355666665555555532 3457788889999999999998888877643 344
Q ss_pred eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
++++++.. +..++.+.|.++||.++ +..++ .++.+|+++. + ++|++++++.|+++++.
T Consensus 294 ~~~~~~~~---~~~~~~~~l~~~gi~v~-g~~~~-----~~~~iRis~~---~----~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 294 FVFHQLVV---PLKDYQTHMADAGVLIG-RAFPP-----ADNWCRISLG---T----PQEMQWVADTMREFRKK 351 (354)
T ss_dssp EEEEECSS---CHHHHHHHHHHTTEECC-CCCTT-----CTTEEEEECC---C----HHHHHHHHHHHHHHHHT
T ss_pred EEEEECCC---CHHHHHHHHHHCCEEEe-ecCCC-----CCCEEEEEcC---C----HHHHHHHHHHHHHHHHh
Confidence 56777753 67888899989999987 43221 3568999964 4 89999999999988763
No 40
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=7e-28 Score=236.72 Aligned_cols=311 Identities=10% Similarity=0.081 Sum_probs=212.7
Q ss_pred CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc
Q 013217 59 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 138 (447)
Q Consensus 59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 138 (447)
.+.++.+.++ .+++++++++|++ + ..+.+.||++|+.+++. +++|||+|+++++.|.++. +. ......
T Consensus 29 ~~~~~~~~~~-~~~~~l~~~~~~~-~---~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~---~~---~~~~~~ 96 (379)
T 3ke3_A 29 MSKAFQEVMN-DLLSNLKTVYNAE-A---AVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYR---WT---QILEKG 96 (379)
T ss_dssp TSHHHHHHHH-HHHHHHHHHHTCS-E---EEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHH---HH---HHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHhCCC-C---EEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHH---HH---HHHHHh
Confidence 3455554444 6678999999987 2 23445688899988765 4579999999987664431 00 011222
Q ss_pred cceeEEEecccCCC-------C-CCCCHHHHHHHhhhhCCcEEEEcCCCCC-C-CCC---hHHHHHHHHHhCCEEEEehh
Q 013217 139 SIYFESMPYRLDES-------T-GLVDYDMLEKTAILFRPKLIIAGASAYP-R-DFD---YPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 139 g~~~~~~~~~~~~~-------~-~~id~~~l~~~~~~~~~klii~~~~~~~-~-~~~---~~~i~~ia~~~g~~livD~a 205 (447)
|..++++.++.+.. . +.+|++++++++++.+|++|++...+++ + ..| +++|.++|+++|+++++|++
T Consensus 97 g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~ 176 (379)
T 3ke3_A 97 KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCI 176 (379)
T ss_dssp CCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 32224444333211 1 2589999999996558999888754443 3 678 99999999999999999999
Q ss_pred hhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccC------------------CC-
Q 013217 206 HISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVF------------------PG- 265 (447)
Q Consensus 206 ~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~------------------~~- 265 (447)
|+ |....+.... ++|++++|+||+|+||.| |++++++ ++.+.+..... .+
T Consensus 177 ~~-g~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (379)
T 3ke3_A 177 AS-GCVWLDMKEL---GIDVLISAPQKGWSSTPCAGLVMLSA------AAIKKVESTESNCFSLDLKQWLTIMRAYENGG 246 (379)
T ss_dssp TC-TTCCCCHHHH---TCSEEEECTTTTTCSCCCEEEEEECH------HHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTS
T ss_pred cc-CCcccccccc---CCCEEEecchhhcCCCCceEEEEECH------HHHHhhhcCCCCceeecHHHHHHHHHhhhccC
Confidence 86 6332211111 589999999999999888 9999987 56555543110 01
Q ss_pred --CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC-CCe-eEEecCCCCCCCHHHHHH
Q 013217 266 --LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS-DNH-LVLVDLRPMGIDGARVEK 341 (447)
Q Consensus 266 --~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~ 341 (447)
+.++++...++++.++++.+...+++++.++..++++++++.|.+.|++++.+.. .+. +..+... + ......+
T Consensus 247 ~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~--~-~~~~~~~ 323 (379)
T 3ke3_A 247 HAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTE--R-DDMHKGS 323 (379)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECS--C-HHHHSSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccC--C-cchHHHH
Confidence 2358888999999999998876678888999999999999999999988765421 122 2222221 1 1112256
Q ss_pred HHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 342 ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 342 ~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
.|.++||.+..+..|....+...+.+|++++.+++ ++|+++++++|+++++..
T Consensus 324 ~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t----~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 324 AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDK----LTDIDGTVERFEKALDEV 376 (379)
T ss_dssp HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHH----HTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCC----HHHHHHHHHHHHHHHHHh
Confidence 78889998865432211112335789999998888 999999999999888754
No 41
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.96 E-value=5.1e-27 Score=231.11 Aligned_cols=348 Identities=14% Similarity=0.116 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHHHhhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--C
Q 013217 6 PEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--L 81 (447)
Q Consensus 6 ~~~~~~~~~e~~~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~ 81 (447)
..+|+...++.. .+..|+|..+++. .++.|.+++...+.+. ..+|+. + ...+++.+++++++.+| +
T Consensus 19 ~~~~d~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~~~~~l~~~l~~~~g~~~ 88 (391)
T 4dq6_A 19 SSKWSEMEKKYG-TNDLLPMWVADMDFKAAPCIIDSLKNRLEQE-IYGYTT-----R---PDSYNESIVNWLYRRHNWKI 88 (391)
T ss_dssp BHHHHCHHHHHS-CSCSEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCBC-----C---CHHHHHHHHHHHHHHHCCCC
T ss_pred ceeeeecccccC-CCCceeccccCCCCCCCHHHHHHHHHHHhCC-CCCCCC-----C---CHHHHHHHHHHHHHHhCCCC
Confidence 345554433211 2566888877774 4799999998877642 122322 1 13555566788999999 5
Q ss_pred CCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC---CCCCCCCH
Q 013217 82 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---ESTGLVDY 158 (447)
Q Consensus 82 ~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~id~ 158 (447)
+++.+ +.+++|++|+..++.++++|||+|++..+.|.++.. .+...|. +++.++++ ..++.+|+
T Consensus 89 ~~~~v---~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~d~ 155 (391)
T 4dq6_A 89 KSEWL---IYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNS--------VVKNNNR--ELIISPLQKLENGNYIMDY 155 (391)
T ss_dssp CGGGE---EEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHH--------HHHHTTC--EEEECCCEECTTSCEECCH
T ss_pred cHHHe---EEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHH--------HHHHcCC--eEEeeeeeecCCCceEeeH
Confidence 55432 223444589999999999999999999988876532 2334454 55555554 23456999
Q ss_pred HHHHHHhhhhCCcEEEEcCCCCCC--C---CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCc-------ccEE
Q 013217 159 DMLEKTAILFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY-------CDVV 226 (447)
Q Consensus 159 ~~l~~~~~~~~~klii~~~~~~~~--~---~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~-------~Di~ 226 (447)
+++++++++ +++|+++.++||+ . .++++|.++|+++|+++|+|++|+. +...+....++.. ..++
T Consensus 156 ~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~ 232 (391)
T 4dq6_A 156 EDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSD-IILKKHKHIPMASISKEFEKNTIT 232 (391)
T ss_dssp HHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHHTEEE
T ss_pred HHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccc-cccCCCCccCHHHcCccccCcEEE
Confidence 999999976 8999888778775 4 3578999999999999999999844 3333322222221 2288
Q ss_pred EeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217 227 TTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304 (447)
Q Consensus 227 ~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l 304 (447)
+.|+||++ +|.|.|+++++++ ++.+.+.........++++....++...+++.. ....++..+++.++++.+
T Consensus 233 ~~s~sK~~g~~G~r~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l 306 (391)
T 4dq6_A 233 CMAPTKTFNIAGLQSSYVVLPDE-----KDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG-ESWLESFLEYLESNIDFA 306 (391)
T ss_dssp EECSHHHHTCGGGCCEEEECCSH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred EEechhhccCcccceEEEEeCCH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHH
Confidence 99999987 5667799998763 566666554333334566776666666677653 233577788889999999
Q ss_pred HHHHHH--CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCH
Q 013217 305 ASRLVE--LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE 381 (447)
Q Consensus 305 ~~~L~~--~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~ 381 (447)
.+.|++ .|+++..+ ..+.+.|+++...+.+..++.+.|.++ ||.+..+...+. ...+.+|++++ ++ +
T Consensus 307 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRis~~--~~----~ 376 (391)
T 4dq6_A 307 IKYINENMPKLKVRKP-EGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGI---GGSGYQRINLA--CP----R 376 (391)
T ss_dssp HHHHHHHCTTSEECCC-SBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCT---TCTTEEEEECC--SC----H
T ss_pred HHHHHhhCCCCEecCC-CccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCC---CCCCeEEEEEc--CC----H
Confidence 999987 38887654 345666788764456788888888776 999975422221 12468999976 44 8
Q ss_pred HHHHHHHHHHHHHH
Q 013217 382 KEFVAIADFIHEGV 395 (447)
Q Consensus 382 ~di~~l~~~i~~~l 395 (447)
++++++++.|++++
T Consensus 377 ~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 377 SMLEEALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
No 42
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.96 E-value=1.4e-26 Score=226.12 Aligned_cols=319 Identities=13% Similarity=0.041 Sum_probs=228.8
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-H
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S 96 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s 96 (447)
+..|+|..++|+ +++.|++++...+.. ..+|+... . .+++ +.+++++|++++++ .+++| +
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~~------~-~~lr----~~la~~~~~~~~~v----~~~~g~~ 92 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANK--AHLYPDDS------M-IELK----STLAQKYKVQNENI----IIGAGSD 92 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGG--TTSCCCTT------C-HHHH----HHHHHHHTCCGGGE----EEESSHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh--hccCCCCC------h-HHHH----HHHHHHhCCCcceE----EECCCHH
Confidence 467899888886 479999999887764 23454431 1 2343 67888899876532 33555 5
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217 97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 176 (447)
Q Consensus 97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~ 176 (447)
+++..++.++++|||+|++..+.|.++.. .+...|. +++.++++.+++ +|++++++++++ +|++|+++
T Consensus 93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~-~d~~~l~~~l~~-~~~~v~~~ 160 (365)
T 3get_A 93 QVIEFAIHSKLNSKNAFLQAGVTFAMYEI--------YAKQCGA--KCYKTQSITHNL-DEFKKLYETHKD-EIKLIFLC 160 (365)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHHHTC--EEEECSSSSCCH-HHHHHHHHHTTT-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEEecCCCCC-CCHHHHHHHhCC-CCCEEEEc
Confidence 89999999999999999999988766531 2334454 555655533567 999999999986 89999998
Q ss_pred CCCCCC--CCChHHHHHHHH--HhCCEEEEehhhhcccc--ccccCCCCCC-----cccEEEeCCCccc--CCCCCceEE
Q 013217 177 ASAYPR--DFDYPRMRQIAD--AVGALLMMDMAHISGLV--AASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF 243 (447)
Q Consensus 177 ~~~~~~--~~~~~~i~~ia~--~~g~~livD~a~~~g~~--~~~~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i~ 243 (447)
.++||+ ..+.+++.++++ ++|+++++|++|..+.. ..+....... ..+++++|+||++ +|.|.|+++
T Consensus 161 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 240 (365)
T 3get_A 161 LPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGI 240 (365)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEE
T ss_pred CCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEE
Confidence 777775 778888888888 67999999999864321 1111111111 2468899999996 567779999
Q ss_pred eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH 323 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 323 (447)
+++ ++.+.+.....+. +++....+++..+++.. .+.++..+++.++++.+.+.|.+.|+++..+ ...
T Consensus 241 ~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~--~~~ 307 (365)
T 3get_A 241 ANA------NIISAFYKLRAPF---NVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKHNIKIIDS--YTN 307 (365)
T ss_dssp ECH------HHHHHHHHHSCTT---CSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC--SSS
T ss_pred cCH------HHHHHHHHhcCCC---CcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC--CCe
Confidence 976 7877776654332 35666666666666532 3457788889999999999999989887643 234
Q ss_pred eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
++++++... +..++.+.|.++||.++.+..++ .+.+|+++. + ++|+++++++|++++
T Consensus 308 ~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~------~~~iRis~~---~----~~~i~~l~~~l~~~l 364 (365)
T 3get_A 308 FITYFFDEK--NSTDLSEKLLKKGIIIRNLKSYG------LNAIRITIG---T----SYENEKFFTEFDKIL 364 (365)
T ss_dssp EEEEECSSS--CHHHHHHHHHTTTEECEECGGGT------CSEEEEECC---C----HHHHHHHHHHHHHHH
T ss_pred EEEEECCCC--CHHHHHHHHHHCCEEEEECccCC------CCEEEEEcC---C----HHHHHHHHHHHHHHh
Confidence 567777543 67889999988999997543222 468999965 4 899999999998765
No 43
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.96 E-value=3.8e-27 Score=231.66 Aligned_cols=331 Identities=13% Similarity=0.110 Sum_probs=229.2
Q ss_pred CeeEecCCC---CCCHHHHHHHhhhhhccCCCCCCCCccc-CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217 22 SLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 97 (447)
Q Consensus 22 ~i~l~~~~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~-~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~ 97 (447)
.|++..+++ ..++.+++++...+.+ +..+++..+|. +..+...++ ++.+++++|++. .+.++||++
T Consensus 41 ~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~~-----~i~~~sGt~ 110 (384)
T 1bs0_A 41 YLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQAL----EEELAEWLGYSR-----ALLFISGFA 110 (384)
T ss_dssp EEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHHH----HHHHHHHHTCSE-----EEEESCHHH
T ss_pred EEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHH----HHHHHHHhCCCc-----EEEeCCcHH
Confidence 467666665 3679999999888754 22334433432 222333444 467888899862 455699999
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEE
Q 013217 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIA 175 (447)
Q Consensus 98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~ 175 (447)
++..++.++++|||+|++.++.|+++.. .+...|. +++.++ .+|++++++++++. ++++|++
T Consensus 111 a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 111 ANQAVIAAMMAKEDRIAADRLSHASLLE--------AASLSPS--QLRRFA------HNDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHTSSS--EEEEEC------TTCHHHHHHHHHSCCSSCEEEEE
T ss_pred HHHHHHHHhCCCCcEEEEcccccHHHHH--------HHHHcCC--CEEEeC------CCCHHHHHHHHHhcCCCCeEEEE
Confidence 9999999999999999999988876532 2334454 444443 25899999998763 2678888
Q ss_pred cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccc-cccC-CCCC-CcccEEEeCCCcccCCCCCceEEeecCCcc
Q 013217 176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVL 250 (447)
Q Consensus 176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~-~~~~-~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~ 250 (447)
++++||+ ..|+++|.++|+++|+++++|++|+.|... .+.. ...+ ...|++++|+||+++ |.||++++++
T Consensus 175 ~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~---- 249 (384)
T 1bs0_A 175 EGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSS---- 249 (384)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECH----
T ss_pred eCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCH----
Confidence 7777775 779999999999999999999999776532 1110 0111 137899999999985 7889999987
Q ss_pred hhhHHHHhhhccCCC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecC
Q 013217 251 GVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL 329 (447)
Q Consensus 251 ~~~~~~~i~~~~~~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~ 329 (447)
++.+.+.....+. ..++++....+++..+++.+...+.++..+++.++++++.+.|++.|+++.. ...+++++.+
T Consensus 250 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~ 325 (384)
T 1bs0_A 250 --TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD--SCSAIQPLIV 325 (384)
T ss_dssp --HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS--CCSSBCCEEE
T ss_pred --HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC--CCCCEEEEEe
Confidence 6766665431111 1224566666666667776543245677888999999999999988888763 2345556665
Q ss_pred CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
.. +.+..++.+.|.++||.+..+..|+. +...+.+|++++..++ ++|++++++.|+++
T Consensus 326 ~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~~Ri~~~~~~~----~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 326 GD-NSRALQLAEKLRQQGCWVTAIRPPTV--PAGTARLRLTLTAAHE----MQDIDRLLEVLHGN 383 (384)
T ss_dssp ES-HHHHHHHHHHHHHTTEECCEECTTSS--CTTCEEECCBCCTTCC----HHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHCCcEEEeecCCCC--CCCCceEEEEEcCCCC----HHHHHHHHHHHHhh
Confidence 32 23456788888888999976543321 1223579999887666 99999999988764
No 44
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.96 E-value=1.5e-26 Score=227.72 Aligned_cols=332 Identities=17% Similarity=0.116 Sum_probs=224.3
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .++.+.+++...+.... .+|+.. ....++++...+++.+.+|.+ ++ +|.+++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~g 99 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP------AGIPELREALAEKFRRENGLSVTPE----ETIVTVG 99 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT------TCCHHHHHHHHHHHHHTTCCCCCGG----GEEEESH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCCHHHHHHHHHHHHHHhCCCCChH----HEEEcCC
Confidence 456888777773 46889999887765422 234322 112355555556777767754 43 2334666
Q ss_pred H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217 96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI 173 (447)
Q Consensus 96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli 173 (447)
+ +|+..++.++++|||+|++.+|.|.++.. .+...|. +++.+++++ +++.+|++++++++++ +|++|
T Consensus 100 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v 168 (385)
T 1b5p_A 100 GSQALFNLFQAILDPGDEVIVLSPYWVSYPE--------MVRFAGG--VVVEVETLPEEGFVPDPERVRRAITP-RTKAL 168 (385)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGGGTTCCCHHHHHTTCCT-TEEEE
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeecCcccCCCCCHHHHHHhcCC-CCEEE
Confidence 5 99999999999999999999998866431 2334454 555555654 3568999999999876 78999
Q ss_pred EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCccc--CCCCCceE
Q 013217 174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL--RGPRGGMI 242 (447)
Q Consensus 174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l--~Gp~gG~i 242 (447)
++++++||+ ..+ +++|.++|+++|+++|+|++|+. +...+ ...++. ..+++++|+||++ +|.|.|++
T Consensus 169 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~ 246 (385)
T 1b5p_A 169 VVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEH-LLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYA 246 (385)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBSSS-CCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEE
T ss_pred EEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchh-cccCC-CCCCHHHcCCCCEEEEEechhhcCCcccceEEE
Confidence 888888875 444 78999999999999999999753 33322 111111 3478899999987 46778999
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH---hcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH---AQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG 319 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 319 (447)
++++ ++.+.+......+..+. +.....+...+++. .. ...++..+++.++++.+.+.|.+.|+++..+
T Consensus 247 ~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~- 317 (385)
T 1b5p_A 247 CGPK------EVIKAMASVSRQSTTSP-DTIAQWATLEALTNQEASR-AFVEMAREAYRRRRDLLLEGLTALGLKAVRP- 317 (385)
T ss_dssp ECCH------HHHHHHHHHHHTTTCSC-CHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-
T ss_pred EeCH------HHHHHHHHHHhhccCCC-CHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-
Confidence 9987 67776655433332233 33333334445543 21 3356677888888999999998878876543
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
..+++.|+++...+.+..++.+.|.++||.+..+...+. ++.+|+++. ++ ++++++..+.|.+++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~-----~~~iRis~~--~~----~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 318 SGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA-----FGHVRLSYA--TS----EENLRKALERFARVL 382 (385)
T ss_dssp SBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC-----TTEEEEECC--SC----HHHHHHHHHHGGGGC
T ss_pred CeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCC-----CCeEEEEec--CC----HHHHHHHHHHHHHHH
Confidence 345566777754456778888888899999865432211 468999975 44 788888877776554
No 45
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.96 E-value=1.3e-26 Score=228.40 Aligned_cols=339 Identities=12% Similarity=0.054 Sum_probs=225.0
Q ss_pred HhhcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecC
Q 013217 18 RQFKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPL 93 (447)
Q Consensus 18 ~~~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~ 93 (447)
..+..|+|..+++.. ++.+++++...+.+.. .+|+.. ....++++...+++.+.+|. +++++ +.++
T Consensus 29 ~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~~v---~~t~ 98 (391)
T 3h14_A 29 AGRRIIHMEVGQPGTGAPRGAVEALAKSLETDA-LGYTVA------LGLPALRQRIARLYGEWYGVDLDPGRV---VITP 98 (391)
T ss_dssp TTCCCEECCCSSCSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGGGE---EEES
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CChHHHHHHHHHHHHHHhCCCCCHHHE---EEec
Confidence 345778998888753 7889999988776421 233322 11235555555677777774 44432 2234
Q ss_pred CcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcE
Q 013217 94 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKL 172 (447)
Q Consensus 94 sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kl 172 (447)
+|++|+..++.++++|||+|++..|.|.++.. .+...|. +++.++++++ ++.+|+++++++ ++++
T Consensus 99 g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~----~~~~ 164 (391)
T 3h14_A 99 GSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQ--------ILRALGL--VPVDLPTAPENRLQPVPADFAGL----DLAG 164 (391)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECCGGGTTSCCHHHHTTS----CCSE
T ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEeecCcccCCCCCHHHHHhc----CCeE
Confidence 44599999999999999999999988876531 2334454 5555556533 457899999865 7899
Q ss_pred EEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC--CcccEEEeCCCccc--CCCCCceEE
Q 013217 173 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--KYCDVVTTTTHKSL--RGPRGGMIF 243 (447)
Q Consensus 173 ii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~--~~~Di~~~s~~K~l--~Gp~gG~i~ 243 (447)
|+++.++||+ ..+ +++|.++|+++|+++++|++|. ++...+...... ...++++.|+||++ +|.|.|+++
T Consensus 165 v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 243 (391)
T 3h14_A 165 LMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYH-GIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMV 243 (391)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEE
T ss_pred EEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcch-hcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEE
Confidence 9988778775 555 7899999999999999999974 333332211111 13568899999997 566779999
Q ss_pred eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH 323 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 323 (447)
+++ ++.+.+....... .++++....++..++++ ....+++..+++.++++.+.+.|++.|+.....+..+.
T Consensus 244 ~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 314 (391)
T 3h14_A 244 VPE------DQVRVVERIAQNM-FICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAF 314 (391)
T ss_dssp CCG------GGHHHHHHHHHHT-TCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTT
T ss_pred eCH------HHHHHHHHHHhhh-ccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeE
Confidence 987 5666665433222 23445544444444554 22345777888899999999999887765543334456
Q ss_pred eEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 324 LVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+.|+++...+.+..++.+.|. ++||.+..+..++. +..++.+|+++.. + ++++++.++.|+++++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~~~~iRis~~~--~----~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 315 YVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP--ERGAGTLRFSYAR--A----TADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp EEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT--TTGGGEEEEECCS--C----HHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC--CCCCCeEEEEecC--C----HHHHHHHHHHHHHHHHHh
Confidence 677787654567778877754 46999976432221 1224689999764 3 799999999999988754
No 46
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.95 E-value=3.6e-27 Score=234.89 Aligned_cols=337 Identities=13% Similarity=0.113 Sum_probs=234.2
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .+|.|.+++...+.+. ..+|+.. ..++++.+++++++.+|. +++. |.+++|
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~l~~~l~~~~g~~~~~~~----v~~~~g 127 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREH-IFGYNYF--------NDDLYQAVIDWERKEHDYAVVKED----ILFIDG 127 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHC-CSSCBCC--------CHHHHHHHHHHHHHHHCCCCCGGG----EEEESC
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcC-CcCCCCC--------CHHHHHHHHHHHHHHhCCCCCHHH----EEEcCC
Confidence 456888766653 4799999998877642 2233321 135555667889999884 4442 333555
Q ss_pred H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC--CCCCCCCHHHHHHHhhhhCCcE
Q 013217 96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKL 172 (447)
Q Consensus 96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~id~~~l~~~~~~~~~kl 172 (447)
+ +|+.+++.+++++||+|++..+.|.++.. .+...|. +++.++++ ..++.+|+++|++++++.++++
T Consensus 128 ~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~ 197 (421)
T 3l8a_A 128 VVPAISIALQAFSEKGDAVLINSPVYYPFAR--------TIRLNDH--RLVENSLQIINGRFEIDFEQLEKDIIDNNVKI 197 (421)
T ss_dssp HHHHHHHHHHHHSCTEEEEEEEESCCHHHHH--------HHHHTTE--EEEEEECEEETTEEECCHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHCCC--EEEeccccccCCCeeeCHHHHHHHhhccCCeE
Confidence 5 89999999999999999999988876431 2334454 34444443 2345799999999998448999
Q ss_pred EEEcCCCCCC--C---CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-------cccEEEeCCCccc--CCCC
Q 013217 173 IIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPR 238 (447)
Q Consensus 173 ii~~~~~~~~--~---~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-------~~Di~~~s~~K~l--~Gp~ 238 (447)
|+++.++||+ . .++++|+++|+++|+++|+|++| .++...+....++. ..++++.|++|++ +|.+
T Consensus 198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~ 276 (421)
T 3l8a_A 198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIH-QDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTK 276 (421)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGC
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccc-cccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhh
Confidence 9998777775 3 36899999999999999999998 44444332222211 2348889999997 4667
Q ss_pred CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeee
Q 013217 239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVS 317 (447)
Q Consensus 239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~ 317 (447)
.|+++++++ ++.+.+.........++++...+++..++++.. ....++..+++.++++++.+.|++ .++.+..
T Consensus 277 ~G~~~~~~~-----~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~ 350 (421)
T 3l8a_A 277 NSFAIIQNE-----SLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG-KPWLEELKTVIEGNIKLVIKELEAKTKIKVME 350 (421)
T ss_dssp CEEEECCSH-----HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEEC
T ss_pred eEeEEcCCH-----HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeC
Confidence 799999842 677766554322234466777777777777753 233577788889999999999988 5888775
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 318 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 318 ~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+ ...++.|+++...+.+..++.+.| +++||.++.+...+. ...+.+|++++ ++ ++++++.++.|+++++
T Consensus 351 ~-~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~iRi~~~--~~----~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 351 P-EGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGK---EGKYFARLNVA--TP----KNTVQEALSRIISVFG 420 (421)
T ss_dssp C-SBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCG---GGTTEEEEECC--SC----HHHHHHHHHHHHHHC-
T ss_pred C-CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCC---CCCCEEEEEec--CC----HHHHHHHHHHHHHHHh
Confidence 4 346667788865455677788877 467999975432221 12468999976 34 8999999999988764
No 47
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.95 E-value=8.5e-27 Score=228.87 Aligned_cols=335 Identities=12% Similarity=0.139 Sum_probs=229.3
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .++.|.+++...+.+. ..+|+.. ..++++.+++++++.+| ++++. |.+++|
T Consensus 24 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~~~~~l~~~l~~~~g~~~~~~~----v~~~~g 90 (383)
T 3kax_A 24 EELIHAWIADMDFEVPQPIQTALKKRIEHP-IFGYTLP--------PENIGDIICNWTKKQYNWDIQKEW----IVFSAG 90 (383)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSC-CCCCCCC--------CTTHHHHHHHHHHHHHCCCCCGGG----EEEESC
T ss_pred CCeeecccccCCCCCCHHHHHHHHHHHhcC-CCCCCCC--------CHHHHHHHHHHHHHHhCCCCChhh----EEEcCC
Confidence 356888777764 4899999998887652 1233322 12345555678899999 44543 333555
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhCCcE
Q 013217 96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKL 172 (447)
Q Consensus 96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~~kl 172 (447)
++|+..++.++++|||+|++..+.|.++.. .+...|. +++.++++++ ++.+|+++|++++++ ++++
T Consensus 91 ~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~ 159 (383)
T 3kax_A 91 IVPALSTSIQAFTKENESVLVQPPIYPPFFE--------MVTTNNR--QLCVSPLQKQNDTYAIDFEHLEKQFQQ-GVKL 159 (383)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECSSCCHHHHH--------HHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTT-TCCE
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCcHHHHH--------HHHHcCC--EEEeccceecCCcEEEcHHHHHHHhCc-CCeE
Confidence 589999999999999999999988876531 2334454 5555555422 346999999999965 8999
Q ss_pred EEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-------cccEEEeCCCccc--CCCC
Q 013217 173 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPR 238 (447)
Q Consensus 173 ii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-------~~Di~~~s~~K~l--~Gp~ 238 (447)
|+++.++||+ ..+ +++|.++|+++|+++++|++|.. +...+....++. ..++++.|+||++ +|.|
T Consensus 160 v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 238 (383)
T 3kax_A 160 MLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSD-IIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQ 238 (383)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGC
T ss_pred EEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccc-cccCCCCceeHhhcCccccCcEEEEEEChhhccCcchh
Confidence 9988788875 555 56677779999999999999843 333332122221 2348899999987 4667
Q ss_pred CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEee
Q 013217 239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLV 316 (447)
Q Consensus 239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 316 (447)
.|+++++++ ++.+.+.........++++....++...+++.. ....++..+++.++++.+.+.|++. |+++.
T Consensus 239 ~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 312 (383)
T 3kax_A 239 ASIIIIPNE-----KLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTEC-NDWLNEIRFYIEDNAKFACEYIKDHIPTLSVM 312 (383)
T ss_dssp CEEEECCCH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC
T ss_pred heEEEeCCH-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEe
Confidence 799988542 676766554333333456666666665566542 1235677888899999999999874 88876
Q ss_pred eCCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 317 SGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 317 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
.+ ..+.+.|+++...+.+..++.+.|. ++||.++.+...+. ...+.+|+++. ++ +++++++++.|.+++
T Consensus 313 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRi~~~--~~----~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 313 KP-EGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGL---GGEEHIGINIG--CP----RSVLEEILNRLRHTF 382 (383)
T ss_dssp CC-SBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCT---TCTTEEEEECS--SC----HHHHHHHHHHHHHHH
T ss_pred cC-CceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcC---CCCCeEEEEEc--CC----HHHHHHHHHHHHHHh
Confidence 54 3456667887655567888888886 79999976432221 12468999976 34 899999999988765
No 48
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.95 E-value=1.8e-26 Score=225.37 Aligned_cols=320 Identities=15% Similarity=0.095 Sum_probs=225.9
Q ss_pred cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC-CCCccceeeecCCcH-
Q 013217 21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGS- 96 (447)
Q Consensus 21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~-~~~~~~~~v~~~sGs- 96 (447)
+.|+|..++|. .|+.|++++...+.+....+|+.. ...+++ +++++++|+ +++ .|.+++|+
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-------~~~~l~----~~la~~~g~~~~~----~i~~~~g~t 95 (367)
T 3euc_A 31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVP-------SSEALR----AKLKEVMQVPAGM----EVLLGNGSD 95 (367)
T ss_dssp TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCC-------CHHHHH----HHHHHHHTCCTTC----EEEEEEHHH
T ss_pred CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-------cHHHHH----HHHHHHhCCCCcc----eEEEcCCHH
Confidence 45889888886 578999999887764212344331 123443 678888998 444 33345655
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217 97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 176 (447)
Q Consensus 97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~ 176 (447)
+|+..++.++++|||+|++..+.|.++.. .+...|. +++.+++++ ++.+|++++++++++++|++|+++
T Consensus 96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 96 EIISMLALAAARPGAKVMAPVPGFVMYAM--------SAQFAGL--EFVGVPLRA-DFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp HHHHHHHHHTCCTTCEEEEEESCSCCSCH--------HHHTTTC--EEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCHHHHHH--------HHHHcCC--eEEEecCCC-CCCCCHHHHHHHhhccCCCEEEEc
Confidence 89999999999999999999988876531 2334454 555666663 678999999999987789999998
Q ss_pred CCCCCC--CC---ChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCC--cccEEEeCCCccc-CCCCCceEEeec
Q 013217 177 ASAYPR--DF---DYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRGGMIFFKK 246 (447)
Q Consensus 177 ~~~~~~--~~---~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~--~~Di~~~s~~K~l-~Gp~gG~i~~~~ 246 (447)
.++||+ .. ++++|.++|++| |+++++|++|.. +...+..+ .+. ..++++.|+||+. +|.|.|++++++
T Consensus 165 ~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~-~~~~~~~~-~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~ 242 (367)
T 3euc_A 165 YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP-FAQESWMS-RLTDFGNLLVMRTVSKLGLAGIRLGYVAGDP 242 (367)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCC-SSSCCSGG-GGGTCTTEEEEEECCCTTSCSCCEEEEEECH
T ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchh-hcccchHH-HHhhCCCEEEEecchhhcccccCceeeeeCH
Confidence 777775 43 467888889999 999999999743 32222111 111 2458899999983 456669999977
Q ss_pred CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeE
Q 013217 247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLV 325 (447)
Q Consensus 247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 325 (447)
++.+.+.....+ .+++....+++..+++. ...+++..+++.++++.+.+.|.+. |+++..+ ...++
T Consensus 243 ------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~ 309 (367)
T 3euc_A 243 ------QWLEQLDKVRPP---YNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS--AANFL 309 (367)
T ss_dssp ------HHHHHHGGGCCS---SCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC--SSSEE
T ss_pred ------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC--CCeEE
Confidence 777777665433 23566666666656654 2345778888999999999999885 8885543 34456
Q ss_pred EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
++++. +..++.+.|.++||.++.+..++ +...+.+|+++. + ++|+++++++|++++
T Consensus 310 ~~~~~----~~~~l~~~l~~~gi~v~~~~~~~---~~~~~~iRis~~---~----~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 310 LARVP----DAAQTFDRLLARKVLIKNVSKMH---PLLANCLRVTVS---T----PEENAQFLEAFAASL 365 (367)
T ss_dssp EEECS----CHHHHHHHHHTTTEECEECGGGC---GGGTTEEEEECC---C----HHHHHHHHHHHHHHT
T ss_pred EEECC----CHHHHHHHHHHCCeEEEECCccC---CCCCCEEEEecC---C----HHHHHHHHHHHHHHh
Confidence 77764 57888889999999997542211 123568999964 4 899999999998765
No 49
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.95 E-value=4.5e-26 Score=229.09 Aligned_cols=363 Identities=10% Similarity=0.020 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHHHhhc-CeeEecC-CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC
Q 013217 6 PEVCEIITKEKERQFK-SLELIAS-ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE 83 (447)
Q Consensus 6 ~~~~~~~~~e~~~~~~-~i~l~~~-~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~ 83 (447)
.++.+.+.+....... ..++-.. ..+.++.+.+++...+.... .++ ...+...++|+.+++++++++|++.
T Consensus 26 ~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~-~~~------~~~~~~~~l~~~~~~~la~l~g~~~ 98 (452)
T 2dgk_A 26 DVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNW-IDK------EEYPQSAAIDLRCVNMVADLWHAPA 98 (452)
T ss_dssp HHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBT-TCT------TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCC-CCh------hhChhHHHHHHHHHHHHHHHhCCCc
Confidence 4566666654422211 1221111 13567889999887664321 111 1223456788888999999999986
Q ss_pred Cc--cceeeecCCcHHHHHHHHHHhcC--------CC-----CEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217 84 NK--WGVNVQPLSGSPANFEVYTAILK--------PH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 148 (447)
Q Consensus 84 ~~--~~~~v~~~sGs~a~~~~~~al~~--------pg-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 148 (447)
+. ....+.+++|++|+..++.++.. +| ++|++++ .|.++. +.+...|. +++.++
T Consensus 99 ~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~--------~~~~~~G~--~v~~v~ 167 (452)
T 2dgk_A 99 PKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH--------KFARYWDV--ELREIP 167 (452)
T ss_dssp CTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH--------HHHHHTTC--EEEECC
T ss_pred ccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH--------HHHHHcCc--eEEEEe
Confidence 53 10123345566999988887753 55 5888877 554331 23344554 566666
Q ss_pred cCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHh------CCEEEEehhhhccccc--cccCCC
Q 013217 149 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVAD 218 (447)
Q Consensus 149 ~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~------g~~livD~a~~~g~~~--~~~~~~ 218 (447)
++++++.+|+++|++++++ +|++|+++.++|++ ..|+++|.++|+++ |+++++|++|..+..+ .+..+.
T Consensus 168 ~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 246 (452)
T 2dgk_A 168 MRPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW 246 (452)
T ss_dssp CBTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC
T ss_pred cCCCCCeECHHHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchh
Confidence 7644689999999999987 88998888766554 78999999999996 9999999998665431 111111
Q ss_pred C--CCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHH-HHhhh-ccCC-------CCCCCCcHHHHHHHHHHHHHhc
Q 013217 219 P--FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE-SAINN-AVFP-------GLQGGPHNHTIGGLAVCLKHAQ 286 (447)
Q Consensus 219 ~--~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~-~~i~~-~~~~-------~~~g~p~~~~~aal~~al~~~~ 286 (447)
. ..++|++++|+|||+.+|.+ |+++++++ ++. +.+.. ..+. +..++......++++++++.+.
T Consensus 247 ~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg 321 (452)
T 2dgk_A 247 DFRLPRVKSISASGHKFGLAPLGCGWVIWRDE-----EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG 321 (452)
T ss_dssp STTSTTEEEEEEETTTTTCCCSSCEEEEESSG-----GGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH
T ss_pred hcCCCCCcEEEECcccccCCCCCeEEEEEcCH-----HHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh
Confidence 1 23699999999999866555 99999763 222 22211 0011 1233444445556666777655
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC---CCCeeEEecCCCC---CCCHHHHHHHHhhcCeEEccCCCCCCC
Q 013217 287 SPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG---SDNHLVLVDLRPM---GIDGARVEKILDMASITLNKNSVPGDK 359 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~v~~~~~---~~~~~~~~~~L~~~gI~v~~~~~p~~~ 359 (447)
..++++..++..++++++.+.|.+. |++++.++ ...+++.+.+.+. .++..++.+.|.+.||.++....|...
T Consensus 322 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ 401 (452)
T 2dgk_A 322 REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA 401 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCccc
Confidence 5678888999999999999999985 58887542 2334444444332 245578999999999976543233221
Q ss_pred CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 360 ~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
.....+|+++...+| ++|++++++.|++++...
T Consensus 402 --~~~~~lRis~~~~~t----~e~id~li~~l~~~~~~~ 434 (452)
T 2dgk_A 402 --TDIVVMRIMCRRGFE----MDFAELLLEDYKASLKYL 434 (452)
T ss_dssp --TTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEEEecCCCC----HHHHHHHHHHHHHHHHHH
Confidence 123479999887777 999999999999987754
No 50
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.95 E-value=3.2e-28 Score=245.65 Aligned_cols=294 Identities=14% Similarity=0.135 Sum_probs=211.2
Q ss_pred HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCE---EEEecCCCCcccCCCccccccccccccceeE--
Q 013217 70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-- 143 (447)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~---Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-- 143 (447)
.+++++++++|++++++ .+++|+ +++..++.++++|||+ |++..+.|++...... ..+...|....
T Consensus 115 ~l~~~la~~~g~~~~~v----~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~----~~~~~~G~~~~~~ 186 (465)
T 3e9k_A 115 SIVGLMKDIVGANEKEI----ALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIE----SQLQLHGLNIEES 186 (465)
T ss_dssp HHHGGGHHHHTCCGGGE----EECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHH----HHHHHTTCCHHHH
T ss_pred HHHHHHHHHcCCCcCCE----EEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHH----HHHHHcCCcceee
Confidence 34578999999987543 235555 8888899999877665 9999999876432110 01122333211
Q ss_pred -EEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217 144 -SMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 218 (447)
Q Consensus 144 -~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~ 218 (447)
+...+.+ +++.+|+++++++++++ ++++|++++++|++ ..|+++|.++|+++|+++++|++|+.|.++.++...
T Consensus 187 ~v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~ 265 (465)
T 3e9k_A 187 MRMIKPRE-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW 265 (465)
T ss_dssp EEEECCCT-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH
T ss_pred eEEEecCC-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc
Confidence 1111232 46789999999999742 78999998777764 789999999999999999999999888664432221
Q ss_pred CCCcccEEEeCCCcccC-CCCC-ceEEeecCCcchhhHHHHhhhccC--------------------C----CCCCCCcH
Q 013217 219 PFKYCDVVTTTTHKSLR-GPRG-GMIFFKKDPVLGVELESAINNAVF--------------------P----GLQGGPHN 272 (447)
Q Consensus 219 ~~~~~Di~~~s~~K~l~-Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~--------------------~----~~~g~p~~ 272 (447)
++|++++|+||+++ ||.| |+++++++ +.+.+..... + ...|+|+.
T Consensus 266 ---~~D~~~~s~~K~l~~gp~~~g~l~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 336 (465)
T 3e9k_A 266 ---GVDFACWCSYKYLNAGAGGIAGAFIHEK------HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPI 336 (465)
T ss_dssp ---TCCEEEECSSSTTCCCTTCCCEEEECGG------GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCH
T ss_pred ---CCCEEEECcccccccCCCceEEEEEcHH------HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccH
Confidence 48999999999994 8887 99999873 3332221100 0 01358888
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-----------CCcEeeeCCC---CCeeEEecCCCCCCCHHH
Q 013217 273 HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-----------LGYKLVSGGS---DNHLVLVDLRPMGIDGAR 338 (447)
Q Consensus 273 ~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-----------~g~~~~~~~~---~~~~~~v~~~~~~~~~~~ 338 (447)
..++++.++++.+...++++..++..++++++.+.|++ .|++++.+.. ...++++.+. .+..+
T Consensus 337 ~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~---~~~~~ 413 (465)
T 3e9k_A 337 LLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS---VPNKD 413 (465)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC---CTTCC
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec---CCHHH
Confidence 99999999998876656788889999999999999988 6888876421 1334555554 24567
Q ss_pred HHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 339 VEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 339 ~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+.+.|.++||.++.. .++.||+++ +.+++ ++|++++++.|+++++.
T Consensus 414 l~~~L~~~Gi~v~~~---------~~~~iRis~~~~~~t----~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 414 VFQELEKRGVVCDKR---------NPNGIRVAPVPLYNS----FHDVYKFTNLLTSILDS 460 (465)
T ss_dssp HHHHHHTTTEECEEE---------TTTEEEEBCCTTTCC----HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCEEEecC---------CCCEEEEeCcccCCC----HHHHHHHHHHHHHHHHh
Confidence 888898899998631 246899997 78887 99999999999998764
No 51
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.95 E-value=7.8e-28 Score=237.30 Aligned_cols=332 Identities=17% Similarity=0.128 Sum_probs=221.6
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
+.++|-.+.+.+++.+++++...+...+ |+ +..+...+++ +.+++++|.+. .+.++||++|+.
T Consensus 23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~---~~-----~~~~~~~~l~----~~la~~~~~~~-----~i~~~~gt~al~ 85 (391)
T 3dr4_A 23 DLPRISVAAPRLDGNERDYVLECMDTTW---IS-----SVGRFIVEFE----KAFADYCGVKH-----AIACNNGTTALH 85 (391)
T ss_dssp -----CCCCCCCCSSHHHHHHHHHHHTC---CS-----SCSHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHH
T ss_pred CCceeccCCCCCCHHHHHHHHHHHHcCC---cc-----CCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHH
Confidence 4456666777788999999988776532 11 1223344554 67888999873 355689999999
Q ss_pred HHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217 101 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 179 (447)
Q Consensus 101 ~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~ 179 (447)
.++.++ +++||+|++.++.|.++.. .+...|. +++.++++++++.+|++++++++++ ++++|+++. .
T Consensus 86 ~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~n-~ 153 (391)
T 3dr4_A 86 LALVAMGIGPGDEVIVPSLTYIASAN--------SVTYCGA--TPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPVH-L 153 (391)
T ss_dssp HHHHHHTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCBC-G
T ss_pred HHHHHcCCCCcCEEEECCCchHHHHH--------HHHHCCC--EEEEEecCccccCcCHHHHHHhcCC-CceEEEEEC-C
Confidence 999999 9999999999998877632 2334454 5666667766789999999999876 888887542 2
Q ss_pred CCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeC--CCcccCCCCCceEEeecCCcchhhHHHH
Q 013217 180 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVELESA 257 (447)
Q Consensus 180 ~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s--~~K~l~Gp~gG~i~~~~~~~~~~~~~~~ 257 (447)
++...|+++|.++|+++|+++++|++|+.|....+.....+ .|++++| .||+++|++||+++++++ ++.+.
T Consensus 154 tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~--~di~~~S~s~~K~l~~g~gg~~~~~~~-----~~~~~ 226 (391)
T 3dr4_A 154 YGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL--GDCATFSFFGNAIITTGEGGMITTNDD-----DLAAK 226 (391)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS--SSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHH
T ss_pred CCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeeccc--CCEEEEECCCCCcCCcCCeEEEEECCH-----HHHHH
Confidence 22378999999999999999999999988876554322222 3555555 779998888899888763 56555
Q ss_pred hhhccCCCC----------CCC-CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC--CC----
Q 013217 258 INNAVFPGL----------QGG-PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG--GS---- 320 (447)
Q Consensus 258 i~~~~~~~~----------~g~-p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~---- 320 (447)
+......+. .|. ... .++.+++......++++..++..++++++.+.|.+.|+.+... ..
T Consensus 227 ~~~~~~~g~~~~~~~~~~~~g~~~~~---~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 303 (391)
T 3dr4_A 227 MRLLRGQGMDPNRRYWFPIVGFNYRM---TNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRH 303 (391)
T ss_dssp HHHHHBTTCCTTSTTCCSSCCCBCBC---CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCC
T ss_pred HHHHHhcCCCCCCcccccccccccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcc
Confidence 543221111 010 111 1222222222224567778888999999999998878776543 11
Q ss_pred CCeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCC-C--------------CCCeEEEecCccccCCCCHHHH
Q 013217 321 DNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSA-L--------------VPGGIRIGSPAMTTRGFSEKEF 384 (447)
Q Consensus 321 ~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~-~--------------~~~~iRig~~~~~~~g~~~~di 384 (447)
..+++++.+.. .+.+..++.+.|.++||.++.+..|.+..+ + ....+|++++..+| ++|+
T Consensus 304 ~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t----~edi 379 (391)
T 3dr4_A 304 VFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLT----EADI 379 (391)
T ss_dssp CCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCC----HHHH
T ss_pred eeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCC----HHHH
Confidence 12233444432 256788899999999999886543322111 0 12469999887777 9999
Q ss_pred HHHHHHHHHHH
Q 013217 385 VAIADFIHEGV 395 (447)
Q Consensus 385 ~~l~~~i~~~l 395 (447)
+++++.|++++
T Consensus 380 ~~~~~~l~~~l 390 (391)
T 3dr4_A 380 DRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 52
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.95 E-value=4.2e-28 Score=239.71 Aligned_cols=342 Identities=15% Similarity=0.153 Sum_probs=217.0
Q ss_pred CeeEe-cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 22 SLELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 22 ~i~l~-~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
.+-|. ++..++++.+++++...+.+.+ ++++..+..+. ......+..++++++++|++++.+ +.+++|++|+.
T Consensus 21 ~iyld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~l~~~la~~~~~~~~~v---~~~~g~t~al~ 94 (400)
T 3vax_A 21 MTYLDAAATTRVDQRVADIVLHWMTAEF--GNAGSRHEYGI-RAKRGVERAREYLASTVSAEPDEL---IFTSGATESNN 94 (400)
T ss_dssp -CCCCCCCCSSSCHHHHHHHHHHHHHHH--SCSSCHHHHHH-HHHHHHHHHHHHHHHHTTCCGGGE---EEESCHHHHHH
T ss_pred cEEecCCCCCCCCHHHHHHHHHHHHhcc--CCCcccchhHH-HHHHHHHHHHHHHHHHcCCCCCcE---EEeCCHHHHHH
Confidence 34443 3444679999999998887543 34443332222 223333456789999999986532 22344569999
Q ss_pred HHHHHhc----CCCC-EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217 101 EVYTAIL----KPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 175 (447)
Q Consensus 101 ~~~~al~----~pgd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~ 175 (447)
.++.+++ +||| +|++.+++|+++..... .+...|. +++.++++ .++.+|+++|++++++ +|++|++
T Consensus 95 ~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~ 165 (400)
T 3vax_A 95 IALLGLAPYGERTGRRHIITSAIEHKAVLEPLE-----HLAGRGF--EVDFLTPG-PSGRISVEGVMERLRP-DTLLVSL 165 (400)
T ss_dssp HHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHH-----HHHTTTC--EEEEECCC-TTCCCCHHHHHTTCCT-TEEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEECccccHhHHHHHH-----HHHhcCC--eEEEEccC-CCCCcCHHHHHHhcCC-CceEEEE
Confidence 9999987 8999 99999988876532111 1112343 55666666 4678999999999987 8999999
Q ss_pred cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEE-eecCCcch
Q 013217 176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIF-FKKDPVLG 251 (447)
Q Consensus 176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~-~~~~~~~~ 251 (447)
+.++||+ ..|+++|.++|+++|+++++|++|+.|....+... . +|++++|+|| +.||.| |+++ ++++
T Consensus 166 ~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~--~--~d~~~~s~~K-~~g~~g~g~~~~~~~~---- 236 (400)
T 3vax_A 166 MHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTT--P--IDMISISGHK-IGAPKGVGALVTRRRE---- 236 (400)
T ss_dssp CSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGS--C--CSEEEEETGG-GTSCSSCEEEEECBCS----
T ss_pred ECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhh--c--CcEEEEeHHH-hCCCCceEEEEEecch----
Confidence 8777775 78999999999999999999999987654333211 1 7999999999 567776 8888 8762
Q ss_pred hhHH---HHhhhccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC-
Q 013217 252 VELE---SAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD- 321 (447)
Q Consensus 252 ~~~~---~~i~~~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~- 321 (447)
++. ..+..... ....++++...++++..+++.+. .++++..+++.++++++.+.|...|+++..+...
T Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 314 (400)
T 3vax_A 237 -EMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHV 314 (400)
T ss_dssp -SSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSB
T ss_pred -hccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccC
Confidence 111 11221111 11245677777887777887654 3567888999999999999998668887654221
Q ss_pred -CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCC----------CCCCC----CCeEEEec-CccccCCCCHHHHH
Q 013217 322 -NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD----------KSALV----PGGIRIGS-PAMTTRGFSEKEFV 385 (447)
Q Consensus 322 -~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~----------~~~~~----~~~iRig~-~~~~~~g~~~~di~ 385 (447)
.+++++.+. +.+..++.+.|. +||.++.+..... ..+.. .+.+|+++ +..++ ++|++
T Consensus 315 ~~~~~~~~~~--~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t----~e~i~ 387 (400)
T 3vax_A 315 VPHILNLSFE--DVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQAT----DLDVE 387 (400)
T ss_dssp CTTEEEEECT--TCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC------------
T ss_pred CCCEEEEEeC--CCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCC----HHHHH
Confidence 234444443 457888999999 9998865321100 00011 36899998 77776 89999
Q ss_pred HHHHHHHHHHH
Q 013217 386 AIADFIHEGVE 396 (447)
Q Consensus 386 ~l~~~i~~~l~ 396 (447)
++++.|+++++
T Consensus 388 ~~~~~l~~~~~ 398 (400)
T 3vax_A 388 ELARGVAKLKP 398 (400)
T ss_dssp -----------
T ss_pred HHHHHHHHHhc
Confidence 99999988765
No 53
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.95 E-value=2.4e-26 Score=226.30 Aligned_cols=339 Identities=13% Similarity=0.077 Sum_probs=230.9
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCc-cceeeecCC
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENK-WGVNVQPLS 94 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~-~~~~v~~~s 94 (447)
+..++|..+++. .++.+.+++...+.+. ..+|+.. ....++++...+++.+.+|. +++. + +.+++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~~~~~g~~~~~~~~v---~~~~g 95 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKG-LTHYGPN------IGLLELREAIAEKLKKQNGIEADPKTEI---MVLLG 95 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHHCCCCCTTTSE---EEESS
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCC-CCCCCCC------CCcHHHHHHHHHHHHHHhCCCCCCCCeE---EEcCC
Confidence 467888777764 5789999998877542 1233321 12345665556677777784 4443 2 22345
Q ss_pred cHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217 95 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI 173 (447)
Q Consensus 95 Gs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli 173 (447)
|++|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++ +++.+|+++|++++++ ++++|
T Consensus 96 ~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v 164 (389)
T 1gd9_A 96 ANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGG--KPVEVPTYEEDEFRLNVDELKKYVTD-KTRAL 164 (389)
T ss_dssp TTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTC--EEEEEECCGGGTTCCCHHHHHHHCCT-TEEEE
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCC--EEEEeccCCccCCCCCHHHHHHhcCc-CceEE
Confidence 5699999999999999999999998877531 2334454 455555553 2467899999999987 88998
Q ss_pred EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhcccccccc-CCC--CC---CcccEEEeCCCcccC--CCCCc
Q 013217 174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PF---KYCDVVTTTTHKSLR--GPRGG 240 (447)
Q Consensus 174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~--~~---~~~Di~~~s~~K~l~--Gp~gG 240 (447)
+++.++||+ .. ++++|.++|+++|+++++|++|+.+.. .+. ... .+ ...|++++|+||+++ |.|.|
T Consensus 165 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (389)
T 1gd9_A 165 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 243 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC-TTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc-CCCCCCCHhhccCCCCCEEEEecChhhcCCcccceE
Confidence 888777765 44 489999999999999999999865433 221 111 11 246899999999973 56679
Q ss_pred eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEeeeCC
Q 013217 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVSGG 319 (447)
Q Consensus 241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 319 (447)
++++++ ++.+.+........ .+++....+++..+++..... .+++..+++.++++.+.+.|++.|+++..+
T Consensus 244 ~~~~~~------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~- 315 (389)
T 1gd9_A 244 FVAAPS------WIIERMVKFQMYNA-TCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKP- 315 (389)
T ss_dssp EEECCH------HHHHHHHHHHTTTT-CSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-
T ss_pred EEEECH------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCC-
Confidence 999987 77777765433322 334444444445555532211 356777888899999999998888877643
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 320 SDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 320 ~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
..+.++|+++...+.+..++.+.|. ++||.+..+..++. ..++.+|++++. + +++++++++.|.++++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRi~~~~--~----~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 316 KGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK---AGEGYVRISYAT--A----YEKLEEAMDRMERVLKE 385 (389)
T ss_dssp CBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG---GGTTBEEEECCS--C----HHHHHHHHHHHHHHHHH
T ss_pred CeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC---CCCCeEEEEecC--C----HHHHHHHHHHHHHHHHh
Confidence 3345566676532456778888886 89999975432221 124589999763 4 89999999999888764
No 54
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.95 E-value=9.6e-27 Score=230.91 Aligned_cols=321 Identities=15% Similarity=0.173 Sum_probs=223.8
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCccc-CchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCC
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 110 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~-~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pg 110 (447)
.+|.+.+++.+.+.. |..++.+.+.. +..+...+++ +++++++|.+. .+.+++|++|+..++.++++||
T Consensus 74 ~~p~v~~a~~~~l~~-~~~~~~~~~~~~g~~~~~~~l~----~~la~~~g~~~-----~i~~~sGt~a~~~~l~~~~~~g 143 (409)
T 3kki_A 74 NHPLIKARLAKSLLE-EQQSLFMSASFLQNDYDKPMIE----KRLAKFTGFDE-----CLLSQSGWNANVGLLQTICQPN 143 (409)
T ss_dssp TCHHHHHHHHHHHHS-CCCCCCSBGGGGCSTTTSCHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHH-cCCCCCccccccCCcHHHHHHH----HHHHHHhCCCe-----EEEecchHHHHHHHHHHhcCCC
Confidence 379999999887753 44444333322 2223333444 67888999875 3446999999999999999999
Q ss_pred CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHH
Q 013217 111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPR 188 (447)
Q Consensus 111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~ 188 (447)
|.|++.++.|+++.. .+...|. ++++++ .+|+++|++++++.++++|+++++++++ ..++++
T Consensus 144 d~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~ 207 (409)
T 3kki_A 144 TNVYIDFFAHMSLWE--------GARYANA--QAHPFM------HNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE 207 (409)
T ss_dssp CEEEEETTSCHHHHH--------HHHHTTC--EEEEEC------TTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred CEEEECCCcCHHHHH--------HHHHcCC--eEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence 999999988876532 2334454 444533 2689999999987679999999777764 788999
Q ss_pred HHHHHHHhCCEEEEehhhhcccccc-cc--C-CCCC-CcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccC
Q 013217 189 MRQIADAVGALLMMDMAHISGLVAA-SV--V-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF 263 (447)
Q Consensus 189 i~~ia~~~g~~livD~a~~~g~~~~-~~--~-~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~ 263 (447)
|.++|++||+++++|++|+.|.... +. . ...+ +..|+++.|+||+++++ ||++++++ ++.+.+.....
T Consensus 208 l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~------~~~~~~~~~~~ 280 (409)
T 3kki_A 208 LVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-AGAIWCNN------EVNRCVPFISY 280 (409)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-CEEEEESS------SGGGTHHHHCH
T ss_pred HHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-ceEEEECH------HHHHHHHHhCc
Confidence 9999999999999999987654321 10 0 0011 24689999999999766 89999987 44444433211
Q ss_pred CC-CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHH
Q 013217 264 PG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKI 342 (447)
Q Consensus 264 ~~-~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 342 (447)
+. ..++++...+++..++++.... .+++.+++.++++++.+.|.+.|+++.. ...++++.+... .+..++.+.
T Consensus 281 ~~~~~~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 354 (409)
T 3kki_A 281 PAIFSSTLLPYEAAGLETTLEIIES--ADNRRQHLDRMARKLRIGLSQLGLTIRS---ESQIIGLETGDE-RNTEKVRDY 354 (409)
T ss_dssp HHHHSBCCCHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHTTTCCCCC---SSSEEEEEEESH-HHHHHHHHH
T ss_pred CccccCCCcHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCccCC---CCCEEEEEeCCH-HHHHHHHHH
Confidence 11 1223455666666667776542 2567788889999999999998887663 345566665431 234568888
Q ss_pred HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 343 LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 343 L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
|.++||.+.....|.. +...+.+|++++..++ ++|++++++.|+++++.
T Consensus 355 L~~~Gv~v~~~~~~~~--~~~~~~iRi~~~~~~t----~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 355 LESNGVFGSVFCRPAT--SKNKNIIRLSLNSDVN----DEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHTTEECEEECTTSS--CTTCEEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred HHHCCceEeeeCCCCc--CCCCcEEEEEccCCCC----HHHHHHHHHHHHHHHhc
Confidence 8888999875433322 2234689999987777 99999999999998864
No 55
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.95 E-value=9.1e-28 Score=234.76 Aligned_cols=334 Identities=13% Similarity=0.073 Sum_probs=224.1
Q ss_pred cCeeEec--CCCCCCHHHHHHHhhhhhccCCCCCC-CCc-ccCchhHHHHHHHHHHHH-HHHHcCCCCCccceeeecCCc
Q 013217 21 KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLP-GKR-YYGGNEYIDELETLCQKR-ALAAFNLDENKWGVNVQPLSG 95 (447)
Q Consensus 21 ~~i~l~~--~~n~~~~~v~~a~~~~~~~~~~~g~~-~~~-~~~g~~~~~~le~~~~~~-~~~~~g~~~~~~~~~v~~~sG 95 (447)
..+.|.. +.+.+++.+++++...+......++. ..+ .+...+...++ +++ +++++|.+ . |.+++|
T Consensus 8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~la~~~~~~--~----v~~~~g 77 (371)
T 2e7j_A 8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDF----IHNQLPKFLGCD--V----ARVTNG 77 (371)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHH----HHTHHHHHTTSS--E----EEEESS
T ss_pred CcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHH----HHHHHHHHcCCC--E----EEEeCC
Confidence 3455544 35678999999998877543211111 001 01122233344 468 89999987 2 223555
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc--cCCCCCCCCHHHHHHHhhh----h
Q 013217 96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR--LDESTGLVDYDMLEKTAIL----F 168 (447)
Q Consensus 96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~id~~~l~~~~~~----~ 168 (447)
++|+..++.++++|||+|++.++.|.++.. .+...|. +++.++ ++ +++.+|+++|++++++ .
T Consensus 78 ~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~ 146 (371)
T 2e7j_A 78 AREAKFAVMHSLAKKDAWVVMDENCHYSSYV--------AAERAGL--NIALVPKTDY-PDYAITPENFAQTIEETKKRG 146 (371)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHHTTC--EEEEECCCCT-TTCCCCHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHhCCCCEEEEccCcchHHHH--------HHHHcCC--eEEEeecccC-CCCCcCHHHHHHHHHhhcccC
Confidence 699999999999999999999998876542 2334454 555555 55 3578999999999974 2
Q ss_pred CCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEee
Q 013217 169 RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFK 245 (447)
Q Consensus 169 ~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~ 245 (447)
++++|++++++||+ ..|+++|.++|+++|+++++|++|+.|......... +.|++++|+||++++|.+ |+++++
T Consensus 147 ~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~~~~~~~G~~~~~ 223 (371)
T 2e7j_A 147 EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGMK 223 (371)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEEC
T ss_pred CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhc---CCCEEEecCCcCCCCCCCcEEEEEe
Confidence 78999888777664 779999999999999999999999776432111110 379999999999877655 999998
Q ss_pred cCCcchhhHHHH-hhhccCCCC------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHH--HHHHHHHHHHHHHCCcEee
Q 013217 246 KDPVLGVELESA-INNAVFPGL------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV--VSNCRALASRLVELGYKLV 316 (447)
Q Consensus 246 ~~~~~~~~~~~~-i~~~~~~~~------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~g~~~~ 316 (447)
+ ++.+. +......+. .++++...++++..+++.+.. ++.+++ .++++++.+.|.+.|+++.
T Consensus 224 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~ 293 (371)
T 2e7j_A 224 E------EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKLGIKQL 293 (371)
T ss_dssp T------TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred c------hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCcEEe
Confidence 8 45555 544322111 356677777777667765432 456677 7889999999988888877
Q ss_pred eCCC-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCCCeEE-EecCcc-ccCCCCHHHHHHHHHHHH
Q 013217 317 SGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIR-IGSPAM-TTRGFSEKEFVAIADFIH 392 (447)
Q Consensus 317 ~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iR-ig~~~~-~~~g~~~~di~~l~~~i~ 392 (447)
.+.. ..+++++++. +..++.+.|.++||.+.. ..+... ....++.+| ++++.. ++ ++|++++++.|+
T Consensus 294 ~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~----~~~i~~~~~~l~ 364 (371)
T 2e7j_A 294 GDNPHNHDLMFFHAE----VLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLS----DEEVDYVLNAFK 364 (371)
T ss_dssp SSSSCCSSEEEEECH----HHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCC----HHHHHHHHHHHH
T ss_pred cCCCccCceEEEECC----CHHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCC----HHHHHHHHHHHH
Confidence 5421 3456777764 567788888899998864 111000 011145799 998765 55 999999999999
Q ss_pred HHHHH
Q 013217 393 EGVEI 397 (447)
Q Consensus 393 ~~l~~ 397 (447)
++++.
T Consensus 365 ~~~~~ 369 (371)
T 2e7j_A 365 EIIEK 369 (371)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88763
No 56
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=4.1e-26 Score=220.13 Aligned_cols=323 Identities=18% Similarity=0.206 Sum_probs=220.2
Q ss_pred HHHHHHHHHHhhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCcc
Q 013217 9 CEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKW 86 (447)
Q Consensus 9 ~~~~~~e~~~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~ 86 (447)
.+....+....+..|.|..++|+ ++|.|++++...+.. ..+||. ....+++ +.+++++|++++.
T Consensus 5 ~~~~~~~~~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~--~~~y~~-------~~~~~lr----~~la~~~~~~~~~- 70 (337)
T 3p1t_A 5 GEAMDTEVRAAAQAVCLAFNENPEAVEPRVQAAIAAAAAR--INRYPF-------DAEPRVM----RKLAEHFSCPEDN- 70 (337)
T ss_dssp ---------CCCCCEECSSCCCCSCCCHHHHHHHHHHGGG--TTSCCT-------THHHHHH----HHHHHHHTSCGGG-
T ss_pred hhhccccccCCCCceEeeCCCCCCCCCHHHHHHHHHhhhh--hccCCC-------CchHHHH----HHHHHHhCcCHHH-
Confidence 34444555666778999999886 478999999887654 123332 2233444 6788889988753
Q ss_pred ceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHh
Q 013217 87 GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA 165 (447)
Q Consensus 87 ~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~ 165 (447)
|.+++|+ +++..++.++ |||+|++.+|.|.++.. .+...|. +++.++++ +++.+|+++++++
T Consensus 71 ---i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~- 133 (337)
T 3p1t_A 71 ---LMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRA--------RIAVSGL--RHFEIGLT-DDLLLDPNDLAQV- 133 (337)
T ss_dssp ---EEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHH--------HHTTSCC--EEEEECBC-TTSSBCHHHHTTC-
T ss_pred ---EEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH--------HHHHcCC--EEEEecCC-CCCCCCHHHHHhh-
Confidence 3447776 7888777776 99999999988876532 2334454 55666666 4578999999875
Q ss_pred hhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCccc--CCCCCce
Q 013217 166 ILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL--RGPRGGM 241 (447)
Q Consensus 166 ~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l--~Gp~gG~ 241 (447)
.++++|++++++||+ ..|.+++.++|+++++ +++|++|. ++...+.........+++++|+||++ +|+|.|+
T Consensus 134 --~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~-~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~ 209 (337)
T 3p1t_A 134 --SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYV-DYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGA 209 (337)
T ss_dssp --CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTG-GGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEE
T ss_pred --cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCCh-hhccccccccccCCCEEEEeeCchhccCcchheEE
Confidence 278999998888775 8899999999999997 56699974 33222211111224679999999998 4778899
Q ss_pred EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217 242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD 321 (447)
Q Consensus 242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 321 (447)
++.++ ++.+.+.....+ ++++....+++..+++.. ..+.+..+++.++++.+.+.|++.|+++..+ .
T Consensus 210 ~~~~~------~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~ 276 (337)
T 3p1t_A 210 LFGPS------ELIAAMKRKQWF---CNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVASS--E 276 (337)
T ss_dssp EECCH------HHHHHHHTTSCT---TCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC--S
T ss_pred EEeCH------HHHHHHHhhcCC---CCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEECCC--C
Confidence 99987 777777654322 345555555555555431 2356677888888999999999888877543 2
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
..++++... ++.++.+.|.++||.++.+..++ .++.+|+++. + ++|++++.++|++++
T Consensus 277 ~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~---~----~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 277 ANFVLVENA----AGERTLRFLRERGIQVKDAGQFG-----LHHHIRISIG---R----EEDNDRLLAALAEYS 334 (337)
T ss_dssp SSEEEEECT----TTHHHHHHHHHTTEECEEGGGGT-----CCSEEEEECC---C----HHHHHHHHHHHHHHT
T ss_pred CeEEEEEcC----CHHHHHHHHHHCCeEEEECccCC-----CCCeEEEecC---C----HHHHHHHHHHHHHHh
Confidence 344555543 34678888999999997653332 1468999965 3 899999999998764
No 57
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.95 E-value=5e-26 Score=224.03 Aligned_cols=335 Identities=12% Similarity=0.057 Sum_probs=226.7
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG 95 (447)
+..++|..+++. .++.+.+++...+.+. ..+|+.. ....++++...+++.+.+|++ ++ +|.+++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~~~~~g~~~~~~----~v~~~~g 98 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQG-KTRYGPA------AGEPRLREAIAQKLQRDNGLCYGAD----NILVTNG 98 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGG----GEEEESH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCCHHHHHHHHHHHHHhcCCCCChh----hEEEcCC
Confidence 456888777764 4789999988877542 1233321 223456666667787777864 33 2334565
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217 96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI 173 (447)
Q Consensus 96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli 173 (447)
++|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++ +++.+|+++|++++++ ++++|
T Consensus 99 ~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v 167 (388)
T 1j32_A 99 GKQSIFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEG--TPVILPTTVETQFKVSPEQIRQAITP-KTKLL 167 (388)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCGGGTTCCCHHHHHHHCCT-TEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCC--EEEEecCCcccCCCCCHHHHHHhcCc-CceEE
Confidence 599999999999999999999998876531 2334454 455555553 2467999999999987 88999
Q ss_pred EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCC---C----CcccEEEeCCCccc--CCCCC
Q 013217 174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F----KYCDVVTTTTHKSL--RGPRG 239 (447)
Q Consensus 174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~---~----~~~Di~~~s~~K~l--~Gp~g 239 (447)
++++++||+ .. ++++|.++|+++|+++++|++|+. +...+....+ + .+.|+++.|+||++ +|.|.
T Consensus 168 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~ 246 (388)
T 1j32_A 168 VFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEK-ILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRV 246 (388)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCC
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCCCHHHccccccCCEEEEeechhccCCcccce
Confidence 888777764 43 489999999999999999999754 3332211111 1 13689999999998 45667
Q ss_pred ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC
Q 013217 240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG 318 (447)
Q Consensus 240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 318 (447)
|++++++ ++.+.+......+..+. +....++...+++.. ...+++..+++.++++.+.+.|++. |+++..+
T Consensus 247 G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 318 (388)
T 1j32_A 247 GFLAGPV------PLVKAATKIQGHSTSNV-CTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKP 318 (388)
T ss_dssp EEEECCH------HHHHHHHHHHHTTTCSC-CHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC
T ss_pred EEEEeCH------HHHHHHHHHHhhcccCC-CHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC
Confidence 9999987 67776655433333333 333333333455532 3345777888899999999999885 8876643
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 319 GSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 319 ~~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
..+.+.|+++...+.+..++.+.|.+ +||.+..+...+ .++.+|+++. ++ +++++++++.|.++++.
T Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~~~iRis~~--~~----~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 319 -DGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-----ADDCIRLSYA--TD----LDTIKRGMERLEKFLHG 386 (388)
T ss_dssp -CBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-----CTTBEEEECC--SC----HHHHHHHHHHHHHHHHH
T ss_pred -CeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhC-----CCCcEEEEec--CC----HHHHHHHHHHHHHHHHH
Confidence 33455566664324567788887764 899986542221 1458999975 44 89999999999887753
No 58
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.95 E-value=7.9e-26 Score=220.55 Aligned_cols=317 Identities=16% Similarity=0.120 Sum_probs=226.8
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 97 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~ 97 (447)
+..|+|..++|+ +++.+++++...+.. ..+||.. ...++ ++++++++|++++++ +.+++|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~-------~~~~l----r~~la~~~~~~~~~v---~~~~g~t~ 95 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVE--TEIYPDG-------WASSL----RKEVADFYQLEEEEL---IFTAGVDE 95 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSC--CCBC-----------CHHH----HHHHHHHHTCCGGGE---EEESSHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHH--hhcCCCc-------chHHH----HHHHHHHhCCChhhE---EEeCCHHH
Confidence 356888888886 479999999876643 2234321 12233 468888999876533 22344458
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 177 (447)
Q Consensus 98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~ 177 (447)
++..++.+++++||+|++.++.|.++.. .+...|. +++.+++++ ++.+|++++++++++ +|++|+++.
T Consensus 96 a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~ 163 (363)
T 3ffh_A 96 LIELLTRVLLDTTTNTVMATPTFVQYRQ--------NALIEGA--EVREIPLLQ-DGEHDLEGMLNAIDE-KTTIVWICN 163 (363)
T ss_dssp HHHHHHHHHCSTTCEEEEEESSCHHHHH--------HHHHHTC--EEEEEECCT-TSCCCHHHHHHHCCT-TEEEEEEES
T ss_pred HHHHHHHHHccCCCEEEEcCCChHHHHH--------HHHHcCC--EEEEecCCC-CCCcCHHHHHHhccc-CCCEEEEeC
Confidence 9999999999999999999987765421 2334454 555666663 678999999999987 899999987
Q ss_pred CCCCC--CCChHHHHHHHHHh--CCEEEEehhhhccccccccCCCCCC-----cccEEEeCCCccc--CCCCCceEEeec
Q 013217 178 SAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFKK 246 (447)
Q Consensus 178 ~~~~~--~~~~~~i~~ia~~~--g~~livD~a~~~g~~~~~~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i~~~~ 246 (447)
++||+ ..|.+++.++|+.+ |+++++|++|+.+ .. +....... ..++++.|++|++ +|.|.|++++++
T Consensus 164 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~-~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 241 (363)
T 3ffh_A 164 PNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEY-VT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADK 241 (363)
T ss_dssp SCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGG-CS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECH
T ss_pred CCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhh-cC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCH
Confidence 77775 78999999999888 9999999998633 22 21111111 2347889999987 466669999977
Q ss_pred CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeE
Q 013217 247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLV 325 (447)
Q Consensus 247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~ 325 (447)
++.+.+.....+ .+++....+++..+++.. ..+++..+++.++++.+.+.|++ .|+++..+ ...++
T Consensus 242 ------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~ 308 (363)
T 3ffh_A 242 ------EIIRQLNIVRPP---FNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYPA--NGNFV 308 (363)
T ss_dssp ------HHHHHHHHTCCS---CCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC--CSSEE
T ss_pred ------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECCC--CCeEE
Confidence 787777765432 345666666666666632 34577888899999999999999 89987653 34456
Q ss_pred EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
++++.. +..++.+.|.++||.++.+..++ .++.+|++++ + ++|+++++++|+++
T Consensus 309 ~~~~~~---~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~---~----~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 309 LIDLGI---EAGTIFSYLEKNGYITRSGAALG-----FPTAVRITIG---K----EEDNSAVIALLEKL 362 (363)
T ss_dssp EEECSS---CHHHHHHHHHHTTEECEETTTTT-----CTTEEEEECC---C----HHHHHHHHHHHHHH
T ss_pred EEECCC---CHHHHHHHHHHCCeEEEeCccCC-----CCCeEEEECC---C----HHHHHHHHHHHHHh
Confidence 777753 67889999989999997543222 1568999965 4 89999999999875
No 59
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.95 E-value=2.6e-27 Score=230.18 Aligned_cols=338 Identities=12% Similarity=0.062 Sum_probs=226.0
Q ss_pred CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCC-cccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHHHH
Q 013217 22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPAN 99 (447)
Q Consensus 22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~a~ 99 (447)
++| .++..++|++|+++|...+.+.++.|.... .++.+.++.+.++ .+++.+++++|++.+ ++ .+.+.+||.++
T Consensus 15 ~~n-~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~-~ar~~la~ll~~~~~~ev--if~t~~~T~a~ 90 (377)
T 3e77_A 15 TEN-LYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIIN-NTENLVRELLAVPDNYKV--IFLQGGGCGQF 90 (377)
T ss_dssp CCC-EECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHH-HHHHHHHHHHTCCTTEEE--EEESSHHHHHH
T ss_pred ccc-ccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCCeE--EEEcCchHHHH
Confidence 344 466678899999999998876543222211 1234556666665 688999999999753 32 11124567999
Q ss_pred HHHHHHhcCC--CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 013217 100 FEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 177 (447)
Q Consensus 100 ~~~~~al~~p--gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~ 177 (447)
.+++.+++.+ ||+|++....+.++ .+. ..++..| +.++.++++ +++.+++++++..+++ +|++|.++.
T Consensus 91 n~a~~~l~~~~~Gd~v~~~~~g~~~~---~~~---~~a~~~G--~~~~~~~~~-~~~~~~~~~~~~~i~~-~t~lV~~~h 160 (377)
T 3e77_A 91 SAVPLNLIGLKAGRCADYVVTGAWSA---KAA---EEAKKFG--TINIVHPKL-GSYTKIPDPSTWNLNP-DASYVYYCA 160 (377)
T ss_dssp HHHHHHHGGGSTTCEEEECCCSHHHH---HHH---HHHTTTS--EEEECSCCC-SSSCSCCCGGGCCCCT-TCSCEEEES
T ss_pred HHHHHhccCCCCCCeEEEEECCHHHH---HHH---HHHHHhC--CceEEeccC-CCcCCCCChHHhccCC-CccEEEEeC
Confidence 9999999865 99998776544332 211 1122234 344444454 3455777777766665 899988874
Q ss_pred CCC--CCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCc-----
Q 013217 178 SAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV----- 249 (447)
Q Consensus 178 ~~~--~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~----- 249 (447)
..+ +...|+ +|+++|+++++|++|++|.++.++.. .|++++|.|||+ ||.| |+++++++..
T Consensus 161 ~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~-----~~~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~ 229 (377)
T 3e77_A 161 NETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSK-----FGVIFAGAQKNV-GSAGVTVVIVRDDLLGFALR 229 (377)
T ss_dssp EETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGG-----CSEEEEEGGGTT-SCTTCEEEEEETTSCSCCCT
T ss_pred ccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhh-----cCEEEEeccccc-CCCccEEEEEcHHHHhhccC
Confidence 433 336777 47889999999999999977655433 457899999999 8999 9999998631
Q ss_pred chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC--CCe-e
Q 013217 250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS--DNH-L 324 (447)
Q Consensus 250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~-~ 324 (447)
..+.+.+...........+||+...+.++..|++++.+. |++...++..+.++++.+.|.+. |+.+..... .+. .
T Consensus 230 ~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~i 309 (377)
T 3e77_A 230 ECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMN 309 (377)
T ss_dssp TSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSE
T ss_pred CCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcE
Confidence 001111000001112346899999999999999998877 78999999999999999999985 887533211 122 2
Q ss_pred EEecCCCCCCCH-----HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 325 VLVDLRPMGIDG-----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 325 ~~v~~~~~~~~~-----~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+.+.+. ++++ ..+...|.++||.+.. ++. ..+++|+|+..++| ++|+++++++|+++++.
T Consensus 310 vsf~~~--~~~~~~~~~~~~l~~l~~~Gi~~~~----g~~---~~g~iRiS~~~~~t----~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 310 IPFRIG--NAKGDDALEKRFLDKALELNMLSLK----GHR---SVGGIRASLYNAVT----IEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EEEEES--STTCCHHHHHHHHHHHHHTTEESCB----CCT---TTCSEEEECCTTSC----HHHHHHHHHHHHHHHHH
T ss_pred EEEEcC--CCCCchhHHHHHHHHHHHCCcEEeC----CCC---cCCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence 333333 3322 2455666789999743 332 13469999998888 99999999999988763
No 60
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=3.9e-26 Score=225.04 Aligned_cols=328 Identities=15% Similarity=0.101 Sum_probs=222.8
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .++.+.+++...+... ..+|+. .....++++...+++.+.+|++ ++. |.+++|
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~g~~~lr~~la~~~~~~~g~~~~~~~----v~~~~g 109 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFLQKG-EVKYTD------PRGIYELREGIAKRIGERYKKDISPDQ----VVVTNG 109 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTTC-CCCCCC------TTCCHHHHHHHHHHHHHHHTCCCCGGG----EEEESH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCHHH----EEEecC
Confidence 456888777764 4789999998877542 123332 1223466666666777777863 432 333555
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 013217 96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI 173 (447)
Q Consensus 96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~kli 173 (447)
++|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++ +++.+|+++|++++++ ++++|
T Consensus 110 ~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v 178 (389)
T 1o4s_A 110 AKQALFNAFMALLDPGDEVIVFSPVWVSYIP--------QIILAGG--TVNVVETFMSKNFQPSLEEVEGLLVG-KTKAV 178 (389)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCGGGTTCCCHHHHHHTCCT-TEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecCCccCCCCCHHHHHHhccc-CceEE
Confidence 589999999999999999999998876531 2334454 455555554 2567999999999977 88998
Q ss_pred EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC--CC---CcccEEEeCCCcccC--CCCCce
Q 013217 174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSLR--GPRGGM 241 (447)
Q Consensus 174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~---~~~Di~~~s~~K~l~--Gp~gG~ 241 (447)
+++.++||+ ..+ +++|.++|+++|+++++|++|+.+. ..+...+ .+ ...|++++|+||+++ |.|.|+
T Consensus 179 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 257 (389)
T 1o4s_A 179 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLV-YTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGY 257 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSB-CSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEE
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEE
Confidence 888777764 555 8999999999999999999986443 2221111 01 247899999999983 556799
Q ss_pred EEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217 242 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD 321 (447)
Q Consensus 242 i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 321 (447)
+++++ ++.+.+......+..+. +....++...+++ .+.++..+++.++++.+.+.|.+.|+++..+ ..
T Consensus 258 l~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~ 325 (389)
T 1o4s_A 258 LISSE------KVATAVSKIQSHTTSCI-NTVAQYAALKALE----VDNSYMVQTFKERKNFVVERLKKMGVKFVEP-EG 325 (389)
T ss_dssp EECCH------HHHHHHHHHHHHHTCSC-CHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-SB
T ss_pred EEeCH------HHHHHHHHHhhhcccCC-CHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHhcCCeeecC-Cc
Confidence 99987 67666654332222233 3333333333332 2356778888999999999998888877543 33
Q ss_pred CeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 322 NHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 322 ~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+.+.|+++. .+..++.+.|. ++||.+..+..++ .++.+|++++. + +++++++++.|.+++.
T Consensus 326 ~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~-----~~~~~Ris~~~--~----~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 326 AFYLFFKVR---GDDVKFCERLLEEKKVALVPGSAFL-----KPGFVRLSFAT--S----IERLTEALDRIEDFLN 387 (389)
T ss_dssp SSEEEEECS---SCHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECCS--C----HHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCC---CCHHHHHHHHHHHCCEEEeCchhcC-----CCCeEEEEEeC--C----HHHHHHHHHHHHHHHh
Confidence 556677764 35777888775 8999986542221 13589999762 4 8899999998887764
No 61
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.95 E-value=1.7e-26 Score=228.19 Aligned_cols=333 Identities=16% Similarity=0.177 Sum_probs=228.3
Q ss_pred CeeEecCCC--C-CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217 22 SLELIASEN--F-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 98 (447)
Q Consensus 22 ~i~l~~~~n--~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a 98 (447)
.++|..+++ + .++.+.+++...+.. +..++.+.++..|. ..+.+..++++++++|.+. .+.+++|++|
T Consensus 45 ~idl~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~---~~~~~~l~~~la~~~g~~~-----v~~~~ggt~a 115 (398)
T 3a2b_A 45 VLMFGSNSYLGLTTDTRIIKAAQDALEK-YGTGCAGSRFLNGT---LDIHVELEEKLSAYVGKEA-----AILFSTGFQS 115 (398)
T ss_dssp EEECSCSCTTCGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCC---CHHHHHHHHHHHHHHTCSE-----EEEESSHHHH
T ss_pred EEEeecccccCCCCCHHHHHHHHHHHHH-cCCCCCCcCcccCC---cHHHHHHHHHHHHHhCCCc-----EEEECCHHHH
Confidence 466666654 2 678999999887754 22233322222221 1223344578889999752 2445677799
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEEEE
Q 013217 99 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA 175 (447)
Q Consensus 99 ~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~~klii~ 175 (447)
+..++.++++|||+|++.+|.|+++.. .+...|. +++.++. +|+++|++++++. ++++|++
T Consensus 116 ~~~~~~~~~~~gd~V~~~~p~~~~~~~--------~~~~~g~--~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~~ 179 (398)
T 3a2b_A 116 NLGPLSCLMGRNDYILLDERDHASIID--------GSRLSFS--KVIKYGH------NNMEDLRAKLSRLPEDSAKLICT 179 (398)
T ss_dssp HHHHHHHSSCTTCEEEEETTCCHHHHH--------HHHHSSS--EEEEECT------TCHHHHHHHHHTSCSSSCEEEEE
T ss_pred HHHHHHHHhCCCCEEEECCccCHHHHH--------HHHHcCC--ceEEeCC------CCHHHHHHHHHhhccCCceEEEE
Confidence 999999999999999999998877632 2334454 4445432 6899999999764 6899998
Q ss_pred cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccc-ccC--C-CCCC-cccEEEeCCCcccCCCCCceEEeecCC
Q 013217 176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SVV--A-DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDP 248 (447)
Q Consensus 176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~~~--~-~~~~-~~Di~~~s~~K~l~Gp~gG~i~~~~~~ 248 (447)
++++||+ ..++++|.++|+++|+++++|++|+.|.... +.. . .... .+|++++|+||+++ |.||++++++
T Consensus 180 ~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~-- 256 (398)
T 3a2b_A 180 DGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDA-- 256 (398)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECH--
T ss_pred eCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCH--
Confidence 8777764 7799999999999999999999987664311 110 0 0111 25999999999985 6679999987
Q ss_pred cchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEe
Q 013217 249 VLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 327 (447)
Q Consensus 249 ~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v 327 (447)
++.+.+..... ....++++..+.++...+++... ..++..+++.++++.+.+.|++.|+++..+ ..+++++
T Consensus 257 ----~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~g~~~~~ 328 (398)
T 3a2b_A 257 ----DVIDFLKHNARSVMFSASMTPASVASTLKALEIIQ--NEPEHIEKLWKNTDYAKAQLLDHGFDLGAT--ESPILPI 328 (398)
T ss_dssp ----HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--HCTHHHHHHHHHHHHHHHHHHHTTCCBCSC--CSSEEEE
T ss_pred ----HHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHhcCCCcCCC--CCCEEEE
Confidence 67776654211 11233455555555555676532 235678888999999999999888877643 3466777
Q ss_pred cCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 328 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
.+.. +.+..++.+.|.++||.+..+..++. +...+.+|++++..++ ++|++++++.|+++++.
T Consensus 329 ~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~iRis~~~~~~----~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 329 FIRS-NEKTFWVTKMLQDDGVFVNPVVSPAV--PAEESLIRFSLMATHT----YDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp ECCC-HHHHHHHHHHHHHTTEECEEECTTTS--CGGGCEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred EcCC-HHHHHHHHHHHHHCCcEEEeeCCCCC--CCCCceEEEEEeCCCC----HHHHHHHHHHHHHHHHH
Confidence 7642 33466788888888999876433221 1124689999887666 99999999999998764
No 62
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.95 E-value=6.6e-27 Score=228.15 Aligned_cols=331 Identities=13% Similarity=0.078 Sum_probs=220.4
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCC--CCcccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCC-cH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLP--GKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLS-GS 96 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~--~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~s-Gs 96 (447)
..+.+.+++..+|+.|++++...+.+.+..|.. ...++ +... ..+.+.+++++++++|++.+ ++ +.+++ |+
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~la~~~g~~~~~~~---i~~t~g~t 78 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR-GAVY-EAVHNEAQARLLALLGNPTGYKV---LFIQGGAS 78 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHH-HHHHHHHHHHHHHHTTCCSSEEE---EEESSHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCC-cHHH-HHHHHHHHHHHHHHhCCCCCcEE---EEECCCch
Confidence 356788999999999999998877543221111 00111 2222 33344677899999999753 32 23344 45
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEE
Q 013217 97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIA 175 (447)
Q Consensus 97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii~ 175 (447)
+++..++.++++|||+|++.++.+.++.. . ..+...| .+..++++.+. .+..+|.++++ +++ +||+|++
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--~----~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-~t~~v~~ 148 (362)
T 2c0r_A 79 TQFAMIPMNFLKEGQTANYVMTGSWASKA--L----KEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-NAAYLHL 148 (362)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHH--H----HHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-TEEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEEecCcHhHHH--H----HHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-CcCEEEE
Confidence 99999999999999999987654333210 0 1122345 44555533111 12236776654 555 7999988
Q ss_pred cCCCCCC--C-CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217 176 GASAYPR--D-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 251 (447)
Q Consensus 176 ~~~~~~~--~-~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~ 251 (447)
++++|++ . .|+++| +|+++++|++|+.|.... ++...|++++|+||++ ||.| |++++++
T Consensus 149 ~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~-----~~~~~d~~~~s~~K~~-g~~G~G~l~~~~----- 211 (362)
T 2c0r_A 149 TSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPF-----DLNQFGLVYAGAQKNL-GPSGVTVVIVRE----- 211 (362)
T ss_dssp ESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCC-----CGGGCSEEEEETTTTT-CCSSCEEEEEEG-----
T ss_pred eCCcCccceeccccccc------CCCEEEEEChhhccCCcc-----chhHCcEEEEeccccc-cCcCcEEEEEcH-----
Confidence 8666664 2 467666 899999999998775432 2333599999999998 6888 9999988
Q ss_pred hhHHHHhhhcc-----------CCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCC-c-Eeee
Q 013217 252 VELESAINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-KLVS 317 (447)
Q Consensus 252 ~~~~~~i~~~~-----------~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~ 317 (447)
++.+.+.... .....++++...++++..|++.+... ++++..++..++++++.+.|++.| + ++..
T Consensus 212 -~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 290 (362)
T 2c0r_A 212 -DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCV 290 (362)
T ss_dssp -GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESS
T ss_pred -HHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 4444333210 11224678888888888899876544 578889999999999999999887 6 7643
Q ss_pred CC--CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 318 GG--SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 318 ~~--~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
+. .....+++.+.. +.+..++.+.|.++||.+. |+... .+++|+|+...++ ++|+++++++|++++
T Consensus 291 ~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gi~~~----~g~~~---~~~iRis~~~~~~----~e~i~~l~~~l~~~~ 358 (362)
T 2c0r_A 291 DVDSRSDMNITFRLAS-EELEKEFVKASEQEGFVGL----KGHRS---VGGLRASIYNAVP----YESCEALVQFMEHFK 358 (362)
T ss_dssp CGGGBCSSEEEEECSC-HHHHHHHHHHHHHTTEESC----BCCTT---TCSEEEECCTTSC----HHHHHHHHHHHHHHH
T ss_pred ChHHcCCcEEEEEcCC-cchHHHHHHHHHHCCCeec----cCCCC---CCEEEEECCCCCC----HHHHHHHHHHHHHHH
Confidence 21 122344555532 3356778888999999763 33221 3479999987777 999999999998876
Q ss_pred H
Q 013217 396 E 396 (447)
Q Consensus 396 ~ 396 (447)
+
T Consensus 359 ~ 359 (362)
T 2c0r_A 359 R 359 (362)
T ss_dssp H
T ss_pred H
Confidence 5
No 63
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.95 E-value=7.1e-27 Score=226.33 Aligned_cols=330 Identities=11% Similarity=0.033 Sum_probs=224.7
Q ss_pred hcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCc---ccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCc
Q 013217 20 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR---YYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~---~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sG 95 (447)
++.+++.|+...+|++|+++|...+.+.+ +++.+- .+.+.++.+.++ .+++.+++++|++.+ ++ .+.+.+|
T Consensus 4 ~~~~~f~pgpt~~~~~V~~a~~~~~~~~~--~~~~s~~~~~hr~~~~~~~~~-~~r~~la~ll~~~~~~~v--~f~t~~~ 78 (361)
T 3m5u_A 4 MRKINFSAGPSTLPLEILEQAQKELCDYQ--GRGYSIMEISHRTKVFEEVHF-GAQEKAKKLYELNDDYEV--LFLQGGA 78 (361)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSGG--GSSSCGGGSCSSSHHHHHHHH-HHHHHHHHHHTCCTTEEE--EEESSHH
T ss_pred cceEeecCCCCCCcHHHHHHHHHHHHhcc--cCCceeeccCCCCHHHHHHHH-HHHHHHHHHhCCCCCceE--EEEcCcH
Confidence 35688999999999999999999887644 333331 133556666665 688999999999743 32 1223556
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCC-CCHHHHHHHhhhhCCcEEE
Q 013217 96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-VDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-id~~~l~~~~~~~~~klii 174 (447)
|+++.+++.+++ +||+++.....+ ++|.+. ..+...|. ++..+++++++.. +++++ + +++ +|++|.
T Consensus 79 T~a~n~~~~~~~-~~~~~~~i~~~~---~~~~~~---~~a~~~G~--~v~~~~~~~~g~~~~~~~~-~--l~~-~t~lv~ 145 (361)
T 3m5u_A 79 SLQFAMIPMNLA-LNGVCEYANTGV---WTKKAI---KEAQILGV--NVKTVASSEESNFDHIPRV-E--FSD-NADYAY 145 (361)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEECSH---HHHHHH---HHHHHTTC--CEEEEEECTTTTSCSCCCC-C--CCT-TSSEEE
T ss_pred HHHHHHHHHhcC-CCCeEEEEeCCH---HHHHHH---HHHHHcCC--ceEEEecccCcCCCcCChh-h--cCC-CCCEEE
Confidence 699999999998 899764333222 222211 01122343 3444445533211 56666 4 666 899988
Q ss_pred EcCCCC-CC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217 175 AGASAY-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 251 (447)
Q Consensus 175 ~~~~~~-~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~ 251 (447)
+++..+ .+ ..|. +++ +|+++++|++|++|.++.++. ..|++++|+|||+ ||.| |++++++
T Consensus 146 ~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~-----~~d~~~~s~~K~~-gp~G~g~l~~~~----- 208 (361)
T 3m5u_A 146 ICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS-----NIALFYGGVQKNA-GISGLSCIFIRK----- 208 (361)
T ss_dssp EESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT-----TEEEEEEETTTTS-SCTTCEEEEEEH-----
T ss_pred EeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc-----cCCEEEEechhcc-CCCccEEEEEcH-----
Confidence 874433 23 4441 344 499999999999997755443 4799999999999 7999 9999998
Q ss_pred hhHHHHhhhc------------cCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCC-c-Eee
Q 013217 252 VELESAINNA------------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-KLV 316 (447)
Q Consensus 252 ~~~~~~i~~~------------~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~ 316 (447)
++.+++.+. ......+||+...+.++..|++++.+. |++...++..+.++++.+.|.+.+ + .+.
T Consensus 209 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~ 287 (361)
T 3m5u_A 209 -DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGH 287 (361)
T ss_dssp -HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEES
T ss_pred -HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeecc
Confidence 454443320 012235899999999999999999888 789999999999999999999866 5 554
Q ss_pred eCCC-C-CeeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 317 SGGS-D-NHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 317 ~~~~-~-~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
.+.. . .+.+.+.+.. .+++ .++...|.++||.+..+ +. ..+++|+|++.++| ++|+++++++|++
T Consensus 288 ~~~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g----~~---~~g~iRiS~~~~~t----~edId~l~~al~~ 355 (361)
T 3m5u_A 288 ADKKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKG----HR---ILGGIRASIYNALN----LDQVKTLCEFMKE 355 (361)
T ss_dssp SCGGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBC----CT---TTCSEEEECCTTSC----HHHHHHHHHHHHH
T ss_pred CCHHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecC----CC---ccCeEEEEccCCCC----HHHHHHHHHHHHH
Confidence 3211 1 2233344432 2334 46778889999998542 21 12469999998888 9999999999998
Q ss_pred HHHH
Q 013217 394 GVEI 397 (447)
Q Consensus 394 ~l~~ 397 (447)
+.+.
T Consensus 356 ~~~~ 359 (361)
T 3m5u_A 356 FQGK 359 (361)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 64
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=6.8e-26 Score=223.10 Aligned_cols=323 Identities=13% Similarity=0.092 Sum_probs=216.7
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-cCCC
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 110 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~~pg 110 (447)
+++.+++++...+.... .+ | ...+...+++ +.+++++|.+. .|.++||++|+..++.++ ++||
T Consensus 15 ~~~~~~~a~~~~l~~~~-~~-----~-~~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~al~~~l~~l~~~~g 78 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQ-WW-----R-MGGDEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG 78 (388)
T ss_dssp CCHHHHHHHHHHHHTSC-CB-----T-TTCSHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHcCC-ee-----e-cCCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCc
Confidence 45899999988876521 11 1 1223344554 67889999863 355689999999999999 8999
Q ss_pred CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHH
Q 013217 111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR 190 (447)
Q Consensus 111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~ 190 (447)
|+|+++++.|.+... .+...|. +++.++++++++.+|+++|++++++ ++++|+.+. .++...|+++|.
T Consensus 79 d~Vi~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n-~tG~~~~l~~i~ 146 (388)
T 1b9h_A 79 TEVIVPAFTFISSSQ--------AAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIMPVH-MAGLMADMDALA 146 (388)
T ss_dssp CEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHHHHH
T ss_pred CEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEeC-CccCcCCHHHHH
Confidence 999999998877632 2334454 5666667765688999999999976 788877221 122378999999
Q ss_pred HHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhH--HHHhhhccCC----
Q 013217 191 QIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL--ESAINNAVFP---- 264 (447)
Q Consensus 191 ~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~--~~~i~~~~~~---- 264 (447)
++|+++|+++++|++|+.|..+.+.....++.+++.++|.||+++|++||+++++++ .+ .+.+......
T Consensus 147 ~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~-----~~~~~~~~~~~~~~~~~~ 221 (388)
T 1b9h_A 147 KISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG-----ETEKYETAFLRHSCGRPR 221 (388)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT-----CHHHHHHHHHHTBTTCCT
T ss_pred HHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCH-----HHHHHHHHHHHHhCCCCc
Confidence 999999999999999987776533211111224566666779998899999999874 35 4444321110
Q ss_pred -------CCCCC---CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCC-----CCCeeEEec
Q 013217 265 -------GLQGG---PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG-----SDNHLVLVD 328 (447)
Q Consensus 265 -------~~~g~---p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-----~~~~~~~v~ 328 (447)
...|+ ++....+++..++ ..+++..+++.++++++.+.|.+. |+.+.... ...+++++.
T Consensus 222 ~~~~~~~~~~g~~~~~~~~~~a~~~~~~-----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (388)
T 1b9h_A 222 DDRRYFHKIAGSNMRLNEFSASVLRAQL-----ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFR 296 (388)
T ss_dssp TCSSCCCCSCCCBCBCBHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEE
T ss_pred cCccceeecccccCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEE
Confidence 01122 3333332222221 235667788888999999999884 88776421 224566777
Q ss_pred CCCCC-CCHHHHHHHHhhcCeEEccCCCCCCCCC------------------C------CCCeEEEecCccc-cCCCCHH
Q 013217 329 LRPMG-IDGARVEKILDMASITLNKNSVPGDKSA------------------L------VPGGIRIGSPAMT-TRGFSEK 382 (447)
Q Consensus 329 ~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~------------------~------~~~~iRig~~~~~-~~g~~~~ 382 (447)
+.... .+..++.+.|.++||.++.++.|.+..+ + ..+.||++++..+ | ++
T Consensus 297 ~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t----~e 372 (388)
T 1b9h_A 297 IPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAG----EP 372 (388)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSC----HH
T ss_pred eCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCC----HH
Confidence 75321 2456788889889999986543321100 0 0135999988777 7 99
Q ss_pred HHHHHHHHHHHHHH
Q 013217 383 EFVAIADFIHEGVE 396 (447)
Q Consensus 383 di~~l~~~i~~~l~ 396 (447)
||+++++.|+++++
T Consensus 373 di~~~~~~l~~~~~ 386 (388)
T 1b9h_A 373 ELHATAEIIADAVA 386 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998775
No 65
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.95 E-value=6.1e-28 Score=235.92 Aligned_cols=338 Identities=12% Similarity=0.039 Sum_probs=215.5
Q ss_pred CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCC---cccCchhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHH
Q 013217 22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK---RYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSP 97 (447)
Q Consensus 22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~---~~~~g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~ 97 (447)
...+.|+...+|++|+++|..++.+.+ |+|.+ -++.+.++.+.++ .+++.+++++|++.+ ++ .+.+.+||+
T Consensus 28 ~yl~~agpt~~p~~V~~a~~~~~~~~~--~n~~s~~~~~h~~~~~~~~~~-~ar~~la~ll~~~~~~ev--if~t~~~T~ 102 (386)
T 3qm2_A 28 VFNFSSGPAMLPAEVLKLAQQELCDWH--GLGTSVMEISHRGKEFIQVAE-EAEQDFRDLLNIPSNYKV--LFCHGGGRG 102 (386)
T ss_dssp CEECCSSSCCCCHHHHHHHTCC-------------------------CCH-HHHHHHHHHHTCCTTEEE--EEEESCTTH
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhcc--ccCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCceE--EEEcCCchH
Confidence 456789999999999999998887644 33332 1123444445554 678999999999642 33 122357789
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCC-CCHHHHHHHhhhhCCcEEEE
Q 013217 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGL-VDYDMLEKTAILFRPKLIIA 175 (447)
Q Consensus 98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-id~~~l~~~~~~~~~klii~ 175 (447)
++.+++.+++++||+|++....+.++ .+.. .+...| .+..++ ++ ++.+. +|+++++.++++ +|++|.+
T Consensus 103 a~n~ai~~l~~~gd~v~~~~~~~~~~---~~~~---~a~~~G-~v~~v~--~~~~~~G~~~~~~~~~~~l~~-~t~lV~~ 172 (386)
T 3qm2_A 103 QFAGVPLNLLGDKTTADYVDAGYWAA---SAIK---EAKKYC-APQIID--AKITVDGKRAVKPMREWQLSD-NAAYLHY 172 (386)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSHHHH---HHHH---HHTTTS-EEEEEE--CEEEETTEEEECCGGGCCCCT-TCSCEEE
T ss_pred HHHHHHHhccCCCCeEEEEeCCHHHH---HHHH---HHHHhC-CeEEEe--cCcccCCCCCCchHHHhhcCC-CCcEEEE
Confidence 99999999999999988665444333 2111 112334 344444 43 11343 788888877776 8999888
Q ss_pred cCCCC--CCC-CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCc--
Q 013217 176 GASAY--PRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV-- 249 (447)
Q Consensus 176 ~~~~~--~~~-~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~-- 249 (447)
+...+ +.. .|+++|. +|+++++|++|++|.++.++.. .|++++|+|||+ ||.| |+++++++..
T Consensus 173 ~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~-----~~~~~~s~hK~l-GP~G~g~l~v~~~~~~~ 241 (386)
T 3qm2_A 173 CPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSR-----YGVIYAGAQKNI-GPAGLTLVIVREDLLGK 241 (386)
T ss_dssp CSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGG-----CSEEEEETTTTT-CCTTEEEEEEEGGGCSC
T ss_pred ECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCccc-----cCEEEEeccccc-CCCccEEEEECHHHHhh
Confidence 74433 333 6888875 7999999999999977655433 357889999999 7999 9999998521
Q ss_pred ---chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCCcEee-eCC-CC-C
Q 013217 250 ---LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLV-SGG-SD-N 322 (447)
Q Consensus 250 ---~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~-~~-~ 322 (447)
..+.+.+.-.........|||+...+.++..|++.+.+. ++++..++..+.++++.+.|.+.|+... ... .. .
T Consensus 242 ~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~ 321 (386)
T 3qm2_A 242 AHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSR 321 (386)
T ss_dssp CCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCS
T ss_pred hcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCc
Confidence 000010000000112235789999999999999988877 7888899999999999999988776222 111 11 1
Q ss_pred eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
..+.+.+...+++ ..+...|.++||.+..+ +.. .+++|+|+..++| ++|+++++++|+++.+.
T Consensus 322 ~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g----~~~---~~~iRiS~~~~~t----~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 322 MNVPFQLADNTLD-KVFLEESFAAGLHALKG----HRV---VGGMRASIYNAMP----IEGVKALTDFMIDFERR 384 (386)
T ss_dssp SEEEEEESSGGGH-HHHHHHHHHTTEECCBC----CTT---TCSEEEECCTTSC----HHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccc-HHHHHHHHHCCCEEeCC----CCC---cCeEEEEcCCCCC----HHHHHHHHHHHHHHHHh
Confidence 2334444432344 56666788999997542 211 2469999988888 99999999999987653
No 66
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-26 Score=235.32 Aligned_cols=328 Identities=14% Similarity=0.112 Sum_probs=228.3
Q ss_pred CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHhcC---
Q 013217 33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK--- 108 (447)
Q Consensus 33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al~~--- 108 (447)
++.+.+++.+.+.. +...++.. +...+...++|+.+++++++++|++ .... .+.+++|++|+..++.++.+
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~~~~~~~la~~~g~~~~~~~--~~~~~ggt~a~~~a~~a~~~~~~ 151 (497)
T 3mc6_A 77 GDDLIHLQTIAYEK-YCVANQLH--PDVFPAVRKMESEVVSMVLRMFNAPSDTGC--GTTTSGGTESLLLACLSAKMYAL 151 (497)
T ss_dssp CHHHHHHHHHHHHH-TSSCBTTC--TTTCHHHHHHHHHHHHHHHHHTTCCTTTCC--EEEESSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH-HhhcCCCC--cccChHHHHHHHHHHHHHHHHhCCCCCCCe--EEEcCcHHHHHHHHHHHHHHHHH
Confidence 35666666555443 11111111 2233446678888889999999998 2222 24446667999999988864
Q ss_pred --CC---CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-
Q 013217 109 --PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR- 182 (447)
Q Consensus 109 --pg---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~- 182 (447)
+| |+|++..+.|.++. +.+...|. +++.++++++++.+|+++|++++++ +|++|+++.++|++
T Consensus 152 ~~~g~~~~~Vi~~~~~h~~~~--------~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG 220 (497)
T 3mc6_A 152 HHRGITEPEIIAPVTAHAGFD--------KAAYYFGM--KLRHVELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPHG 220 (497)
T ss_dssp HHSCCSSCEEEEETTSCHHHH--------HHHHHSCC--EEEEECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTTC
T ss_pred hcCCCCCceEEEeCCccHHHH--------HHHHHcCC--eEEEEecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCCC
Confidence 56 89999998876643 23445565 4555556644688999999999987 89999998777654
Q ss_pred -CCChHHHHHHHHHhCCEEEEehhhhccccc----cccCCC-C----CCcccEEEeCCCcccCCCCC-ceEEeecCCcch
Q 013217 183 -DFDYPRMRQIADAVGALLMMDMAHISGLVA----ASVVAD-P----FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 251 (447)
Q Consensus 183 -~~~~~~i~~ia~~~g~~livD~a~~~g~~~----~~~~~~-~----~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~ 251 (447)
..|+++|+++|+++|+++++|++|+.+... .+.... + ..++|++++|+||++.||.+ |++++++
T Consensus 221 ~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~----- 295 (497)
T 3mc6_A 221 IADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRN----- 295 (497)
T ss_dssp CCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSS-----
T ss_pred cCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecC-----
Confidence 779999999999999999999998654332 111101 1 12689999999999877666 9999887
Q ss_pred hhHHHHhhhccCC----------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeCC
Q 013217 252 VELESAINNAVFP----------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGG 319 (447)
Q Consensus 252 ~~~~~~i~~~~~~----------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~ 319 (447)
+..........+ ...|+.....+++++++++.+...+++++.+++.++++++++.|.+. |++++.+.
T Consensus 296 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~ 374 (497)
T 3mc6_A 296 -SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP 374 (497)
T ss_dssp -HHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC
T ss_pred -HHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 333332211111 12334445557778888887777778899999999999999999984 89887543
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
. ..++.+. ..+.+..++.+.|.++||.++.... +.++|++++ .++ ++|++++++.|++++...
T Consensus 375 ~-~~~v~~~--~~~~~~~~l~~~L~~~Gi~v~~~~~--------~~~~ri~~~-~~t----~e~i~~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 375 R-YSVISFS--SKTLNIHELSDRLSKKGWHFNALQK--------PVALHMAFT-RLS----AHVVDEICDILRTTVQEL 437 (497)
T ss_dssp C-SSEEEEE--CTTTTHHHHHHHHHTTTCBCEECCS--------SCCEEEECC-TTT----TCTHHHHHHHHHHHHHHH
T ss_pred C-eeEEEEe--CCCCCHHHHHHHHHhCCEEEecCCC--------CCeEEEEEe-CCC----HHHHHHHHHHHHHHHHHH
Confidence 2 2333343 3356788999999999998864321 236899877 444 899999999999998765
No 67
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.95 E-value=2.5e-26 Score=227.51 Aligned_cols=337 Identities=14% Similarity=0.061 Sum_probs=225.4
Q ss_pred CeeEec-CCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC---CccceeeecCCc
Q 013217 22 SLELIA-SEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE---NKWGVNVQPLSG 95 (447)
Q Consensus 22 ~i~l~~-~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~---~~~~~~v~~~sG 95 (447)
.|+|.. +.+ ..++.|++++...+.+....+|+... + ...+.+.+.+++++++|.+. +.+ +.+++|
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~--g----~~~l~~~l~~~l~~~~g~~~~~~~~i---~~~~g~ 111 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYR--G----DLGIRDLLAPRLAAFTGAPVDARDGL---IITPGT 111 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTT--C----CHHHHHHHHHHHHHHHTSCCCTTTSE---EEESHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCC--C----CHHHHHHHHHHHHHHhCCCCCCCCcE---EEeCCc
Confidence 466643 223 35789999998877642111232221 1 23444455678889999852 322 223444
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-----CCCCCCCHHHHHHHhhhhCC
Q 013217 96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-----ESTGLVDYDMLEKTAILFRP 170 (447)
Q Consensus 96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~id~~~l~~~~~~~~~ 170 (447)
++|+..++.+++++||+|++..+.|.++.. .+...|. +++.++++ ++++.+|++++++++++ ++
T Consensus 112 ~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~ 180 (407)
T 3nra_A 112 QGALFLAVAATVARGDKVAIVQPDYFANRK--------LVEFFEG--EMVPVQLDYVSADETRAGLDLTGLEEAFKA-GA 180 (407)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCcccchHH--------HHHHcCC--EEEEeecccccccCcCCCcCHHHHHHHHhh-CC
Confidence 599999999999999999999998876531 2334554 44455552 25678999999999987 89
Q ss_pred cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-------CcccEEEeCCCcccC--C
Q 013217 171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSLR--G 236 (447)
Q Consensus 171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-------~~~Di~~~s~~K~l~--G 236 (447)
++|+++.++||+ ..+ +++|.++|++||+++++|++|..+. ..+....++ ...++++.|+||+++ |
T Consensus 181 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~-~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 259 (407)
T 3nra_A 181 RVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG 259 (407)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSB-CTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGG
T ss_pred cEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCChhhcCcccCCcEEEEeCcccccCCCe
Confidence 999888777775 666 8999999999999999999986433 222111111 135689999999974 6
Q ss_pred CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217 237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL 315 (447)
Q Consensus 237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 315 (447)
.|.|++++++ ++.+.+.........+ ++....+++..+++. ....+++..+++.++++.+.+.|++. |+.+
T Consensus 260 ~r~G~~~~~~------~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 331 (407)
T 3nra_A 260 YRLGVAFGSR------AIIARMEKLQAIVSLR-AAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFA 331 (407)
T ss_dssp GCCEEEEECH------HHHHHHHHHHHHHTSS-SCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBC
T ss_pred eeEEEEEcCH------HHHHHHHHHHhhhccC-CChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 6779999877 6776665432222222 233333333333321 12345777888899999999999885 7877
Q ss_pred eeCCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 316 VSGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 316 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
..+ ...+++|+++...+.+..++.+.|. ++||.+..+..++ +...+.+|++++. + +++++++++.|.++
T Consensus 332 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRis~~~--~----~~~i~~~~~~l~~~ 401 (407)
T 3nra_A 332 RTP-QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS---PHTADSVRLNFSQ--D----HEAAVAAARRIVTL 401 (407)
T ss_dssp CCC-SBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC---TTCTTBEEEECCS--C----HHHHHHHHHHHHHH
T ss_pred ccC-CeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC---CCCCCEEEEEeCC--C----HHHHHHHHHHHHHH
Confidence 543 3345667777654567788888774 5799997643332 2235689999763 4 89999999999988
Q ss_pred HHH
Q 013217 395 VEI 397 (447)
Q Consensus 395 l~~ 397 (447)
++.
T Consensus 402 ~~~ 404 (407)
T 3nra_A 402 VER 404 (407)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 68
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.95 E-value=8.2e-27 Score=228.31 Aligned_cols=326 Identities=14% Similarity=0.080 Sum_probs=214.4
Q ss_pred CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-
Q 013217 28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 106 (447)
Q Consensus 28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al- 106 (447)
+.+++|+.+++++.+.+.+.+ .+| .+...++ ++.+++++|.+. .+.+++|++|+..++.++
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~--~~~-------~~~~~~l----~~~la~~~~~~~-----v~~~~ggt~al~~~~~~~~ 68 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQ--LTQ-------GKRSLLF----EEALCEFLGVKH-----ALVFNSATSALLTLYRNFS 68 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC--CSS-------SHHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHcCc--ccC-------ChHHHHH----HHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhc
Confidence 567889999999998876532 122 1223344 468889999872 244567779999999999
Q ss_pred --cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCC
Q 013217 107 --LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184 (447)
Q Consensus 107 --~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~ 184 (447)
++|||+|+++++.|.++.. .+...|. +++.++++++ +.+|++++++++++ ++++|+++.+ ++...
T Consensus 69 ~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~-~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~~ 135 (375)
T 2fnu_A 69 EFSADRNEIITTPISFVATAN--------MLLESGY--TPVFAGIKND-GNIDELALEKLINE-RTKAIVSVDY-AGKSV 135 (375)
T ss_dssp CCCTTSCEEEECSSSCTHHHH--------HHHHTTC--EEEECCBCTT-SSBCGGGSGGGCCT-TEEEEEEECG-GGCCC
T ss_pred ccCCCCCEEEECCCccHhHHH--------HHHHCCC--EEEEeccCCC-CCCCHHHHHhhcCc-CceEEEEeCC-cCCcc
Confidence 8999999999998877542 2233443 6666667644 47999999998876 7898777755 44578
Q ss_pred ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEe-ecCCcchhhHHHHhhhccC
Q 013217 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF-KKDPVLGVELESAINNAVF 263 (447)
Q Consensus 185 ~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~-~~~~~~~~~~~~~i~~~~~ 263 (447)
|+++|.++|+++|+++++|++|+.|....+.....++.+++.++|.||++ |+..|++++ +++ ++.+++.....
T Consensus 136 ~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~-~~g~g~~~~~~~~-----~~~~~~~~~~~ 209 (375)
T 2fnu_A 136 EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPI-TTAEGGAVVTNDS-----ELHEKMKLFRS 209 (375)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSS-CCSSCEEEEESCH-----HHHHHHHHHTB
T ss_pred CHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCc-cccCceEEEeCCH-----HHHHHHHHHHh
Confidence 99999999999999999999998775543211111112444455666998 552377766 432 56665554321
Q ss_pred CCC------------CCCC-cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC--C--CCCeeE
Q 013217 264 PGL------------QGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--G--SDNHLV 325 (447)
Q Consensus 264 ~~~------------~g~p-~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~--~~~~~~ 325 (447)
.+. .+.+ ....+++ +.++.. ..++++..++..++++++.+.|.+. |+++..+ + ...+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2fnu_A 210 HGMLKKDFFEGEVKSIGHNFRLNEIQS-ALGLSQ--LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLY 286 (375)
T ss_dssp TTEEESSSSCEEESSCCCBCCCCHHHH-HHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCE
T ss_pred cCCccccccccccccccccCCCCHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEE
Confidence 111 1111 1112211 112222 2356778889999999999999884 7877653 1 122444
Q ss_pred EecCCCCCC-CHHHHHHHHhhcCeEEccCCCCCCCC-C---------C------CCCeEEEecCccccCCCCHHHHHHHH
Q 013217 326 LVDLRPMGI-DGARVEKILDMASITLNKNSVPGDKS-A---------L------VPGGIRIGSPAMTTRGFSEKEFVAIA 388 (447)
Q Consensus 326 ~v~~~~~~~-~~~~~~~~L~~~gI~v~~~~~p~~~~-~---------~------~~~~iRig~~~~~~~g~~~~di~~l~ 388 (447)
++.+...+. +..++.+.|.++||.++..+.|++.. . . ..+.+|++++..++ ++|+++++
T Consensus 287 ~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t----~~~i~~~~ 362 (375)
T 2fnu_A 287 PILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN----LESVQNIA 362 (375)
T ss_dssp EEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC----HHHHHHHH
T ss_pred EEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC----HHHHHHHH
Confidence 666643333 56788899999999998433332210 0 0 01579999887777 99999999
Q ss_pred HHHHHHHHH
Q 013217 389 DFIHEGVEI 397 (447)
Q Consensus 389 ~~i~~~l~~ 397 (447)
++|+++++.
T Consensus 363 ~~l~~~~~~ 371 (375)
T 2fnu_A 363 HSVLKTFES 371 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 69
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.95 E-value=4e-26 Score=225.52 Aligned_cols=339 Identities=14% Similarity=0.132 Sum_probs=229.8
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sG 95 (447)
+..++|..+++. .++.+.+++.+.+.+. ..+|+.. ..++++...+++++.+| ++++. |.+++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~~----v~~t~g 97 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDET-VLGYTGP--------TEEYKKTVKKWMKDRHQWDIQTDW----IINTAG 97 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHC-CCSSBCC--------CHHHHHHHHHHHHHHHCCCCCGGG----EEEESS
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcC-CCCCCCC--------cHHHHHHHHHHHHHHhCCCCChhh----EEEcCC
Confidence 356788777763 4789999998877542 1233221 34566555667777778 44442 333555
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhCCcE
Q 013217 96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKL 172 (447)
Q Consensus 96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~~kl 172 (447)
++|+..++.++++|||+|++..|.|.++.. .+...|. +++.++++++ ++.+|+++|+++++..+|++
T Consensus 98 ~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~ 167 (399)
T 1c7n_A 98 VVPAVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQER--KIIECELLEKDGYYTIDFQKLEKLSKDKNNKA 167 (399)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTC--EEEECCCEEETTEEECCHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEecccccCCCCEEEcHHHHHHHhccCCCcE
Confidence 589999999999999999999988876532 2233454 5555555422 24699999999997448899
Q ss_pred EEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-------cccEEEeCCCccc--CCCC
Q 013217 173 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPR 238 (447)
Q Consensus 173 ii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-------~~Di~~~s~~K~l--~Gp~ 238 (447)
|+++.++||+ ..+ +++|.++|+++|+++|+|++|... ...+....++. ..++++.|+||++ +|.|
T Consensus 168 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 246 (399)
T 1c7n_A 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDL-IMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMG 246 (399)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTC-BCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGC
T ss_pred EEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCcccHHHcCccccCcEEEEEeChhhccccchh
Confidence 9988778875 666 899999999999999999998543 32221111221 2358899999987 4667
Q ss_pred CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-C-CcEee
Q 013217 239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLV 316 (447)
Q Consensus 239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~ 316 (447)
.|+++++++ ++.+.+.....+...++++....+++..+++.. ...+++..+++.++++.+.+.|++ . |+++.
T Consensus 247 ~G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 320 (399)
T 1c7n_A 247 MSNIIIKNP-----DIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (399)
T ss_dssp CEEEECCCH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred eEEEEECCH-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 799999752 577766554333323455666555555566643 234567778888999999999987 4 78765
Q ss_pred eCCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 317 SGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 317 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
.+ ..+.+.|+++...+.+..++.+.|. ++||.+..+...+ +..++.+|++++. . +++++++++.|.+++
T Consensus 321 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRis~~~--~----~~~l~~~l~~l~~~l 390 (399)
T 1c7n_A 321 LI-EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFG---DGGIGFERINLAA--P----SSVIQESLERLNKAL 390 (399)
T ss_dssp CC-SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGC---GGGTTEEEEECCS--C----HHHHHHHHHHHHHHH
T ss_pred cC-CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccC---CCCCCeEEEEecc--C----HHHHHHHHHHHHHHH
Confidence 43 3455567777543456778888885 7899986542221 1124689999763 2 688999999998887
Q ss_pred HHH
Q 013217 396 EIT 398 (447)
Q Consensus 396 ~~~ 398 (447)
+..
T Consensus 391 ~~~ 393 (399)
T 1c7n_A 391 KDL 393 (399)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 70
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.95 E-value=8.3e-26 Score=226.01 Aligned_cols=339 Identities=15% Similarity=0.132 Sum_probs=231.7
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .++.+++++...+.+....+|+.. ....++++...+++.+.+|.+ ++. |.+++|
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~~la~~~~~~~g~~~~~~~----i~~t~g 113 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNL------DGLPELKQEASRFAKLFVNIDIPARA----CVPTVG 113 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGGG----EEEESH
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCC------CChHHHHHHHHHHHHHhhCCCCCccc----EEEeCC
Confidence 467888888775 479999999888764322344432 112355555556666666654 332 333555
Q ss_pred H-HHHHHHHHHhc--CCCC--EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 013217 96 S-PANFEVYTAIL--KPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP 170 (447)
Q Consensus 96 s-~a~~~~~~al~--~pgd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~ 170 (447)
+ +++..++.+++ +||| +|++..+.|.++.. .+...|. +++.++++++++.+|+++|+++++..++
T Consensus 114 ~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 183 (437)
T 3g0t_A 114 SMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKL--------QCRILGQ--KFESFDLFEYRGEKLREKLESYLQTGQF 183 (437)
T ss_dssp HHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHH--------HHHHHTC--CCEEEEGGGGCTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHH--------HHHHcCC--EEEEEeecCCCCccCHHHHHHHHhcCCc
Confidence 5 89999999998 9999 99999988766531 2334454 4444445545667999999999944489
Q ss_pred cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC--------CC---CcccEEEeCCCccc
Q 013217 171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--------PF---KYCDVVTTTTHKSL 234 (447)
Q Consensus 171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--------~~---~~~Di~~~s~~K~l 234 (447)
++|+++.++||+ ..+ +++|+++|+++|+++++|++|+.+ ...+..+. .+ ...+++++|+||++
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 262 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGM-DFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF 262 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-CTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhc-ccCCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence 999888777775 555 678899999999999999998533 22221111 11 13568999999986
Q ss_pred --CCCCCceEEeecCCcchhhHHH-H-----------------hhhccCCCCCCCCcHHHHHHHHHHHHHhcC--hhHHH
Q 013217 235 --RGPRGGMIFFKKDPVLGVELES-A-----------------INNAVFPGLQGGPHNHTIGGLAVCLKHAQS--PEFKV 292 (447)
Q Consensus 235 --~Gp~gG~i~~~~~~~~~~~~~~-~-----------------i~~~~~~~~~g~p~~~~~aal~~al~~~~~--~~~~~ 292 (447)
+|.|.|++++++ ++.+ . +...... ...+++....+++..+++.... ..+++
T Consensus 263 ~~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 335 (437)
T 3g0t_A 263 SYAGQRIGVLMISG------KLYEREYPDLEESFGRLRFGEALSSSALYA-LSSGATHSAQWGMAAMLKACNDGEYNFRD 335 (437)
T ss_dssp SCGGGCCEEEEECH------HHHHCBCGGGHHHHSCSBHHHHHHTTHHHH-HHSSSCHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred CCccceeEEEEECH------HHhhhhhhcccccccccchhHHHHHHHHhh-hcCCCCHHHHHHHHHHHhCcHhHHHHHHH
Confidence 466779999987 6666 5 4332111 1234455555666666665431 11677
Q ss_pred HHHHHHHHHHHHHHHHHHCCcEee------eCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCe
Q 013217 293 YQNKVVSNCRALASRLVELGYKLV------SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGG 366 (447)
Q Consensus 293 ~~~~~~~~~~~l~~~L~~~g~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~ 366 (447)
..+++.++++.+.+.|.+.|+++. .+....+++|+++. +.+..++.+.|.++||.+.....++. ..++.
T Consensus 336 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gi~v~~~~~~~~---~~~~~ 410 (437)
T 3g0t_A 336 SVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK--GMDSSKLIEKFVRYGMCAITLKTTGS---KRNEA 410 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET--TCCHHHHHHHHHHTTEECEESTTTTC---CCTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC--CCCHHHHHHHHHHcCeEEeeccccCC---CCCCE
Confidence 889999999999999998898887 23134566777775 56788999999889999975432221 12367
Q ss_pred EEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 367 IRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 367 iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+|++++.. + ++|++++++.|+++++
T Consensus 411 iRis~~~~-~----~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 411 MRICTSLL-P----ESQFPDLEKRLQMLNA 435 (437)
T ss_dssp EEEECSSS-C----GGGHHHHHHHHHHHHH
T ss_pred EEEEEecC-C----HHHHHHHHHHHHHHHh
Confidence 99998744 4 8999999999988765
No 71
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.95 E-value=4.9e-26 Score=223.17 Aligned_cols=334 Identities=15% Similarity=0.118 Sum_probs=223.4
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .++.+.+++.+.+.+....+| +......++++...+++.+.+|.+ ++. +|.+++|
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y------~~~~~~~~l~~~ia~~~~~~~g~~~~~~~---~v~~~~g 95 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGY------CLKSCTLPFLEEAARWYEGRYGVGLDPRR---EALALIG 95 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSC------CCHHHHHHHHHHHHHHHHHHHSCCCCTTT---SEEEESS
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCC------CCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cEEEcCC
Confidence 456888877775 479999999887754211223 222334566655556666667886 221 2233565
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217 96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii 174 (447)
++++..++.++++|||+|++..|.|.++.. .+...|. +++.+++ ++++.+|++++++++++ +|++|+
T Consensus 96 ~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~-~~~~~~d~~~l~~~l~~-~~~~v~ 163 (376)
T 2dou_A 96 SQEGLAHLLLALTEPEDLLLLPEVAYPSYFG--------AARVASL--RTFLIPL-REDGLADLKAVPEGVWR-EAKVLL 163 (376)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHTTC--EEEEECB-CTTSSBCGGGSCHHHHH-HEEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEECCCCcHhHHH--------HHHHcCC--EEEEeeC-CCCCCCCHHHHHHhhcc-CceEEE
Confidence 589999999999999999999988766531 2234454 4455555 35567999999998875 799999
Q ss_pred EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C--cccEEEeCCCccc--CCCCCceE
Q 013217 175 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMI 242 (447)
Q Consensus 175 ~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K~l--~Gp~gG~i 242 (447)
++.++||+ ..+ +++|.++|+++|+++|+|++|..+ ...+.....+ + ..+++++|+||++ +|.|.|++
T Consensus 164 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 242 (376)
T 2dou_A 164 LNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ-VYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFA 242 (376)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG-BSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEE
T ss_pred ECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEE
Confidence 98777775 444 678999999999999999998543 3222111111 1 3568899999997 46778999
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN 322 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 322 (447)
++++ ++.+.+......... +++....+++..+++.. ...+++..+++.++++.+.+.|.+. +++..+ ..+
T Consensus 243 ~~~~------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~ 312 (376)
T 2dou_A 243 LGSE------EALARLERVKGVIDF-NQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV-LSLLPP-RAT 312 (376)
T ss_dssp EECH------HHHHHHHHHHHHHCC-CSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCC-CBS
T ss_pred ecCH------HHHHHHHHHHHhccc-CCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCC-Cee
Confidence 9887 677766543222212 33444455555555432 2335677788888999999999887 666543 235
Q ss_pred eeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 323 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 323 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
+++|+++.. +.+..++.+.|.++||.+..+..++. ...+.+|++++. + +++++++++.|++++
T Consensus 313 ~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~f~~---~~~~~~Ris~~~--~----~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 313 MYLWGRLPE-GVDDLEFGLRLVERGVALAPGRGFGP---GGKGFVRIALVR--P----LEELLEAAKRIREAL 375 (376)
T ss_dssp SEEEEECCT-TCCHHHHHHHHHHTTEECEEGGGGCG---GGTTEEEEECCS--C----HHHHHHHHHHHHHTC
T ss_pred EEEEEECCC-CCCHHHHHHHHHHCCEEEcCchhhCC---CCCCeEEEEecC--C----HHHHHHHHHHHHHHh
Confidence 567777753 45677888888878999965422211 124689999763 3 889999998887654
No 72
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.95 E-value=1.8e-26 Score=228.24 Aligned_cols=281 Identities=17% Similarity=0.127 Sum_probs=198.6
Q ss_pred CCHHHH---HHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccC----CCCCCCCcccCchhHHHHHHHHHHHHHH
Q 013217 4 CNPEVC---EIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRAL 76 (447)
Q Consensus 4 ~~~~~~---~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~----~~g~~~~~~~~g~~~~~~le~~~~~~~~ 76 (447)
.|+++. +.+.+|.++|...+++++++|. +.|++++.+...... .+||+..++ ..+.+| ++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-----g~~~Le----~~lA 84 (427)
T 3hvy_A 16 INERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTNSSGYGYNDI-----GRDSLD----RVYA 84 (427)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTTCH-----HHHHHH----HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcccCcCCCCCch-----hHHHHH----HHHH
Confidence 467777 6667888999999999999996 899999988654322 234443332 256666 6889
Q ss_pred HHcCCCCCccceeee--cCCcHHHHHHHHHHhcCCCCEEEEec-CCCCcccCC--Ccccc-ccccccccceeEEEecccC
Q 013217 77 AAFNLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSH--GFMTP-KRRVSGTSIYFESMPYRLD 150 (447)
Q Consensus 77 ~~~g~~~~~~~~~v~--~~sGs~a~~~~~~al~~pgd~Vl~~~-~~~~~~~~~--~~~~~-~~~~~~~g~~~~~~~~~~~ 150 (447)
+++|++. .+++ ++||++||.+++.++++|||+|++.+ +.|+++... +.... ...+...|. +++.++.
T Consensus 85 ~l~g~e~----alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~- 157 (427)
T 3hvy_A 85 NIFNTES----AFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV--KYKMVDL- 157 (427)
T ss_dssp HHHTCSE----EEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC--EEEECCC-
T ss_pred HHhCCCc----eEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC--EEEEecC-
Confidence 9999986 3443 68999999999999999999999998 777665310 00000 011223444 5555545
Q ss_pred CCCCCCCHHHHHHHhhh-hCCcEEEEcC----CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC
Q 013217 151 ESTGLVDYDMLEKTAIL-FRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK 221 (447)
Q Consensus 151 ~~~~~id~~~l~~~~~~-~~~klii~~~----~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~ 221 (447)
+++.+|++++++++++ .+||+|+++. ++|++ ..|+++|+++|++ +|+++++|++|+.+... ..|+.
T Consensus 158 -~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~----~~p~~ 232 (427)
T 3hvy_A 158 -KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEE----KEPTD 232 (427)
T ss_dssp -BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSS----SCGGG
T ss_pred -CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccC----CCCcc
Confidence 4678999999999983 3899999987 66664 5689999999999 89999999998665421 23333
Q ss_pred -cccEEEeCCCcccCC---CCCceEEeecCCcchhhHHHHhhhc-cCCCCC--CCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217 222 -YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNA-VFPGLQ--GGPHNHTIGGLAVCLKHAQSPEFKVYQ 294 (447)
Q Consensus 222 -~~Di~~~s~~K~l~G---p~gG~i~~~~~~~~~~~~~~~i~~~-~~~~~~--g~p~~~~~aal~~al~~~~~~~~~~~~ 294 (447)
++|++++|+||+++| ++||++++++ ++.+++... ..++.. .++.... ...+++.+. ....++
T Consensus 233 ~gaDiv~~S~sK~lgg~g~~~GG~i~~~~------~li~~l~~~~~~~~~g~~~~~~~~~---a~~~~~gl~--~~~~r~ 301 (427)
T 3hvy_A 233 VGADIIAGSLIKNIGGGIATTGGYIAGKE------EYVTQATFRVTVPGIGGECGSTFGV---MRSLYEGLF--MAPHVT 301 (427)
T ss_dssp GTCSEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTC---HHHHHHHHH--HHHHHH
T ss_pred cCCeEEEECCcccccccccceEEEEEECH------HHHHHHHHHhhcCCcccccCCCHHH---HHHHHHhHh--HHHHHH
Confidence 589999999999987 7899999987 788877663 233331 2232211 111222221 134678
Q ss_pred HHHHHHHHHHHHHHHHCCcEeeeC
Q 013217 295 NKVVSNCRALASRLVELGYKLVSG 318 (447)
Q Consensus 295 ~~~~~~~~~l~~~L~~~g~~~~~~ 318 (447)
++..+|+..+++.|++.|+++.++
T Consensus 302 ~~~~~~a~~la~~L~~~g~~V~p~ 325 (427)
T 3hvy_A 302 IEAVKGAVFCARIMELAGFDVLPK 325 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEESC
T ss_pred HHHHHHHHHHHHHHHhCCCeecCC
Confidence 899999999999999999988543
No 73
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.95 E-value=9.1e-26 Score=221.65 Aligned_cols=331 Identities=16% Similarity=0.125 Sum_probs=225.7
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHH
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 97 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~ 97 (447)
...|+|..+++. .++.+.+++...+.+ ...|+.. ....+++ +.++++++++++.+ +.+++|++
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~~~~~l~----~~la~~~~~~~~~v---~~~~g~~~ 89 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQYAPP------AGLPALR----EALAEEFAVEPESV---VVTSGATE 89 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCSCCCT------TCCHHHH----HHHHHHHTSCGGGE---EEESSHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcCCCCC------CCCHHHH----HHHHHhcCCChhhE---EEcCChHH
Confidence 567888777764 478999999887754 2233321 1123444 57778899886542 22345569
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC--CCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKLIIA 175 (447)
Q Consensus 98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~id~~~l~~~~~~~~~klii~ 175 (447)
|+..++.++++|||+|++.++.|.++.. .+...|. +++.++++ ++++.+|+++|++++++ ++++|++
T Consensus 90 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 158 (381)
T 1v2d_A 90 ALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGA--KARLVRLDLTPEGFRLDLSALEKALTP-RTRALLL 158 (381)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEEETTEEECCHHHHHTTCCT-TEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEeCCCCCccCCcCHHHHHHhcCc-CCEEEEE
Confidence 9999999999999999999998876531 2334454 44555554 34578999999998876 7899998
Q ss_pred cCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----CcccEEEeCCCccc--CCCCCceEEe
Q 013217 176 GASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KYCDVVTTTTHKSL--RGPRGGMIFF 244 (447)
Q Consensus 176 ~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----~~~Di~~~s~~K~l--~Gp~gG~i~~ 244 (447)
+.++||+ ..+ +++|.++|+++|+++++|++|+.+.. +....++ .+.|++++|+||++ +|+|.|++++
T Consensus 159 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~--g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~ 236 (381)
T 1v2d_A 159 NTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY--GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVG 236 (381)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS--SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEEC
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc--CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEe
Confidence 8777765 444 78999999999999999999854322 2111111 24789999999987 4667799999
Q ss_pred ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCe
Q 013217 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH 323 (447)
Q Consensus 245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 323 (447)
++ ++.+.+....... ..+++....+++..+++... ..++++..+++.++++++.+.|.+.|+++..+ ..+.
T Consensus 237 ~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~ 308 (381)
T 1v2d_A 237 PK------EFMPRLAGMRQWT-SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVP-EGTY 308 (381)
T ss_dssp CT------TTHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECC-SBSS
T ss_pred CH------HHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC-Ccce
Confidence 87 5555554322111 12335555555566776542 34567788899999999999999989887654 2345
Q ss_pred eEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 324 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
++|+++... + +.+.|.++||.+..+..++. .+...+.+|++++. + +++++++++.|.+++...
T Consensus 309 ~~~~~~~~~--~---~~~~l~~~gi~v~~g~~~~~-~~~~~~~iRi~~~~--~----~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 309 FLMAELPGW--D---AFRLVEEARVALIPASAFYL-EDPPKDLFRFAFCK--T----EEELHLALERLGRVVNSP 371 (381)
T ss_dssp EEEEECTTC--C---HHHHHHHTCEECEEGGGGCS-SSCCTTEEEEECCS--C----HHHHHHHHHHHHHHC---
T ss_pred EEEEecChH--h---HHHHHHhCCEEEecchHhCC-CCCCCCEEEEEeCC--C----HHHHHHHHHHHHHHHhhc
Confidence 667777532 2 77788899999975432221 11234689999764 4 899999999999887654
No 74
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.95 E-value=3.2e-26 Score=228.72 Aligned_cols=351 Identities=15% Similarity=0.144 Sum_probs=217.0
Q ss_pred cCeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HHH
Q 013217 21 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPA 98 (447)
Q Consensus 21 ~~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~a 98 (447)
..+.|..+++ .+|+.|++++...+.+. .+||...|..+... .......++++++++|+++++ |.+++| ++|
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~----v~~~~g~t~a 90 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKA-KDIINTARASLAKMIGGKPQD----IIFTSGGTES 90 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHH-HHHHHHHHHHHHHHHTCCGGG----EEEESCHHHH
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHh--cCCCccCcHHHHHH-HHHHHHHHHHHHHHcCCCcCe----EEEeCChHHH
Confidence 4566655554 57899999999888653 36666544322222 233345678999999997653 233555 699
Q ss_pred HHHHHHHhc--------CCCCEEEEecCCCCcccCC-----Ccccc----ccccccccceeEEEecccCCCCCCCCHHHH
Q 013217 99 NFEVYTAIL--------KPHDRIMGLDLPHGGHLSH-----GFMTP----KRRVSGTSIYFESMPYRLDESTGLVDYDML 161 (447)
Q Consensus 99 ~~~~~~al~--------~pgd~Vl~~~~~~~~~~~~-----~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~id~~~l 161 (447)
+..++.+++ +|||+|++..|.|.++... .+... .......| .+++.++++++++.+|+++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g--~~v~~v~~~~~~~~~d~~~l 168 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQV--AEVTFVPVSKVNGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTS--CEEEEECCCTTTSSCCHHHH
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcC--cEEEEEecCcccCCcCHHHH
Confidence 999988876 5999999988887643100 00000 00001124 35556666644678999999
Q ss_pred HHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhC----------CEEEEehhhhccccccccCCCCCCcccEEEeC
Q 013217 162 EKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG----------ALLMMDMAHISGLVAASVVADPFKYCDVVTTT 229 (447)
Q Consensus 162 ~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g----------~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s 229 (447)
++++++ +|++|++++++||+ ..|+++|.++|+++| +++++|++|+.|....+... .+.|++++|
T Consensus 169 ~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~---~~~d~~~~s 244 (432)
T 3a9z_A 169 LAAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVED---LGVDFLTIV 244 (432)
T ss_dssp HHTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHH---HCCSEEEEE
T ss_pred HHhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhh---cCCCEEEEe
Confidence 999986 89999998777765 789999999999999 99999999976643211110 047999999
Q ss_pred CCcccCCCCCceEEeecCCcchhhHHHHhhhccC------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217 230 THKSLRGPRGGMIFFKKDPVLGVELESAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 303 (447)
Q Consensus 230 ~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~ 303 (447)
+||++ ||+.|+++++++ .....+....+ ....++++...++++.++++.+. .++++..+++.+++++
T Consensus 245 ~~K~~-g~~~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~~~~~~~~ 317 (432)
T 3a9z_A 245 GHKFY-GPRIGALYVRGV-----GKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAHMRDIRDY 317 (432)
T ss_dssp GGGTT-CCSCEEEEETTB-----TTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhHhc-CCcceEEEEccc-----cccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 99986 788999999873 11222222111 11235677777777777887654 3567888899999999
Q ss_pred HHHHHHH-CCcEee--eC--C-C-CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC--CCCC---------CCCC---
Q 013217 304 LASRLVE-LGYKLV--SG--G-S-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNS--VPGD---------KSAL--- 362 (447)
Q Consensus 304 l~~~L~~-~g~~~~--~~--~-~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~--~p~~---------~~~~--- 362 (447)
+.+.|.+ .|+++. .+ + . ......+.+...+.+..++.+.| .+|.++.+. .++. ....
T Consensus 318 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~ 395 (432)
T 3a9z_A 318 LEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVD 395 (432)
T ss_dssp HHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHH
T ss_pred HHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCcc
Confidence 9999988 466543 21 0 1 11233344433233455555554 366655431 1110 0000
Q ss_pred -CCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 363 -VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 363 -~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
..+.||++++.+++ ++|++++++.|+++++.
T Consensus 396 ~~~~~iRis~~~~~t----~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 396 VARNAVRLSVGRSTT----RAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp HHTTEEEEECCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCC----HHHHHHHHHHHHHHHHH
Confidence 13689999988777 99999999999988764
No 75
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=8e-26 Score=224.28 Aligned_cols=338 Identities=17% Similarity=0.104 Sum_probs=224.3
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .++.+.+++ ..+.+. ..+|+.. ....++++...+++.+.+|.+ ++.+ +.+++|
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~-~~~y~~~------~g~~~l~~~la~~~~~~~g~~~~~~~v---~~~~g~ 111 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKPE-VVYYSHS------AGIWELREAFASYYKRRQRVDVKPENV---LVTNGG 111 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCCS-SCCCCCT------TCCHHHHHHHHHHHHHTSCCCCCGGGE---EEESHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhcC-CCCCCCC------CCcHHHHHHHHHHHHHHhCCCCCHHHE---EEeCCH
Confidence 456788777764 478899999 777542 1233321 223456655566777666644 3322 223445
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEE
Q 013217 96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~klii 174 (447)
++|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++ +++.+ +++|++++++ ++++|+
T Consensus 112 t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~-~~~l~~~l~~-~~~~v~ 179 (409)
T 2gb3_A 112 SEAILFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGV--KLIPVTRRMEEGFAI-PQNLESFINE-RTKGIV 179 (409)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTC--EEEEEECCGGGTSCC-CTTGGGGCCT-TEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeccCCCCCCcc-HHHHHHhhCc-CCeEEE
Confidence 699999999999999999999998876532 2334454 455555553 23445 8889888876 889998
Q ss_pred EcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---CcccEEEeCCCcccC--CCCCceEEe
Q 013217 175 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLR--GPRGGMIFF 244 (447)
Q Consensus 175 ~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l~--Gp~gG~i~~ 244 (447)
++.++||+ .. ++++|.++|+++|+++++|++|+.+. ..+.....+ ...|++++|+||+++ |.|.|++++
T Consensus 180 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 258 (409)
T 2gb3_A 180 LSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIV-FRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLIT 258 (409)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB-CSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred ECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccc-cCCCCCCccccCCCCEEEEecchhccCCccceEEEEEE
Confidence 88777764 33 47999999999999999999986543 222111111 246899999999983 556799999
Q ss_pred ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEe-eeCCCCCe
Q 013217 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL-VSGGSDNH 323 (447)
Q Consensus 245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~ 323 (447)
+++ ++.+.+......+. +++....+++..+++.. ...+++..+++.++++.+.+.|++.|+++ ..+ ..+.
T Consensus 259 ~~~-----~l~~~l~~~~~~~~--~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~ 329 (409)
T 2gb3_A 259 RNE-----ELISHAMKLAQGRL--APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLEEHGLKRFTKP-SGAF 329 (409)
T ss_dssp SCH-----HHHHHHHHHHHHSC--CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC-SBSS
T ss_pred CcH-----HHHHHHHHHHhccC--CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCC-CeeE
Confidence 873 45555544322222 44555555555566432 23456778888899999999998888877 433 3355
Q ss_pred eEEecCCCCCCCHHHHHHHHhhc------CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 324 LVLVDLRPMGIDGARVEKILDMA------SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~~L~~~------gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+.|+++. +.+..++.+.|.+. ||.+..+...+...+..++.+|++++ ++ +++++++++.|+++++.
T Consensus 330 ~~~~~~~--~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~----~e~i~~~~~~l~~~l~~ 401 (409)
T 2gb3_A 330 YITAELP--VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LE----KDLLSRAIDVLMEGLKM 401 (409)
T ss_dssp EEEEECS--SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SC----HHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC--CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CC----HHHHHHHHHHHHHHHHH
Confidence 6677765 45677888877665 99987542221111123568999976 44 89999999999998875
Q ss_pred H
Q 013217 398 T 398 (447)
Q Consensus 398 ~ 398 (447)
.
T Consensus 402 ~ 402 (409)
T 2gb3_A 402 F 402 (409)
T ss_dssp H
T ss_pred h
Confidence 4
No 76
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.95 E-value=1.9e-25 Score=219.80 Aligned_cols=348 Identities=12% Similarity=0.104 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHhhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-
Q 013217 6 PEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD- 82 (447)
Q Consensus 6 ~~~~~~~~~e~~~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~- 82 (447)
+.++..+.+ .......|+|..+.+. .++.+.+++...+.+. ..+|+.. ....++++...+++++.+|.+
T Consensus 17 ~~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~l~~~~g~~~ 88 (386)
T 1u08_A 17 TTIFTQMSA-LAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAPM------TGVQALREAIAQKTERLYGYQP 88 (386)
T ss_dssp CCHHHHHHH-HHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHH-HHhcCCeEEecCCCCCCCCCHHHHHHHHHHHHhh-ccCCCCC------CCCHHHHHHHHHHHHHHhCCCC
Confidence 334444433 2233467888777653 5789999998877542 1233322 112456666667777777854
Q ss_pred -CC-ccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHH
Q 013217 83 -EN-KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM 160 (447)
Q Consensus 83 -~~-~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~ 160 (447)
++ .+ +.+++|++|+..++.++++|||+|++.+|.|.++.. .+...|. +++.++++++++.+|+++
T Consensus 89 ~~~~~v---~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~ 155 (386)
T 1u08_A 89 DADSDI---TVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGG--IVKRMALQPPHFRVDWQE 155 (386)
T ss_dssp CTTTTE---EEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCTTTCCCCHHH
T ss_pred CCCCCE---EEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeecCcccCcCCHHH
Confidence 43 32 223444599999999999999999999998876531 2334454 555555654457899999
Q ss_pred HHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC------CcccEEEeC
Q 013217 161 LEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDVVTTT 229 (447)
Q Consensus 161 l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~------~~~Di~~~s 229 (447)
|++++++ ++++|+++.++||+ ..+ +++|.++|+++|+++|+|++|.. +...+....++ ...|++++|
T Consensus 156 l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i~~~s 233 (386)
T 1u08_A 156 FAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEH-INFSQQGHASVLAHPQLRERAVAVSS 233 (386)
T ss_dssp HHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTT-CBCCSSCCCCGGGSHHHHTTEEEEEE
T ss_pred HHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccc-cccCCCCCcChhcccCccCcEEEEec
Confidence 9999975 88999988777775 444 68999999999999999999854 33222111111 136899999
Q ss_pred CCcccC--CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 013217 230 THKSLR--GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR 307 (447)
Q Consensus 230 ~~K~l~--Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (447)
+||+++ |.|.|++++++ ++.+.+........ .+++....+++..+++.. ....++..+++.++++.+.+.
T Consensus 234 ~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~ 305 (386)
T 1u08_A 234 FGKTYHMTGWKVGYCVAPA------PISAEIRKVHQYLT-FSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNA 305 (386)
T ss_dssp HHHHTTCGGGCCEEEECCH------HHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHH
T ss_pred chhhcCCcccceEEEEcCH------HHHHHHHHHHHhhc-cCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 999984 56679999987 67666654321111 223444455556677654 344577788888999999999
Q ss_pred HHHCCcEeeeCCCCCeeEEecCCCCC-CCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217 308 LVELGYKLVSGGSDNHLVLVDLRPMG-IDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV 385 (447)
Q Consensus 308 L~~~g~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~ 385 (447)
|++.|+++..+ ..++++|+++...+ .+..++.+.| +++||.+..+...+. .+..++.+|+++. ++ +++++
T Consensus 306 L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~~~iRis~~--~~----~~~i~ 377 (386)
T 1u08_A 306 LNESRLEILPC-EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA-DPFPHKLIRLCFA--KK----ESTLL 377 (386)
T ss_dssp TTSSSCEECCC-CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS-SCCCSCEEEEECC--SC----HHHHH
T ss_pred HHHCCCeecCC-CceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCC-CCCCCCEEEEEEc--CC----HHHHH
Confidence 98888887643 33566788875421 4567777766 478999975421111 1123468999985 24 89999
Q ss_pred HHHHHHH
Q 013217 386 AIADFIH 392 (447)
Q Consensus 386 ~l~~~i~ 392 (447)
++++.|+
T Consensus 378 ~~~~~l~ 384 (386)
T 1u08_A 378 AAAERLR 384 (386)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9888775
No 77
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.95 E-value=1.8e-25 Score=222.02 Aligned_cols=339 Identities=14% Similarity=0.104 Sum_probs=223.9
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--C-CccceeeecCC
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--E-NKWGVNVQPLS 94 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~-~~~~~~v~~~s 94 (447)
+..|+|..+++. .++.+.+++...+.+....+|+. .....++++...+++.+.+|.+ + +.+ +.+++
T Consensus 37 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~ia~~~~~~~g~~~~~~~~v---~~t~g 107 (412)
T 2x5d_A 37 EDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYST------SRGIPRLRRAISHWYRDRYDVQIDPESEA---IVTIG 107 (412)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHTC---------C------TTCCHHHHHHHHHHHHHHHCCCCCTTTSE---EEESC
T ss_pred CCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC------CCCcHHHHHHHHHHHHHHhCCCCCCCcCE---EEcCC
Confidence 346888777764 47899999988765421123321 1123456655556666666863 3 332 22345
Q ss_pred cHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEE
Q 013217 95 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI 173 (447)
Q Consensus 95 Gs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kli 173 (447)
|++|+..++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|++++++++++ ++++|
T Consensus 108 ~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v 176 (412)
T 2x5d_A 108 SKEGLAHLMLATLDHGDTILVPNPSYPIHIY--------GAVIAGA--QVRSVPLVPGIDFFNELERAIRESIP-KPRMM 176 (412)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHHTC--EEEEEECSTTSCHHHHHHHHHHTEES-CCSEE
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeecCCccCCCCCHHHHHHhccc-CceEE
Confidence 5699999999999999999999998876532 2233454 5555556644 345899999998875 89999
Q ss_pred EEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC---CC---CcccEEEeCCCccc--CCCCCc
Q 013217 174 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PF---KYCDVVTTTTHKSL--RGPRGG 240 (447)
Q Consensus 174 i~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~---~~---~~~Di~~~s~~K~l--~Gp~gG 240 (447)
+++.++||+ ..+ +++|.++|+++|+++|+|++|..+. ..+.... .+ ...+++++|+||++ +|.|.|
T Consensus 177 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 255 (412)
T 2x5d_A 177 ILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIV-YDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIG 255 (412)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB-CTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCE
T ss_pred EECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCCChhhccCccCcEEEEecCccccCCcccceE
Confidence 998777775 444 6889999999999999999986543 2211111 11 14679999999998 466779
Q ss_pred eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC
Q 013217 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS 320 (447)
Q Consensus 241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 320 (447)
++++++ ++.+.+....... ..+++....+++..+++.. ...+++..+++.++++.+.+.|.+.|+++..+ .
T Consensus 256 ~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~ 326 (412)
T 2x5d_A 256 FMVGNP------ELVSALARIKSYH-DYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAGWMVENP-K 326 (412)
T ss_dssp EEEECH------HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC-S
T ss_pred EEEcCH------HHHHHHHHHHhhh-ccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC-C
Confidence 999977 6776665432211 1234555555555566543 34467778888999999999998888876543 3
Q ss_pred CCeeEEecCCCCCC---CHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 321 DNHLVLVDLRPMGI---DGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 321 ~~~~~~v~~~~~~~---~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
.++++|+++.. ++ +..++.+.| +++||.+..+..++. ...+.+|++++. + ++++++.++.|.++++
T Consensus 327 ~g~~~~~~~~~-~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~~~iRis~~~--~----~~~l~~~l~~l~~~l~ 396 (412)
T 2x5d_A 327 ASMYVWAKIPE-PYAHLGSLEFAKKLLQDAKVSVSPGIGFGD---YGDDHVRFALIE--N----RDRLRQAVRGIKAMFR 396 (412)
T ss_dssp BSSEEEEECCT-TTGGGCHHHHHHHHHHHHCEECEEGGGGCG---GGTTEEEEECCS--C----HHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEcCC-ccCCCCHHHHHHHHHHHCCEEEeCchhhCC---CCCCeEEEEecC--C----HHHHHHHHHHHHHHHH
Confidence 35567777742 34 566777777 558999975432211 124689999864 4 8899999999998887
Q ss_pred HH
Q 013217 397 IT 398 (447)
Q Consensus 397 ~~ 398 (447)
..
T Consensus 397 ~~ 398 (412)
T 2x5d_A 397 AD 398 (412)
T ss_dssp HT
T ss_pred hc
Confidence 53
No 78
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.95 E-value=1.1e-26 Score=227.74 Aligned_cols=324 Identities=10% Similarity=0.012 Sum_probs=209.0
Q ss_pred CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHH-HHHcC-CCCCccceeeecCCcHHHHHHHHHHh-c
Q 013217 31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA-LAAFN-LDENKWGVNVQPLSGSPANFEVYTAI-L 107 (447)
Q Consensus 31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~-~~~~g-~~~~~~~~~v~~~sGs~a~~~~~~al-~ 107 (447)
..++.+++++.+.+.+.+ +........++| +.+ ++++| .+. .+.++||+.|+..++.++ +
T Consensus 13 ~~~~~i~~a~~~~~~~~~--------~~~~~~~~~~l~----~~~~a~~~g~~~~-----~v~~~sgt~al~~al~~l~~ 75 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHI--------YTNYGPINQRFE----QTIMSGFFQNRGA-----VTTVANATLGLMAAIQLKKR 75 (377)
T ss_dssp CCGGGGHHHHHHHHHHTC--------CSSSCHHHHHHH----HHHHHHTSTTCSE-----EEEESCHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHcCC--------cccCCHHHHHHH----HHHHHHHhCCCCe-----EEEeCCHHHHHHHHHHHcCC
Confidence 346778888888776632 111123455666 567 89999 332 355689999999999998 9
Q ss_pred CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC--CcEEEEcCCCCCCCCC
Q 013217 108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGASAYPRDFD 185 (447)
Q Consensus 108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~--~klii~~~~~~~~~~~ 185 (447)
+|||+|+++++.|.++.. .+...|. +++.++++++++.+|++++++++...+ ||+|+.+++ ++...|
T Consensus 76 ~~Gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~~-~G~~~~ 144 (377)
T 3ju7_A 76 KKGKYALMPSFTFPATPL--------AAIWCGL--EPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYAT-FGSWMN 144 (377)
T ss_dssp TTCCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBCG-GGBCCC
T ss_pred CCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEECC-CCCccC
Confidence 999999999998877532 2334554 666666776678999999999883336 888875432 334789
Q ss_pred hHHHHHHHHHhCCEEEEehhhhccccccccCC-CCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCC
Q 013217 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFP 264 (447)
Q Consensus 186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~ 264 (447)
+++|.++|+ +|+++++|++|+.|....+... ..+...++++++.||+++++.||+++++++ ++.+++......
T Consensus 145 ~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~-----~l~~~~~~~~~~ 218 (377)
T 3ju7_A 145 LEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNE-----EDIQRIKRMGNF 218 (377)
T ss_dssp CHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHHHHHHTBT
T ss_pred HHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCH-----HHHHHHHHHHhc
Confidence 999999999 9999999999988865433221 111223444455689998878899988774 676666543332
Q ss_pred CC--------CC-CCcH-HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC---cEeeeCC--CCCee-EEec
Q 013217 265 GL--------QG-GPHN-HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG---YKLVSGG--SDNHL-VLVD 328 (447)
Q Consensus 265 ~~--------~g-~p~~-~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~--~~~~~-~~v~ 328 (447)
+. .| ...+ ...+++ ++..+ ..++++.++..++++.+.+.|.+.+ +.+.... ...+. +.+.
T Consensus 219 g~~~~~~~~~~g~~~~~~~~~aa~--~~~~l--~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (377)
T 3ju7_A 219 GFDTNRECTMMGFNCKMSEYAAAI--GIATM--KKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPIL 294 (377)
T ss_dssp TBCTTSCBCSSCCBCCCCHHHHHH--HHHHH--HTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEE
T ss_pred CCCCCCceeeccccCCCCHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEE
Confidence 21 01 1111 112222 22222 3467778899999999999998854 2222211 11222 2233
Q ss_pred CCCCCCCHHHHHHHHhhcCeEEccCC-CCCCCCC-C--------------CCCeEEEecCccccCCCCHHHHHHHHHHHH
Q 013217 329 LRPMGIDGARVEKILDMASITLNKNS-VPGDKSA-L--------------VPGGIRIGSPAMTTRGFSEKEFVAIADFIH 392 (447)
Q Consensus 329 ~~~~~~~~~~~~~~L~~~gI~v~~~~-~p~~~~~-~--------------~~~~iRig~~~~~~~g~~~~di~~l~~~i~ 392 (447)
+. ...+.+++.+.|.++||.++..+ .|.+..+ + ....||+.++...+ ++|++++++.|+
T Consensus 295 ~~-~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t----~~di~~v~~~l~ 369 (377)
T 3ju7_A 295 CP-EEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMT----KEIVEQIVICLG 369 (377)
T ss_dssp CC-TTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCC----HHHHHHHHHHHT
T ss_pred eC-ChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCC----HHHHHHHHHHHH
Confidence 32 23357899999999999998764 2322211 0 12358888765555 999999999998
Q ss_pred HHHHH
Q 013217 393 EGVEI 397 (447)
Q Consensus 393 ~~l~~ 397 (447)
+++..
T Consensus 370 ~~~~~ 374 (377)
T 3ju7_A 370 QKVVS 374 (377)
T ss_dssp C----
T ss_pred HHHhc
Confidence 87764
No 79
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.95 E-value=9.3e-25 Score=213.58 Aligned_cols=322 Identities=17% Similarity=0.150 Sum_probs=225.3
Q ss_pred CeeEecCCCC--CCHHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCc
Q 013217 22 SLELIASENF--TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG 95 (447)
Q Consensus 22 ~i~l~~~~n~--~~~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sG 95 (447)
.|+|..+++. .++.+.+++.+.+.+.. ..+|+.. .. .++++...+++.+.+|. +++ .|.+++|
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~~-~~l~~~la~~l~~~~g~~~~~~----~v~~~~G 100 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRYPER------DA-VELRDELAAYITKQTGVAVTRD----NLWAANG 100 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCT------TC-HHHHHHHHHHHHHHHCCCCCGG----GEEEESH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCc------cH-HHHHHHHHHhhhhcccCCCChH----hEEECCC
Confidence 3788777774 47899999988775420 1233221 12 35665555666666654 343 3444677
Q ss_pred H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217 96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii 174 (447)
+ +++..++.++++|||+|++.++.|.++.. .+...|. +++.++.+ +++.+|++++++++++.++++|+
T Consensus 101 ~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~ 169 (369)
T 3cq5_A 101 SNEILQQLLQAFGGPGRTALGFQPSYSMHPI--------LAKGTHT--EFIAVSRG-ADFRIDMDVALEEIRAKQPDIVF 169 (369)
T ss_dssp HHHHHHHHHHHHCSTTCEEEEEESSCTHHHH--------HHHHTTC--EEEEEECC-TTSSCCHHHHHHHHHHHCCSEEE
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCC--EEEEecCC-cCCCCCHHHHHHHhhccCCCEEE
Confidence 6 88889999999999999999998876532 2234454 44555555 45689999999998765899999
Q ss_pred EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC-CCCc-ccEEEeCCCcccC--CCCCceEEeecCC
Q 013217 175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD-PFKY-CDVVTTTTHKSLR--GPRGGMIFFKKDP 248 (447)
Q Consensus 175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~-~~~~-~Di~~~s~~K~l~--Gp~gG~i~~~~~~ 248 (447)
++.++||+ ..|.+++.++|+.+++++++|++|+.+......... .-.. .+++++|+||+++ |.|.|++++++
T Consensus 170 ~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-- 247 (369)
T 3cq5_A 170 VTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP-- 247 (369)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT--
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH--
Confidence 98777764 789999999999999999999998654321111110 0012 4589999999984 66679999987
Q ss_pred cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEec
Q 013217 249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD 328 (447)
Q Consensus 249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~ 328 (447)
++.+.+.....+. +++....++...+++.. ..+++..+++.++++.+.+.|.+.|+++..+ ..++++++
T Consensus 248 ----~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~ 316 (369)
T 3cq5_A 248 ----AFIDAVMLVRLPY---HLSALSQAAAIVALRHS--ADTLGTVEKLSVERVRVAARLEELGYAVVPS--ESNFVFFG 316 (369)
T ss_dssp ----HHHHHHHTTSCTT---CSCHHHHHHHHHHHHTH--HHHHTHHHHHHHHHHHHHHHHHHHTCEEECC--SSSEEEEE
T ss_pred ----HHHHHHHHcCCCC---CCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC--CCeEEEEE
Confidence 7777776543322 34555555555566541 2356778888899999999998888887642 34566777
Q ss_pred CCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 329 ~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+. .+..++.+.|.++||.+..+ . .++.+|++++ + ++|++++.++|++++.
T Consensus 317 ~~---~~~~~l~~~l~~~gi~v~~~----~----~~~~iRis~~---~----~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DF---SDQHAAWQAFLDRGVLIRDV----G----IAGHLRTTIG---V----PEENDAFLDAAAEIIK 366 (369)
T ss_dssp CC---SSHHHHHHHHHHTTEECBCC----S----CTTEEEEECC---C----HHHHHHHHHHHHHHHT
T ss_pred CC---CCHHHHHHHHHHCCEEEEEC----C----CCCeEEEEeC---C----HHHHHHHHHHHHHHHh
Confidence 64 36778888899999998643 1 1458999976 3 8999999999988764
No 80
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.95 E-value=3.2e-25 Score=221.32 Aligned_cols=356 Identities=12% Similarity=0.032 Sum_probs=235.2
Q ss_pred CCHHHHHHHHHHHHHhhcCeeEecCCCC--CCHHHHHHHhhhhhcc--CCCCCCCCcccCchhHHHHHHHHHHHHHHHHc
Q 013217 4 CNPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAF 79 (447)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~--~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~ 79 (447)
.++.++..+.+. ..+...|+|..+.+. .++.+.+++...+... ...+|+.. ....++++...+++.+.+
T Consensus 22 ~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~g~~~l~~~la~~l~~~~ 94 (429)
T 1yiz_A 22 STKSVWVEYIQL-AAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRG------FGHPRLVQALSKLYSQLV 94 (429)
T ss_dssp CTTCHHHHHHHH-HHHHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCS------SCCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHH-hccCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCC------CCcHHHHHHHHHHHHHHh
Confidence 455566655543 334567888777663 5799999998877541 01123221 112456555566777777
Q ss_pred CCC--CC-ccceeeecCCc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC---
Q 013217 80 NLD--EN-KWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--- 152 (447)
Q Consensus 80 g~~--~~-~~~~~v~~~sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 152 (447)
|.+ ++ .+ .+++| ++|+..++.++++|||+|++..|.|.++.. .+...|. +++.++++++
T Consensus 95 g~~~~~~~~v----~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~ 160 (429)
T 1yiz_A 95 DRTINPMTEV----LVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGG--IPRFIPLKPNKTG 160 (429)
T ss_dssp TSCCCTTTSE----EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECBCCCSS
T ss_pred CCCCCCcCCE----EEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEeCCccccc
Confidence 853 43 32 23555 599999999999999999999988876531 2234454 4445555543
Q ss_pred ------CCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCC--
Q 013217 153 ------TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP-- 219 (447)
Q Consensus 153 ------~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~-- 219 (447)
++.+|+++|++++++ ++++|++++++||+ .. ++++|.++|+++|+++|+|++|.. +...+....+
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~ 238 (429)
T 1yiz_A 161 GTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH-MVFEPFEHIRIC 238 (429)
T ss_dssp SSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTSCCCCGG
T ss_pred ccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccc-cccCCCCCcChh
Confidence 457999999999976 88999988777775 44 489999999999999999999753 3322211111
Q ss_pred -C---CcccEEEeCCCcccC--CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH-----hc-C
Q 013217 220 -F---KYCDVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-----AQ-S 287 (447)
Q Consensus 220 -~---~~~Di~~~s~~K~l~--Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~-----~~-~ 287 (447)
+ .+.|+++.|+||+++ |.|.|++++++ ++.+.+....... ..+.+....+++..+++. .. .
T Consensus 239 ~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~ 311 (429)
T 1yiz_A 239 TLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE------ALLKNLQMVHQNC-VYTCATPIQEAIAVGFETELKRLKSPE 311 (429)
T ss_dssp GSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH------HHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHTTTTSTT
T ss_pred hccCCcCceEEEecchhccCCCCcceEEEEeCH------HHHHHHHHHHhhc-ccCCChHHHHHHHHHHhcccccccchH
Confidence 1 247899999999874 56679999987 6777665432111 223455555566667776 32 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCC-----------CCHHHHHHHH-hhcCeEEccCCC
Q 013217 288 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG-----------IDGARVEKIL-DMASITLNKNSV 355 (447)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~~L-~~~gI~v~~~~~ 355 (447)
..+++..+++.++++.+.+.|.+.|+++..+ ..++++|+++.... .+..++.+.| +++||.+..+..
T Consensus 312 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~ 390 (429)
T 1yiz_A 312 CYFNSISGELMAKRDYMASFLAEVGMNPTVP-QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSA 390 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTCEEEEC-SBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchH
Confidence 3457778888899999999998888887654 33566788875421 3456677766 579999965421
Q ss_pred CCCCC--CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 356 PGDKS--ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 356 p~~~~--~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
.+... ....+.+|++++ ++ +++++++++.|.++++
T Consensus 391 f~~~~~~~~~~~~iRis~~--~~----~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 391 FYSEPNKHLGEDFVRYCFF--KK----DENLQKAAEILRKWKG 427 (429)
T ss_dssp GSCGGGGGGTTTEEEEECC--SC----HHHHHHHHHHHHHHSC
T ss_pred hCCCcccCCCCCeEEEEec--CC----HHHHHHHHHHHHHhcc
Confidence 11100 011468999986 24 8999999999987653
No 81
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.95 E-value=4.7e-26 Score=226.63 Aligned_cols=335 Identities=15% Similarity=0.113 Sum_probs=218.4
Q ss_pred cCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh
Q 013217 27 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 106 (447)
Q Consensus 27 ~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al 106 (447)
+...++++.+++++...+.+.....|+. ..+..+..++++ +++++++|.+. .+.++||++|+..++.++
T Consensus 9 p~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~g~~~l~~~l~----~~la~~~g~~~-----~i~~~~gt~al~~~~~~~ 77 (418)
T 2c81_A 9 PEWPQHSDRTRRKIEEVFQSNRWAISGY--WTGEESMERKFA----KAFADFNGVPY-----CVPTTSGSTALMLALEAL 77 (418)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTCCSTTSB--CCSSCCHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHhcCCccccCc--ccCCHHHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHc
Confidence 3445678999999988886531111321 122223344444 68889999873 355688999999999999
Q ss_pred -cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCC
Q 013217 107 -LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185 (447)
Q Consensus 107 -~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~ 185 (447)
++|||+|++..+.|.++.. .+...|. +++.++++++++.+|+++|++++++ ++++|+++++ ++...+
T Consensus 78 ~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-~G~~~~ 145 (418)
T 2c81_A 78 GIGEGDEVIVPSLTWIATAT--------AVLNVNA--LPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPVHL-FGSMAN 145 (418)
T ss_dssp TCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCBCC-TTCCCC
T ss_pred CCCCcCEEEECCCccHhHHH--------HHHHcCC--EEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEeCC-cCCccc
Confidence 8999999999998877632 2334454 5666667655788999999999876 8898887642 334789
Q ss_pred hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCC
Q 013217 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG 265 (447)
Q Consensus 186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~ 265 (447)
+++|.++|+++|+++++|++|+.|....+.....+..+++.++|.||++++++||+++++++ ++.+++......+
T Consensus 146 ~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~g~~g~~~~~~~-----~l~~~~~~~~~~~ 220 (418)
T 2c81_A 146 MDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNP-----RLFELIQQLRADS 220 (418)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHHHHBTT
T ss_pred HHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCCCCeEEEEECCH-----HHHHHHHHHHHhC
Confidence 99999999999999999999987753322111111123344444599986557899998642 5555554321111
Q ss_pred -------------CC---CCCc--------HHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC
Q 013217 266 -------------LQ---GGPH--------NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS 320 (447)
Q Consensus 266 -------------~~---g~p~--------~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 320 (447)
+. +++. ....+++ .+... ..++++.++..++++++.+.|.+. |+++.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~--~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 296 (418)
T 2c81_A 221 RVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAI--LLDQL--QELDDKNAIREKNAMFLNDALSKIDGIKVMKRPP 296 (418)
T ss_dssp EEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHH--HHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCT
T ss_pred ccccccccccccchhhccccccccCcCCCcCHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCC
Confidence 00 0000 1111222 11222 246677888888999999999874 888763222
Q ss_pred C----C-eeEEecCCC---CCCCHHHHHHHHhhc-CeE---EccCCCCCCCCC-C-----------------------C-
Q 013217 321 D----N-HLVLVDLRP---MGIDGARVEKILDMA-SIT---LNKNSVPGDKSA-L-----------------------V- 363 (447)
Q Consensus 321 ~----~-~~~~v~~~~---~~~~~~~~~~~L~~~-gI~---v~~~~~p~~~~~-~-----------------------~- 363 (447)
. . +++.+.+.. .+.+..++.+.|.++ ||. ++.++.|.+..+ + .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (418)
T 2c81_A 297 QVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYP 376 (418)
T ss_dssp TEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCH
T ss_pred CCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCCh
Confidence 2 2 233355532 246778899999887 999 877543422110 0 0
Q ss_pred ------CCeEEEecCccc-cCCCCHHHHHHHHHHHHHHHHH
Q 013217 364 ------PGGIRIGSPAMT-TRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 364 ------~~~iRig~~~~~-~~g~~~~di~~l~~~i~~~l~~ 397 (447)
.+.||++++..+ | ++|+++++++|+++++.
T Consensus 377 ~~~~~~~~~lrl~~~~~~gt----~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 377 VSERASGQSIVIHHAILLAE----PSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHHHHHHHEEEEEGGGGGSC----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCEEEecCCccCCC----HHHHHHHHHHHHHHHHh
Confidence 147999999888 8 99999999999988764
No 82
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.94 E-value=1e-25 Score=220.75 Aligned_cols=333 Identities=15% Similarity=0.131 Sum_probs=224.3
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .++.|.+++...+.+. ..+|+. . + .++++...+++.+.+|.+ ++.+ +.+++|
T Consensus 23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-~--~-----~~lr~~la~~~~~~~~~~~~~~~i---~~t~g~ 90 (377)
T 3fdb_A 23 QGVLPLWVAESDFSTCPAVLQAITDAVQRE-AFGYQP-D--G-----SLLSQATAEFYADRYGYQARPEWI---FPIPDV 90 (377)
T ss_dssp TTSEECCSSCCCSCCCHHHHHHHHHHHHTT-CCSSCC-S--S-----CCHHHHHHHHHHHHHCCCCCGGGE---EEESCH
T ss_pred CCeeeecccCCCCCCCHHHHHHHHHHHHcC-CCCCCC-C--C-----HHHHHHHHHHHHHHhCCCCCHHHE---EEeCCh
Confidence 456888888774 5799999998887652 224443 1 1 234444446676666643 4432 223444
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217 96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 175 (447)
Q Consensus 96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~ 175 (447)
++|+..++.++++|||+|++..+.|.++.. .+...|. +++.++++++ +|++++++++++ ++++|++
T Consensus 91 ~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~---~d~~~l~~~l~~-~~~~v~i 156 (377)
T 3fdb_A 91 VRGLYIAIDHFTPAQSKVIVPTPAYPPFFH--------LLSATQR--EGIFIDATGG---INLHDVEKGFQA-GARSILL 156 (377)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESCCTHHHH--------HHHHHTC--CEEEEECTTS---CCHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEEccCCCC---CCHHHHHHHhcc-CCCEEEE
Confidence 599999999999999999999998876532 2334454 4555556533 999999999987 7999999
Q ss_pred cCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccc-cCCCCCC-----cccEEEeCCCccc--CCCCCceE
Q 013217 176 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPFK-----YCDVVTTTTHKSL--RGPRGGMI 242 (447)
Q Consensus 176 ~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~-~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i 242 (447)
+.++||+ .. ++++|.++|+++|+++|+|++|.. +...+ ....++. ..++++.|+||++ +|.|.|++
T Consensus 157 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 235 (377)
T 3fdb_A 157 CNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAP-LVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQI 235 (377)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGG-GBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEE
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccch-hhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEE
Confidence 8778775 44 467788889999999999999854 33333 1111221 2348899999998 46677987
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeCCC
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGGS 320 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 320 (447)
++.++ ++.+.+.... ....++++....++...+++.. ...+++..+++.++++.+.+.|++. |+++..+ .
T Consensus 236 ~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~ 307 (377)
T 3fdb_A 236 IFSNP-----SDAEHWQQLS-PVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM-Q 307 (377)
T ss_dssp ECCSH-----HHHHHHHHSC-HHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC-S
T ss_pred EeCCH-----HHHHHHHHHH-HhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC-C
Confidence 77442 6777665532 1122345666666656666653 2345777888999999999999884 8887654 3
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
.+.+.|+++...+.+.+.+...++++||.+..+...+. ..++.+|+++. ++ ++++++.++.|.++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~~Ris~~--~~----~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 308 ATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGE---DGTGFCRLNFA--TS----REVLEEAIDRMAKAVS 374 (377)
T ss_dssp BCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCG---GGTTEEEEECC--SC----HHHHHHHHHHHHHHHT
T ss_pred eeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccC---CCCCEEEEEeC--CC----HHHHHHHHHHHHHHHh
Confidence 45556788765444434445555667999975422211 12468999976 24 8999999999988775
No 83
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.94 E-value=2.6e-25 Score=219.64 Aligned_cols=336 Identities=13% Similarity=0.075 Sum_probs=219.9
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccC---CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeec
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQP 92 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~---~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~ 92 (447)
++.|+|..+.+. .++.+.+++...+.+.. ..+|+.. ....++.+...+++.+.+|. +++. |.+
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~----i~~ 104 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSA------QGDVETRAAIAEFLNNTHGTHFNADN----LYM 104 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGGG----EEE
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCC------CCcHHHHHHHHHHHHHHhCCCCChHH----EEE
Confidence 456888766542 57899999988775421 1233221 11234555556778888885 4442 333
Q ss_pred CCc-HHHHHHHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 013217 93 LSG-SPANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP 170 (447)
Q Consensus 93 ~sG-s~a~~~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~ 170 (447)
++| ++|+..++.++++|| |+|++.+|.|.++.. .+...|. +++.++++++++.+|+++|++++++ ++
T Consensus 105 ~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~ 173 (398)
T 3ele_A 105 TMGAAASLSICFRALTSDAYDEFITIAPYFPEYKV--------FVNAAGA--RLVEVPADTEHFQIDFDALEERINA-HT 173 (398)
T ss_dssp ESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCTTTSSCCHHHHHHTCCT-TE
T ss_pred ccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCCcCCcCCHHHHHHHhCc-CC
Confidence 555 599999999999999 999999998876531 2334454 5666667655678999999999987 89
Q ss_pred cEEEEcCCCCCC--CCC---hHHHHHHHHH------hCCEEEEehhhhccccccc-cCCCCCC--cccEEEeCCCccc--
Q 013217 171 KLIIAGASAYPR--DFD---YPRMRQIADA------VGALLMMDMAHISGLVAAS-VVADPFK--YCDVVTTTTHKSL-- 234 (447)
Q Consensus 171 klii~~~~~~~~--~~~---~~~i~~ia~~------~g~~livD~a~~~g~~~~~-~~~~~~~--~~Di~~~s~~K~l-- 234 (447)
++|+++.++||+ ..+ +++|.++|++ +|+++|+|++|.. +...+ ..+.... ..++++.|+||++
T Consensus 174 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 252 (398)
T 3ele_A 174 RGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYRE-IVYDGIKVPFVTKYYDNTLVCYSYSKSLSL 252 (398)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTT-CBCTTCCCCCGGGTCSSEEEEEESTTTSSC
T ss_pred CEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccc-cccCCCCcCChHhhcCCeEEEEehhhcCCC
Confidence 999998788875 566 6777789999 9999999999753 33332 1111111 3568999999997
Q ss_pred CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcE
Q 013217 235 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK 314 (447)
Q Consensus 235 ~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 314 (447)
+|.|.|+++++++......+.+.+..........+++....+++..+++ ... ..+++.++++.+.+.|.+.|++
T Consensus 253 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~---~~~~~~~~~~~l~~~L~~~g~~ 326 (398)
T 3ele_A 253 PGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATG---DINAYKENRDLLYEGLTRIGYH 326 (398)
T ss_dssp TTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCC---CHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHH---HHHHHHHHHHHHHHHHHHcCCe
Confidence 5677799999874210001222222111111112233333333222222 111 3567788889999999888888
Q ss_pred eeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 315 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 315 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
+..+ ..+.++|+++.. .+..++.+.|.++||.++.+..++ .++.+|+++. ++ +++++++++.|.++
T Consensus 327 ~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~--~~----~e~i~~~l~~l~~~ 392 (398)
T 3ele_A 327 CFKP-DGAFYMFVKALE--DDSNAFCEKAKEEDVLIVAADGFG-----CPGWVRISYC--VD----REMIKHSMPAFEKI 392 (398)
T ss_dssp EECC-SBSSEEEEECSS--SCHHHHHHHHHTTTEECEESGGGT-----CTTEEEEECC--SC----HHHHHHHHHHHHHH
T ss_pred ecCC-CeeEEEEEEcCC--CCHHHHHHHHHHCCEEEeCccccC-----CCCeEEEEec--CC----HHHHHHHHHHHHHH
Confidence 7654 345557777653 367888889999999997543222 1468999974 44 89999999999988
Q ss_pred HHH
Q 013217 395 VEI 397 (447)
Q Consensus 395 l~~ 397 (447)
++.
T Consensus 393 l~~ 395 (398)
T 3ele_A 393 YKK 395 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 84
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.94 E-value=4.5e-26 Score=238.78 Aligned_cols=302 Identities=14% Similarity=0.116 Sum_probs=212.1
Q ss_pred HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217 70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 148 (447)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 148 (447)
.+++.+++++|++.+ +.+++|+ ++|.+++.++++|||+|++..+.|.+++.. .+...|.....++
T Consensus 177 e~e~~lA~~~gae~~-----i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~-------~~~l~Ga~~v~v~-- 242 (730)
T 1c4k_A 177 AAEKHAARVYNADKT-----YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS-------ALAMAGGRPVYLQ-- 242 (730)
T ss_dssp HHHHHHHHHTTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH-------HTTTTCCEEEEEC--
T ss_pred HHHHHHHHHHCCCcE-----EEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH-------HHHHCCCEEEEEe--
Confidence 456889999999852 3357887 899999999999999999999988776421 0334555333333
Q ss_pred cCCCC----CCCCHHHH-----HHHhhhhC-----C----cEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217 149 LDEST----GLVDYDML-----EKTAILFR-----P----KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISG 209 (447)
Q Consensus 149 ~~~~~----~~id~~~l-----~~~~~~~~-----~----klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g 209 (447)
.+.+. +.+|+++| ++++++.+ + |+|+++.+++.+ ..|+++|+++|+++|+++++|+||+.+
T Consensus 243 ~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~ 322 (730)
T 1c4k_A 243 TNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGY 322 (730)
T ss_dssp EEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCG
T ss_pred CCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEcccccc
Confidence 32122 34788888 88887621 4 888888777655 789999999999999999999999765
Q ss_pred ccccccC--CCCCC----ccc----EEEeCCCcccCCCCC-ceEEeecCCcch-hhH--HHHhhhccCCCCCCCCcHHHH
Q 013217 210 LVAASVV--ADPFK----YCD----VVTTTTHKSLRGPRG-GMIFFKKDPVLG-VEL--ESAINNAVFPGLQGGPHNHTI 275 (447)
Q Consensus 210 ~~~~~~~--~~~~~----~~D----i~~~s~~K~l~Gp~g-G~i~~~~~~~~~-~~~--~~~i~~~~~~~~~g~p~~~~~ 275 (447)
+...+.. ..++. ++| ++++|+||+|+|+++ |+++++++.... ..+ ..++.........++|+...+
T Consensus 323 ~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~i 402 (730)
T 1c4k_A 323 EQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMY 402 (730)
T ss_dssp GGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHH
T ss_pred cccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHH
Confidence 4332211 12221 467 999999999999986 788777641000 000 122222211223578899999
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH--CCcEeeeCCC---------------------------------
Q 013217 276 GGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGS--------------------------------- 320 (447)
Q Consensus 276 aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--------------------------------- 320 (447)
+++.+|++.+..++..+++++..++++.+++.|++ .|++++.+..
T Consensus 403 aal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (730)
T 1c4k_A 403 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYE 482 (730)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccc
Confidence 99999998776534577889999999999999988 7888754311
Q ss_pred ---CCe--e----EEecC----------CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCH
Q 013217 321 ---DNH--L----VLVDL----------RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE 381 (447)
Q Consensus 321 ---~~~--~----~~v~~----------~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~ 381 (447)
+++ + +++.. ...++++.++.+.|.++||.++.. ....+|+.++..+| +
T Consensus 483 ~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~---------~~~~ir~~~s~g~t----~ 549 (730)
T 1c4k_A 483 GYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS---------DLNSILFLMTPAET----P 549 (730)
T ss_dssp TCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE---------CSSEEEEECCTTCC----H
T ss_pred ccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC---------CCCeEEEEeCCCCC----H
Confidence 111 1 33444 223578899999999999988642 23579998887777 9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013217 382 KEFVAIADFIHEGVEIT 398 (447)
Q Consensus 382 ~di~~l~~~i~~~l~~~ 398 (447)
+|+++++++|.++.+..
T Consensus 550 e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 550 AKMNNLITQLLQLQRLI 566 (730)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887654
No 85
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.94 E-value=3.1e-25 Score=218.55 Aligned_cols=337 Identities=14% Similarity=0.131 Sum_probs=224.2
Q ss_pred hcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHH-HHHHHHHHHHHHcC--CCCCccceeeecCC
Q 013217 20 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE-LETLCQKRALAAFN--LDENKWGVNVQPLS 94 (447)
Q Consensus 20 ~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~-le~~~~~~~~~~~g--~~~~~~~~~v~~~s 94 (447)
+..|+|..+.+ ..++.+.+++...+.+. ..+|+.. ..+ +++...+++.+.+| ++++. |.+++
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~~lr~~la~~l~~~~g~~~~~~~----v~~t~ 94 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHG-VFGYSRW--------KNDEFLAAIAHWFSTQHYTAIDSQT----VVYGP 94 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCCCS--------CCHHHHHHHHHHHHHHSCCCCCGGG----EEEES
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCC-CCCCCCC--------ChHHHHHHHHHHHHHhcCCCCCHHH----EEEcC
Confidence 35678766665 35789999998877532 1233321 224 55555567777778 44442 33456
Q ss_pred cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhCCc
Q 013217 95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPK 171 (447)
Q Consensus 95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~~k 171 (447)
|+ +|+.+++.++++|||+|++..|.|.++.. .+...|. +++.++++++ ++.+|+++|++++++.+|+
T Consensus 95 g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~ 164 (390)
T 1d2f_A 95 SVIYMVSELIRQWSETGEGVVIHTPAYDAFYK--------AIEGNQR--TVMPVALEKQADGWFCDMGKLEAVLAKPECK 164 (390)
T ss_dssp CHHHHHHHHHHHSSCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECEECSSSEECCHHHHHHHHTSTTEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHH--------HHHHCCC--EEEEeecccCCCccccCHHHHHHHhccCCCe
Confidence 55 89999999999999999999988876531 2234454 4445555432 2469999999999755789
Q ss_pred EEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C-c-ccEEEeCCCccc--CCCCC
Q 013217 172 LIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-Y-CDVVTTTTHKSL--RGPRG 239 (447)
Q Consensus 172 lii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~-~-~Di~~~s~~K~l--~Gp~g 239 (447)
+|+++.++||+ ..+ +++|.++|+++|+++|+|++|..+ ...+....++ . . .|. +.|+||++ +|.|.
T Consensus 165 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~ 242 (390)
T 1d2f_A 165 IMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM-VWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTG 242 (390)
T ss_dssp EEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTC-BCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCC
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhh
Confidence 99888777775 444 789999999999999999998543 3222211111 1 1 277 99999987 46677
Q ss_pred ceEEeecCCcchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-C-CcEee
Q 013217 240 GMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLV 316 (447)
Q Consensus 240 G~i~~~~~~~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~ 316 (447)
|+++++++ ++.+.+..... ....++++....++...+++.. ...+++..+++.++++.+.+.|.+ . |+++.
T Consensus 243 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 316 (390)
T 1d2f_A 243 AYGIIENS-----SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAAFPELNWQ 316 (390)
T ss_dssp EEEEECSH-----HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred eEEEECCH-----HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe
Confidence 99998642 66666654332 1223455666666655667643 233567778888999999999987 3 77765
Q ss_pred eCCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 317 SGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 317 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
.+ ..+++.|+++...+.+..++.+.|. ++||.+..+..++ +..++.+|++++. + ++++++.++.|.+++
T Consensus 317 ~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~~Ris~~~--~----~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 317 IP-QSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG---EEGRGFVRLNAGC--P----RSKLEKGVAGLINAI 386 (390)
T ss_dssp CC-SBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC---GGGTTEEEEECCS--C----HHHHHHHHHHHHHHH
T ss_pred cC-CccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccC---CCCCCeEEEEecC--C----HHHHHHHHHHHHHHH
Confidence 43 3355567777543356778888887 6899996543221 1124689999764 3 688998888888877
Q ss_pred HH
Q 013217 396 EI 397 (447)
Q Consensus 396 ~~ 397 (447)
..
T Consensus 387 ~~ 388 (390)
T 1d2f_A 387 RA 388 (390)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 86
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.94 E-value=2.4e-25 Score=217.73 Aligned_cols=327 Identities=13% Similarity=0.047 Sum_probs=220.2
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .++.+.+++.+.+... ..+|+.. ....++++...+++.+.+|.+ ++.+ +.+++|
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~~~~~l~~~la~~~~~~~g~~~~~~~v---~~~~g~ 98 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEG-KTHYTDS------RGILELREKISELYKDKYKADIIPDNI---IITGGS 98 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHSSCCCCGGGE---EEESSH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcC-ccCCCCC------CCCHHHHHHHHHHHHHHhCCCCChhhE---EECCCh
Confidence 456888777764 4789999998877542 1233321 123456655566777666643 4322 223445
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217 96 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 175 (447)
Q Consensus 96 s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~ 175 (447)
++|+..++.++++|||+|++.++.|.++.. .+...|. +++.++ +|+++|++++++ ++++|++
T Consensus 99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~-------~d~~~l~~~l~~-~~~~v~~ 160 (370)
T 2z61_A 99 SLGLFFALSSIIDDGDEVLIQNPCYPCYKN--------FIRFLGA--KPVFCD-------FTVESLEEALSD-KTKAIII 160 (370)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEEC-------SSHHHHHHHCCS-SEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeC-------CCHHHHHHhccc-CceEEEE
Confidence 599999999999999999999998877532 2233443 444433 789999999976 8899888
Q ss_pred cCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CC---CcccEEEeCCCccc--CCCCCceEEeec
Q 013217 176 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSL--RGPRGGMIFFKK 246 (447)
Q Consensus 176 ~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~---~~~Di~~~s~~K~l--~Gp~gG~i~~~~ 246 (447)
+.++||+ ..+.+ |.++|+++|+++++|++|..+. ..+.... .+ ...|++++|+||++ +|.|.|++++++
T Consensus 161 ~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 238 (370)
T 2z61_A 161 NSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLV-YEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND 238 (370)
T ss_dssp ESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCB-SSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred cCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcc-cCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH
Confidence 8777764 77888 9999999999999999986543 2221111 11 14689999999998 456679999988
Q ss_pred CCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEE
Q 013217 247 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL 326 (447)
Q Consensus 247 ~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 326 (447)
++.+.+....... .++++....+++..+++.+....+++..+++.++++.+.+.|.+.|+++..+ ..++++|
T Consensus 239 ------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~ 310 (370)
T 2z61_A 239 ------EIIEAILKLQQNL-FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNP-IGAYYVF 310 (370)
T ss_dssp ------HHHHHHHHHHHHH-TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCC-CBTTEEC
T ss_pred ------HHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCC-CcceEEE
Confidence 6777665432222 1234554444444455431123356677888899999999998888877543 3355566
Q ss_pred ecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 327 VDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 327 v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+++.. +..++.+.|. ++||.+..+..++. ...+.+|++++ ++ +++++++++.|.++++
T Consensus 311 ~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~---~~~~~~Ri~~~--~~----~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 311 PNIGE---DGREFAYKLLKEKFVALTPGIGFGS---KGKNYIRISYA--NS----YENIKEGLERIKEFLN 369 (370)
T ss_dssp CBCSS---CHHHHHHHHHHHHCEECEEGGGGCG---GGSSBEEEECC--SC----HHHHHHHHHHHHHHHC
T ss_pred EecCC---CHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEEEe--CC----HHHHHHHHHHHHHHHh
Confidence 67653 5677888775 79999975422211 12458999987 44 8999999998887763
No 87
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.94 E-value=1.2e-25 Score=223.23 Aligned_cols=325 Identities=15% Similarity=0.137 Sum_probs=219.0
Q ss_pred eeEecCC-CCCCHHHHHHHhhhhhccCCCCCCCCc-ccC-c-hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHH
Q 013217 23 LELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKR-YYG-G-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 98 (447)
Q Consensus 23 i~l~~~~-n~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~-g-~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a 98 (447)
+.|..+. .+.|+.|++++.+.+.+.| +++... ++. + .+... .+++++++++|++++++ +.+++|+++
T Consensus 30 ~yld~~~~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~----~l~~~la~~~g~~~~~v---~~~~g~t~a 100 (416)
T 1qz9_A 30 IYLDGNSLGARPVAALARAQAVIAEEW--GNGLIRSWNSAGWRDLSE----RLGNRLATLIGARDGEV---VVTDTTSIN 100 (416)
T ss_dssp EECCTTTSCCCBTTHHHHHHHHHHTCC--CCCGGGHHHHTSGGGHHH----HHHHHHHTTTTCCTTSE---EECSCHHHH
T ss_pred EeecCCCcCCCcHHHHHHHHHHHHHHH--hccCccccchhhHHHHHH----HHHHHHHHHcCCCcccE---EEeCChhHH
Confidence 4444333 3568899999988886543 222211 111 1 12223 34578999999976533 223444578
Q ss_pred HHHHHHHhc------CCCCEEEE-ecCCCCcccCCCccccccccccc--cceeEEEecccCCCCCCCCHHHHHHHhhhhC
Q 013217 99 NFEVYTAIL------KPHDRIMG-LDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFR 169 (447)
Q Consensus 99 ~~~~~~al~------~pgd~Vl~-~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~ 169 (447)
+..++.+++ +|||+|++ .++.|+++...... ..... |. +++.+++ +++|++++++ +
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~----~~~~~~~g~--~~~~v~~--------~~~l~~~i~~-~ 165 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG----LADMLQQGY--TLRLVDS--------PEELPQAIDQ-D 165 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH----HHHHHCSSC--EEEEESS--------GGGHHHHCST-T
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHH----HHHHhcCCc--eEEEeCc--------HHHHHHHhCC-C
Confidence 877888776 89997554 44566654211000 00111 43 4444332 6888888876 8
Q ss_pred CcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCccc-CCCCC-ceEEee
Q 013217 170 PKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL-RGPRG-GMIFFK 245 (447)
Q Consensus 170 ~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l-~Gp~g-G~i~~~ 245 (447)
|++|++++++|++ ..|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+||++ +|+++ |+++++
T Consensus 166 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~~g~~~~g~l~~~ 242 (416)
T 1qz9_A 166 TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA---GADYAIGCTYKYLNGGPGSQAFVWVS 242 (416)
T ss_dssp EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEEEECSSSTTCCCTTCCCEEEEC
T ss_pred ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhc---CCCEEEecCcccCCCCCCCeEEEEEC
Confidence 9999998777764 789999999999999999999999766442211110 3799999999997 57888 999998
Q ss_pred cCCcchhhHHHHhhhccC----------------------CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217 246 KDPVLGVELESAINNAVF----------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 303 (447)
Q Consensus 246 ~~~~~~~~~~~~i~~~~~----------------------~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~ 303 (447)
+ ++.+.+..... ....|+++...++++.++++.+...++++..+++.+++++
T Consensus 243 ~------~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 316 (416)
T 1qz9_A 243 P------QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDL 316 (416)
T ss_dssp T------TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred H------HHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7 44443332110 0124567888888888888887656778889999999999
Q ss_pred HHHHHHHC----CcEeeeCCC---CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCc-cc
Q 013217 304 LASRLVEL----GYKLVSGGS---DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA-MT 375 (447)
Q Consensus 304 l~~~L~~~----g~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~-~~ 375 (447)
+.+.|.+. |+++..+.. ..+++++.+. +..++.+.|.++||.+... ..+.+|++++. .+
T Consensus 317 l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~~~~~---------~~~~lRis~~~~~~ 383 (416)
T 1qz9_A 317 FIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP----EGYAVIQALIDRGVIGDYR---------EPRIMRFGFTPLYT 383 (416)
T ss_dssp HHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT----THHHHHHHHHTTTEECEEE---------TTTEEEEECCTTTC
T ss_pred HHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC----CHHHHHHHHHhCCcEeccC---------CCCeEEEeCcccCC
Confidence 99999885 888765421 2445666654 3677888888899987421 24589999873 66
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 013217 376 TRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 376 ~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+ ++|++++++.|+++++.
T Consensus 384 t----~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 384 T----FTEVWDAVQILGEILDR 401 (416)
T ss_dssp C----HHHHHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHHHhc
Confidence 6 99999999999998764
No 88
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.94 E-value=1.2e-25 Score=223.91 Aligned_cols=346 Identities=11% Similarity=0.054 Sum_probs=230.3
Q ss_pred HhhcCeeEecCCCC--CCHHHHHHHhhhhhccC-CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCC
Q 013217 18 RQFKSLELIASENF--TSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS 94 (447)
Q Consensus 18 ~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~-~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~s 94 (447)
...+.|+|..+++. +++.+.+++...+.... ..+|+.. .....+++...+++.+.+|.+.+.- -+|.+++
T Consensus 26 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~~~~~~g~~~~~~-~~i~~~~ 98 (422)
T 3fvs_A 26 SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT------FGYPPLTKILASFFGELLGQEIDPL-RNVLVTV 98 (422)
T ss_dssp HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT------TCCHHHHHHHHHHHHHHHTCCCCHH-HHEEEES
T ss_pred hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC------CCCHHHHHHHHHHHHHhhCCCCCCC-CcEEEEC
Confidence 34577888877764 68999999988876532 1233332 1123455555677888888653210 0233355
Q ss_pred cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-----------CCCCCCHHHHH
Q 013217 95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-----------STGLVDYDMLE 162 (447)
Q Consensus 95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~id~~~l~ 162 (447)
|+ +|+..++.++++|||+|++..|.|.++.. .+...|. +++.+++++ .++.+|+++++
T Consensus 99 g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~ 168 (422)
T 3fvs_A 99 GGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGG--RPVFVSLKPGPIQNGELGSSSNWQLDPMELA 168 (422)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECBCCCCCSSSCCBGGGSBCCHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCEEEEcCCCchhhHH--------HHHHcCC--EEEEEecccccccccccccccCCCCCHHHHH
Confidence 55 99999999999999999999998876531 2334454 444544543 24568999999
Q ss_pred HHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC------cccEEEeCCC
Q 013217 163 KTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTH 231 (447)
Q Consensus 163 ~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~------~~Di~~~s~~ 231 (447)
+++++ ++++|+++.++||+ .. ++++|.++|+++|+++|+|++|. ++...+..+.++. ..++++.|+|
T Consensus 169 ~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~s 246 (422)
T 3fvs_A 169 GKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ-WMVYDGHQHISIASLPGMWERTLTIGSAG 246 (422)
T ss_dssp TTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSTTTGGGEEEEEEHH
T ss_pred hhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccch-hhccCCCCCCChhhcccccCcEEEEecch
Confidence 99986 89999988888775 44 58999999999999999999974 3333332221211 2458889999
Q ss_pred ccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH------hcChhHHHHHHHHHHHHHH
Q 013217 232 KSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH------AQSPEFKVYQNKVVSNCRA 303 (447)
Q Consensus 232 K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~------~~~~~~~~~~~~~~~~~~~ 303 (447)
|++ +|.|.|++++++ ++.+.+........ .+++....+++..+++. .....+++..+++.++++.
T Consensus 247 K~~g~~G~r~G~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (422)
T 3fvs_A 247 KTFSATGWKVGWVLGPD------HIMKHLRTVHQNSV-FHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDH 319 (422)
T ss_dssp HHHTCGGGCCEEEECCH------HHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHH
T ss_pred hccCCccceEEEEEeCH------HHHHHHHHHHhhcc-CCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHH
Confidence 997 467779999987 67666654322222 23455555556666664 1233457788899999999
Q ss_pred HHHHHHHCCcEeeeCCCCCeeEEecCCCCC--CC----------HHHHHH-HHhhcCeEEccCCCCCCC--CCCCCCeEE
Q 013217 304 LASRLVELGYKLVSGGSDNHLVLVDLRPMG--ID----------GARVEK-ILDMASITLNKNSVPGDK--SALVPGGIR 368 (447)
Q Consensus 304 l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~--~~----------~~~~~~-~L~~~gI~v~~~~~p~~~--~~~~~~~iR 368 (447)
+.+.|.+.|+++..+ ...++.|+++...+ .+ ..++.. .|+++||.+..+...+.. .+...+.+|
T Consensus 320 l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iR 398 (422)
T 3fvs_A 320 MIRSLQSVGLKPIIP-QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIR 398 (422)
T ss_dssp HHHHHHTTTCEEEBC-SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEE
T ss_pred HHHHHHHcCCeecCC-CeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEE
Confidence 999999989887654 34566777764211 00 334444 567789998754322110 112356899
Q ss_pred EecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 369 IGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 369 ig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+++.. + ++++++.++.|+++++
T Consensus 399 is~~~--~----~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 399 FCFVK--D----EATLQAMDEKLRKWKV 420 (422)
T ss_dssp EECCC--C----HHHHHHHHHHHHHHHH
T ss_pred EEecC--C----HHHHHHHHHHHHHHHh
Confidence 99654 4 9999999999988775
No 89
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.94 E-value=5.7e-26 Score=223.91 Aligned_cols=331 Identities=14% Similarity=0.129 Sum_probs=222.7
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
+.|+|.. ...|+.+++++...+.+.+ + ...+...+++ +.+++++|.+. .+.+++|++|+.
T Consensus 9 ~~i~~~~--p~~~~~~~~a~~~~~~~~~---~------~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~al~ 68 (393)
T 1mdo_A 9 DFLPFSR--PAMGAEELAAVKTVLDSGW---I------TTGPKNQELE----AAFCRLTGNQY-----AVAVSSATAGMH 68 (393)
T ss_dssp CCBCSCC--CCCCHHHHHHHHHHHHHTC---C------SSSHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHH
T ss_pred cccccCC--CCCCHHHHHHHHHHHhcCC---c------CCChHHHHHH----HHHHHHhCCCc-----EEEecChHHHHH
Confidence 3456543 4478899999988876532 1 1123334444 67888998763 244577889999
Q ss_pred HHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217 101 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 179 (447)
Q Consensus 101 ~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~ 179 (447)
.++.++ ++|||+|++.++.|.++.. .+...|. +++.++++++++.+|++++++++++ +|++|++++ .
T Consensus 69 ~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~-~ 136 (393)
T 1mdo_A 69 IALMALGIGEGDEVITPSMTWVSTLN--------MIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH-Y 136 (393)
T ss_dssp HHHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-G
T ss_pred HHHHHcCCCCCCEEEeCCCccHhHHH--------HHHHCCC--EEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC-C
Confidence 999999 9999999999998877532 2334454 5566667655678999999999986 889988764 2
Q ss_pred CCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHH
Q 013217 180 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESA 257 (447)
Q Consensus 180 ~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~ 257 (447)
++...++++|.++|+++|+++++|++|+.|....+. +... .|++++|+| |+++|++||+++++++ ++.++
T Consensus 137 ~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~~~--~d~~~~S~~k~K~l~~~~~g~~~~~~~-----~~~~~ 208 (393)
T 1mdo_A 137 AGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGR-HIGA--RGTAIFSFHAIKNITCAEGGIVVTDNP-----QFADK 208 (393)
T ss_dssp GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE-ETTS--SSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHH
T ss_pred CCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCe-ecCC--CCeEEEeCCCCCccccccceEEEeCCH-----HHHHH
Confidence 334679999999999999999999999877654321 1111 799999999 9998889999998742 56665
Q ss_pred hhhccCCC--------------------CCCC-CcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEee
Q 013217 258 INNAVFPG--------------------LQGG-PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV 316 (447)
Q Consensus 258 i~~~~~~~--------------------~~g~-p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 316 (447)
+......+ ..|. .....+++ +.++..+ .++++..++..++++++.+.|.+.++++.
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 285 (393)
T 1mdo_A 209 LRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNA-AIALAQL--QKLDALNARRAAIAAQYHQAMADLPFQPL 285 (393)
T ss_dssp HHHHTBTTEECC-----------CCEESSCCCBCCCCHHHH-HHHHHHH--HTHHHHHHHHHHHHHHHHHHHHTSSCEEC
T ss_pred HHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 54321111 0111 01111211 1122222 23566777888899999999988777764
Q ss_pred eCC-----CCCeeEEecCCCC--CCCHHHHHHHHhhcCeEEccCCCCCCC----------CCC------CCCeEEEecCc
Q 013217 317 SGG-----SDNHLVLVDLRPM--GIDGARVEKILDMASITLNKNSVPGDK----------SAL------VPGGIRIGSPA 373 (447)
Q Consensus 317 ~~~-----~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~~~~p~~~----------~~~------~~~~iRig~~~ 373 (447)
... ...+++++.+... +.+..++.+.|.++||.++.+..|... ... ....+|++++.
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~ 365 (393)
T 1mdo_A 286 SLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFP 365 (393)
T ss_dssp CCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCT
T ss_pred cCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCC
Confidence 311 2234567776420 356788999999999999765433100 001 12479999887
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 374 MTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 374 ~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
.++ ++|+++++++|++++...
T Consensus 366 ~~t----~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 366 DMT----ESDFDRVITALHQIAGQG 386 (393)
T ss_dssp TCC----HHHHHHHHHHHHHHHC--
T ss_pred CCC----HHHHHHHHHHHHHHHhcC
Confidence 777 999999999999887654
No 90
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.94 E-value=8.6e-25 Score=220.94 Aligned_cols=300 Identities=16% Similarity=0.135 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh----cCCCC-----EEEEecCCCCcccCCCccccccc
Q 013217 64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----LKPHD-----RIMGLDLPHGGHLSHGFMTPKRR 134 (447)
Q Consensus 64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al----~~pgd-----~Vl~~~~~~~~~~~~~~~~~~~~ 134 (447)
..+++...++++++++|++. ..+.+++|++|+.+++.++ .++|| +|+++.+.|+++.. .
T Consensus 105 ~~~l~~~l~~~la~~~g~~~----~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~--------~ 172 (474)
T 1wyu_B 105 ALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPA--------T 172 (474)
T ss_dssp HHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHH--------H
T ss_pred HHHHHHHHHHHHHHHHCCCc----eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHH--------H
Confidence 44555667789999999875 2344566778888766554 46888 99999988876542 2
Q ss_pred cccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-C-CChHHHHHHHHHhCCEEEEehhhhccccc
Q 013217 135 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-D-FDYPRMRQIADAVGALLMMDMAHISGLVA 212 (447)
Q Consensus 135 ~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~-~~~~~i~~ia~~~g~~livD~a~~~g~~~ 212 (447)
+...|. +++.++++ +++.+|+++|++++++ ++++|+++.+|+.+ . .++++|+++|+++|+++++|++|..+..
T Consensus 173 ~~~~G~--~vv~v~~~-~~~~~d~~~L~~~i~~-~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~- 247 (474)
T 1wyu_B 173 ASMAGY--QVREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIM- 247 (474)
T ss_dssp HHHTTC--EEEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT-
T ss_pred HHHCCC--EEEEecCC-CCCCcCHHHHHHhhCC-CceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhc-
Confidence 344554 55566665 4688999999999986 78999998776555 4 5899999999999999999999866543
Q ss_pred cccCCCCCC-cccEEEeCCCcccCCC------CCceEEeecCCcchhhHHHHhhhc-c------------CC-----CCC
Q 013217 213 ASVVADPFK-YCDVVTTTTHKSLRGP------RGGMIFFKKDPVLGVELESAINNA-V------------FP-----GLQ 267 (447)
Q Consensus 213 ~~~~~~~~~-~~Di~~~s~~K~l~Gp------~gG~i~~~~~~~~~~~~~~~i~~~-~------------~~-----~~~ 267 (447)
+.. .+.. ++|++++|+||+|++| +.|++++++ ++.+.+... . .+ ...
T Consensus 248 -g~~-~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~------~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~ 319 (474)
T 1wyu_B 248 -GWA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA------HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRS 319 (474)
T ss_dssp -TTC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECG------GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSS
T ss_pred -cCC-CcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcH------HHHHhCCCCeeeccCCeeEecccCcccCccccc
Confidence 111 1111 4899999999998755 459999988 554544310 0 00 011
Q ss_pred CCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcC
Q 013217 268 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 347 (447)
Q Consensus 268 g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~g 347 (447)
++++...+++....+..+..+++++..++..++++++.+.|++.|+++..++...+.+++++ +.+.+..++.+.|.++|
T Consensus 320 ~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~G 398 (474)
T 1wyu_B 320 FYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQP-PEGFRALDLAKGLLELG 398 (474)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBC-STTCCHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEc-CCCCCHHHHHHHHHHCC
Confidence 22344333333334443333456777889999999999999988887744322223356676 34567788999898889
Q ss_pred eEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 348 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 348 I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
|.+.....| ....+.+|++++..++ ++|++++++.|++++..
T Consensus 399 i~~~~~~~~----~~~~~~lRis~~~~~t----~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 399 FHPPTVYFP----LIVKEALMVEPTETEA----KETLEAFAEAMGALLKK 440 (474)
T ss_dssp CCCCEESCS----TTSTTCEEECCCTTSC----HHHHHHHHHHHHHHHTS
T ss_pred ccccccccc----cccCCEEEEEeecCCC----HHHHHHHHHHHHHHHHh
Confidence 975321111 1124679999887777 99999999999988764
No 91
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.94 E-value=1.2e-25 Score=222.80 Aligned_cols=339 Identities=16% Similarity=0.064 Sum_probs=223.3
Q ss_pred hcCeeEecCCC-----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeec
Q 013217 20 FKSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQP 92 (447)
Q Consensus 20 ~~~i~l~~~~n-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~ 92 (447)
+..|+|..+++ ..++.+.+++...+.+.+ .+|+.. ....++++...+++.+.+|.+ ++ .|.+
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~l~~~la~~l~~~~g~~~~~~----~v~~ 106 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYGDS------EGLPELRKAIVEREKRKNGVDITPD----DVRV 106 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGG----GEEE
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCcHHHHHHHHHHHHHhcCCCCCHH----HEEE
Confidence 45688877776 457899999988775422 233321 223456655566777766654 33 2333
Q ss_pred CCc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhhCC
Q 013217 93 LSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRP 170 (447)
Q Consensus 93 ~sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~~~ 170 (447)
++| ++|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++ +++.+|+++|++++++ ++
T Consensus 107 t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~ 175 (406)
T 1xi9_A 107 TAAVTEALQLIFGALLDPGDEILVPGPSYPPYTG--------LVKFYGG--KPVEYRTIEEEDWQPDIDDIRKKITD-RT 175 (406)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEEEEGGGTSEECHHHHHHHCCT-TE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEeecCCCcCCcCCHHHHHHhhCc-Cc
Confidence 555 599999999999999999999998866431 2234454 444555553 3567899999999987 89
Q ss_pred cEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----Ccc-cEEEeCCCcccC--CCC
Q 013217 171 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KYC-DVVTTTTHKSLR--GPR 238 (447)
Q Consensus 171 klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----~~~-Di~~~s~~K~l~--Gp~ 238 (447)
++|+++.++||+ ..+ +++|.++|+++|+++++|++|..+. ..+. ..++ ... |++++|+||+++ |.|
T Consensus 176 ~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~-~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 253 (406)
T 1xi9_A 176 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMT-YEGE-HISPGSLTKDVPVIVMNGLSKVYFATGWR 253 (406)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB-SSSC-CCCHHHHCSSSCEEEEEESTTTTCCGGGC
T ss_pred eEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccc-cCCC-CCCHHHcCCCceEEEEeccccccCCCccE
Confidence 998888777764 444 8999999999999999999986543 2211 1111 235 789999999984 666
Q ss_pred CceEE--eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEe
Q 013217 239 GGMIF--FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL 315 (447)
Q Consensus 239 gG~i~--~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 315 (447)
.|+++ .+++. ..++.+.+....... .+++....+++..+++.. ..+.++..+++.++++.+.+.|.+. |+++
T Consensus 254 ~G~~~~~~~~~~--~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 328 (406)
T 1xi9_A 254 LGYMYFVDPENK--LSEVREAIDRLARIR--LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGIST 328 (406)
T ss_dssp CEEEEEECTTCT--THHHHHHHHHHHHHT--CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred EEEEEEecCchh--HHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 79988 55410 002444443322111 233444455555566533 3346777888889999999999885 7776
Q ss_pred eeCCCCCeeEEecCCCC-CCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 316 VSGGSDNHLVLVDLRPM-GIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 316 ~~~~~~~~~~~v~~~~~-~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
..+ ..+.+.|+++... +.+..++.+.|. ++||.+..+...+. ...+.+|++++ ++ +++++++++.|.+
T Consensus 329 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~lRis~~--~~----~~~i~~~~~~l~~ 398 (406)
T 1xi9_A 329 TKP-QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE---YGAGHFRAVFL--PP----IEILEEAMDRFEK 398 (406)
T ss_dssp CCC-CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG---GGTTBEEEECC--SC----HHHHHHHHHHHHH
T ss_pred ecC-CeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC---CCCCEEEEEec--CC----HHHHHHHHHHHHH
Confidence 543 2345555565431 346777877775 89999865422211 12458999986 44 8999999999988
Q ss_pred HHHH
Q 013217 394 GVEI 397 (447)
Q Consensus 394 ~l~~ 397 (447)
+++.
T Consensus 399 ~l~~ 402 (406)
T 1xi9_A 399 FMKE 402 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 92
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.94 E-value=7e-25 Score=223.99 Aligned_cols=303 Identities=11% Similarity=0.061 Sum_probs=218.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCCC--CccceeeecCCcHHHHHHHHHHhcCCC--------CEEEEecCCCCcccCCCcccc
Q 013217 62 EYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPANFEVYTAILKPH--------DRIMGLDLPHGGHLSHGFMTP 131 (447)
Q Consensus 62 ~~~~~le~~~~~~~~~~~g~~~--~~~~~~v~~~sGs~a~~~~~~al~~pg--------d~Vl~~~~~~~~~~~~~~~~~ 131 (447)
.....+|+..++++++++|++. +.+ ..+.+++|++|+..++.++.++| |+|++..+.|.++.
T Consensus 135 p~~~~le~~l~~~la~~~g~~~~~~~v-~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~------- 206 (514)
T 3mad_A 135 PSTAKFEAEVVAMTAHMLGGDAAGGTV-CGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD------- 206 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGGTSCC-EEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH-------
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccCCc-ceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH-------
Confidence 3456777778889999999883 322 11344666799999999998777 99999998887643
Q ss_pred ccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217 132 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISG 209 (447)
Q Consensus 132 ~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g 209 (447)
+.+...|. +++.+++++ ++.+|+++|++++++ +|++|+++.++|++ ..|+++|.++|+++|+++++|++|..+
T Consensus 207 -~~~~~~G~--~v~~v~~~~-~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~ 281 (514)
T 3mad_A 207 -KAAQYFGI--KLVRTPLDA-DYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGF 281 (514)
T ss_dssp -HHHHHHTC--EEEEECBCT-TSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred -HHHHHcCC--eeEEeeeCC-CCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccc
Confidence 13344565 455555663 788999999999987 89999998777754 789999999999999999999998654
Q ss_pred ccc----ccc----CCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhc----------cCCCCCCCC
Q 013217 210 LVA----ASV----VADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA----------VFPGLQGGP 270 (447)
Q Consensus 210 ~~~----~~~----~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~----------~~~~~~g~p 270 (447)
... .+. ......++|++++|+||++.||.+ |++++++ +........ ..+...|++
T Consensus 282 ~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~gs~ 355 (514)
T 3mad_A 282 ILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRR------PDLLHYQYFIAADWPGGLYFSPTFAGSR 355 (514)
T ss_dssp THHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESS------HHHHTTTCEEESSCTTCSEEESSSCSSC
T ss_pred cchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeC------HHHhccccccccccCCCcccCCccCCCC
Confidence 331 111 011112689999999999766665 9998887 333222110 112335667
Q ss_pred cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeE
Q 013217 271 HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASIT 349 (447)
Q Consensus 271 ~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~ 349 (447)
+...+++++++++.+...+++++.+++.++++++.+.|.+. |++++.+. ..++++.. .+.+..++.+.|.++||.
T Consensus 356 ~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~--~~~~~~~l~~~L~~~Gi~ 431 (514)
T 3mad_A 356 PGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVAS--DELNIYQVMEEMAGRGWR 431 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEEC--SSSCHHHHHHHHHTTTCB
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeC--CCCCHHHHHHHHHhcCCE
Confidence 77767777888887766678889999999999999999984 88877543 33444443 345778899999999998
Q ss_pred EccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 350 LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 350 v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+.... .+..+|++....++ ++++++++++.|++++...
T Consensus 432 v~g~~--------~~~~~Ri~~~~~~~---~~e~i~~~l~~L~~~l~~~ 469 (514)
T 3mad_A 432 LNGLH--------RPPAFHVALTLRHT---EPGVVDRFLADLQDAVAQV 469 (514)
T ss_dssp CEEET--------TTTEEEEECCGGGG---STTHHHHHHHHHHHHHHHH
T ss_pred eccCC--------CCCeEEEEEecCCC---CHHHHHHHHHHHHHHHHHH
Confidence 73211 13579998775543 3799999999999998754
No 93
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.94 E-value=1.8e-25 Score=227.63 Aligned_cols=311 Identities=14% Similarity=0.073 Sum_probs=208.7
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCCC-ccceeeecCCcHHHHHHHHHHhcC--------------CCCEEEEecCCCCccc
Q 013217 60 GNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANFEVYTAILK--------------PHDRIMGLDLPHGGHL 124 (447)
Q Consensus 60 g~~~~~~le~~~~~~~~~~~g~~~~-~~~~~v~~~sGs~a~~~~~~al~~--------------pgd~Vl~~~~~~~~~~ 124 (447)
..+...++|+.+.+|+++++|++.+ .. .+.+++||+||..++.++.. |++.|+++...|.+..
T Consensus 129 ~~p~~~~le~~~~~~l~~~~g~~~~~~~--~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~ 206 (511)
T 3vp6_A 129 IAPVFVLMEQITLKKMREIVGWSSKDGD--GIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK 206 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSSSCE--EEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCCCc--eEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH
Confidence 3456678999999999999999842 22 34456677999888877643 6789999988776643
Q ss_pred CCCcccccccccccccee-EEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEcCCCCC-C-CCChHHHHHHHHHh
Q 013217 125 SHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASAYP-R-DFDYPRMRQIADAV 196 (447)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~~~~~~-----~klii~~~~~~~-~-~~~~~~i~~ia~~~ 196 (447)
+.+...|.+. +++.++++ +++.+|+++|++++++.+ |++|+++.++++ + ..|+++|+++|++|
T Consensus 207 --------~~~~~~g~g~~~~~~v~~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~ 277 (511)
T 3vp6_A 207 --------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY 277 (511)
T ss_dssp --------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHH
T ss_pred --------HHHHHcCCCCCcEEEeecC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHc
Confidence 2334555422 44455566 468999999999997632 888888755544 3 78999999999999
Q ss_pred CCEEEEehhhhccccccccCCC---CCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCC-------
Q 013217 197 GALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPG------- 265 (447)
Q Consensus 197 g~~livD~a~~~g~~~~~~~~~---~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~------- 265 (447)
|+|+++|++|+.|.+..+.+.. .+.++|++++++||||.+|.| |+++++++ .+.........++
T Consensus 278 ~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~-----~~~~~~~~~~~~yl~~~~~~ 352 (511)
T 3vp6_A 278 NLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK-----GILQGCNQMHASYLFQQDKH 352 (511)
T ss_dssp TCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST-----THHHHHHCCCCTTTCCSSCS
T ss_pred CCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH-----HHHHHHhccCCccccCcccc
Confidence 9999999999877664432221 123579999999999998887 88888875 4433321110000
Q ss_pred -----------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeC-CCCCeeEEecCCCC
Q 013217 266 -----------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG-GSDNHLVLVDLRPM 332 (447)
Q Consensus 266 -----------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~-~~~~~~~~v~~~~~ 332 (447)
.+++.. ....+++.+++.+...+++++.++..++++++++.|++ .|++++.+ .....++.+.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~ 431 (511)
T 3vp6_A 353 YDVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQ 431 (511)
T ss_dssp SCGGGCCGGGSSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCG
T ss_pred cccccCccCCCCCCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCc
Confidence 111111 12445666777666677899999999999999999988 49998862 12233334433332
Q ss_pred CCC---------------HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHHHHHHHHHH
Q 013217 333 GID---------------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 333 ~~~---------------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
+++ ..++.+.|.+.|+.+-. ..|.. ...+.+|+++ +..++ ++|++++++.|.++-
T Consensus 432 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~~---~~~~~lRi~~~~~~~t----~~di~~ll~~i~~~~ 502 (511)
T 3vp6_A 432 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQG---DKANFFRMVISNPAAT----QSDIDFLIEEIERLG 502 (511)
T ss_dssp GGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEET---TEEEEEEECCCCTTCC----HHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEeC---CceEEEEEEecCCCCC----HHHHHHHHHHHHHHH
Confidence 221 23577788787864321 11111 0123599998 56666 999999999887653
No 94
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.94 E-value=7e-25 Score=218.78 Aligned_cols=338 Identities=15% Similarity=0.091 Sum_probs=224.2
Q ss_pred cCeeEecCCC------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC-----CCCCcccee
Q 013217 21 KSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-----LDENKWGVN 89 (447)
Q Consensus 21 ~~i~l~~~~n------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g-----~~~~~~~~~ 89 (447)
..|+|..+.. ++++.|++++...+......+|+.. ....+++ +.++++++ ++++.+
T Consensus 55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr----~~la~~~~~~~~~~~~~~v--- 121 (427)
T 3dyd_A 55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPS------IGFLSSR----EEIASYYHCPEAPLEAKDV--- 121 (427)
T ss_dssp CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCT------TCCHHHH----HHHHHHHCBTTBCCCGGGE---
T ss_pred CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCC------CCcHHHH----HHHHHHHhhcCCCCChHHE---
Confidence 3488865552 5689999999888765333344332 1123444 45666776 455432
Q ss_pred eecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhhh
Q 013217 90 VQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF 168 (447)
Q Consensus 90 v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~~ 168 (447)
+.+++|++|+..++.++++|||+|++..|.|.++.. .+...|. +++.+++++ +++.+|++++++.+++
T Consensus 122 ~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~- 190 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT--------LAESMGI--EVKLYNLLPEKSWEIDLKQLEYLIDE- 190 (427)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHSSCCT-
T ss_pred EEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHhcc-
Confidence 333455699999999999999999999998876532 2334454 444444543 4568999999999977
Q ss_pred CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cc---cEEEeCCCccc--CC
Q 013217 169 RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YC---DVVTTTTHKSL--RG 236 (447)
Q Consensus 169 ~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~---Di~~~s~~K~l--~G 236 (447)
++++|++..++||+ ..+ +++|+++|+++|+++++|++|. ++...+....++. .. .+++.|+||++ +|
T Consensus 191 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~-~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G 269 (427)
T 3dyd_A 191 KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYG-DMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG 269 (427)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTT-TCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCch-hhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC
Confidence 78988888777775 667 8999999999999999999974 4443332121221 12 26788999974 56
Q ss_pred CCCceEEeecCCcch-hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcE
Q 013217 237 PRGGMIFFKKDPVLG-VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK 314 (447)
Q Consensus 237 p~gG~i~~~~~~~~~-~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 314 (447)
.|.|+++++++.... .++.+.+...... ..+++....+++..+++.....++++..+++.++++.+.+.|++. |+.
T Consensus 270 ~riG~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 347 (427)
T 3dyd_A 270 WRLGWILIHDRRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLR 347 (427)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred cceEEEEecCcchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 778999988531100 1344444332111 134566666666667775443456788889999999999999985 887
Q ss_pred eeeCCCCCeeEEecCCC----CCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217 315 LVSGGSDNHLVLVDLRP----MGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD 389 (447)
Q Consensus 315 ~~~~~~~~~~~~v~~~~----~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~ 389 (447)
++.+ ....++|+.+.. .+.+..++.+.| +++||.+..+..++ .++.+|+++. ++ +++++++++
T Consensus 348 ~~~p-~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~-----~~~~iRis~~--~~----~e~i~~~l~ 415 (427)
T 3dyd_A 348 PVRP-SGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE-----YPNFIRVVIT--VP----EVMMLEACS 415 (427)
T ss_dssp EECC-SBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEESC--SC----HHHHHHHHH
T ss_pred ecCC-CeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC-----CCCeEEEEEC--CC----HHHHHHHHH
Confidence 7644 334556665531 124556666655 68999996543222 2468999964 34 899999999
Q ss_pred HHHHHHHH
Q 013217 390 FIHEGVEI 397 (447)
Q Consensus 390 ~i~~~l~~ 397 (447)
.|.++++.
T Consensus 416 ~l~~~l~~ 423 (427)
T 3dyd_A 416 RIQEFCEQ 423 (427)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 95
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.94 E-value=7.9e-26 Score=223.63 Aligned_cols=330 Identities=18% Similarity=0.143 Sum_probs=219.6
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
..|+|..+++..++.+++++.+.+.+. +| ...+...+++ +.+++++|.+. .+.+++|++|+.
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~--------~y-~~~~~~~~l~----~~la~~~~~~~-----~v~~~~Gt~a~~ 92 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG--------RY-LLGPELEGFE----AEFAAYCETDH-----AVGVNSGMDALQ 92 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT--------CC-SSSHHHHHHH----HHHHHHTTSSE-----EEEESCHHHHHH
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC--------CC-CCchhHHHHH----HHHHHHHCCCe-----EEEecCHHHHHH
Confidence 457777777777799999998877541 11 1123334444 67889999862 355688999999
Q ss_pred HHHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC
Q 013217 101 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 179 (447)
Q Consensus 101 ~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~ 179 (447)
.++.++ ++|||+|++.++.|.++.. .+...|. +++.++++++++.+|++++++++++ ++++|+++++
T Consensus 93 ~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n~- 160 (399)
T 2oga_A 93 LALRGLGIGPGDEVIVPSHTYIASWL--------AVSATGA--TPVPVEPHEDHPTLDPLLVEKAITP-RTRALLPVHL- 160 (399)
T ss_dssp HHHHHTTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCSSSSSBCHHHHHHHCCT-TEEEECCBCG-
T ss_pred HHHHHhCCCCcCEEEECCCccHHHHH--------HHHHCCC--EEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEEeCC-
Confidence 999999 8999999999998876532 2334454 5556666655678999999999987 7888876432
Q ss_pred CCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCC--CcccCCC-CCceEEeecCCcchhhHH
Q 013217 180 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT--HKSLRGP-RGGMIFFKKDPVLGVELE 255 (447)
Q Consensus 180 ~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~--~K~l~Gp-~gG~i~~~~~~~~~~~~~ 255 (447)
++...|+++|.++|+++|+++|+|++|+.|....+. . +. ..|++++|+ +|+++++ +||+++++++ ++.
T Consensus 161 tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~--~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~-----~~~ 232 (399)
T 2oga_A 161 YGHPADMDALRELADRHGLHIVEDAAQAHGARYRGR-R--IGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDP-----ELA 232 (399)
T ss_dssp GGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTE-E--TTCTTCEEEEECCTTSSSCCSSCCEEEEESCH-----HHH
T ss_pred cCCccCHHHHHHHHHHcCCEEEEECcccccCccCCe-e--cccccCEEEEeCCCCccCCcCCceEEEEeCCH-----HHH
Confidence 233779999999999999999999999777543221 1 11 269999999 4998653 7899888743 666
Q ss_pred HHhhhccCCC-----------CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCe
Q 013217 256 SAINNAVFPG-----------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNH 323 (447)
Q Consensus 256 ~~i~~~~~~~-----------~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 323 (447)
+++......+ ...+++....++...+++. +++..++..++++++.+.|.+. |+++...+....
T Consensus 233 ~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~ 307 (399)
T 2oga_A 233 ERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTD 307 (399)
T ss_dssp HHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEE
T ss_pred HHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCc
Confidence 6554422221 1113344444433334432 3455677778888888888874 776643222222
Q ss_pred eEEecCCCCCCCHHHHHHHHhhcCeEEccCC-CCCCC-----------CCC------CCCeEEEecCccccCCCCHHHHH
Q 013217 324 LVLVDLRPMGIDGARVEKILDMASITLNKNS-VPGDK-----------SAL------VPGGIRIGSPAMTTRGFSEKEFV 385 (447)
Q Consensus 324 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~-~p~~~-----------~~~------~~~~iRig~~~~~~~g~~~~di~ 385 (447)
..|+.+.....+..++.+.|.++||.++..+ .|.+. ... ..+.+|++++..++ ++|++
T Consensus 308 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t----~edi~ 383 (399)
T 2oga_A 308 PVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLE----RPQAL 383 (399)
T ss_dssp CCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCC----HHHHH
T ss_pred ceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCC----HHHHH
Confidence 2222221112257789999999999987532 11000 000 01479999888777 99999
Q ss_pred HHHHHHHHHHHH
Q 013217 386 AIADFIHEGVEI 397 (447)
Q Consensus 386 ~l~~~i~~~l~~ 397 (447)
+++++|++++..
T Consensus 384 ~~~~~l~~~~~~ 395 (399)
T 2oga_A 384 RVIDAVREWAER 395 (399)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 96
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.94 E-value=9.8e-26 Score=223.33 Aligned_cols=335 Identities=15% Similarity=0.103 Sum_probs=224.7
Q ss_pred cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--C-CccceeeecCCc
Q 013217 21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--E-NKWGVNVQPLSG 95 (447)
Q Consensus 21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~-~~~~~~v~~~sG 95 (447)
..|+|..+++. .++.+++++.+.+.+....+|+.. ....++++...+++++.+|.+ + +. |.+++|
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~~~----v~~t~G 117 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAF------HGKEAFKQAIVDFYQRQYNVTLDKEDE----VCILYG 117 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCCCTTTS----EEEESS
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCCccc----EEEcCC
Confidence 35788777774 478999999887643111133321 112456655556777777975 2 32 333555
Q ss_pred -HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217 96 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 96 -s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii 174 (447)
++|+..++.++++|||+|++..|.|.++.. .+...|. +++.++++++++.+|+++|++++++ ++++|+
T Consensus 118 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~ 186 (404)
T 2o1b_A 118 TKNGLVAVPTCVINPGDYVLLPDPGYTDYLA--------GVLLADG--KPVPLNLEPPHYLPDWSKVDSQIID-KTKLIY 186 (404)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCSSHHH--------HHHHTTC--EEEEEECCTTTCCCCGGGSCHHHHH-HEEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHCCC--EEEEeccCcccCcCCHHHHHHhhcc-CceEEE
Confidence 589999999999999999999998876532 2234454 5555556544456899999998875 789999
Q ss_pred EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC---cccEEEeCCCccc--CCCCCceE
Q 013217 175 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK---YCDVVTTTTHKSL--RGPRGGMI 242 (447)
Q Consensus 175 ~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~---~~Di~~~s~~K~l--~Gp~gG~i 242 (447)
++.++||+ ..+ +++|.++|+++|+++|+|++|..+ ...+...+ .+. ..+++++|+||++ +|.|.|++
T Consensus 187 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 265 (404)
T 2o1b_A 187 LTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAF-GFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFA 265 (404)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTC-BSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEE
T ss_pred EcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeE
Confidence 98777765 444 688999999999999999998543 32221111 111 3568999999998 46677999
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN 322 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 322 (447)
++++ ++.+.+....... .++++....+++..+++.. ...+++..+++.++++.+.+.|++.|+++..+ ..+
T Consensus 266 ~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g 336 (404)
T 2o1b_A 266 VGNK------DMIQALKKYQTHT-NAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHA-KGG 336 (404)
T ss_dssp EECH------HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECC-CBS
T ss_pred ecCH------HHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCC-Ccc
Confidence 9877 6776665432211 1234555555555566653 23456777888899999999999888877643 335
Q ss_pred eeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 323 HLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 323 ~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
.++|+++. .+.+..++.+.|. ++||.+..+..++. ..++.+|++++. + +++++++++.|.++++
T Consensus 337 ~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~iRis~~~--~----~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 337 IYVWLETP-PGYDSEQFEQFLVQEKSILVAPGKPFGE---NGNRYVRISLAL--D----DQKLDEAAIRLTELAY 401 (404)
T ss_dssp SEEEEECC-TTCCHHHHHHHHHHHHCEECEESGGGCG---GGTTEEEEECCS--C----TTHHHHHHHHHHGGGG
T ss_pred eEEEEeCC-CCCCHHHHHHHHHHHCCEEEeCchhhCc---CCCCeEEEEEcC--C----HHHHHHHHHHHHHHHH
Confidence 55777775 3456677777664 68999975432211 124689999874 3 6789988888877654
No 97
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.94 E-value=2.4e-25 Score=221.02 Aligned_cols=342 Identities=14% Similarity=0.091 Sum_probs=225.8
Q ss_pred HhhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CC-ccceeeec
Q 013217 18 RQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--EN-KWGVNVQP 92 (447)
Q Consensus 18 ~~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~-~~~~~v~~ 92 (447)
+....|+|..+++. .++.+.+++.+.+.+. ..+|+.. ....++++...+++.+.+|.+ ++ .+ .+
T Consensus 23 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~~~~~g~~~~~~~~v----~~ 91 (411)
T 2o0r_A 23 TRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VNQYPPG------PGSAPLRRAIAAQRRRHFGVDYDPETEV----LV 91 (411)
T ss_dssp HTTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHHCCCCCTTTSE----EE
T ss_pred hcCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCCHHHHHHHHHHHHHHcCCCCCCCceE----EE
Confidence 34467888777664 5789999998887642 1233322 112456666667777777854 33 32 23
Q ss_pred CCc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhC
Q 013217 93 LSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFR 169 (447)
Q Consensus 93 ~sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~ 169 (447)
++| ++|+..++.++++|||+|++.++.|.++.. .+...|. +++.++++++ ++.+|+++|++++++ +
T Consensus 92 t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~l~~-~ 160 (411)
T 2o0r_A 92 TVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP--------VVAMAGA--HRVTVPLVPDGRGFALDADALRRAVTP-R 160 (411)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEEETTEEECCHHHHHHHCCT-T
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCC--EEEEeeccccccCCCCCHHHHHHhhcc-C
Confidence 555 589999999999999999999998877531 2334454 4445545432 456999999999976 8
Q ss_pred CcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC------CcccEEEeCCCcccC--C
Q 013217 170 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDVVTTTTHKSLR--G 236 (447)
Q Consensus 170 ~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~------~~~Di~~~s~~K~l~--G 236 (447)
|++|+++.++||+ ..+ +++|.++|+++|+++|+|++|+.+ ...+..+.++ ...|++++|+||+++ |
T Consensus 161 ~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 239 (411)
T 2o0r_A 161 TRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHL-VFDHARHLPLAGFDGMAERTITISSAAKMFNCTG 239 (411)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcChhhccCCCCCEEEEeechhhcCCcc
Confidence 9999988777765 444 589999999999999999998543 3222111111 246899999999874 5
Q ss_pred CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEee
Q 013217 237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV 316 (447)
Q Consensus 237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 316 (447)
.|.|++++++ ++.+.+.........+. +....+++..+++.. ...+++..+++.++++.+.+.|.+.|+++.
T Consensus 240 ~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 311 (411)
T 2o0r_A 240 WKIGWACGPA------ELIAGVRAAKQYLSYVG-GAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGFAVH 311 (411)
T ss_dssp TCEEEEECCH------HHHHHHHHHHHHHTSCC-CTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTCEEC
T ss_pred ceEEEEeeCH------HHHHHHHHHHhhccCCC-ChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCEec
Confidence 6679999976 67666654321111122 223344455566643 234577788888999999999988888876
Q ss_pred eCCCCCeeEEecCCCC-CCCHHHHHHHH-hhcCeEEccCCCCCCCC--------CCCCCeEEEecCccccCCCCHHHHHH
Q 013217 317 SGGSDNHLVLVDLRPM-GIDGARVEKIL-DMASITLNKNSVPGDKS--------ALVPGGIRIGSPAMTTRGFSEKEFVA 386 (447)
Q Consensus 317 ~~~~~~~~~~v~~~~~-~~~~~~~~~~L-~~~gI~v~~~~~p~~~~--------~~~~~~iRig~~~~~~~g~~~~di~~ 386 (447)
.+ ..++++|+++... +.+..++.+.| +++||.+..+....... +...+.+|+++. ++ ++|+++
T Consensus 312 ~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~----~e~i~~ 384 (411)
T 2o0r_A 312 DS-YGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KR----DDTLDE 384 (411)
T ss_dssp CC-CBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SC----HHHHHH
T ss_pred CC-CeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CC----HHHHHH
Confidence 53 3355677777532 14567777766 57899986542210100 002457999974 24 899999
Q ss_pred HHHHHHHHHHH
Q 013217 387 IADFIHEGVEI 397 (447)
Q Consensus 387 l~~~i~~~l~~ 397 (447)
+++.|+++++.
T Consensus 385 ~~~~l~~~~~~ 395 (411)
T 2o0r_A 385 AIRRLSVLAER 395 (411)
T ss_dssp HHHHHGGGGC-
T ss_pred HHHHHHHHHhc
Confidence 99999876654
No 98
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=1.6e-26 Score=226.36 Aligned_cols=328 Identities=12% Similarity=0.085 Sum_probs=217.1
Q ss_pred CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217 22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 101 (447)
Q Consensus 22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~ 101 (447)
.+++-.+.+..++ +++++...+.... |...+...+++ +.+++++|.+. .+.+++|++|+..
T Consensus 8 ~~~l~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~ 68 (374)
T 3uwc_A 8 YSYLERQFADIEP-YLNDLREFIKTAD---------FTLGAELEKFE----KRFAALHNAPH-----AIGVGTGTDALAM 68 (374)
T ss_dssp SCCHHHHTSSCHH-HHHHHHHHHHHTC---------CSSCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHH
T ss_pred eeccccCCCCchH-HHHHHHHHHHcCC---------cccChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHH
Confidence 4555566666777 8898887776521 12233344554 68889999873 3556889999999
Q ss_pred HHHHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCC
Q 013217 102 VYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180 (447)
Q Consensus 102 ~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~ 180 (447)
++.++ ++|||+|++..+.|.++.. .+...|. +++.++++ +++.+|++++++++++ ++++|+.++ .+
T Consensus 69 ~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~~~n-~~ 135 (374)
T 3uwc_A 69 SFKMLNIGAGDEVITCANTFIASVG--------AIVQAGA--TPVLVDSE-NGYVIDPEKIEAAITD-KTKAIMPVH-YT 135 (374)
T ss_dssp HHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBC-TTSSBCGGGTGGGCCT-TEEEECCBC-GG
T ss_pred HHHHcCCCCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEecC-CCCCcCHHHHHHhCCC-CceEEEEeC-Cc
Confidence 99999 9999999999998877532 2334454 55566666 5788999999999887 788887321 12
Q ss_pred CCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCC--cccCC-CCCceEEeecCCcchhhHHHH
Q 013217 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRG-PRGGMIFFKKDPVLGVELESA 257 (447)
Q Consensus 181 ~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~--K~l~G-p~gG~i~~~~~~~~~~~~~~~ 257 (447)
+...|+++|.++|+++|+++++|++|+.|....+.... ...|++++|+| |++++ +.||+++++++ ++.+.
T Consensus 136 G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~--~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~-----~~~~~ 208 (374)
T 3uwc_A 136 GNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVG--SWGQFACFSLHPLKNLNVWSDAGVIITHSD-----EYAEK 208 (374)
T ss_dssp GCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECSSSSSSCCSSCCEEEEESCH-----HHHHH
T ss_pred CCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeecc--ccccEEEEeCCCCCcCCccceeEEEEeCCH-----HHHHH
Confidence 23779999999999999999999999877553221111 13699999987 99977 46788888763 56555
Q ss_pred hhhccCCCC-------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cEeeeCCCCC----ee
Q 013217 258 INNAVFPGL-------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGSDN----HL 324 (447)
Q Consensus 258 i~~~~~~~~-------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~----~~ 324 (447)
+......+. ..+.+. .+.++.+++......+++++.++..++++.+.+.|.+.+ +++....... +.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (374)
T 3uwc_A 209 LRLYRNHGLINRDVCVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHI 287 (374)
T ss_dssp HHHHTBTTEEETTEESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSS
T ss_pred HHHHHhcCccccCccccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEE
Confidence 543221110 011111 111222233333334567788888899999999998854 6654321111 11
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCeEEccCC-CCCCCCC-C----------------CCCeEEEecCccccCCCCHHHHHH
Q 013217 325 VLVDLRPMGIDGARVEKILDMASITLNKNS-VPGDKSA-L----------------VPGGIRIGSPAMTTRGFSEKEFVA 386 (447)
Q Consensus 325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~-~p~~~~~-~----------------~~~~iRig~~~~~~~g~~~~di~~ 386 (447)
+.+.. .+..++.+.|.++||.++... .|....+ + ....+|++++..++ ++||++
T Consensus 288 ~~~~~----~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t----~edi~~ 359 (374)
T 3uwc_A 288 YVLRV----KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLT----EEEINY 359 (374)
T ss_dssp EEEEE----TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSC----HHHHHH
T ss_pred EEEEc----CCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCC----HHHHHH
Confidence 22221 256789999999999987653 1111100 0 01579999988887 999999
Q ss_pred HHHHHHHHHHH
Q 013217 387 IADFIHEGVEI 397 (447)
Q Consensus 387 l~~~i~~~l~~ 397 (447)
+++.|+++++.
T Consensus 360 ~~~~l~~~l~~ 370 (374)
T 3uwc_A 360 IIKKVREFYLE 370 (374)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998863
No 99
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.94 E-value=5.6e-26 Score=224.81 Aligned_cols=307 Identities=14% Similarity=0.088 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhc--cC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC
Q 013217 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTN--KY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN 80 (447)
Q Consensus 5 ~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~--~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g 80 (447)
..++++-+.+|.++|...++.++++|. +.|++++...... .+ ..||... ....+.+| +++++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~~~gy~y~-----~~~~~~Le----~~lA~l~g 87 (427)
T 3i16_A 19 VLKLYETAMNDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTNSSGYGYG-----DIGRDSLD----AVYARVFN 87 (427)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTT-----CHHHHHHH----HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCCCCCCCCC-----HHHHHHHH----HHHHHHhC
Confidence 456777778888999899999999996 7899998764321 11 1233222 22356666 57999999
Q ss_pred CCCCccceeee--cCCcHHHHHHHHHHhcCCCCEEEEec-CCCCcccCCC-cccc--ccccccccceeEEEecccCCCCC
Q 013217 81 LDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHG-FMTP--KRRVSGTSIYFESMPYRLDESTG 154 (447)
Q Consensus 81 ~~~~~~~~~v~--~~sGs~a~~~~~~al~~pgd~Vl~~~-~~~~~~~~~~-~~~~--~~~~~~~g~~~~~~~~~~~~~~~ 154 (447)
++. .+++ ++||++||..++.++++|||+|++.+ +.|+++.... .... ...+...| ++++.++++ +++
T Consensus 88 ~e~----alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G--~~~~~v~~~-~~g 160 (427)
T 3i16_A 88 TES----ALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFG--INYKQVDLK-EDG 160 (427)
T ss_dssp CSE----EEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGT--CEEEECCCC-TTS
T ss_pred Ccc----eEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcC--CEEEEecCc-cCC
Confidence 986 3343 68999999999999999999999998 7777653100 0000 00122334 355666665 457
Q ss_pred CCCHHHHHHHhhh-hCCcEEEEcC----CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC-ccc
Q 013217 155 LVDYDMLEKTAIL-FRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCD 224 (447)
Q Consensus 155 ~id~~~l~~~~~~-~~~klii~~~----~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~-~~D 224 (447)
.+|++++++++++ .+||+|+++. ++|++ ..|+++|+++|++ +|+++++|++|..+... ..|.. ++|
T Consensus 161 ~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~----~~p~~~gaD 236 (427)
T 3i16_A 161 KPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDT----KEPTDVGAD 236 (427)
T ss_dssp SCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSS----SCGGGGTCS
T ss_pred CcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccccc----CCccccCCe
Confidence 8999999999983 3899999986 66664 5689999999999 99999999998765421 22333 589
Q ss_pred EEEeCCCcccCC---CCCceEEeecCCcchhhHHHHhhhcc-CCCCC--CCCcHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 013217 225 VVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNAV-FPGLQ--GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV 298 (447)
Q Consensus 225 i~~~s~~K~l~G---p~gG~i~~~~~~~~~~~~~~~i~~~~-~~~~~--g~p~~~~~aal~~al~~~~~~~~~~~~~~~~ 298 (447)
++++|+||+++| ++||++++++ ++.+++.... .++.. .+|... +...+++.+. ....++++..
T Consensus 237 iv~~S~sK~lgg~g~~~gG~i~~~~------~li~~l~~~~~~~~~g~~~~~~~~---~a~~~l~gl~--~~~~r~~~~~ 305 (427)
T 3i16_A 237 LIAGSLIKNIGGGIAPTGGYLAGTK------DCIEKTSYRLTVPGIGGECGSTFG---VVRSMYQGLF--LAPHISMEAL 305 (427)
T ss_dssp EEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTT---CHHHHHHHHH--HHHHHHHHHH
T ss_pred EEEecCcccCCCCCCceEEEEEECH------HHHHHHHHhcccCccCccCCccHH---HHHHHHHHHH--HHHHHHHHHH
Confidence 999999999987 8899999987 7887776532 22221 122111 0112232221 2356789999
Q ss_pred HHHHHHHHHHHHCCcEeeeCCCCCe-----eEEecCCCCCCCHHHHHHHHhhcC
Q 013217 299 SNCRALASRLVELGYKLVSGGSDNH-----LVLVDLRPMGIDGARVEKILDMAS 347 (447)
Q Consensus 299 ~~~~~l~~~L~~~g~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~L~~~g 347 (447)
+++..+++.|++.|+++.++ .++ ++.+.+... .....+.+.|+...
T Consensus 306 ~~a~~la~~L~~~g~~V~p~--~~~~~~~~i~~i~l~~~-~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 306 KGAILCSRIMELAGFEVMPK--YDEKRSDIIQSIKFNDK-DKLIEFCKGIQTGS 356 (427)
T ss_dssp HHHHHHHHHHHHTTCEEESC--TTSCCSSSCEEEECSSH-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCeecCC--CCCCCccEEEEEEECCH-HHHHHHHHHHhhcC
Confidence 99999999999999988543 233 444555311 11234555666554
No 100
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.94 E-value=1.9e-25 Score=216.40 Aligned_cols=324 Identities=18% Similarity=0.176 Sum_probs=207.5
Q ss_pred CeeEecCCCC-CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 22 SLELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 22 ~i~l~~~~n~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
.|.|..+++. .++.+++++....... ..|+......+++ +++++++|.+. .+.+++|++|+.
T Consensus 5 ~i~~~~~~~~~p~~~~~~a~~~~~~~~--------~~y~~~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~ 67 (347)
T 1jg8_A 5 MIDLRSDTVTKPTEEMRKAMAQAEVGD--------DVYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQ 67 (347)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCCCC--------GGGTCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHH
T ss_pred EEEeccccCCCCCHHHHHHHhcCCCCC--------cccCCChHHHHHH----HHHHHHhCCce-----EEEecCcHHHHH
Confidence 4667677764 5688888886543211 1123333444555 67888999863 344688999999
Q ss_pred HHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEE
Q 013217 101 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIA 175 (447)
Q Consensus 101 ~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~ 175 (447)
.++.++++|||+|++.++.|.+.+... ..+...|. +++.+ .+ +++.+|++++++++++. +|++|++
T Consensus 68 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~ 138 (347)
T 1jg8_A 68 VSIMAHTQRGDEVILEADSHIFWYEVG-----AMAVLSGV--MPHPV-PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAI 138 (347)
T ss_dssp HHHHHHCCTTCEEEEETTCHHHHSSTT-----HHHHHTCC--EEEEE-CE-ETTEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCcchhhhcccc-----chhhccCe--EEEEe-cC-CCCccCHHHHHHHhccccccccCceEEEE
Confidence 999999999999999998876543211 01223444 44554 32 45678999999998752 6889988
Q ss_pred cCCCCC--C-CCC---hHHHHHHHHHhCCEEEEehhhhcccc-ccccCCCCC-CcccEEEeCCCcccCCCCCceEEeecC
Q 013217 176 GASAYP--R-DFD---YPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD 247 (447)
Q Consensus 176 ~~~~~~--~-~~~---~~~i~~ia~~~g~~livD~a~~~g~~-~~~~~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~ 247 (447)
++++|| + ..+ +++|.++|+++|+++++|++|..+.. ..+....++ .++|.+++|+||++++|.||+++.++
T Consensus 139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~- 217 (347)
T 1jg8_A 139 ENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR- 217 (347)
T ss_dssp ESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH-
T ss_pred eccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCH-
Confidence 877765 3 444 57889999999999999998754321 112111111 14788888999999887666666665
Q ss_pred CcchhhHHHHhhhccCCCCCCCC--cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeE
Q 013217 248 PVLGVELESAINNAVFPGLQGGP--HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV 325 (447)
Q Consensus 248 ~~~~~~~~~~i~~~~~~~~~g~p--~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 325 (447)
++.+++....... .++. .....++...+++.... . .++..++++.+.+.|++.|+++.......+++
T Consensus 218 -----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~----~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 286 (347)
T 1jg8_A 218 -----DFIERARKARKML-GGGMRQAGVLAAAGIIALTKMVD-R----LKEDHENARFLALKLKEIGYSVNPEDVKTNMV 286 (347)
T ss_dssp -----HHHHHHHHHHHHH-TCCCSSTHHHHHHHHHHHHHSST-T----HHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEE
T ss_pred -----HHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHhcCceeccCCCcceEE
Confidence 5655543211110 1111 11111122234544321 2 33445677888888887777653222334567
Q ss_pred EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
|+.+...+.+..++.+.|.++||.++.. ..+.+|++++..++ ++|++++++.|+++++
T Consensus 287 ~~~~~~~~~~~~~~~~~l~~~gi~v~~~---------~~~~iRl~~~~~~~----~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 287 ILRTDNLKVNAHGFIEALRNSGVLANAV---------SDTEIRLVTHKDVS----RNDIEEALNIFEKLFR 344 (347)
T ss_dssp EEECTTSSSCHHHHHHHHHHHTEECEEE---------ETTEEEEECCTTSC----HHHHHHHHHHHHHHHH
T ss_pred EEEcccccCCHHHHHHHHHHCCCEEecC---------CCCeEEEEeCCCCC----HHHHHHHHHHHHHHHH
Confidence 7777533456788988888899998632 13579999876666 9999999999998875
No 101
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.94 E-value=6.4e-27 Score=229.26 Aligned_cols=321 Identities=13% Similarity=0.066 Sum_probs=211.6
Q ss_pred CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-c
Q 013217 29 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L 107 (447)
Q Consensus 29 ~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~ 107 (447)
.+.+++.+++++.+.+...+ |...+...+++ +.+++++|.+. .+.++||++|+..++.++ +
T Consensus 12 ~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~i~~~sgt~al~~~l~~l~~ 73 (373)
T 3frk_A 12 HDEIEYEIKFKFEEIYKRNW---------FILGDEDKKFE----QEFADYCNVNY-----CIGCGNGLDALHLILKGYDI 73 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------CSSSHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHCCC---------ccCCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCC
Confidence 33457888888888776532 12223344554 67888999863 345688999999999999 9
Q ss_pred CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChH
Q 013217 108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYP 187 (447)
Q Consensus 108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~ 187 (447)
+|||+|+++.+.|.+... .+...|. +++.++++++++.+|++++++++++ ++++|+++. .++...|++
T Consensus 74 ~~gd~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n-~~G~~~~l~ 141 (373)
T 3frk_A 74 GFGDEVIVPSNTFIATAL--------AVSYTGA--KPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVH-LYGQPADMD 141 (373)
T ss_dssp CTTCEEEEETTSCTHHHH--------HHHHHSC--EEEEECEETTTTEECGGGTGGGCCT-TEEEEEEEC-CTTCCCCHH
T ss_pred CCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEeccccccCcCHHHHHHhcCC-CCeEEEEEC-CCcCcccHH
Confidence 999999999998877542 2334454 5666667766789999999999987 889888543 233378999
Q ss_pred HHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeC--CCcccCC-CCCceEEeecCCcchhhHHHHhhhccCC
Q 013217 188 RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT--THKSLRG-PRGGMIFFKKDPVLGVELESAINNAVFP 264 (447)
Q Consensus 188 ~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s--~~K~l~G-p~gG~i~~~~~~~~~~~~~~~i~~~~~~ 264 (447)
+|.++|+++|+++++|++|+.|....+.... ...|++++| .||++++ +.||+++++++ ++.+++......
T Consensus 142 ~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~-----~~~~~~~~~~~~ 214 (373)
T 3frk_A 142 EIKRIAKKYNLKLIEDAAQAHGSLYKGMKVG--SLGDAAGFSFYPAKNLGSLGDGGAVVTNDK-----DLAEKIKALSNY 214 (373)
T ss_dssp HHHHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSSCEEEEESCH-----HHHHHHHHHHBT
T ss_pred HHHHHHHHcCCEEEEECCcccCCEECCEecc--ccccEEEEeCcCCCccCccceeEEEEeCCH-----HHHHHHHHHHhc
Confidence 9999999999999999999887663321111 126888888 5599977 67899888763 565555432221
Q ss_pred CC--------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCC----eeEEecCCCC
Q 013217 265 GL--------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN----HLVLVDLRPM 332 (447)
Q Consensus 265 ~~--------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~----~~~~v~~~~~ 332 (447)
+. .|.+. .+.++.+++......++++..++..++++++.+.|.+.++.+....... +.+.+..
T Consensus 215 g~~~~~~~~~~g~~~--~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 289 (373)
T 3frk_A 215 GSEKKYHHIYKGFNS--RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRS--- 289 (373)
T ss_dssp TCSBTTBCCSCCCBC--CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEE---
T ss_pred CcccCCccccccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEe---
Confidence 11 11100 0111222222222234667778888888888888877665443211111 1122221
Q ss_pred CCCHHHHHHHHhhcCeEEccCC-CCCCCCC-----------C------CCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 333 GIDGARVEKILDMASITLNKNS-VPGDKSA-----------L------VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 333 ~~~~~~~~~~L~~~gI~v~~~~-~p~~~~~-----------~------~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
.+..++.+.|.++||.++..+ .|.+..+ . ..+.+|++++..+| ++|++++++.|++.
T Consensus 290 -~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t----~~di~~~~~~l~~~ 364 (373)
T 3frk_A 290 -EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMK----NEEIEYVIDKINAW 364 (373)
T ss_dssp -SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCC----HHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCC----HHHHHHHHHHHHHH
Confidence 257889999999999998653 2221100 0 01579999998887 99999999998765
Q ss_pred HH
Q 013217 395 VE 396 (447)
Q Consensus 395 l~ 396 (447)
..
T Consensus 365 ~~ 366 (373)
T 3frk_A 365 KL 366 (373)
T ss_dssp C-
T ss_pred hh
Confidence 43
No 102
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.94 E-value=5.4e-25 Score=217.61 Aligned_cols=322 Identities=18% Similarity=0.169 Sum_probs=218.4
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCc-ccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--C
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~ 108 (447)
.+|.+++++.+.+.+. ..+..+.+ .|+..+...+++ +.+++++|.+ + .|.+++|++++..++.++. .
T Consensus 61 ~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~----~~la~~~~~~-~----~i~~~sG~~a~~~~~~~l~~~~ 130 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAV-GAGSGGTRNISGTTAYHRRLE----AEIAGLHQKE-A----ALVFSSAYNANDATLSTLRVLF 130 (401)
T ss_dssp GCHHHHHHHHHHHHHH-CSCCCSBTTTBCCBHHHHHHH----HHHHHHTTCS-E----EEEESCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHc-CCCCCCcCcccCChHHHHHHH----HHHHHHhCCC-c----EEEECCcHHHHHHHHHHHhcCC
Confidence 3688999998887652 11111111 123333444444 6788899874 2 4555999988888877653 6
Q ss_pred CCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEcCCCCCC--C
Q 013217 109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASAYPR--D 183 (447)
Q Consensus 109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~---~~~klii~~~~~~~~--~ 183 (447)
|||+|++..+.|++... .+...|. +++.++.+ |+++++++++. .++++|++++++||+ .
T Consensus 131 ~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~ 194 (401)
T 2bwn_A 131 PGLIIYSDSLNHASMIE--------GIKRNAG--PKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDF 194 (401)
T ss_dssp TTCEEEEETTCCHHHHH--------HHHHSCC--CEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCB
T ss_pred CCCEEEECchhhHHHHH--------HHHHcCC--eEEEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCc
Confidence 99999999988876542 2233454 44444432 78999988873 378999998777764 7
Q ss_pred CChHHHHHHHHHhCCEEEEehhhhcccccc-c--cC-CCCC-CcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHh
Q 013217 184 FDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VV-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI 258 (447)
Q Consensus 184 ~~~~~i~~ia~~~g~~livD~a~~~g~~~~-~--~~-~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i 258 (447)
.|+++|.++|+++|+++++|++|+.|.... + .. ...+ +..|++++|++|++++ .||+++.++ ++.+.+
T Consensus 195 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~GG~~~~~~------~~~~~l 267 (401)
T 2bwn_A 195 GPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASA------RMVDAV 267 (401)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECH------HHHHHH
T ss_pred CCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-CCCEEecCH------HHHHHH
Confidence 899999999999999999999998665321 1 10 0011 1358999999999864 468988876 666655
Q ss_pred hhccC--CCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCH
Q 013217 259 NNAVF--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDG 336 (447)
Q Consensus 259 ~~~~~--~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~ 336 (447)
..... ....++++ ..++++..+++.+...++++..+++.++++++.+.|.+.|++++.+ ..+++++.+.. +.+.
T Consensus 268 ~~~~~~~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~~~~-~~~~ 343 (401)
T 2bwn_A 268 RSYAPGFIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--GSHIVPVVIGD-PVHT 343 (401)
T ss_dssp HHHCHHHHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--SSSCEEEECCC-HHHH
T ss_pred HHhCcCceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--CCCeEEEEeCC-hHHH
Confidence 43211 11223434 5566667788877665567888999999999999998888877643 23466777642 2345
Q ss_pred HHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 337 ARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 337 ~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
.++.+.| +++||.+.....|+. +...+.+|++++..++ ++|++++++.|+++++
T Consensus 344 ~~~~~~L~~~~gi~v~~~~~~~~--~~~~~~iRis~~~~~t----~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 344 KAVSDMLLSDYGVYVQPINFPTV--PRGTERLRFTPSPVHD----LKQIDGLVHAMDLLWA 398 (401)
T ss_dssp HHHHHHHHHHHCEECCEECTTTS--CTTCCEEEECCCTTSC----HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCEEEeecCCCCC--CCCCceEEEEeeCCCC----HHHHHHHHHHHHHHHH
Confidence 6788777 588999965432221 1123589999987777 9999999999988764
No 103
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.94 E-value=3.5e-25 Score=218.61 Aligned_cols=324 Identities=13% Similarity=0.091 Sum_probs=213.3
Q ss_pred CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-c
Q 013217 29 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L 107 (447)
Q Consensus 29 ~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al-~ 107 (447)
...+++++++++...+.+.|. +. .| +...+++ +.+++++|.+. .+.+++|++|+..++.++ +
T Consensus 7 ~p~~~~~v~~a~~~~~~~~~~---~~----~g-~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~~~~l~~ 69 (394)
T 1o69_A 7 PPHMGGNELKYIEEVFKSNYI---AP----LG-EFVNRFE----QSVKDYSKSEN-----ALALNSATAALHLALRVAGV 69 (394)
T ss_dssp -----CCHHHHHHHHHHHTTT---SC----TT-HHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHcCCc---cC----CC-hHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCC
Confidence 345678888998887765431 10 11 2234444 67888888742 244567779999999999 9
Q ss_pred CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCCCCCCCC
Q 013217 108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPRDFD 185 (447)
Q Consensus 108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~~~~~~~ 185 (447)
+|||+|+++++.|.++.. .+...|. +++.++++ +++.+|++++++++++. +|++|++++ .++...+
T Consensus 70 ~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~-~~G~~~~ 137 (394)
T 1o69_A 70 KQDDIVLASSFTFIASVA--------PICYLKA--KPVFIDCD-ETYNIDVDLLKLAIKECEKKPKALILTH-LYGNAAK 137 (394)
T ss_dssp CTTCEEEEESSSCGGGTH--------HHHHTTC--EEEEECBC-TTSSBCHHHHHHHHHHCSSCCCEEEEEC-GGGCCCC
T ss_pred CCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEEeC-CCCCcCHHHHHHHHhcccCCceEEEEEC-CCCChhh
Confidence 999999999998877642 2334454 55566666 56889999999998764 689988875 2334789
Q ss_pred hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccCCC
Q 013217 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG 265 (447)
Q Consensus 186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~ 265 (447)
+++|.++|+++|+++++|++|+.|..+.+.....+..+|+.++|.||.++|+++|+++++++ ++.+.+......+
T Consensus 138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~-----~l~~~l~~~~~~~ 212 (394)
T 1o69_A 138 MDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKARFYSTQA 212 (394)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHTBTC
T ss_pred HHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCH-----HHHHHHHHHHHhc
Confidence 99999999999999999999987876554322122357889999999998888899999642 6666655432211
Q ss_pred CC--------------CCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCC---CC-eeEEe
Q 013217 266 LQ--------------GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS---DN-HLVLV 327 (447)
Q Consensus 266 ~~--------------g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~-~~~~v 327 (447)
.. ++++.... + ++..+ ..+++..+++.++++++.+.|.+. +++..... .+ +++++
T Consensus 213 ~~~~~~~~~~~~g~~~~~~~~~aa--~--~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i 285 (394)
T 1o69_A 213 RENCLHYEHLDYGYNYRLSNVLGA--I--GVAQM--EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTA 285 (394)
T ss_dssp CCSSSSCCCSSCCCBCBCCHHHHH--H--HHHHH--TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEE
T ss_pred cccCccccccccCcccCcCHHHHH--H--HHHHH--HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEE
Confidence 10 02222221 1 22222 235667888999999999999887 66544311 12 23455
Q ss_pred cCCCC--------------------CCCHHHHHHHHhhcCeEEccCCCCCCC-CCCCC--------------CeEEEecC
Q 013217 328 DLRPM--------------------GIDGARVEKILDMASITLNKNSVPGDK-SALVP--------------GGIRIGSP 372 (447)
Q Consensus 328 ~~~~~--------------------~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~--------------~~iRig~~ 372 (447)
.+... +++..++.+.|.++||.++.+..|.+. +.+.. .++|+.++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (394)
T 1o69_A 286 LINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSG 365 (394)
T ss_dssp EESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCC
T ss_pred EecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCC
Confidence 55421 235678899999999999876433111 11111 34666656
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 373 AMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 373 ~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
..+| ++|+++++++|++++..
T Consensus 366 ~~~t----~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 366 TAMS----KDDVYEISKLILKSIKA 386 (394)
T ss_dssp TTCC----HHHHHHHHHHHHHHHC-
T ss_pred CCCC----HHHHHHHHHHHHHHHhc
Confidence 5565 99999999999887653
No 104
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.94 E-value=2.3e-24 Score=210.00 Aligned_cols=316 Identities=16% Similarity=0.135 Sum_probs=218.8
Q ss_pred cCeeEecCCCC--CCHHHHHHHhhhhhcc--CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217 21 KSLELIASENF--TSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 96 (447)
Q Consensus 21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~--~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs 96 (447)
..|+|..+++. .++.|++++...+.+. ...+|+... ..+++ +++++++|++++.+ +.+++|+
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~-------~~~lr----~~la~~~g~~~~~i---~~t~g~~ 92 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSAS-------SQKLR----EVAGELYGFDPSWI---IMANGSD 92 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSS-------CHHHH----HHHHHHHTCCGGGE---EEESSHH
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCc-------hHHHH----HHHHHHhCcCcceE---EEcCCHH
Confidence 46888888885 4799999998877652 012444321 13443 67888889876533 2234455
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217 97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 176 (447)
Q Consensus 97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~ 176 (447)
+|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++ ++.+ ++++ +..++++|+++
T Consensus 93 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~--~~l~---~~~~~~~v~i~ 156 (360)
T 3hdo_A 93 EVLNNLIRAFAAEGEEIGYVHPSYSYYGT--------LAEVQGA--RVRTFGLTG-DFRI--AGFP---ERYEGKVFFLT 156 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHHTC--EEEEECBCT-TSSB--TTCC---SSBCSSEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEcCCChHHHHH--------HHHHCCC--EEEEeeCCC-CCCH--HHHH---hhcCCCEEEEe
Confidence 99999999999999999999988876531 2334454 555655653 3444 4433 32367898888
Q ss_pred CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---CcccEEEeCCCccc--CCCCCceEEeecCCc
Q 013217 177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPRGGMIFFKKDPV 249 (447)
Q Consensus 177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~ 249 (447)
.++||+ ..|.+++.++|+++|+++++|++|+. +...+ ..++ ...+++++|+||++ +|.|.|++++++
T Consensus 157 ~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~-~~~~~--~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--- 230 (360)
T 3hdo_A 157 TPNAPLGPSFPLEYIDELARRCAGMLVLDETYAE-FAESN--ALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARP--- 230 (360)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGG-GSSCC--CTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCH---
T ss_pred CCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHh-hCCcc--hhHHhccCCCEEEEecchHhhcCCccceeeEeeCH---
Confidence 777775 88999999999999999999999853 22111 1111 12458889999996 467779999976
Q ss_pred chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecC
Q 013217 250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL 329 (447)
Q Consensus 250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~ 329 (447)
++.+.+.....+ .+++....+++..+++. ...+++..+++.++++.+.+.|++.|+.+..+ ...++++.+
T Consensus 231 ---~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~ 300 (360)
T 3hdo_A 231 ---EVIAALDKIRDH---YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIPS--QGNYLFATP 300 (360)
T ss_dssp ---HHHHHHHHHSCS---CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC--SSSEEEEEC
T ss_pred ---HHHHHHHHhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCC--CccEEEEEC
Confidence 787777665433 24566666666666664 23457788889999999999999888887543 344566665
Q ss_pred CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
. +.+..++.+.|.++||.++.+.. +..++.+|+++. + ++|++++.++|+++-+
T Consensus 301 ~--~~~~~~l~~~l~~~gi~v~~~~~-----~~~~~~iRis~~---~----~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 301 P--DRDGKRVYDGLYARKVLVRHFSD-----PLLAHGMRISIG---T----REEMEQTLAALKEIGE 353 (360)
T ss_dssp T--TCCHHHHHHHHHHTTEECBCCCS-----TTTTTSEEEECC---C----HHHHHHHHHHHHHHHC
T ss_pred C--CCCHHHHHHHHHHCCEEEEECCC-----CCCCCEEEEEcC---C----HHHHHHHHHHHHHHhc
Confidence 4 45788899999999999965321 122468999965 4 8999999999887654
No 105
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.94 E-value=4.2e-26 Score=223.01 Aligned_cols=320 Identities=18% Similarity=0.135 Sum_probs=213.9
Q ss_pred eEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217 24 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 103 (447)
Q Consensus 24 ~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~ 103 (447)
++..+.+.+++++++++.+.+.+.+ |...+...+++ +.+++++|.+. .+.++||++|+..++
T Consensus 6 ~~~~~~~~~~~~v~~a~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~~~~~sGt~al~~al 67 (367)
T 3nyt_A 6 DLKNQQARIKDKIDAGIQRVLRHGQ---------YILGPEVTELE----DRLADFVGAKY-----CISCANGTDALQIVQ 67 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCC---------CSSCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHhcCC---------ccCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHH
Confidence 3334444567889999888776531 11223344555 67888999873 355688999999999
Q ss_pred HHh-cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217 104 TAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 182 (447)
Q Consensus 104 ~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~ 182 (447)
.++ ++|||+|+++.+.|.+... .+...|. +++.++++++++.+|++++++++++ ++++|+.++ .++.
T Consensus 68 ~~~~~~~gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~ 135 (367)
T 3nyt_A 68 MALGVGPGDEVITPGFTYVATAE--------TVALLGA--KPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPVS-LYGQ 135 (367)
T ss_dssp HHTTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGTGGGCCT-TEEEECCBC-GGGC
T ss_pred HHhCCCCcCEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHhcCc-CCcEEEeeC-CccC
Confidence 999 8999999999998876532 2334454 6667777766789999999999976 888887442 2234
Q ss_pred CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCC--CcccCC-CCCceEEeecCCcchhhHHHHhh
Q 013217 183 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRG-PRGGMIFFKKDPVLGVELESAIN 259 (447)
Q Consensus 183 ~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~--~K~l~G-p~gG~i~~~~~~~~~~~~~~~i~ 259 (447)
..|+++|.++|+++|+++|+|++|+.|....+..... ..|++++|+ ||++++ +.||+++++++ ++.+++.
T Consensus 136 ~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~Sf~~~K~l~~~g~gg~~~~~~~-----~l~~~~~ 208 (367)
T 3nyt_A 136 CADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCN--LSTVACTSFFPSAPLGCYGDGGAIFTNDD-----ELATAIR 208 (367)
T ss_dssp CCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCCEEEEESCH-----HHHHHHH
T ss_pred hhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccC--CCCEEEEECCCCCcCCCcCceeEEEeCCH-----HHHHHHH
Confidence 7899999999999999999999998876644322111 138999885 899976 45788888763 6666655
Q ss_pred hccCC-----------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC----Cee
Q 013217 260 NAVFP-----------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD----NHL 324 (447)
Q Consensus 260 ~~~~~-----------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~ 324 (447)
..... +.....+....++ ++..+ ..+++..++..++++++.+.|.+.|+.+...... .+.
T Consensus 209 ~~~~~g~~~~~~~~~~g~~~~~~~~~aa~---~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 283 (367)
T 3nyt_A 209 QIARHGQDRRYHHIRVGVNSRLDTLQAAI---LLPKL--EIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQ 283 (367)
T ss_dssp HHTBTTEEETTEECSCCCBCCCCHHHHHH---HHHHH--HTHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSS
T ss_pred HHHhcCCCcCceeeccCcCCCccHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEE
Confidence 43222 1111222222222 22222 2356667888889999999999877655432111 122
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCeEEccCCC-CCCC-CCC-------------CCCeEEEecCccccCCCCHHHHHHHHH
Q 013217 325 VLVDLRPMGIDGARVEKILDMASITLNKNSV-PGDK-SAL-------------VPGGIRIGSPAMTTRGFSEKEFVAIAD 389 (447)
Q Consensus 325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~-p~~~-~~~-------------~~~~iRig~~~~~~~g~~~~di~~l~~ 389 (447)
+.+.+. +.+++.+.|.++||.++..+. |.+. +++ ....||++++..+| ++|++++++
T Consensus 284 ~~~~~~----~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t----~~~i~~v~~ 355 (367)
T 3nyt_A 284 YTVRMD----NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLD----TASIKIICA 355 (367)
T ss_dssp EEEECS----SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCC----HHHHHHHHH
T ss_pred EEEEeC----CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCC----HHHHHHHHH
Confidence 333332 578899999999999876532 3221 111 12358998876666 999999999
Q ss_pred HHHH
Q 013217 390 FIHE 393 (447)
Q Consensus 390 ~i~~ 393 (447)
.|++
T Consensus 356 ~~~~ 359 (367)
T 3nyt_A 356 ALTN 359 (367)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8864
No 106
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.8e-25 Score=221.99 Aligned_cols=339 Identities=13% Similarity=0.092 Sum_probs=222.9
Q ss_pred hhcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCC
Q 013217 19 QFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLS 94 (447)
Q Consensus 19 ~~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~s 94 (447)
.+..|+|..+.+. .|+.+.+++...+......+|+.. ....++++.+.+++.+.+|.+ ++ +|.+++
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~------~g~~~lr~~ia~~l~~~~g~~~~~~----~v~~t~ 125 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPT------RGRPSLINSLIKLYSPIYNTELKAE----NVTVTT 125 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCT------TCCHHHHHHHHHHHTTTTTSCCCGG----GEEEES
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC------CCCHHHHHHHHHHHHHhcCCCCChh----hEEEeC
Confidence 3467888776653 478999998877653111233221 112355555556777777754 33 233466
Q ss_pred c-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-----------CCCCCHHHHH
Q 013217 95 G-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-----------TGLVDYDMLE 162 (447)
Q Consensus 95 G-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~id~~~l~ 162 (447)
| ++|+..++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|+++|+
T Consensus 126 G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~ 195 (447)
T 3b46_A 126 GANEGILSCLMGLLNAGDEVIVFEPFFDQYIP--------NIELCGG--KVVYVPINPPKELDQRNTRGEEWTIDFEQFE 195 (447)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEEEECCGGGGTSCBCSTTSEECHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEeCCCccccccccccccCcccCHHHHH
Confidence 6 599999999999999999999998876532 2334554 4444445433 4679999999
Q ss_pred HHhhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCC--CC----CcccEEEeCCC
Q 013217 163 KTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF----KYCDVVTTTTH 231 (447)
Q Consensus 163 ~~~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~----~~~Di~~~s~~ 231 (447)
+++++ ++++|++++++||+ .. ++++|.++|++||+++|+|++|. ++...+.... .+ .+.++++.|+|
T Consensus 196 ~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~i~i~S~s 273 (447)
T 3b46_A 196 KAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYE-HLYFTDSFTRIATLSPEIGQLTLTVGSAG 273 (447)
T ss_dssp TTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCCCCGGGSCHHHHTTEEEEEEHH
T ss_pred Hhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccch-hcccCCCCcCHHHcCCCCCCcEEEEecCc
Confidence 99875 89999988778775 33 58999999999999999999974 3333321111 11 13689999999
Q ss_pred ccc--CCCCCceEEe-ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHH
Q 013217 232 KSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASR 307 (447)
Q Consensus 232 K~l--~Gp~gG~i~~-~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~ 307 (447)
|++ +|+|.|++++ ++ ++.+.+......... +++....+++..+++... ...+++..+++.++++.+.+.
T Consensus 274 K~~~~~G~riG~~~~~~~------~l~~~l~~~~~~~~~-~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (447)
T 3b46_A 274 KSFAATGWRIGWVLSLNA------ELLSYAAKAHTRICF-ASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSI 346 (447)
T ss_dssp HHTTCTTSCCEEEECSCH------HHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCcchhhEEEEeCCH------HHHHHHHHHHhhccC-CCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 997 4777899999 66 676666542111112 234444555556776542 123567788889999999999
Q ss_pred HHHCCcEeeeCCCCCeeEEecCCCC--------------CCCHHHHHHHH-hhcCeEEccCCCCCCCC--CCCCCeEEEe
Q 013217 308 LVELGYKLVSGGSDNHLVLVDLRPM--------------GIDGARVEKIL-DMASITLNKNSVPGDKS--ALVPGGIRIG 370 (447)
Q Consensus 308 L~~~g~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~L-~~~gI~v~~~~~p~~~~--~~~~~~iRig 370 (447)
|.+.|+++..+ ...+++|+++... +.+..++.+.| +++||.+..+...+... +...+.+|++
T Consensus 347 L~~~g~~~~~~-~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls 425 (447)
T 3b46_A 347 FDELGLPYTAP-EGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFA 425 (447)
T ss_dssp HHHHTCCEECC-SBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEE
T ss_pred HHHCCCeecCC-CeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEE
Confidence 98888887643 3456678887532 13455677666 46899986532111100 1124689999
Q ss_pred cCccccCCCCHHHHHHHHHHHHH
Q 013217 371 SPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 371 ~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
+.. + ++++++.++.|.+
T Consensus 426 ~~~--~----~e~l~~~~~~l~~ 442 (447)
T 3b46_A 426 VCK--D----DAYLENAVERLKL 442 (447)
T ss_dssp CCS--C----HHHHHHHHHHGGG
T ss_pred EeC--C----HHHHHHHHHHHHH
Confidence 752 3 8888888887754
No 107
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.93 E-value=1.1e-24 Score=215.98 Aligned_cols=339 Identities=12% Similarity=0.019 Sum_probs=222.5
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG 95 (447)
.+.|+|..+++. .++.|++++...+.+....+|+.. ....++++...+++.+.+|.+ +++ +|.+++|
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~l~~~la~~~~~~~~~~~~~~~---~i~~~~g 93 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRG------FGHPALVKALSCLYGKIYQRQIDPNE---EILVAVG 93 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCT------TCCHHHHHHHHHHHHHHHTSCCCTTT---SEEEESH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCC------CChHHHHHHHHHHHHHHhCCCCCCCC---CEEEeCC
Confidence 466888777664 589999999887764322244432 112355555556777777754 311 2333565
Q ss_pred H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC----------CCCCCCHHHHHHH
Q 013217 96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----------STGLVDYDMLEKT 164 (447)
Q Consensus 96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~id~~~l~~~ 164 (447)
+ +++..++.++++|||+|++..|.|.++.. .+...|. +++.+++++ .++.+|+++++++
T Consensus 94 ~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~ 163 (410)
T 3e2y_A 94 AYGSLFNSIQGLVDPGDEVIIMVPFYDCYEP--------MVRMAGA--VPVFIPLRSKPTDGMKWTSSDWTFDPRELESK 163 (410)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEECCCCSSCCBGGGEECCHHHHHTT
T ss_pred cHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEeccccccccccccccCCcCCHHHHHhh
Confidence 5 99999999999999999999988876531 2334454 333433431 2456899999999
Q ss_pred hhhhCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC------cccEEEeCCCcc
Q 013217 165 AILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKS 233 (447)
Q Consensus 165 ~~~~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~------~~Di~~~s~~K~ 233 (447)
+++ ++++|+++.++||+ .. ++++|.++|+++|+++|+|++|. ++...+....++. ..++++.|+||+
T Consensus 164 ~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~ 241 (410)
T 3e2y_A 164 FSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE-WLVYTGHTHVKIATLPGMWERTITIGSAGKT 241 (410)
T ss_dssp CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSTTCGGGEEEEEEHHHH
T ss_pred cCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh-hcccCCCCCCCHHHcCCccCeEEEEecchhh
Confidence 876 89999998788775 32 68999999999999999999974 4333332111111 234888999998
Q ss_pred c--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH------hcChhHHHHHHHHHHHHHHHH
Q 013217 234 L--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH------AQSPEFKVYQNKVVSNCRALA 305 (447)
Q Consensus 234 l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~------~~~~~~~~~~~~~~~~~~~l~ 305 (447)
+ +|.|.|++++++ ++.+.+........ .+++....+++..+++. .....+++..+++.++++.+.
T Consensus 242 ~g~~G~r~G~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 314 (410)
T 3e2y_A 242 FSVTGWKLGWSIGPA------HLIKHLQTVQQNSF-YTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMV 314 (410)
T ss_dssp SSCGGGCCEEEECCH------HHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEECH------HHHHHHHHHHHhhc-cCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 7 467779999987 67666654332222 23355555555556653 123345778888899999999
Q ss_pred HHHHHCCcEeeeCCCCCeeEEecCCCC--CCC--------HHHHH-HHHhhcCeEEccCCCCCCCC--CCCCCeEEEecC
Q 013217 306 SRLVELGYKLVSGGSDNHLVLVDLRPM--GID--------GARVE-KILDMASITLNKNSVPGDKS--ALVPGGIRIGSP 372 (447)
Q Consensus 306 ~~L~~~g~~~~~~~~~~~~~~v~~~~~--~~~--------~~~~~-~~L~~~gI~v~~~~~p~~~~--~~~~~~iRig~~ 372 (447)
+.|.+.|+.+..+ ..++++|+++... +++ ..++. ..|+++||.+..+...+... +...+.+|+++.
T Consensus 315 ~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~ 393 (410)
T 3e2y_A 315 RLLNSVGLKPIVP-DGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFI 393 (410)
T ss_dssp HHHHTTTCEEEBC-SBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECC
T ss_pred HHHHHCCCeecCC-CccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEc
Confidence 9999889887654 3456677776431 222 12444 46678999996543221110 112468999964
Q ss_pred ccccCCCCHHHHHHHHHHHHH
Q 013217 373 AMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 373 ~~~~~g~~~~di~~l~~~i~~ 393 (447)
. + ++++++.++.|++
T Consensus 394 ~--~----~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 394 K--K----DSTLDAAEEIFRA 408 (410)
T ss_dssp C--C----HHHHHHHHHHHHT
T ss_pred C--C----HHHHHHHHHHHHh
Confidence 3 4 8999999988764
No 108
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.93 E-value=2.3e-24 Score=212.60 Aligned_cols=333 Identities=14% Similarity=0.072 Sum_probs=223.5
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC---CC-ccceeeecC
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD---EN-KWGVNVQPL 93 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~---~~-~~~~~v~~~ 93 (447)
+..|+|..+++. .++.+++++...+.. ..+|+.. ....++++...+++.+.+|.+ ++ .+ .++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~~~i----~~t 97 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTASLHE--LEKYPLT------AGLPELRQACANWLKRRYDGLTVDADNEI----LPV 97 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHHTGGG--GGSCCCT------TCCHHHHHHHHHHHHHHTTTCCCCTTTSE----EEE
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHHHhhh--ccCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCCCCeE----EEc
Confidence 356888777774 479999999887753 2244432 112345555667888888854 54 32 235
Q ss_pred CcH-HHHHHHHHHhcCCC-----CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh
Q 013217 94 SGS-PANFEVYTAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 167 (447)
Q Consensus 94 sGs-~a~~~~~~al~~pg-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~ 167 (447)
+|+ +++..++.++++|| |+|++..|.|.++.. .+...|. +++.++++.+++.+|++++++++++
T Consensus 98 ~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~g~~~d~~~l~~~~~~ 167 (396)
T 3jtx_A 98 LGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG--------ATLLGGG--EIHFANCPAPSFNPDWRSISEEVWK 167 (396)
T ss_dssp SSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECCTTTCCCCGGGSCHHHHH
T ss_pred CCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEEeecCCCCCccCHHHHHHhhcc
Confidence 555 89999999999997 799999988766531 2334454 4555556545667899999999987
Q ss_pred hCCcEEEEcCCCCCC--CCCh---HHHHHHHHHhCCEEEEehhhhccccccccCCCCC----------CcccEEEeCCCc
Q 013217 168 FRPKLIIAGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVADPF----------KYCDVVTTTTHK 232 (447)
Q Consensus 168 ~~~klii~~~~~~~~--~~~~---~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----------~~~Di~~~s~~K 232 (447)
++++|+++.++||+ ..+. ++|.++|+++|+++|+|++|. ++...+..+.+. ...++++.|+||
T Consensus 168 -~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 245 (396)
T 3jtx_A 168 -RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYS-EIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSK 245 (396)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTT-TCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTT
T ss_pred -CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCchHHhhhhhcccccCcEEEEecccc
Confidence 89999988778875 5554 559999999999999999975 333332111110 235689999999
Q ss_pred cc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217 233 SL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE 310 (447)
Q Consensus 233 ~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 310 (447)
++ +|.|.|+++.++ ++.+.+....... .++++....+++..+++. ....++..+++.++++.+.+.|.+
T Consensus 246 ~~~~~G~r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~ 316 (396)
T 3jtx_A 246 RSNVPGLRSGFVAGDA------ELLKNFLLYRTYH-GSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQ 316 (396)
T ss_dssp TSSCGGGCCEEEEECH------HHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcccceEEEEeCH------HHHHHHHHHHhhc-ccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 64 577789998877 6776665432211 234455555555556653 344577788888889999999876
Q ss_pred CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCC---CCCCCCeEEEecCccccCCCCHHHHHH
Q 013217 311 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVA 386 (447)
Q Consensus 311 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~---~~~~~~~iRig~~~~~~~g~~~~di~~ 386 (447)
. +.+..+ ..++++|+++.. .+..++.+.| +++||.+..+..++.. .+...+.+|+++.. + ++++++
T Consensus 317 ~-~~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~----~~~i~~ 386 (396)
T 3jtx_A 317 V-FDVKLP-DASFYIWLKVPD--GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--D----VATCVK 386 (396)
T ss_dssp T-SCCCCC-SSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--C----HHHHHH
T ss_pred c-CCccCC-CeeEEEEEECCC--CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--C----HHHHHH
Confidence 4 333332 345677888754 3566777766 6789999765332211 12235789999754 4 899999
Q ss_pred HHHHHHHHH
Q 013217 387 IADFIHEGV 395 (447)
Q Consensus 387 l~~~i~~~l 395 (447)
.++.|.+++
T Consensus 387 ~l~~l~~~l 395 (396)
T 3jtx_A 387 AAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999887754
No 109
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.93 E-value=1.1e-24 Score=217.18 Aligned_cols=333 Identities=17% Similarity=0.216 Sum_probs=218.9
Q ss_pred eEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217 24 ELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 101 (447)
Q Consensus 24 ~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~ 101 (447)
+|..+++.. |+.+++++...+... .|+. ..+...+++ +.+++++|.+. .+.+++|++|+..
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~---~y~~-----~~~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~ 82 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQ---WLSN-----GGPLVREFE----ERVAGLAGVRH-----AVATCNATAGLQL 82 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHT---CCSS-----SCHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhcC---Cccc-----CCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHH
Confidence 466677754 458999988877542 1221 023344554 67888888752 2444666799999
Q ss_pred HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217 102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 181 (447)
Q Consensus 102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~ 181 (447)
++.++. +||+|++.++.|.++.. .+...|. +++.++++++++.+|+++|++++++ ++++|+++. .++
T Consensus 83 ~l~~l~-~gd~Vlv~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~tG 149 (424)
T 2po3_A 83 LAHAAG-LTGEVIMPSMTFAATPH--------ALRWIGL--TPVFADIDPDTGNLDPDQVAAAVTP-RTSAVVGVH-LWG 149 (424)
T ss_dssp HHHHHT-CCSEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTSSBCHHHHGGGCCT-TEEEEEEEC-GGG
T ss_pred HHHHcC-CCCEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHhhCc-CCcEEEEEC-CCC
Confidence 998885 79999999998877632 2334454 5666667655778999999998876 889988864 233
Q ss_pred CCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCC--cccCCCCCceEEeecCCcchhhHHHHh
Q 013217 182 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAI 258 (447)
Q Consensus 182 ~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~--K~l~Gp~gG~i~~~~~~~~~~~~~~~i 258 (447)
...++++|.++|+++|+++|+|++|+.|+...+. ++. ..|++++|+| |+++|+++|+++++++ ++.+++
T Consensus 150 ~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~-----~l~~~l 221 (424)
T 2po3_A 150 RPCAADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLGDAEVFSFHATKAVNAFEGGAVVTDDA-----DLAARI 221 (424)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHH
T ss_pred CcCCHHHHHHHHHHcCCEEEEECccccCCeECCe---ecccccCEEEEeCCCCCCccCCCCeEEEeCCH-----HHHHHH
Confidence 3779999999999999999999999777664332 121 3588888887 8898888999999842 666665
Q ss_pred hhccCCCC--------CCCC-cHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC--CC-CC-ee
Q 013217 259 NNAVFPGL--------QGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--GS-DN-HL 324 (447)
Q Consensus 259 ~~~~~~~~--------~g~p-~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~-~~-~~ 324 (447)
......+. .|.+ ....+++ +.++... .+++++.++..++++++.+.|.+. |+++... +. .+ ++
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~a-a~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~ 298 (424)
T 2po3_A 222 RALHNFGFDLPGGSPAGGTNAKMSEAAA-AMGLTSL--DAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQY 298 (424)
T ss_dssp HHHHBTTTTCTTCCTTCCCBCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCC
T ss_pred HHHHhcCccccccccccCcCCCcCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEE
Confidence 54322211 1111 1111211 1223222 345667788888888899988874 7877652 11 11 33
Q ss_pred EEecCCC--CCCCHHHHHHHHhhcCeEEccCCCCC-CC-CCCC--------------CCeEEEecCccccCCCCHHHHHH
Q 013217 325 VLVDLRP--MGIDGARVEKILDMASITLNKNSVPG-DK-SALV--------------PGGIRIGSPAMTTRGFSEKEFVA 386 (447)
Q Consensus 325 ~~v~~~~--~~~~~~~~~~~L~~~gI~v~~~~~p~-~~-~~~~--------------~~~iRig~~~~~~~g~~~~di~~ 386 (447)
+.+.+.. .+.+..++.+.|.++||.++..+.|. +. ..+. ...||++++..++ ++|+++
T Consensus 299 ~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t----~e~i~~ 374 (424)
T 2po3_A 299 VIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIG----DDDIRR 374 (424)
T ss_dssp EEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCC----HHHHHH
T ss_pred EEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCC----HHHHHH
Confidence 3355432 14567889999999999997632211 10 0010 1128888777666 999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013217 387 IADFIHEGVEITLEA 401 (447)
Q Consensus 387 l~~~i~~~l~~~~~~ 401 (447)
+++.|+++++.....
T Consensus 375 ~~~~L~~~~~~~~~~ 389 (424)
T 2po3_A 375 VADLLRLCATRGREL 389 (424)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHH
Confidence 999999998766544
No 110
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.93 E-value=3.7e-24 Score=211.96 Aligned_cols=340 Identities=16% Similarity=0.045 Sum_probs=219.5
Q ss_pred cCeeEecCCC----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCC
Q 013217 21 KSLELIASEN----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLS 94 (447)
Q Consensus 21 ~~i~l~~~~n----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~s 94 (447)
..|+|..+.. +.++.+.+++...+.+... ... |+......++++...+++.+.+|. +++ .|.+++
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~----~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~----~v~~t~ 105 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPK----SVM-YTPANGIPELREELAAFLKKYDHLEVSPE----NIVITI 105 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGG----GGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGG----GEEEES
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhhccc----ccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcc----eEEEec
Confidence 5678754432 2457888888877754210 000 121122346665555666666684 343 233466
Q ss_pred c-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhh----h-h
Q 013217 95 G-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI----L-F 168 (447)
Q Consensus 95 G-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~----~-~ 168 (447)
| ++|+..++.++++|||+|++..|.|.++.. .+...|. +++.+++++ ++ +|+++|+++++ + .
T Consensus 106 g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~-~~-~d~~~l~~~l~~~~~~~~ 173 (407)
T 2zc0_A 106 GGTGALDLLGRVLIDPGDVVITENPSYINTLL--------AFEQLGA--KIEGVPVDN-DG-MRVDLLEEKIKELKAKGQ 173 (407)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTTC--EEEEEEEET-TE-ECHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEcccCC-CC-CCHHHHHHHHHhhhcccC
Confidence 6 599999999999999999999988766431 2334454 455555653 33 99999999987 4 2
Q ss_pred CCcEEE-EcCCCCCC--CCChH---HHHHHHHHhCCEEEEehhhhccccccccCCCCC---C--cccEEEeCCCcccC-C
Q 013217 169 RPKLII-AGASAYPR--DFDYP---RMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSLR-G 236 (447)
Q Consensus 169 ~~klii-~~~~~~~~--~~~~~---~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K~l~-G 236 (447)
++++|+ +..++||+ ..+.+ +|.++|+++|+++++|++|..+ ...+....++ + ..++++.|+||+++ |
T Consensus 174 ~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G 252 (407)
T 2zc0_A 174 KVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFM-RYEGGDIVPLKALDNEGRVIVAGTLSKVLGTG 252 (407)
T ss_dssp CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BSSCSSCCCGGGGCSSCCEEEEEESTTTTCTT
T ss_pred CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCccc-ccCCCCCCChhhcCCCCCEEEEcccccccCCC
Confidence 678875 45666664 66765 9999999999999999998544 3222111111 1 24578899999986 4
Q ss_pred CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-C-hhHHHHHHHHHHHHHHHHHHHHHC--C
Q 013217 237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-S-PEFKVYQNKVVSNCRALASRLVEL--G 312 (447)
Q Consensus 237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~-~~~~~~~~~~~~~~~~l~~~L~~~--g 312 (447)
.|+|++++++ ++.+.+.....+...++ +....+++..+++... . ..+++..+++.++++.+.+.|.+. |
T Consensus 253 ~r~G~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 325 (407)
T 2zc0_A 253 FRIGWIIAEG------EILKKVLMQKQPIDFCA-PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPN 325 (407)
T ss_dssp SCCEEEECCH------HHHHHHHHHHTTTTSSS-CHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cceEEEecCH------HHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4789999986 77777765443333333 3333444444554321 1 223456677788888999999873 6
Q ss_pred cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217 313 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391 (447)
Q Consensus 313 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i 391 (447)
+++..+ ....++|+++.. +.+..++.+.|.++ ||.+..+..++.. ....+.+|++++.. + ++|++++++.|
T Consensus 326 ~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~~~~~-~~~~~~iRis~~~~-~----~~~i~~~~~~l 397 (407)
T 2zc0_A 326 AEFTKP-IAGMFVMFFLPE-GADGISFANELMEREGVVVVPGKPFYTD-ESGKNAIRLNFSRP-S----KEEIPIGIKKL 397 (407)
T ss_dssp SCBCCC-SBSSEEEEECST-TCCHHHHHHHHHHHTCEECBCSGGGCSS-SCCTTEEEEECSSS-C----TTHHHHHHHHH
T ss_pred CEEecC-CCcEEEEEEcCC-CCCHHHHHHHHHHhCCeEEECchhccCC-CCCCCeEEEEeCCC-C----HHHHHHHHHHH
Confidence 766543 234567787753 55778888888776 9999754322111 11246899998755 4 79999999999
Q ss_pred HHHHHH
Q 013217 392 HEGVEI 397 (447)
Q Consensus 392 ~~~l~~ 397 (447)
.++++.
T Consensus 398 ~~~l~~ 403 (407)
T 2zc0_A 398 AKLYKE 403 (407)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 111
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.93 E-value=1.9e-24 Score=213.49 Aligned_cols=338 Identities=13% Similarity=0.022 Sum_probs=218.9
Q ss_pred hhcCeeEecCCC----CCCHHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeec
Q 013217 19 QFKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP 92 (447)
Q Consensus 19 ~~~~i~l~~~~n----~~~~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~ 92 (447)
.+..|+|..+.. +.++.+.+++.+.+.... ..+|+.. ....+++ +.+++++|++++. |.+
T Consensus 31 ~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~~~~~l~----~~la~~~g~~~~~----v~~ 96 (397)
T 2zyj_A 31 RPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPT------EGYAPLR----AFVAEWIGVRPEE----VLI 96 (397)
T ss_dssp STTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCT------TCCHHHH----HHHHHHHTSCGGG----EEE
T ss_pred CCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCC------CCCHHHH----HHHHHHhCCChhh----EEE
Confidence 345678754432 146788888877765310 1133221 1123444 5677777876653 334
Q ss_pred CCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 013217 93 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 171 (447)
Q Consensus 93 ~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k 171 (447)
++|+ +++..++.++++|||+|++..|.|.++.. .+...|. +++.++.++ ++ +|+++|++++++.+++
T Consensus 97 ~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~-~~-~d~~~l~~~l~~~~~~ 164 (397)
T 2zyj_A 97 TTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQ--------AFRLQGP--RFLTVPAGE-EG-PDLDALEEVLKRERPR 164 (397)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEET-TE-ECHHHHHHHHHHCCCS
T ss_pred eccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--EEEecCcCC-CC-CCHHHHHHHHhhcCCe
Confidence 6665 89999999999999999999988876531 2233454 455555553 33 9999999999765789
Q ss_pred EEE-EcCCCCCC--CCCh---HHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--cc------cEEEeCCCcccC-C
Q 013217 172 LII-AGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YC------DVVTTTTHKSLR-G 236 (447)
Q Consensus 172 lii-~~~~~~~~--~~~~---~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--~~------Di~~~s~~K~l~-G 236 (447)
+|+ ++.++||+ ..+. ++|.++|+++|+++|+|++|+.+ ...+..+.++. .. .++++|+||+++ |
T Consensus 165 ~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G 243 (397)
T 2zyj_A 165 FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYREL-YFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG 243 (397)
T ss_dssp CEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTC-BCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred EEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccc-cCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence 875 55666664 5554 58999999999999999998543 32221111111 12 288999999986 4
Q ss_pred CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC---Cc
Q 013217 237 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL---GY 313 (447)
Q Consensus 237 p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~ 313 (447)
.|.|++++++ ++.+.+.........++ +....+++..+++.......++..+++.++++.+.+.|++. |+
T Consensus 244 ~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~ 316 (397)
T 2zyj_A 244 LRVAFAVAHP------EALQKLVQAKQGADLHT-PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEV 316 (397)
T ss_dssp GCCEEEECCH------HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred ceeEEEecCH------HHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 5669999987 67776654322222233 33334444444543110234666777888889999999874 78
Q ss_pred EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
++..+ ...+++|+++.. +.+..++.+.|.++||.+..+...+.. +..++.+|++++.. + ++|++++++.|.+
T Consensus 317 ~~~~~-~~g~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~f~~~-~~~~~~iRis~~~~-~----~~~i~~~~~~l~~ 388 (397)
T 2zyj_A 317 RYTRP-KGGMFVWMELPK-GLSAEGLFRRALEENVAFVPGGPFFAN-GGGENTLRLSYATL-D----REGIAEGVRRLGR 388 (397)
T ss_dssp EECCC-SBSSEEEEECST-TCCHHHHHHHHHHTTEEEEESGGGCTT-SCCTTEEEEECSSS-C----HHHHHHHHHHHHH
T ss_pred EEccC-CccEEEEEEcCC-CCCHHHHHHHHHHCCCEEechHHhcCC-CCCCCeEEEEcCCC-C----HHHHHHHHHHHHH
Confidence 87543 235567788753 456788888888889999754322111 11346899998764 4 8999999999998
Q ss_pred HHHHH
Q 013217 394 GVEIT 398 (447)
Q Consensus 394 ~l~~~ 398 (447)
+++..
T Consensus 389 ~l~~~ 393 (397)
T 2zyj_A 389 ALKGL 393 (397)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88643
No 112
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.93 E-value=4.5e-25 Score=233.24 Aligned_cols=299 Identities=14% Similarity=0.066 Sum_probs=209.7
Q ss_pred HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217 70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 148 (447)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 148 (447)
.+++.+++++|.+.. +.+++|+ ++|.+++.++++|||+|++..+.|.+.+. .+...|. +++.++
T Consensus 209 ~~ee~la~l~G~d~~-----i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~--------~~~~~G~--~~v~v~ 273 (755)
T 2vyc_A 209 ESEKYAARVFGADRS-----WSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--------GLMLTGA--KPVYMV 273 (755)
T ss_dssp HHHHHHHHHHTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHHCC--EEEEEC
T ss_pred HHHHHHHHHhCCCce-----EEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH--------HHHHcCC--EEEEEe
Confidence 345788999998742 3347886 89999999999999999999998876542 2334555 444443
Q ss_pred cCCCC----CCC-----CHHHHHHHhhhh-CC--------cEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217 149 LDEST----GLV-----DYDMLEKTAILF-RP--------KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISG 209 (447)
Q Consensus 149 ~~~~~----~~i-----d~~~l~~~~~~~-~~--------klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g 209 (447)
.+.++ +.+ |+++|++++++. ++ ++++++++++.+ ..|+++|+++|+++|+++++|+||+.+
T Consensus 274 ~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 274 PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp CCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred CCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence 43222 235 999999999752 33 388887776655 789999999999999999999999765
Q ss_pred ccccccC--CCCCCc--ccE------EEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHH
Q 013217 210 LVAASVV--ADPFKY--CDV------VTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 278 (447)
Q Consensus 210 ~~~~~~~--~~~~~~--~Di------~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal 278 (447)
+...+.. ..++.+ +|+ +++|+||+|+||++ |+++++++.... + ..++.........++|+...++++
T Consensus 354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i-~-~~~~~~~~~~~~s~sp~~~~iaal 431 (755)
T 2vyc_A 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAI-N-FSRFNQAYMMHATTSPLYAICASN 431 (755)
T ss_dssp GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCC-C-HHHHHHHHHHTSCSSCCHHHHHHH
T ss_pred cccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCccccc-C-HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4332211 122223 565 99999999999985 888887631000 0 122222212223578999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CC---------cEeeeCC-----------------------------
Q 013217 279 AVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LG---------YKLVSGG----------------------------- 319 (447)
Q Consensus 279 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g---------~~~~~~~----------------------------- 319 (447)
.+|++.+...+.+++.++..++++++++.|++ .| ++++.+.
T Consensus 432 ~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (755)
T 2vyc_A 432 DVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWV 511 (755)
T ss_dssp HHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTB
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhc
Confidence 99999887765678899999999999999987 35 5554321
Q ss_pred --------------C-----CCeeEEecCCCC---------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec
Q 013217 320 --------------S-----DNHLVLVDLRPM---------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 371 (447)
Q Consensus 320 --------------~-----~~~~~~v~~~~~---------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~ 371 (447)
. |...+.++++.. |+++.++.+.|+++||.+... ....+|+.+
T Consensus 512 ~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~---------~~~~v~~~~ 582 (755)
T 2vyc_A 512 MHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT---------TDFQIMFLF 582 (755)
T ss_dssp CCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE---------CSSEEEEEC
T ss_pred cCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec---------CCCeEEEEE
Confidence 0 122334455432 355589999999999988642 235799988
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 372 PAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 372 ~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+..+| ++++++++++|.+..+..
T Consensus 583 ~~g~t----~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 583 SMGVT----RGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp CTTCC----TTTTHHHHHHHHHHHHHH
T ss_pred CCCCC----HHHHHHHHHHHHHHHHhh
Confidence 87666 999999999998886654
No 113
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.93 E-value=1.3e-24 Score=210.93 Aligned_cols=324 Identities=13% Similarity=0.117 Sum_probs=210.2
Q ss_pred cCeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217 21 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 99 (447)
Q Consensus 21 ~~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~ 99 (447)
..|.+..+.+ ..+|.+++++.+.+.. |..+ |+..+... ..++++++++| ...+ .+.+++|++|+
T Consensus 8 ~~id~~~~~~~~~~~~v~~a~~~~~~~-~~~~------~~~~~~~~----~l~~~la~~~g-~~~~---v~~~~~gt~a~ 72 (356)
T 1v72_A 8 PALGFSSDNIAGASPEVAQALVKHSSG-QAGP------YGTDELTA----QVKRKFCEIFE-RDVE---VFLVPTGTAAN 72 (356)
T ss_dssp CCCBCSCGGGCCCCHHHHHHHHHTTSS-CCCS------TTCSHHHH----HHHHHHHHHHT-SCCE---EEEESCHHHHH
T ss_pred ceEeeccCCccCCCHHHHHHHHhhccC-cccc------cccchHHH----HHHHHHHHHhC-CCCc---EEEeCCccHHH
Confidence 3455544322 3579999999876522 2112 22223233 34578899999 3321 24457778999
Q ss_pred HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccc--cceeEEEecccCCCCCCCCHHHHHH-Hhhhh------CC
Q 013217 100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEK-TAILF------RP 170 (447)
Q Consensus 100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~id~~~l~~-~~~~~------~~ 170 (447)
..++.++++|||+|++.++.|++.+..+ .+... |. +++.++.+ ++.+|+++|++ ++++. +|
T Consensus 73 ~~al~~~~~~gd~vi~~~~~~~~~~~~~------~~~~~~~g~--~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 73 ALCLSAMTPPWGNIYCHPASHINNDECG------APEFFSNGA--KLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp HHHHHTSCCTTEEEEECTTSHHHHSSTT------HHHHHTTSC--EEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred HHHHHHhcCCCCEEEEcCccchhhhhch------HHHHHhCCc--EEEEecCC--CCeEcHHHHHHHhhhcchhhccCCc
Confidence 9999999999999999988776543210 02233 54 55555554 46899999999 88652 57
Q ss_pred cEEEEcCCCCCC-CC---ChHHHHHHHHHhCCEEEEehhhhcccc-ccccCCCCC---CcccEEEeCCCcccCCCCC-ce
Q 013217 171 KLIIAGASAYPR-DF---DYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF---KYCDVVTTTTHKSLRGPRG-GM 241 (447)
Q Consensus 171 klii~~~~~~~~-~~---~~~~i~~ia~~~g~~livD~a~~~g~~-~~~~~~~~~---~~~Di~~~s~~K~l~Gp~g-G~ 241 (447)
++|+++++++++ .. ++++|.++|++||+++++|++|..+.. ..+..+..+ .++|++++|+||+ .+|.| |+
T Consensus 143 ~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~ 221 (356)
T 1v72_A 143 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAI 221 (356)
T ss_dssp EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEE
T ss_pred eEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEE
Confidence 899888665554 33 478999999999999999999864321 122222222 1578999999999 56767 68
Q ss_pred EEeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCC
Q 013217 242 IFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGG 319 (447)
Q Consensus 242 i~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~ 319 (447)
+++++ ++.+++.... ..+....+. .. +...+++.+....+.+..+++.++++++.+.|.+ .|+++..+
T Consensus 222 ~~~~~------~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~- 291 (356)
T 1v72_A 222 VLFNT------SLATEMSYRRKRAGHLSSKM--RF-LSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG- 291 (356)
T ss_dssp EESSG------GGHHHHHHHHHHTTCCCSST--HH-HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESC-
T ss_pred EEECH------HHHhhHHHHhhccCchhhhH--HH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccC-
Confidence 88876 5655544321 111111111 12 2222344444444566778888999999999988 58887654
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 320 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 320 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
...+++|+++. .++.+.|.++||.+..+. +..+.+|++++..++ ++|++++++.|+++++.
T Consensus 292 ~~~~~~~~~~~------~~~~~~l~~~gi~v~~g~-------~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 292 TEANILFCRLD------SAMIDALLKAGFGFYHDR-------WGPNVVRFVTSFATT----AEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CCSSEEEEEEC------HHHHHHHHHTTCBCBCSS-------SSTTEEEEECCTTCC----HHHHHHHHHHHHHTC--
T ss_pred CCccEEEEEcC------HHHHHHHHhcCeEEeccc-------cCCCeEEEEecCCCC----HHHHHHHHHHHHHHHHh
Confidence 34556677653 367788888999986432 114689999876666 99999999999887653
No 114
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.93 E-value=1.7e-25 Score=217.83 Aligned_cols=328 Identities=12% Similarity=0.079 Sum_probs=215.7
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccC----chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG----GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG- 95 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~----g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG- 95 (447)
+.+.+.+++..+|+.|++++.+.+.+ + ..++...|+ ... ...+.+.+++++++++|++..+ .|.+++|
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~~~~-~--~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~~---~v~~~~g~ 75 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKELLN-F--NDTQMSVMELSHRSQS-YEEVHEQAQNLLRELLQIPNDY---QILFLQGG 75 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSS-S--TTSSSCGGGSCTTSHH-HHHHHHHHHHHHHHHHTCCTTE---EEEEESSH
T ss_pred ceEeecCCCcCCCHHHHHHHHHHhhh-h--ccccccccccCCCCHH-HHHHHHHHHHHHHHHhCCCCCc---eEEEECCc
Confidence 45788889889999999999887754 2 122211111 112 2223335668999999997321 2223433
Q ss_pred -HHHHHHHHHHhcCC---CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHH-HhhhhCC
Q 013217 96 -SPANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRP 170 (447)
Q Consensus 96 -s~a~~~~~~al~~p---gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~-~~~~~~~ 170 (447)
++|+.+++.+++.+ ||.|++..+.|.+. ..+...| +++.++++++++.+|++++++ ++++ +|
T Consensus 76 gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~---------~~~~~~g---~~~~v~~~~~~~~~d~~~l~~~~i~~-~~ 142 (360)
T 1w23_A 76 ASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL---------KEAKLLG---ETHIAASTKANSYQSIPDFSEFQLNE-ND 142 (360)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH---------HHHHTTS---EEEEEEECGGGTSCSCCCGGGCCCCT-TE
T ss_pred chHHHHHHHHHhcCCCCcccEEEecchhHHHH---------HHHHHhC---CeEEeecccccCcCCccchHhhccCC-CC
Confidence 68999999999866 55566554433211 0122344 344445554345689999988 7765 89
Q ss_pred cEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecC
Q 013217 171 KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 247 (447)
Q Consensus 171 klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~ 247 (447)
|+|++++++||+ ..+ +|++++|+++++|++|+.|.... ++...|++++|+||+++ |.| |++++++
T Consensus 143 k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~~-----~~~~~di~~~s~sK~~~-~~G~G~~~~~~- 210 (360)
T 1w23_A 143 AYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRPL-----KVNQFGMIYAGAQKNLG-PSGVTVVIVKK- 210 (360)
T ss_dssp EEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSCC-----CGGGCSEEEEETTTTTS-CTTCEEEEEEH-
T ss_pred CEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCCc-----CcccCCEEEEEcccccC-CCCcEEEEEcH-
Confidence 999998766665 445 33347999999999997764322 22224899999999885 667 9999987
Q ss_pred CcchhhHHHHhhhcc-----------CCCCCCCCcHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHCC-c-
Q 013217 248 PVLGVELESAINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y- 313 (447)
Q Consensus 248 ~~~~~~~~~~i~~~~-----------~~~~~g~p~~~~~aal~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~- 313 (447)
++.+++.... .....++++...++++..+++.+... ++++..+++.++++++.+.|++.+ +
T Consensus 211 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 285 (360)
T 1w23_A 211 -----DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFY 285 (360)
T ss_dssp -----HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSS
T ss_pred -----HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 5555444321 11224677777777777788776544 567888999999999999998865 5
Q ss_pred Eeee-CC-CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217 314 KLVS-GG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391 (447)
Q Consensus 314 ~~~~-~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i 391 (447)
.... +. ..++++++.+.. ..+..++.+.|.++||.+.. +.. .++.+|++++..++ ++|+++++++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~----~~~---~~~~iRis~~~~~~----~~~i~~~~~~l 353 (360)
T 1w23_A 286 VGHAEKGSRSLMNVTFNLRN-EELNQQFLAKAKEQGFVGLN----GHR---SVGGCRASIYNAVP----IDACIALRELM 353 (360)
T ss_dssp EESSCGGGBCSSEEEEECSS-HHHHHHHHHHHHHTTEESCB----CCT---TTCSEEEECCTTSC----HHHHHHHHHHH
T ss_pred cccCCchhccCcEEEEEcCC-CccHHHHHHHHHHCCeeeec----CCC---CCCeEEEEecCCCC----HHHHHHHHHHH
Confidence 5431 21 123466777642 12345677778889999843 321 14579999987777 99999999999
Q ss_pred HHHHHH
Q 013217 392 HEGVEI 397 (447)
Q Consensus 392 ~~~l~~ 397 (447)
+++++.
T Consensus 354 ~~~~~~ 359 (360)
T 1w23_A 354 IQFKEN 359 (360)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887653
No 115
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.93 E-value=1.2e-23 Score=209.72 Aligned_cols=305 Identities=12% Similarity=0.075 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcc-----ceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217 66 ELETLCQKRALAAFNLDENKW-----GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 139 (447)
Q Consensus 66 ~le~~~~~~~~~~~g~~~~~~-----~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 139 (447)
.+.+...+++++.+|.+.... .-+|.+++|+ +|+..++.++++|||+|++.+|.|.++.. .+...|
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g 153 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ--------SLHPLG 153 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHGGGT
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcC
Confidence 344455567888888764100 0134457775 89999999999999999999998876532 233455
Q ss_pred ceeEEEecccCCCCCCCCHHHHHHHhhh-----------hCCcEEEEc-CCCCCC--CCCh---HHHHHHHHHhCCEEEE
Q 013217 140 IYFESMPYRLDESTGLVDYDMLEKTAIL-----------FRPKLIIAG-ASAYPR--DFDY---PRMRQIADAVGALLMM 202 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~-----------~~~klii~~-~~~~~~--~~~~---~~i~~ia~~~g~~liv 202 (447)
. +++.+++++ + .+|+++|+++++. .++++|++. .++||+ ..+. ++|.++|+++|+++|+
T Consensus 154 ~--~~~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~ 229 (425)
T 2r2n_A 154 C--NIINVASDE-S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIE 229 (425)
T ss_dssp C--EEEEECEET-T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred C--EEEEeCcCC-C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4 555555653 2 4999999999872 268988774 667775 5665 4999999999999999
Q ss_pred ehhhhccccccccCCCCC---C--cccEEEeCCCcccC-CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHH
Q 013217 203 DMAHISGLVAASVVADPF---K--YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG 276 (447)
Q Consensus 203 D~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~a 276 (447)
|++|+ ++.+.+....++ + ..+++++|+||+++ |.|.|++++++ ++.+.+........ .+++....+
T Consensus 230 De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~------~l~~~l~~~~~~~~-~~~~~~~q~ 301 (425)
T 2r2n_A 230 DDPYY-FLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK------PLIERVILHIQVST-LHPSTFNQL 301 (425)
T ss_dssp ECTTG-GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH------HHHHHHHHHHHTTT-CSSCHHHHH
T ss_pred ECCcc-cccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCH------HHHHHHHHHHHHhc-CCCCHHHHH
Confidence 99974 333332211111 1 24588999999984 56679999988 67776655332222 234555555
Q ss_pred HHHHHHHHhcC----hhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeCCCCCeeEEecCCCCCCCHHH-HHHHHhhcCeE
Q 013217 277 GLAVCLKHAQS----PEFKVYQNKVVSNCRALASRLVEL--GYKLVSGGSDNHLVLVDLRPMGIDGAR-VEKILDMASIT 349 (447)
Q Consensus 277 al~~al~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~L~~~gI~ 349 (447)
++..+++.+.. ...++..+++.++++.+.+.|.+. |+..+..+...+++|+++... .+..+ +.+.|.++||.
T Consensus 302 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~~~l~~~gv~ 380 (425)
T 2r2n_A 302 MISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGI-NDVKELIEEKAVKMGVL 380 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTC-SCCHHHHHTHHHHTTEE
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCC-CCHHHHHHHHHHHCCcE
Confidence 55556664321 223555677778888888999873 763222223456778887542 34444 67888899999
Q ss_pred EccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 350 LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 350 v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+..+...+.......+.+|+++.. .+ +++++++++.|.++++
T Consensus 381 v~pg~~f~~~~~~~~~~iRis~~~-~~----~~~i~~~~~~l~~~l~ 422 (425)
T 2r2n_A 381 MLPGNAFYVDSSAPSPYLRASFSS-AS----PEQMDVAFQVLAQLIK 422 (425)
T ss_dssp CEEGGGGSSSTTSCCCEEEEECSS-CC----HHHHHHHHHHHHHHHH
T ss_pred EechhhhcCCCCCCCCEEEEEeCC-CC----HHHHHHHHHHHHHHHH
Confidence 976432221111124689999763 34 8999999999988875
No 116
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.93 E-value=8.3e-24 Score=212.18 Aligned_cols=341 Identities=12% Similarity=0.036 Sum_probs=220.1
Q ss_pred hhcCeeEecCCC----CCCHHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC-CCCccceeee
Q 013217 19 QFKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQ 91 (447)
Q Consensus 19 ~~~~i~l~~~~n----~~~~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~-~~~~~~~~v~ 91 (447)
.+..|+|..+.. +.++.+.+++...+.+.. ..+|+.. ....++++...+++.+.+|. +++ +|.
T Consensus 75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~------~g~~~lr~~ia~~~~~~~g~~~~~----~v~ 144 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTT------KGFTPLRETLMKWLGKRYGISQDN----DIM 144 (448)
T ss_dssp TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCTTS----EEE
T ss_pred CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCC------CCcHHHHHHHHHHHHHhcCcCChh----hEE
Confidence 345678754433 245778888877665410 1123221 11245555555566566698 443 344
Q ss_pred cCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhh----
Q 013217 92 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI---- 166 (447)
Q Consensus 92 ~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~---- 166 (447)
+++|+ +|+..++.++++|||+|++..|.|.++.. .+...|. +++.++.++ + .+|+++|+++++
T Consensus 145 ~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~-g~d~~~L~~~l~~~~~ 212 (448)
T 3aow_A 145 ITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ--------AFNFYEP--QYIQIPLDD-E-GMKVEILEEKLKELKS 212 (448)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEET-T-EECHHHHHHHHHHHHH
T ss_pred EeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEeccCC-C-CCCHHHHHHHHhhhhc
Confidence 46665 89999999999999999999998876532 2334454 555555653 3 399999999987
Q ss_pred h-hCCcEEE-EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C--cccEEEeCCCccc
Q 013217 167 L-FRPKLII-AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL 234 (447)
Q Consensus 167 ~-~~~klii-~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~--~~Di~~~s~~K~l 234 (447)
+ .+|++|+ +..++||+ ..+ +++|.++|+++|+++|+|++|+.+ ...+....++ + +.++++.|++|++
T Consensus 213 ~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~-~~~g~~~~~~~~~~~~~~vi~~~S~SK~~ 291 (448)
T 3aow_A 213 QGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGEL-RYSGNPEKKIKALDNEGRVIYLGTFSKIL 291 (448)
T ss_dssp TTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTC-BCSSCCCCCTGGGCTTSCEEEEEESTTTT
T ss_pred cCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccc-cCCCCCCcCHHhcCCCCCEEEEccchhhc
Confidence 3 2788875 45667765 454 568999999999999999997543 3322211111 1 2468899999998
Q ss_pred C-CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHC-
Q 013217 235 R-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVEL- 311 (447)
Q Consensus 235 ~-Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~- 311 (447)
+ |.|.|++++++ ++.+.+.........+ ++....+++..+++... ....++..+++.++++.+.+.|++.
T Consensus 292 ~~GlriG~v~~~~------~l~~~l~~~~~~~~~~-~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 364 (448)
T 3aow_A 292 APGFRIGWMVGDP------GIIRKMEIAKQSTDLC-TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFM 364 (448)
T ss_dssp CGGGCCEEEEECH------HHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccEEEEEeCH------HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5 55679999987 6777665432221122 24444444444554320 1223555667778889999999874
Q ss_pred --CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217 312 --GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD 389 (447)
Q Consensus 312 --g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~ 389 (447)
|+++..+ ....++|+++.. +.+..++.+.|.+.||.+..+...+. .+..++.+|+++... + ++++++.++
T Consensus 365 ~~g~~~~~p-~~g~~~~v~~~~-~~~~~~l~~~l~~~gV~v~pg~~f~~-~~~~~~~iRls~~~~-~----~e~i~~~~~ 436 (448)
T 3aow_A 365 PEGVKWTKP-EGGMFIWVTLPD-GIDSKKMLERAIKKGVAYVPGEAFYA-HRDVKNTMRLNFTYV-D----EDKIMEGIK 436 (448)
T ss_dssp CTTCEECCC-SBSSEEEEECST-TCCHHHHHHHHHHTTEECEEGGGGST-TCCCCSEEEEECSSS-C----THHHHHHHH
T ss_pred CCCeEEeCC-CccEEEEEEcCC-CCCHHHHHHHHHHCCcEEEcchhhcC-CCCCCCEEEEEeCCC-C----HHHHHHHHH
Confidence 7876543 335667888753 45777888888788999865422211 111346899997653 4 899999999
Q ss_pred HHHHHHHH
Q 013217 390 FIHEGVEI 397 (447)
Q Consensus 390 ~i~~~l~~ 397 (447)
.|.++++.
T Consensus 437 ~L~~~l~~ 444 (448)
T 3aow_A 437 RLAETIKE 444 (448)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988864
No 117
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.93 E-value=8.3e-25 Score=221.32 Aligned_cols=311 Identities=13% Similarity=0.020 Sum_probs=208.6
Q ss_pred CchhHHHHHHHHHHHHHHHHcCCCCCcc-------ceeeecCCcHHHHHHHHHHhcC-------------------CCCE
Q 013217 59 GGNEYIDELETLCQKRALAAFNLDENKW-------GVNVQPLSGSPANFEVYTAILK-------------------PHDR 112 (447)
Q Consensus 59 ~g~~~~~~le~~~~~~~~~~~g~~~~~~-------~~~v~~~sGs~a~~~~~~al~~-------------------pgd~ 112 (447)
...+...++|+.+.+++++++|.+.+.+ ...+.+++||+||+.++.+... |+++
T Consensus 111 ~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~ 190 (481)
T 4e1o_A 111 ASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLV 190 (481)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEE
T ss_pred CCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeE
Confidence 3345678899999999999999985421 0124457788999888776532 6789
Q ss_pred EEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEcCCCC-CC-CCC
Q 013217 113 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASAY-PR-DFD 185 (447)
Q Consensus 113 Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~-----~klii~~~~~~-~~-~~~ 185 (447)
|++....|.+.. +.+.+.|. +++.++++ +++.+|+++|++++++.+ |.+|+++.+++ .+ ..|
T Consensus 191 v~~s~~~H~s~~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~ 259 (481)
T 4e1o_A 191 AYASDQAHSSVE--------KAGLISLV--KMKFLPVD-DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC 259 (481)
T ss_dssp EEEETTSCHHHH--------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred EEEcCcchHHHH--------HHHHhCCC--ceEEEEcC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence 999988776642 12334454 55555565 578999999999997632 66677664333 33 779
Q ss_pred hHHHHHHHHHhCCEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHH-hhh
Q 013217 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA-INN 260 (447)
Q Consensus 186 ~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~-i~~ 260 (447)
+++|+++|++||+++++|+||..+....+... ..+..+|++++++||||.+|.| |+++++++ ..... +..
T Consensus 260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~-----~~l~~~~~~ 334 (481)
T 4e1o_A 260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDK-----YKLQQTFSV 334 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBH-----HHHHTTTCC
T ss_pred HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCH-----HHHHHHhcC
Confidence 99999999999999999999877654332211 1223479999999999999988 88888874 33221 110
Q ss_pred ---ccCC------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCee
Q 013217 261 ---AVFP------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHL 324 (447)
Q Consensus 261 ---~~~~------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~ 324 (447)
.... ...++.. ....+++.+++.+...+++++.++..++++++++.|++ .|++++.+ ....+
T Consensus 335 ~~~yl~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~-~~~~~ 412 (481)
T 4e1o_A 335 NPIYLRHANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAK-RHLGL 412 (481)
T ss_dssp CCGGGCCTTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSC-CCSSE
T ss_pred CchhccCcccCCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CceeE
Confidence 0000 0111211 12345666676666677889999999999999999998 48988754 23455
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCeE-EccCCCCCCCCCCCCCeEEEecCcc-ccCCCCHHHHHHHHHHHHHHHHH
Q 013217 325 VLVDLRPMGIDGARVEKILDMASIT-LNKNSVPGDKSALVPGGIRIGSPAM-TTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 325 ~~v~~~~~~~~~~~~~~~L~~~gI~-v~~~~~p~~~~~~~~~~iRig~~~~-~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+++.+...+....++.+.|.+.|+. +.. .. ......+|+++... ++ ++|++++.+.|+++.+.
T Consensus 413 v~f~~~~~~~~~~~l~~~L~~~g~~~~~~----~~--~~g~~~lR~~~~~~~tt----~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 413 VVFRLKGPNSLTENVLKEIAKAGRLFLIP----AT--IQDKLIIRFTVTSQFTT----RDDILRDWNLIRDAATL 477 (481)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHCSSBCEE----EE--ETTEEEEEEECCCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHHhCCeEEEEe----eE--ECCEEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH
Confidence 6666543222345677778777743 321 11 01234799996544 35 99999999999887764
No 118
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.93 E-value=6.2e-24 Score=208.06 Aligned_cols=326 Identities=13% Similarity=0.048 Sum_probs=218.1
Q ss_pred cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceeeecCCcH
Q 013217 21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS 96 (447)
Q Consensus 21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v~~~sGs 96 (447)
..|+|..+++. .|+.+.+++...+.. ..+|+.. ....++++...+++.+.+|. +++.+ +.+++|+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~i---~~t~g~~ 92 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHS--LNIYPKS------AFEESLRAAQRGFFKRRFKIELKENEL---ISTLGSR 92 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGG--GGSCCCT------TCCHHHHHHHHHHHHHHHSCCCCGGGE---EEESSSH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhh--cCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCHHHE---EECcCcH
Confidence 45788777774 478999999887632 2234332 11234555556778788887 44432 2234556
Q ss_pred HHHHHHHHHhcCC--CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217 97 PANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 97 ~a~~~~~~al~~p--gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii 174 (447)
+++..++.++++| ||+|++..|.|.++.. .+...|. +++.++++++ +.+++ ++++.+.+ ++++|+
T Consensus 93 ~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~-~~~~~-~l~~~~~~-~~~~v~ 159 (376)
T 3ezs_A 93 EVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG--------AAKFIKA--KSLLMPLTKE-NDFTP-SLNEKELQ-EVDLVI 159 (376)
T ss_dssp HHHHHHHHHHTTTCSSCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGG-GTSCC-CCCHHHHH-HCSEEE
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCCcHhHHH--------HHHHcCC--EEEEcccCCC-CCcch-hHHhhhcc-CCCEEE
Confidence 9999999999999 9999999998876532 2334454 4555556533 23444 67777766 899999
Q ss_pred EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC----------CCcccEEEeCCCccc--CCC
Q 013217 175 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP----------FKYCDVVTTTTHKSL--RGP 237 (447)
Q Consensus 175 ~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~----------~~~~Di~~~s~~K~l--~Gp 237 (447)
++.++||+ ..+ +++|.++|+++|+++|+|++|.. +...+..... ....++++.|+||++ +|.
T Consensus 160 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 238 (376)
T 3ezs_A 160 LNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGL 238 (376)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGG
T ss_pred EcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchh-hccCCCCCCHHHccccccccccCcEEEEecchhccCCccc
Confidence 98778875 555 66778889999999999999754 3332211110 113568999999997 466
Q ss_pred CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee
Q 013217 238 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS 317 (447)
Q Consensus 238 ~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 317 (447)
|.|+++.++ ++.+.+....... ..+++....+++..+++. ...+++..+++.++++.+.+.|+ ++. .
T Consensus 239 r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--~ 305 (376)
T 3ezs_A 239 RSGFIAGDS------RLLEKYKAFRAYL-GYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--I 305 (376)
T ss_dssp CCEEEEECH------HHHHHHHHHHTTT-CCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--C
T ss_pred eeEEEeeCH------HHHHHHHHHHhhh-cCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--C
Confidence 779999877 7777776543322 234455555555556654 33457777888888888888886 664 2
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 318 GGSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 318 ~~~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+ ...+++|+++. +..++.+.|.+ +||.+..+..++.. +...+.+|++++. + ++|++++++.|.++++
T Consensus 306 ~-~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~~-~~~~~~iRis~~~--~----~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 306 Y-PYSFYVYLPVQ----NGENFAKTLYQNEGIITLPALYLGRN-RIGADYVRLALVY--D----TPLLEKPLEIIETYRE 373 (376)
T ss_dssp C-SBSSEEEEECS----CHHHHHHHHHHHHCCBCEEGGGGCST-TTTTTEEEEECCS--C----HHHHHHHHHHHHHHHC
T ss_pred C-CcceEEEEECC----CHHHHHHHHHHhCCEEEeCcHHhCCC-CCCCCeEEEEEcC--C----HHHHHHHHHHHHHHHH
Confidence 2 34566777775 56778777766 89999764333211 2235689999763 4 8999999999988775
No 119
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=1.1e-24 Score=217.08 Aligned_cols=341 Identities=17% Similarity=0.070 Sum_probs=221.6
Q ss_pred hcCeeEecCCC----CCCHHHHHHHhhhhhccC--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC---CCCCccceee
Q 013217 20 FKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNV 90 (447)
Q Consensus 20 ~~~i~l~~~~n----~~~~~v~~a~~~~~~~~~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g---~~~~~~~~~v 90 (447)
+..|+|..+.. +.++.+.+++.+.+.... ..+|+.. ....++++...+++.+.+| ++++ +|
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~----~v 112 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTT------EGDPVLKQQILKLLERMYGITGLDED----NL 112 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCT------TCCHHHHHHHHHHHHHHHCCCSCCGG----GE
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCC------CCCHHHHHHHHHHHHhccCCCCCCcc----cE
Confidence 45677755442 246789999887775410 1233221 1124565555566666668 4444 23
Q ss_pred ecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh--
Q 013217 91 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-- 167 (447)
Q Consensus 91 ~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~-- 167 (447)
.+++|+ +++..++.++++|||+|++.+|.|.++.. .+...|. +++.+++++ + .+|+++|++++++
T Consensus 113 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~-~~d~~~l~~~l~~~~ 180 (425)
T 1vp4_A 113 IFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAIN--------AFRQYLA--NFVVVPLED-D-GMDLNVLERKLSEFD 180 (425)
T ss_dssp EEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTTC--EEEEEEEET-T-EECHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--EEEEeccCC-C-CCCHHHHHHHHHhhh
Confidence 346665 89999999999999999999998876531 2334454 455555653 3 3999999998875
Q ss_pred -----hCCcEEE-EcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-----CcccEEEeCCC
Q 013217 168 -----FRPKLII-AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----KYCDVVTTTTH 231 (447)
Q Consensus 168 -----~~~klii-~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-----~~~Di~~~s~~ 231 (447)
.++++|+ ++.++||+ ..+ +++|.++|+++|+++|+|++|+.+ ...+....++ ...+++++|+|
T Consensus 181 ~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~s 259 (425)
T 1vp4_A 181 KNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGAL-RYEGETVDPIFKIGGPERVVLLNTFS 259 (425)
T ss_dssp HTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTC-BCSSCCCCCHHHHHCTTTEEEEEEST
T ss_pred hcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccc-cCCCCCCcCHHHhCCCCCEEEEeccc
Confidence 3788884 56777775 444 578999999999999999998543 3222111111 12468899999
Q ss_pred cccC-CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHH
Q 013217 232 KSLR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLV 309 (447)
Q Consensus 232 K~l~-Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~ 309 (447)
|+++ |.|.|++++++ ++.+.+.....+... +++....+++..+++... ....++..+++.++++.+.+.|+
T Consensus 260 K~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 332 (425)
T 1vp4_A 260 KVLAPGLRIGMVAGSK------EFIRKIVQAKQSADL-CSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALE 332 (425)
T ss_dssp TTTCGGGCEEEEECCH------HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceEEEeeCH------HHHHHHHHHhhhhcC-CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 55669999987 677666543222112 234445555555666531 12235667778888999999998
Q ss_pred HC-----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHH
Q 013217 310 EL-----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF 384 (447)
Q Consensus 310 ~~-----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di 384 (447)
+. |+++..+ ...+++|+++.. +.+..++.+.|.++||.+..+...+. .+...+.+|++++.. + ++|+
T Consensus 333 ~~~~~~~g~~~~~~-~~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~g~~f~~-~~~~~~~iRis~~~~-~----~e~i 404 (425)
T 1vp4_A 333 EYFSDIPGVKWVKS-EGGLFIWLTLPE-GFDTWEMFEYAKRKKVFYVPGRVFKV-YDEPSPSMRLSFCLP-P----DEKI 404 (425)
T ss_dssp HHSTTSTTCEECCC-SBSSEEEEECCT-TCCTTTTHHHHHHHTEECEEGGGGCT-TCCCCSEEEEECSSS-C----HHHH
T ss_pred HhCCCCCceEEecC-CccEEEEEEcCC-CCCHHHHHHHHHHCCCEEECchhhcC-CCCCCCeEEEEeCCC-C----HHHH
Confidence 74 6877643 335567888753 44566777778777999875432211 111246899998754 4 8999
Q ss_pred HHHHHHHHHHHHHH
Q 013217 385 VAIADFIHEGVEIT 398 (447)
Q Consensus 385 ~~l~~~i~~~l~~~ 398 (447)
+++++.|++++...
T Consensus 405 ~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 405 VEGIKRLREVVLEY 418 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 120
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.93 E-value=7.2e-24 Score=211.44 Aligned_cols=340 Identities=13% Similarity=0.087 Sum_probs=216.4
Q ss_pred cCeeEecCCCCC-CHHHHHHHhhhhhcc--------C--CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC----CCCCc
Q 013217 21 KSLELIASENFT-SRAVMEAVGSCLTNK--------Y--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENK 85 (447)
Q Consensus 21 ~~i~l~~~~n~~-~~~v~~a~~~~~~~~--------~--~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g----~~~~~ 85 (447)
..|.|..++|+. ++.+.+++....... . ...|+.. ....++++.+.+++.+.+| ++++.
T Consensus 37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~------~g~~~lr~~la~~~~~~~g~~~~~~~~~ 110 (428)
T 1iay_A 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDY------HGLPEFRKAIAKFMEKTRGGRVRFDPER 110 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCT------TCCHHHHHHHHHHHHHHTTTCSCCCTTS
T ss_pred ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCChhh
Confidence 346787888875 456777776432100 0 0122221 1134566555566666666 44543
Q ss_pred cceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHH
Q 013217 86 WGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEK 163 (447)
Q Consensus 86 ~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~ 163 (447)
|.+++|+ +++..++.++++|||+|++..|.|.++... .....|. ++++++.++ +++.+|++++++
T Consensus 111 ----i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~-------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~ 177 (428)
T 1iay_A 111 ----VVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD-------LRWRTGV--QLIPIHCESSNNFKITSKAVKE 177 (428)
T ss_dssp ----CEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH-------TTTTTCC--EEEEECCCTTTTTCCCHHHHHH
T ss_pred ----EEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHH-------HHHhcCC--EEEEeecCCccCCcCCHHHHHH
Confidence 3346766 899999999999999999999988765310 1113444 555555653 245789999999
Q ss_pred Hhhhh-----CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC----Cc-------
Q 013217 164 TAILF-----RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KY------- 222 (447)
Q Consensus 164 ~~~~~-----~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~----~~------- 222 (447)
++++. ++++|+++.++||+ ..+ +++|.++|+++|+++|+|++|..+ ...+....++ ..
T Consensus 178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
T 1iay_A 178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT-VFDTPQFVSIAEILDEQEMTYCN 256 (428)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG-CCSSSCCCCHHHHHTSGGGTTSC
T ss_pred HHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc-ccCCCCccCHHHhccccccccCC
Confidence 88752 68888888777764 667 899999999999999999998543 2222111111 01
Q ss_pred cc--EEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc--ChhHHHHHHH
Q 013217 223 CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKVYQNK 296 (447)
Q Consensus 223 ~D--i~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~--~~~~~~~~~~ 296 (447)
.| +++.|+||++ +|.|.|+++++++ ++.+.+.....+ .+.+....+++..+++... ...+++..++
T Consensus 257 ~d~viv~~s~sK~~g~~Glr~G~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 328 (428)
T 1iay_A 257 KDLVHIVYSLSKDMGLPGFRVGIIYSFND-----DVVNCARKMSSF---GLVSTQTQYFLAAMLSDEKFVDNFLRESAMR 328 (428)
T ss_dssp TTSEEEEEESTTTSSCGGGCEEEEEESCH-----HHHHHHHHHHTT---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecchhhcCCCCceEEEEEeCCH-----HHHHHHHHHHhc---ccCCHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 47 8899999998 5667799998542 676666554322 1234444444443443210 1124567778
Q ss_pred HHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCC-----CCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEe
Q 013217 297 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG-----IDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIG 370 (447)
Q Consensus 297 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig 370 (447)
+.++++.+.+.|.+.|+++..+ ....++|+++.... .+..++.+.|.+ +||.+..+...+. ..++.+|++
T Consensus 329 ~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~---~~~~~iRis 404 (428)
T 1iay_A 329 LGKRHKHFTNGLEVVGIKCLKN-NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC---QEPGWFRVC 404 (428)
T ss_dssp HHHHHHHHHHHHHHTTCCBCCC-SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC---SSSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcccCC-CeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEE
Confidence 8889999999998888876543 23556777775321 123467777765 5999975422211 124589999
Q ss_pred cCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 371 SPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 371 ~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
++ .++ +++++++++.|+++++.
T Consensus 405 ~~-~~~----~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 405 FA-NMD----DGTVDIALARIRRFVGV 426 (428)
T ss_dssp CS-SSC----HHHHHHHHHHHHHHHHT
T ss_pred Ee-cCC----HHHHHHHHHHHHHHHhc
Confidence 87 344 99999999999988763
No 121
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.93 E-value=3.3e-24 Score=213.05 Aligned_cols=341 Identities=14% Similarity=0.106 Sum_probs=218.2
Q ss_pred cCeeEecCC------CCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH------cC--CCCCcc
Q 013217 21 KSLELIASE------NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA------FN--LDENKW 86 (447)
Q Consensus 21 ~~i~l~~~~------n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~------~g--~~~~~~ 86 (447)
..|+|..+. ...++.+++++...+.+....+|+.. ....++++...+++.+. .| ++++.
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~- 106 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPT------VGSPEAREAVATWWRNSFVHKEELKSTIVKDN- 106 (416)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCT------TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG-
T ss_pred CeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCC------CCCHHHHHHHHHHHHhhhcccccCCCCCCcce-
Confidence 457776554 24589999999887754222234321 11234554334444421 12 34432
Q ss_pred ceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHH
Q 013217 87 GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKT 164 (447)
Q Consensus 87 ~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~ 164 (447)
|.+++|+ +|+..++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|+++|+++
T Consensus 107 ---v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~ 173 (416)
T 1bw0_A 107 ---VVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET--------VCKAYGI--GMHFYNCRPENDWEADLDEIRRL 173 (416)
T ss_dssp ---EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHHH
T ss_pred ---EEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH--------HHHHcCc--EEEEeecCcccCCCCCHHHHHHH
Confidence 3345654 89999999999999999999998876531 2334454 4445555433 467999999999
Q ss_pred hhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc----CCCCCC-----cccEEEeCC
Q 013217 165 AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV----VADPFK-----YCDVVTTTT 230 (447)
Q Consensus 165 ~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~----~~~~~~-----~~Di~~~s~ 230 (447)
+++ ++++|+++.++||+ ..+ +++|.++|+++|+++|+|++|.. +...+. ...++. ..+++++|+
T Consensus 174 l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~ 251 (416)
T 1bw0_A 174 KDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG-MVFKGKDPNATFTSVADFETTVPRVILGGT 251 (416)
T ss_dssp CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT-CBCCSSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred hcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCCCCccCHHHccCCCcEEEEecc
Confidence 976 78888888777775 666 89999999999999999999754 333322 111121 124788999
Q ss_pred Cccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH
Q 013217 231 HKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL 308 (447)
Q Consensus 231 ~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 308 (447)
||++ +|.|.|+++++++......+...+..... ...+++....+++..+++.....++++..+++.++++.+.+.|
T Consensus 252 sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 329 (416)
T 1bw0_A 252 AKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGM--LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHI 329 (416)
T ss_dssp TTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHH--HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhc--cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 46678999987730000012222221100 1124456666666667764333456778888999999999999
Q ss_pred HHC-CcEeeeCCCCCeeEEecCCC----CCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217 309 VEL-GYKLVSGGSDNHLVLVDLRP----MGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK 382 (447)
Q Consensus 309 ~~~-g~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~ 382 (447)
++. |+.+..+ ....++|+.+.. ...+..++.+.| +++||.+..+...+ .++.+|+++. ++ ++
T Consensus 330 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-----~~~~iRis~~--~~----~e 397 (416)
T 1bw0_A 330 GECIGLAPTMP-RGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-----APGFTRLTTT--RP----VE 397 (416)
T ss_dssp TTSTTEEECCC-CBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECC--SC----HH
T ss_pred HhCCCCcccCC-CeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC-----CCCeEEEEec--CC----HH
Confidence 885 8876543 234456666532 123566777766 68999996543221 1458999973 33 88
Q ss_pred HHHHHHHHHHHHHHH
Q 013217 383 EFVAIADFIHEGVEI 397 (447)
Q Consensus 383 di~~l~~~i~~~l~~ 397 (447)
++++.++.|.++++.
T Consensus 398 ~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 398 VYREAVERIKAFCQR 412 (416)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888764
No 122
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.93 E-value=2.7e-24 Score=215.89 Aligned_cols=341 Identities=14% Similarity=0.109 Sum_probs=209.8
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc--CCCCCccceeeecCCc
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPLSG 95 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~--g~~~~~~~~~v~~~sG 95 (447)
+..|+|..+++. .+|.|++++...+.+... ..+...|+......++++.+.+++. + +++++ .|.+++|
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~----~i~~t~G 140 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAAAGLAT--REGYSGYGAEQGQGALREAVASTFY--GHAGRAAD----EIFISDG 140 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHHHGGGG--SCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGG----GEEEESC
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcc--ccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHH----HEEEccC
Confidence 356888777663 589999999887764210 0111112222223455543333333 3 44554 3344677
Q ss_pred H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccce--------eEEEecccCCC-CCCCCHHHHHHHh
Q 013217 96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY--------FESMPYRLDES-TGLVDYDMLEKTA 165 (447)
Q Consensus 96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~-~~~id~~~l~~~~ 165 (447)
+ +++..+ .++++|||+|++.+|.|.++.. .+...|.. ++++.++++++ +...|++++
T Consensus 141 ~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 207 (449)
T 3qgu_A 141 SKCDIARI-QMMFGSKPTVAVQDPSYPVYVD--------TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA---- 207 (449)
T ss_dssp HHHHHHHH-HHHHCSSSCEEEEESCCTHHHH--------HHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC----
T ss_pred HHHHHHHH-HHHhCCCCEEEEcCCCChhHHH--------HHHHcCCcccccccccceeEEEecccccCCcCChhHc----
Confidence 6 777766 8889999999999999877642 12233332 11445555533 344554432
Q ss_pred hhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC------CcccEEEeCCCccc
Q 013217 166 ILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDVVTTTTHKSL 234 (447)
Q Consensus 166 ~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~------~~~Di~~~s~~K~l 234 (447)
.++++|+++.++||+ ..+ +++|+++|+++|+++|+|++|.. +...+..+.++ ...++++.|++|++
T Consensus 208 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 284 (449)
T 3qgu_A 208 --KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYAL-YISNPDCPKTIYEIPGADEVAIETCSFSKYA 284 (449)
T ss_dssp --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG-GCCCTTSCSSGGGSTTGGGTEEEEEECSGGG
T ss_pred --CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHh-hhcCCCCCCCHhhccCCCCcEEEEecchhhc
Confidence 378999998888876 444 78888999999999999999854 33332211111 13568999999997
Q ss_pred --CCCCCceEEeecCCcch--hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217 235 --RGPRGGMIFFKKDPVLG--VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE 310 (447)
Q Consensus 235 --~Gp~gG~i~~~~~~~~~--~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 310 (447)
+|+|.|+++++++.... ..+...+....... .++++....++...++........++..+++.++++.+.+.|++
T Consensus 285 g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 363 (449)
T 3qgu_A 285 GFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTC-FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE 363 (449)
T ss_dssp TCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHS-CCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcc-cCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999998742100 00011222211111 22334444444444444311134567788899999999999999
Q ss_pred CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217 311 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD 389 (447)
Q Consensus 311 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~ 389 (447)
.|+++..+ ...+++|+++. +.+..++.+.| +++||.+..+..++ +...++||++.. ++ +++++++++
T Consensus 364 ~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~~~~gI~v~pg~~f~---~~~~~~iRis~~--~~----~e~i~~~l~ 431 (449)
T 3qgu_A 364 MGFSVYGG-DDAPYIWVGFP--GKPSWDVFAEILERCNIVTTPGSGYG---PAGEGFVRASAF--GS----RENILEAVR 431 (449)
T ss_dssp TTCCEEES-SSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGGC---GGGTTEEEEECC--SC----HHHHHHHHH
T ss_pred CCCeeeCC-CCeeEEEEECC--CCCHHHHHHHHHHHCCEEEecchHhC---CCCCCeEEEEec--CC----HHHHHHHHH
Confidence 99887754 34567788876 55677776655 55699987543222 123468999942 34 899999999
Q ss_pred HHHHHHHH
Q 013217 390 FIHEGVEI 397 (447)
Q Consensus 390 ~i~~~l~~ 397 (447)
.|+++++.
T Consensus 432 ~l~~~~~~ 439 (449)
T 3qgu_A 432 RFKEAYGK 439 (449)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99888763
No 123
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.93 E-value=9.6e-24 Score=211.03 Aligned_cols=346 Identities=15% Similarity=0.073 Sum_probs=214.3
Q ss_pred CeeEecCCCCC-CHHHHHHHhhhhhccCC--CCCCCC---cccCchhHHHHHHHHHHHHHHHHcC----CCCCccceeee
Q 013217 22 SLELIASENFT-SRAVMEAVGSCLTNKYS--EGLPGK---RYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNVQ 91 (447)
Q Consensus 22 ~i~l~~~~n~~-~~~v~~a~~~~~~~~~~--~g~~~~---~~~~g~~~~~~le~~~~~~~~~~~g----~~~~~~~~~v~ 91 (447)
.|+|-.++|.. .+.+.+++......... +|..+. ..|+......++++...+++.+.++ ++++.+ +.
T Consensus 40 ~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v---~~ 116 (435)
T 3piu_A 40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHL---VL 116 (435)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGE---EE
T ss_pred eEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHE---EE
Confidence 46777788865 45666666654331110 010000 0122222234566555555555444 444432 22
Q ss_pred cCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccc-cccceeEEEecccCCC-CCCCCHHHHHHHhhhh-
Q 013217 92 PLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDES-TGLVDYDMLEKTAILF- 168 (447)
Q Consensus 92 ~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~- 168 (447)
+++|++|+..++.++++|||+|++..|.|.++.. .+. ..|. ++++++++++ ++.+|+++|++++++.
T Consensus 117 ~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 186 (435)
T 3piu_A 117 TAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGV--EIVPIHCTSSNGFQITETALEEAYQEAE 186 (435)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCC--EEEEEECCGGGTSCCCHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHhcCCCCeEEECCCccccHHH--------HHHHhcCC--EEEEeeCCCccCCcCCHHHHHHHHHHHH
Confidence 3444599999999999999999999998876532 122 3454 5555556532 4568999999998763
Q ss_pred ----CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---------------Cccc
Q 013217 169 ----RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---------------KYCD 224 (447)
Q Consensus 169 ----~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---------------~~~D 224 (447)
++++|+++.++||+ ..+ +++|.++|++||+++|+|++|..+ ...+....++ ....
T Consensus 187 ~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 265 (435)
T 3piu_A 187 KRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT-AFSSPSFISVMEVLKDRNCDENSEVWQRV 265 (435)
T ss_dssp HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-CCSSSCCCCHHHHHHC-------CGGGGE
T ss_pred hcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCCCCCcCHHHhccccccccccCCCCCE
Confidence 78898888777775 444 578888999999999999998543 3222111111 1123
Q ss_pred EEEeCCCccc--CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc--ChhHHHHHHHHHHH
Q 013217 225 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKVYQNKVVSN 300 (447)
Q Consensus 225 i~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~--~~~~~~~~~~~~~~ 300 (447)
+++.|+||++ +|.|.|+++++++ ++.+.+......+ +.+....++++.++.... ....++..+++.++
T Consensus 266 i~i~s~sK~~g~~G~r~G~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 337 (435)
T 3piu_A 266 HVVYSLSKDLGLPGFRVGAIYSNDD-----MVVAAATKMSSFG---LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR 337 (435)
T ss_dssp EEEEESSSSSCCGGGCEEEEEESCH-----HHHHHHHHHGGGS---CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeecccCCCceeEEEEEeCCH-----HHHHHHHHHhhcC---CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 8889999998 4667799998653 5666555432221 223333344444443211 11235667788888
Q ss_pred HHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCC-----CHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGI-----DGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAM 374 (447)
Q Consensus 301 ~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~ 374 (447)
++.+.+.|.+.|+++..+ ...+++|+++..... +..++.+.| +++||.+..+..++ +..++.+|+++...
T Consensus 338 ~~~l~~~L~~~g~~~~~~-~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRi~~~~~ 413 (435)
T 3piu_A 338 QKKLVSGLQKSGISCLNG-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCH---CTEPGWFRVCFANL 413 (435)
T ss_dssp HHHHHHHHHTTTCEECCC-CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGT---CSSTTEEEEECSSS
T ss_pred HHHHHHHHHhcCCcccCC-CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccC---CCCCCEEEEEeeCC
Confidence 899999999889887654 334667777753110 234565655 45599997543222 12356899998654
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 375 TTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 375 ~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+ +++++++++.|.++++..
T Consensus 414 -~----~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 414 -P----ERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp -C----HHHHHHHHHHHHHHHHHH
T ss_pred -C----HHHHHHHHHHHHHHHHHH
Confidence 5 899999999999988643
No 124
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.93 E-value=5.1e-24 Score=216.65 Aligned_cols=334 Identities=11% Similarity=0.016 Sum_probs=213.5
Q ss_pred CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh----
Q 013217 31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---- 106 (447)
Q Consensus 31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al---- 106 (447)
..++++++++.....|. + ...+.......++|+.+++++++++|+++.+. .+.+++|++||..++.+.
T Consensus 111 ~~~~~v~~~~~~~~~n~----~--~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~--~~~t~ggt~a~~~al~~ar~~~ 182 (497)
T 2qma_A 111 PLMPAVAAEAMIAALNQ----S--MDSWDQASSATYVEQKVVNWLCDKYDLSEKAD--GIFTSGGTQSNQMGLMLARDWI 182 (497)
T ss_dssp CBHHHHHHHHHHHHHCC----C--TTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCE--EEEESSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhcc----c--ccchhhChHHHHHHHHHHHHHHHHhCCCCCCC--eEEcCCchHHHHHHHHHHHHHH
Confidence 45677877776554442 1 11133345677899888999999999975222 233466679998888763
Q ss_pred c---------CC------CC-EEEEecCCCCcccCCCcccccccccccccee-EEEecccCCCCCCCCHHHHHHHhhhh-
Q 013217 107 L---------KP------HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF- 168 (447)
Q Consensus 107 ~---------~p------gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~~~~~- 168 (447)
+ .+ || +|++..+.|.+... .+...|.+. +++.++++ +++.+|+++|++++++.
T Consensus 183 ~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~--------~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~ 253 (497)
T 2qma_A 183 ADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQK--------SASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQAK 253 (497)
T ss_dssp HHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHH--------HHHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHHH
T ss_pred HHhhcccchhhcccccccCCeEEEECCCchHHHHH--------HHHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHHH
Confidence 3 13 46 78888777765431 223344322 34455565 46889999999998763
Q ss_pred --CCc--EEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccC--CCCCCcccEEEeCCCcccCCCCC-
Q 013217 169 --RPK--LIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRG- 239 (447)
Q Consensus 169 --~~k--lii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~~~~Di~~~s~~K~l~Gp~g- 239 (447)
.++ +|+++.++++ + ..|+++|+++|+++|+++++|++|+.+....+.. ...+..+|++++|+|||+.+|.+
T Consensus 254 ~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~ 333 (497)
T 2qma_A 254 AEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISC 333 (497)
T ss_dssp HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSC
T ss_pred HCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcce
Confidence 233 6777644444 3 7899999999999999999999987765543311 01123579999999999988876
Q ss_pred ceEEeecCCcchhhHHHHhhhc---cCCCCCCCCcHHH----------HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Q 013217 240 GMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHT----------IGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS 306 (447)
Q Consensus 240 G~i~~~~~~~~~~~~~~~i~~~---~~~~~~g~p~~~~----------~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~ 306 (447)
|+++++++ ...+.+... ........++... ..+++.+++.+...+++++.++..++++++.+
T Consensus 334 G~l~~~~~-----~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~ 408 (497)
T 2qma_A 334 GALLVNDK-----SNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVAD 408 (497)
T ss_dssp EEEEESCG-----GGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCH-----HHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99998874 322222210 0000000122111 12345567766656778889999999999999
Q ss_pred HHHH-CCcEeeeCCCCCeeEEecCCCCCCCH----HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-CccccCCCC
Q 013217 307 RLVE-LGYKLVSGGSDNHLVLVDLRPMGIDG----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFS 380 (447)
Q Consensus 307 ~L~~-~g~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~ 380 (447)
.|++ .|++++.+. ...++++.+.+.+.+. .++.+.|.+.|+.+.....+ .....+|+++ +..++
T Consensus 409 ~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~-----~g~~~lRis~~~~~~t---- 478 (497)
T 2qma_A 409 MIRTNDQFELLAEP-SLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIV-----DGKTALKFTILNPCLT---- 478 (497)
T ss_dssp HHHTCTTEEECSCC-SSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEE-----TTEEEEEEECCCTTCC----
T ss_pred HHhhCCCeEEEcCC-CceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEE-----CCEEEEEEEecCCCCC----
Confidence 9998 488886543 2345555554322221 34566777889877421111 1134799997 66777
Q ss_pred HHHHHHHHHHHHHHHH
Q 013217 381 EKEFVAIADFIHEGVE 396 (447)
Q Consensus 381 ~~di~~l~~~i~~~l~ 396 (447)
++|++++.+.|++++.
T Consensus 479 ~edi~~~~~~l~~~~~ 494 (497)
T 2qma_A 479 TSDFESLLSKINMLAV 494 (497)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 125
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.93 E-value=1.2e-24 Score=219.75 Aligned_cols=312 Identities=11% Similarity=-0.021 Sum_probs=207.4
Q ss_pred CchhHHHHHHHHHHHHHHHHcCCCCCc------cceeeecCCcHHHHHHHHHHhc-------------------CCCCEE
Q 013217 59 GGNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAIL-------------------KPHDRI 113 (447)
Q Consensus 59 ~g~~~~~~le~~~~~~~~~~~g~~~~~------~~~~v~~~sGs~a~~~~~~al~-------------------~pgd~V 113 (447)
...+...++|+.+.+++++++|.+.+. ....+.+++||+||+.++.+.. .|++.|
T Consensus 106 ~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 185 (475)
T 3k40_A 106 IASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVG 185 (475)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEE
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEE
Confidence 345667899999999999999998531 0013445778899988777652 145789
Q ss_pred EEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEcCC-CCCC-CCCh
Q 013217 114 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGAS-AYPR-DFDY 186 (447)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~-----~klii~~~~-~~~~-~~~~ 186 (447)
++....|.+.. +.+...|. +++.++++ +++ +|+++|++++++.+ |.+|+++.+ +..+ ..|+
T Consensus 186 i~s~~~H~s~~--------~~~~~~g~--~~~~v~~d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l 253 (475)
T 3k40_A 186 YCSDQAHSSVE--------RAGLLGGV--KLRSVQSE-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYL 253 (475)
T ss_dssp EEETTSCHHHH--------HHHHHHTC--EEEEECCB-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred EECCCchHHHH--------HHHHHcCC--ceEEEECC-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCH
Confidence 99988876643 23344554 55566676 467 99999999997631 666666633 3333 7899
Q ss_pred HHHHHHHHHhCCEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhH-HHHhhh-
Q 013217 187 PRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL-ESAINN- 260 (447)
Q Consensus 187 ~~i~~ia~~~g~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~-~~~i~~- 260 (447)
++|+++|++||+++++|+||+.+....+... ..+..+|++++++|||+.+|.| |+++++++ .. .+.+..
T Consensus 254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~-----~~l~~~~~~~ 328 (475)
T 3k40_A 254 DECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDP-----SWVVNAFNVD 328 (475)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSG-----GGC-------
T ss_pred HHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCH-----HHHHHHhcCC
Confidence 9999999999999999999877654332211 1223579999999999999988 88888874 22 111110
Q ss_pred --cc------------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeE
Q 013217 261 --AV------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLV 325 (447)
Q Consensus 261 --~~------------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~ 325 (447)
.. .....++.. ....+++.+++.+...+++++.++..++++++++.|++ .|++++.+. ...++
T Consensus 329 ~~yl~~~~~~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-~~~iv 406 (475)
T 3k40_A 329 PLYLKHDMQGSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-NMGLV 406 (475)
T ss_dssp --------------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-BTTEE
T ss_pred ccccCCCcCCCCCCcccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-ceEEE
Confidence 00 000111211 23455667777766677889999999999999999998 499987643 34455
Q ss_pred EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc-ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM-TTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~-~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
++.+...+....++.+.|.+.|+.+-. |.. ......+|+++... ++ ++|++++++.|+++.+..
T Consensus 407 ~f~~~~~~~~~~~l~~~L~~~g~~~~~---~~~--~~g~~~lR~~~~~~~tt----~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 407 CFRLKGSNERNEALLKRINGRGHIHLV---PAK--IKDVYFLRMAICSRFTQ----SEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp EEEESSCHHHHHHHHHHHHHHTSCBCE---EEE--ETTEEEEEEECCCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHHhCCcEEEE---eeE--ECCEEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHHH
Confidence 555543222346677778777754311 111 11235799996533 45 999999999999887643
No 126
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.93 E-value=5.6e-24 Score=209.61 Aligned_cols=321 Identities=14% Similarity=0.143 Sum_probs=212.3
Q ss_pred eeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHH
Q 013217 23 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 102 (447)
Q Consensus 23 i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~ 102 (447)
+++-.+...+++.+++++...+.+.+ | ...+...+++ +.+++++|.+. .+.++||++|+..+
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~a~~~a 65 (390)
T 3b8x_A 4 INYPLASSTWDDLEYKAIQSVLDSKM--------F-TMGEYVKQYE----TQFAKTFGSKY-----AVMVSSGSTANLLM 65 (390)
T ss_dssp -CBCSCCCCCCHHHHHHHHHHHHHTC--------C-SSCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHHHHHHcCC--------C-CCChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHH
Confidence 33334677889999999988876521 1 1223344554 67888999863 35569999999999
Q ss_pred HHHh-------cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217 103 YTAI-------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 175 (447)
Q Consensus 103 ~~al-------~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~ 175 (447)
+.++ +++||+|+++.++|.++.. .+...|. +++.++++++++.+|+++|++++++ +|++|++
T Consensus 66 l~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 66 IAALFFTKKPRLKKGDEIIVPAVSWSTTYY--------PLQQYGL--RVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp HHHTTSSSSCSCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred HHHHHhhhhcCCCCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 9998 8899999999998877642 2234454 5666667765688999999999987 8899888
Q ss_pred cCCCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCC--CcccCCCCCceEEeecCCcchhh
Q 013217 176 GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVE 253 (447)
Q Consensus 176 ~~~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~--~K~l~Gp~gG~i~~~~~~~~~~~ 253 (447)
+. ..+...|+++|.++|+++|+++++|++|+.|....+ ..... ..|+.++|. +|.+.++.||+++++++ +
T Consensus 135 ~~-~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~g~-~~~~~~~s~~~~k~~~~g~gG~~~~~~~-----~ 206 (390)
T 3b8x_A 135 VN-LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNN-KCAGT-FGLMGTFSSFYSNHIATMEGGCIVTDDE-----E 206 (390)
T ss_dssp EC-GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETT-EETTS-SSSEEEEECCTTSSSCSSSCEEEEESCH-----H
T ss_pred EC-CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECC-ccccc-ccceEEEEccCCCCCccCCceEEEeCCH-----H
Confidence 63 122357999999999999999999999987876532 11111 135555442 45566778899998863 4
Q ss_pred HHHHhhhccCCC------------------------------C-CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217 254 LESAINNAVFPG------------------------------L-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR 302 (447)
Q Consensus 254 ~~~~i~~~~~~~------------------------------~-~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~ 302 (447)
+.+++......+ . .++++....++++ ++ ..+++..++..++++
T Consensus 207 l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l-----~~l~~~~~~~~~~~~ 280 (390)
T 3b8x_A 207 IYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE-QL-----KKLPRFISVRRKNAE 280 (390)
T ss_dssp HHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH-HH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHH-HH-----HHHHHHHHHHHHHHH
Confidence 544433211111 0 1123333332222 22 235677888899999
Q ss_pred HHHHHHHHC-CcEeeeCCCC-C-eeEEecCCC-CCCCHHHHHHHHhhcCeEEccCCCCCCC--C-CC-------------
Q 013217 303 ALASRLVEL-GYKLVSGGSD-N-HLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDK--S-AL------------- 362 (447)
Q Consensus 303 ~l~~~L~~~-g~~~~~~~~~-~-~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~-~~------------- 362 (447)
++.+.|.+. |+++...... + +.+++.+.. .+.+.+++.+.|.++||.++... |+.. . +.
T Consensus 281 ~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 359 (390)
T 3b8x_A 281 YFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIV-TGNFLKNTDVLKYFDYTVHNNVD 359 (390)
T ss_dssp HHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCST-TSSGGGCHHHHTTCEEEESSCCH
T ss_pred HHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeec-CCchhhcchhhhcCCCCCcCCCh
Confidence 999999884 7776543211 2 224444442 14578889999999999998632 1110 1 00
Q ss_pred -----CCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217 363 -----VPGGIRIGSPAMTTRGFSEKEFVAIADFI 391 (447)
Q Consensus 363 -----~~~~iRig~~~~~~~g~~~~di~~l~~~i 391 (447)
..+.||++++..+| ++|++++++.|
T Consensus 360 ~~~~~~~~~l~l~~~~~~t----~~di~~i~~~l 389 (390)
T 3b8x_A 360 NAEYLDKNGLFVGNHQIEL----FDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHEEEEECCSSCC----HHHHHHHHHHT
T ss_pred HHHHHhcCEEEeeCCCCCC----HHHHHHHHHhh
Confidence 01359999888777 99999999876
No 127
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.93 E-value=5.5e-25 Score=221.29 Aligned_cols=301 Identities=12% Similarity=0.078 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcC--CCCEEEEecCCCCcccCCCccccccccccccc
Q 013217 64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 140 (447)
Q Consensus 64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~--pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 140 (447)
...+++.+++++++++|++++ + +.+++|+ .+|.+++.++.. +|+.|++++++|.+.. +.+...|.
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~-~---~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~--------~~~~~~G~ 198 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH-A---IATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGM 198 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE-E---EEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCCCC-E---EEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH--------HHHHHcCC
Confidence 566777889999999999864 2 2335567 577766666543 7788998888877642 13344565
Q ss_pred eeEEEecc-cCCCCCCCCHHHHHHHh-hh---hCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhc---cc
Q 013217 141 YFESMPYR-LDESTGLVDYDMLEKTA-IL---FRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS---GL 210 (447)
Q Consensus 141 ~~~~~~~~-~~~~~~~id~~~l~~~~-~~---~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~---g~ 210 (447)
.+..++.. .+ +++.+|+++|++++ ++ .++.+|+++.++|++ ..|+++|.++|+++|+++++|+||+. |.
T Consensus 199 ~~~~v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~ 277 (456)
T 2z67_A 199 NMRLVETVLDG-DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY 277 (456)
T ss_dssp EEEEECCEEET-TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred CceEEEEeccC-CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHh
Confidence 44433321 13 56789999999999 42 367777777665543 78999999999999999999987642 22
Q ss_pred cccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChh
Q 013217 211 VAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE 289 (447)
Q Consensus 211 ~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~ 289 (447)
.+.+....+. ++|++++|+|||+.||.| |+++++++ ++.+.+.... .+. .......++++++..+...+
T Consensus 278 ~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~-----~~~~~l~~~~-~g~---~~~~~~~~~~aal~~l~~~~ 347 (456)
T 2z67_A 278 LEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDA-----EFIKEISLSY-PGR---ASATPVVNTLVSLLSMGSKN 347 (456)
T ss_dssp HHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHTTS-CSC---BCSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCH-----HHHhhcCcCC-CCC---CCCCHHHHHHHHHHHHHHHH
Confidence 2221111111 489999999999888776 99999653 6666664432 222 11122344555666555567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCe---EEccCC--CCCCC-
Q 013217 290 FKVYQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASI---TLNKNS--VPGDK- 359 (447)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI---~v~~~~--~p~~~- 359 (447)
+++..++..++++++.+.|++. |+.++.+ . .++++++...+. ..++.+.|.+.|| .+.... .++..
T Consensus 348 ~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~-~--~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~ 423 (456)
T 2z67_A 348 YLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV-E--SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYL 423 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC-C--CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCEecCC-C--CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCccccccc
Confidence 7888999999999999999885 8766543 2 344555521121 3678888888876 332000 00000
Q ss_pred CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 360 ~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
.....+.+|++++..++ ++|++++++.|++++
T Consensus 424 ~~~~~~~vr~s~~~~~t----~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 424 GTYTHDYIVMNAAIGVR----TEDIVNSVSKLEKIL 455 (456)
T ss_dssp SCCSCCEEEEECCTTCC----HHHHHHHHHHHHTC-
T ss_pred cccCcchhhhhhhcCCC----HHHHHHHHHHHHHHh
Confidence 01123589999887777 999999999987654
No 128
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.93 E-value=2e-24 Score=209.82 Aligned_cols=323 Identities=13% Similarity=0.096 Sum_probs=210.3
Q ss_pred cCeeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHH
Q 013217 21 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 99 (447)
Q Consensus 21 ~~i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~ 99 (447)
..+.|..+.+ ..++.+++++.+.+.+ |..+. +.. .+.+.+++++++++|.+++.+ +.+++|++|+
T Consensus 14 ~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~~------g~~----~~~~~~~~~l~~~~g~~~~~v---~~~~g~t~a~ 79 (359)
T 1svv_A 14 KPYSFVNDYSVGMHPKILDLMARDNMT-QHAGY------GQD----SHCAKAARLIGELLERPDADV---HFISGGTQTN 79 (359)
T ss_dssp -CEECSCSCSSCCCHHHHHHHHHHTTC-CCCST------TCS----HHHHHHHHHHHHHHTCTTSEE---EEESCHHHHH
T ss_pred eeEEecCCCcCCCCHHHHHHHHHHHhh-ccccc------ccc----HHHHHHHHHHHHHhCCCCccE---EEeCCchHHH
Confidence 3456644443 5689999999887753 32111 112 334455678999999876532 2345666999
Q ss_pred HHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh------CCcEE
Q 013217 100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPKLI 173 (447)
Q Consensus 100 ~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~------~~kli 173 (447)
..++.++++|||+|++.++.|.++.... .+...|. +++.++.+ ++.+|+++|++++++. ++++|
T Consensus 80 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~------~~~~~g~--~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 80 LIACSLALRPWEAVIATQLGHISTHETG------AIEATGH--KVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp HHHHHHHCCTTEEEEEETTSHHHHSSTT------HHHHTTC--CEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred HHHHHHHhCCCCEEEEcccchHHHHHHH------HHhcCCC--eeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 9999999999999999999887764310 1233454 45555554 5789999999999873 28999
Q ss_pred EEcCCCCCC-CCC---hHHHHHHHHHhCCEEEEehhh---hccccccccCCCCC---CcccEEEeCCCcccCCCCC-ceE
Q 013217 174 IAGASAYPR-DFD---YPRMRQIADAVGALLMMDMAH---ISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMI 242 (447)
Q Consensus 174 i~~~~~~~~-~~~---~~~i~~ia~~~g~~livD~a~---~~g~~~~~~~~~~~---~~~Di~~~s~~K~l~Gp~g-G~i 242 (447)
+++++++++ ..+ +++|.++|+++|+++++|++| ..|....+ ...+ ..+|++++|+||+ ++|.| |++
T Consensus 150 ~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l 226 (359)
T 1svv_A 150 YISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDMFYIGATKA-GGMFGEALI 226 (359)
T ss_dssp EEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSEEEEECTTT-TCSSCEEEE
T ss_pred EEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCEEEEecccC-CCCCceEEE
Confidence 888664334 666 889999999999999999998 33332211 1110 1478999999997 66777 999
Q ss_pred EeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCC
Q 013217 243 FFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD 321 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 321 (447)
++++ ++.+.+.... ..+...+......++++.+ +...++++..+++.++++++.+.|+..|+++..+ ..
T Consensus 227 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~ 296 (359)
T 1svv_A 227 ILND------ALKPNARHLIKQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGLEACGIRLAWP-SA 296 (359)
T ss_dssp ECSG------GGCTTHHHHHHHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-CS
T ss_pred EEcc------cHHHHHHHHHhcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHhccCCeEEccC-Cc
Confidence 9877 4444443321 0111111122222232222 3334567788899999999999995578877643 23
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhhc-CeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 322 NHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 322 ~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
.+++|+++. .++.+.|.+. ||.+-.. .+ ...+.+|++++..++ ++|++++++.|+++++
T Consensus 297 ~~~~~~~~~------~~~~~~l~~~~gi~v~~~-~~-----~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 297 SNQLFPILE------NTMIAELNNDFDMYTVEP-LK-----DGTCIMRLCTSWATE----EKECHRFVEVLKRLVA 356 (359)
T ss_dssp SSEECBEEE------HHHHHHHTTTEECEEEEE-ET-----TTEEEEEEECCTTCC----HHHHHHHHHHHHHC--
T ss_pred cceEEEEcC------HHHHHHHHHhcCEEEEec-cc-----CCCceEEEEccCcCC----HHHHHHHHHHHHHHHh
Confidence 455555542 4677777666 9998210 01 124579999876666 9999999999988765
No 129
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=7.5e-24 Score=212.30 Aligned_cols=357 Identities=11% Similarity=-0.004 Sum_probs=214.0
Q ss_pred hhcCe-eEecCCCCCCHHHHHHHhhhhhccCCC---CC--CC----CcccCchhHHHHHHHHHHHHHHHHcCC--CCCcc
Q 013217 19 QFKSL-ELIASENFTSRAVMEAVGSCLTNKYSE---GL--PG----KRYYGGNEYIDELETLCQKRALAAFNL--DENKW 86 (447)
Q Consensus 19 ~~~~i-~l~~~~n~~~~~v~~a~~~~~~~~~~~---g~--~~----~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~ 86 (447)
....| +|-.+.+..++.+.+++...+...+.. |. +. .-.|+......++++...+++.+.+|. ++++
T Consensus 30 ~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~- 108 (444)
T 3if2_A 30 SDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSEN- 108 (444)
T ss_dssp SSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG-
T ss_pred CchhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHH-
Confidence 35667 776666666666555554444321111 00 10 001222222345665555666666664 4443
Q ss_pred ceeeecCCcH-HHHHHHHHHhcCCCC--------------EEEEe-cCCCCcccCCCccccccccccccceeEEEecccC
Q 013217 87 GVNVQPLSGS-PANFEVYTAILKPHD--------------RIMGL-DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 150 (447)
Q Consensus 87 ~~~v~~~sGs-~a~~~~~~al~~pgd--------------~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 150 (447)
|.+|+|+ +|+..++.++++||| +|+++ +|.|.++....... . .+.+....+++++++
T Consensus 109 ---i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 181 (444)
T 3if2_A 109 ---IALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEG--Q--HFAAVLPHIDEVTHD 181 (444)
T ss_dssp ---EEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSS--C--CEEECCCEEEEEEET
T ss_pred ---EEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccccc--c--hhhccCceEEecccc
Confidence 3335554 999999999999998 78875 77777764321000 0 122333466666665
Q ss_pred CC----CCCCCHHHHHHH---hhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217 151 ES----TGLVDYDMLEKT---AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD 218 (447)
Q Consensus 151 ~~----~~~id~~~l~~~---~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~ 218 (447)
++ ++.+|+++|+++ +.+ ++++|+++.++||+ ..+ +++|.++|+++|+++|+|++|+.+.........
T Consensus 182 ~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 260 (444)
T 3if2_A 182 GEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDA 260 (444)
T ss_dssp TEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCC
T ss_pred cccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccc
Confidence 32 247999999987 444 78999988777775 667 788999999999999999998532211111110
Q ss_pred --CCCcccEEEeCCCccc-CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcCh-hHHH-H
Q 013217 219 --PFKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKV-Y 293 (447)
Q Consensus 219 --~~~~~Di~~~s~~K~l-~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~-~~~~-~ 293 (447)
.....+++++|+||++ +|.|.|+++.++ ++.+.+.........++ +....+++...++..... ...+ .
T Consensus 261 ~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~l~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~ 333 (444)
T 3if2_A 261 HLNWDNNTILCFSLSKIGLPGMRTGIIVADA------KVIEAVSAMNAVVNLAP-TRFGAAIATPLVANDRIKQLSDNEI 333 (444)
T ss_dssp CCCCCTTEEEEEESTTTTCGGGCCEEEECCH------HHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHTSHHHHHHHHTH
T ss_pred cccCCCCEEEEechhhccCCCCceEEEEECH------HHHHHHHHHHHhccCCC-ChHHHHHHHHHHHcCchhHHHHHHH
Confidence 1124679999999974 466779999877 67666654322111122 222233333333321100 1112 3
Q ss_pred HHHHHHHHHHHHHHHHH----CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--C---CCCC
Q 013217 294 QNKVVSNCRALASRLVE----LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--S---ALVP 364 (447)
Q Consensus 294 ~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~---~~~~ 364 (447)
.+.+.++++.+.+.|.+ .++.+..+ ....++|+++...+++..++.+.|.++||.+..+..++.. . +...
T Consensus 334 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~ 412 (444)
T 3if2_A 334 KPFYQKQATLAVKLLKQALGDYPLMIHKP-EGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAH 412 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSEEEECC-CBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGG
T ss_pred HHHHHHHHHHHHHHHHHhcccCCceEecC-CccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCC
Confidence 44566677777777765 24555443 3456677887654567888999999999999764322111 0 1123
Q ss_pred CeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 365 ~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+.+|++++. + ++++++.++.|.+++...
T Consensus 413 ~~iRis~~~--~----~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 413 ECIRMSIAA--D----EQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp SEEEEESSS--C----HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeC--C----HHHHHHHHHHHHHHHHHH
Confidence 589999875 4 899999999999988754
No 130
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.92 E-value=2e-23 Score=212.57 Aligned_cols=308 Identities=12% Similarity=0.073 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCcHHHHHHHHHHhcC--------CC-----C-EEEEecCCCCcccC
Q 013217 62 EYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILK--------PH-----D-RIMGLDLPHGGHLS 125 (447)
Q Consensus 62 ~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs~a~~~~~~al~~--------pg-----d-~Vl~~~~~~~~~~~ 125 (447)
+...++|+.+++++++++|++ .+. .+.+++||+||..++.++.. +| + +|+++.+.|.+...
T Consensus 128 ~~~~~le~~~~~~la~~~g~~~~~~~---~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~ 204 (504)
T 2okj_A 128 PVFVLMEQITLKKMREIVGWSSKDGD---GIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK 204 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSSCE---EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCC---EEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHH
Confidence 556788988889999999998 432 23345667999988887742 57 6 78888777765421
Q ss_pred CCcccccccccccccee-EEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEcCCCCC-C-CCChHHHHHHHHHhC
Q 013217 126 HGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYP-R-DFDYPRMRQIADAVG 197 (447)
Q Consensus 126 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~~~~~~-~-~~~~~~i~~ia~~~g 197 (447)
.+...|.+. +++.++++ +++.+|+++|++++++. +|++|+++.++++ + ..|+++|+++|+++|
T Consensus 205 --------~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g 275 (504)
T 2okj_A 205 --------AGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 275 (504)
T ss_dssp --------HHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred --------HHHHcCCCcccEEEEecC-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Confidence 223334322 34455565 46899999999999763 5888888865554 3 789999999999999
Q ss_pred CEEEEehhhhccccccccCCCC---CCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCC------
Q 013217 198 ALLMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQ------ 267 (447)
Q Consensus 198 ~~livD~a~~~g~~~~~~~~~~---~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~------ 267 (447)
+|+++|++|+.+.......... +.++|++++++|||+++|.+ |+++++++ ++.+.......+...
T Consensus 276 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 350 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK-----GILQGCNQMCAGYLFQPDKQY 350 (504)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST-----THHHHHHCCCCSSSCCSCCSS
T ss_pred CEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECH-----HHHHHHhcCCCccccCCcccc
Confidence 9999999987766542211111 23689999999999988876 99999874 344332111111110
Q ss_pred ------------CCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeC--CCCCeeEEecCCCC
Q 013217 268 ------------GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG--GSDNHLVLVDLRPM 332 (447)
Q Consensus 268 ------------g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~--~~~~~~~~v~~~~~ 332 (447)
++-.. ...+++++++.+...+++++.++..++++++.+.|++ .|++++.+ ...+.+.+......
T Consensus 351 ~~~~~~~~~~~~~~rr~-~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~ 429 (504)
T 2okj_A 351 DVSYDTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQS 429 (504)
T ss_dssp CGGGCCGGGSSCSSCBC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGG
T ss_pred cCcCCcccCCCCCCCCc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcc
Confidence 00000 0122333444444467888899999999999999988 58988752 22233222221110
Q ss_pred --CC------------CHHHHHHHHhhcCe-EEccCCCCCCCCCCCCCeEEEecC-ccccCCCCHHHHHHHHHHHHHHHH
Q 013217 333 --GI------------DGARVEKILDMASI-TLNKNSVPGDKSALVPGGIRIGSP-AMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 333 --~~------------~~~~~~~~L~~~gI-~v~~~~~p~~~~~~~~~~iRig~~-~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+. ...++.+.|.+.|+ .+......+ ..+.+|+++. ..++ ++|++++.+.|++++.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~t----~edi~~~~~~l~~~~~ 500 (504)
T 2okj_A 430 LRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGD-----KANFFRMVISNPAAT----QSDIDFLIEEIERLGQ 500 (504)
T ss_dssp GSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEECCCCTTCC----HHHHHHHHHHHHHHHT
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECC-----ceEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH
Confidence 10 02457777878885 443211110 1247999985 6777 9999999999987764
No 131
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.92 E-value=1e-23 Score=206.50 Aligned_cols=288 Identities=14% Similarity=0.108 Sum_probs=194.5
Q ss_pred HHHHHHc-CCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC
Q 013217 73 KRALAAF-NLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 151 (447)
Q Consensus 73 ~~~~~~~-g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 151 (447)
+.+++++ +++++.+ +.+++|++|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++
T Consensus 70 ~~la~~~~~~~~~~v---~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~ 136 (375)
T 3op7_A 70 KSVSQLYTGVKPEQI---LQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD--------IPKSLGA--EVDLWQIEE 136 (375)
T ss_dssp HHHHTTSSSCCGGGE---EEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH--------HHHHTTC--EEEEEEEEG
T ss_pred HHHHHHhccCChhhE---EEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEeccc
Confidence 4677776 4555432 223455699999999999999999999998876532 2334454 444555542
Q ss_pred -CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC--Ccc
Q 013217 152 -STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--KYC 223 (447)
Q Consensus 152 -~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~--~~~ 223 (447)
+++.+|+++|++++++ ++++|+++.++||+ ..+ +++|.++|++||+++|+|++|..+ ...+. +... ...
T Consensus 137 ~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~-~~~~~-~~~~~~~~~ 213 (375)
T 3op7_A 137 ENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSF-SELDV-PSIIEVYDK 213 (375)
T ss_dssp GGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCC-SSSCC-CCHHHHCTT
T ss_pred cCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccCC-CchhhhcCC
Confidence 3567899999999987 89999998777775 678 899999999999999999997532 22211 1100 124
Q ss_pred cEEEeCCCcccC--CCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Q 013217 224 DVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC 301 (447)
Q Consensus 224 Di~~~s~~K~l~--Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~ 301 (447)
+++++|++|+++ |.|+|++++++ ++.+.+.........+ ++....++...+++... ...++..+++.+++
T Consensus 214 ~i~~~s~sK~~~~~G~r~G~v~~~~------~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 285 (375)
T 3op7_A 214 GIAVNSLSKTYSLPGIRIGWVAANH------QVTDILRDYRDYTMIC-AGVFDDLVAQLALAHYQ-EILERNRHILEENL 285 (375)
T ss_dssp EEEEEESSSSSSCGGGCCEEEECCH------HHHHHHTTTGGGTTSC-CCHHHHHHHHHHHHTHH-HHHHHHHHHHHHHH
T ss_pred EEEEeEChhhcCCcccceEEEEeCH------HHHHHHHHHHhhhccC-CCcHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 588999999984 66779999976 7877776543333222 33333334444555322 23456667778889
Q ss_pred HHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCC
Q 013217 302 RALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF 379 (447)
Q Consensus 302 ~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~ 379 (447)
+.+.+.|++ .++.+..+ ...+..++.+.. +.+..++.+.| +++||.+..+..++ .++.+|+++.. .
T Consensus 286 ~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~~g~~~~-----~~~~iRi~~~~--~--- 353 (375)
T 3op7_A 286 AILDQWIEEEPLVSYIRP-AVVSTSFVKIAV-DMPMEDFCLQLLQEHGVLLVPGNRFE-----RDGYVRLGFAC--E--- 353 (375)
T ss_dssp HHHHHHHHHCTTEEECCC-SSSSCEEEEECC-SSCHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEECCCS--C---
T ss_pred HHHHHHHhhCCCceEecC-CCeEEEeEEcCC-CCCHHHHHHHHHHhCCEEEeChhhhC-----CCCeEEEEecC--C---
Confidence 999999988 47776543 234445665543 34666666655 78999986543222 14689998642 2
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 013217 380 SEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 380 ~~~di~~l~~~i~~~l~~ 397 (447)
++++++.++.|.++++.
T Consensus 354 -~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 354 -QETLIKGLEKLSQFLRR 370 (375)
T ss_dssp -HHHHHHHHHHHHHHHGG
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 68899999999888764
No 132
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.92 E-value=5.7e-24 Score=208.34 Aligned_cols=333 Identities=17% Similarity=0.096 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHhh--cCeeEecC--CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC
Q 013217 8 VCEIITKEKERQF--KSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE 83 (447)
Q Consensus 8 ~~~~~~~e~~~~~--~~i~l~~~--~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~ 83 (447)
.+..|....+... .-+++... ...+++.|++++. .| ++. ..+++..++.+++++|+++
T Consensus 14 ~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~----------~~~---~~~~~~~~~~~a~~~g~~~ 75 (374)
T 2aeu_A 14 ARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TY----------IGS---SYFAEKVNEYGLKHLGGDE 75 (374)
T ss_dssp HHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----ST----------THH---HHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hh----------cCc---hHHHHHHHHHHHHHhCCCC
Confidence 4455555544332 34565543 4567999999985 11 111 2334445567788899842
Q ss_pred CccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHH
Q 013217 84 NKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK 163 (447)
Q Consensus 84 ~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~ 163 (447)
.+. .+.+++|++|+..++.++ |||+|++.++.|++|++.. ..+...|. +++.+ .|++++++
T Consensus 76 ~~~--~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~-----~~~~~~g~--~~~~v--------~d~~~l~~ 136 (374)
T 2aeu_A 76 NDK--CVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIE-----RSCKIVNA--KYFES--------DKVGEILN 136 (374)
T ss_dssp TEE--EEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHH-----HHHHHTTC--EEEEE--------SCHHHHHT
T ss_pred cce--EEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHH-----HHHHHcCc--EEEEe--------CCHHHHHh
Confidence 111 244577789999999988 9999999999888765311 01223443 44443 38899988
Q ss_pred HhhhhCCcE-EEEcCCCCCC---CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCCC
Q 013217 164 TAILFRPKL-IIAGASAYPR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR 238 (447)
Q Consensus 164 ~~~~~~~kl-ii~~~~~~~~---~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~ 238 (447)
+ ++ +|++ |++++++||+ ..++++|.++|+++|+++++|++|..+........++.. +.|++++|+||+++||+
T Consensus 137 ~-~~-~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~ 214 (374)
T 2aeu_A 137 K-ID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR 214 (374)
T ss_dssp T-CC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCS
T ss_pred c-CC-CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcc
Confidence 7 54 8999 8888777764 467899999999999999999998665310111111222 47999999999999999
Q ss_pred CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH----HHHHHH----
Q 013217 239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL----ASRLVE---- 310 (447)
Q Consensus 239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l----~~~L~~---- 310 (447)
+|++++++ ++.+.+....... .++++....++...+++... . +..+++.++++.+ .+.|.+
T Consensus 215 ~G~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~al~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~L~~ 283 (374)
T 2aeu_A 215 GGLLAGKK------ELVDKIYIEGTKF-GLEAQPPLLAGIYRALKNFN-L---ERIRKAFERAKNFDLSKIEKLNKELKA 283 (374)
T ss_dssp CEEEEEEH------HHHHHHHHHHHTT-TCBCCHHHHHHHHHHHHHCC-H---HHHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred eEEEEECH------HHHHHHHHhhccc-cCCCCHHHHHHHHHHHHHHh-H---HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999988 6777766533221 23455555556666776542 1 2344455555554 344433
Q ss_pred ----CCcEeeeCCCCCeeEEecCCCCCCC---HH-HHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217 311 ----LGYKLVSGGSDNHLVLVDLRPMGID---GA-RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK 382 (447)
Q Consensus 311 ----~g~~~~~~~~~~~~~~v~~~~~~~~---~~-~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~ 382 (447)
.|+.+...+...++.+.+... ..+ .. .+.+.|+++||.+..+ ...+...+.+||++..... .+.
T Consensus 284 ~~~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gV~v~~g----~~~~~~~~~lRi~~~~~~~---~~~ 355 (374)
T 2aeu_A 284 IDDNINIVYERTPTGFVIKRVYKDD-TINIKKLIEIGFNLLKNYGIITITV----AGMPGASKSLRIDLTSRDA---ERI 355 (374)
T ss_dssp TCTTEEEEEEECSSEEEEEEEESSH-HHHHHHHHHHHHHHHHHHCEECSTT----SSSCSSCCSEEEETTSGGG---GGS
T ss_pred hhhccCcceeeCCceEEEEeecccc-cccccchHHHHHHHHHhCCEEEecC----CCCCCCCCeEEEEcCCchH---HHH
Confidence 245543332222333333321 000 01 2345667899999643 2112234579999754222 244
Q ss_pred HHHHHHHHHHHHHHHH
Q 013217 383 EFVAIADFIHEGVEIT 398 (447)
Q Consensus 383 di~~l~~~i~~~l~~~ 398 (447)
++++++++|+++++..
T Consensus 356 ~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 356 DDNYIIKAIVESIKMA 371 (374)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899999998887753
No 133
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.92 E-value=2.3e-24 Score=212.57 Aligned_cols=309 Identities=17% Similarity=0.151 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccCC-CCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC
Q 013217 6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 84 (447)
Q Consensus 6 ~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~-~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~ 84 (447)
.++++.+.++.+++...++.+++.| ...|+++|......... .+..+.. | +....+.+| +.+++++|.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~n--~~~vl~a~~~~~~~~~~~~~~~~~~-y-~~~~~~~Le----~~lA~l~g~e~- 76 (409)
T 3jzl_A 6 QAIRKKVETQIDDLQNKTDEIAEFN--QAKVLDAFQENKVSDFHFHPSTGYG-Y-DDEGRDTLE----RVYATVFKTEA- 76 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTTCCGGGGCCCCTTC-T-TCHHHHHHH----HHHHHHHTCSE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHhhhhhhccCCCcCCC-C-ChhHHHHHH----HHHHHHhCCCc-
Confidence 4677777788888888888888888 47888888775432111 1111111 2 222355666 57899999876
Q ss_pred ccceeee--cCCcHHHHHHHHHHhcCCCCEEEEec-CCCCcccCCCc-cc-cccccccccceeEEEecccCCCCCCCCHH
Q 013217 85 KWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGF-MT-PKRRVSGTSIYFESMPYRLDESTGLVDYD 159 (447)
Q Consensus 85 ~~~~~v~--~~sGs~a~~~~~~al~~pgd~Vl~~~-~~~~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~id~~ 159 (447)
..+. ++||++|+..++.++++|||+|++.+ +.|++.....- .. ....+...|. +++.++++ +++.+|++
T Consensus 77 ---alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~--~~~~v~~~-~~g~~d~e 150 (409)
T 3jzl_A 77 ---ALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI--GYSSVPLL-ENGDVDFP 150 (409)
T ss_dssp ---EEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC--EEEECCCC-TTSCCCHH
T ss_pred ---EEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC--EEEEeCCC-CCCCcCHH
Confidence 3443 68999999999999999999999998 77766431000 00 0001223343 55666665 45789999
Q ss_pred HHHHHhhhhCCcEEEEcC----CCCCC--CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC-cccEEEeCC
Q 013217 160 MLEKTAILFRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT 230 (447)
Q Consensus 160 ~l~~~~~~~~~klii~~~----~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~ 230 (447)
++++++++ +|++|+++. +++++ ..|+++|.++|++ +|+++++|++|+.+... ..|.. ++|++++|+
T Consensus 151 ~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~----~~p~~~g~Div~~S~ 225 (409)
T 3jzl_A 151 RIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEY----QEPPEVGADIIAGSL 225 (409)
T ss_dssp HHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSS----CCSGGGTCSEEEEET
T ss_pred HHHHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccccccc----CCccccCCeEEEECc
Confidence 99999987 899999986 66665 5689999999999 99999999998655321 12333 589999999
Q ss_pred CcccCC---CCCceEEeecCCcchhhHHHHhhhcc-CCCC--CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217 231 HKSLRG---PRGGMIFFKKDPVLGVELESAINNAV-FPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304 (447)
Q Consensus 231 ~K~l~G---p~gG~i~~~~~~~~~~~~~~~i~~~~-~~~~--~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l 304 (447)
||+++| +.||++++++ ++.+++.... .++. ..++......++..+++ ....++++..+++..+
T Consensus 226 sK~lgg~~~~~GG~v~~~~------~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~-----~~~~r~~~~~~~a~~l 294 (409)
T 3jzl_A 226 IKNPGGGLAKTGGYIAGKE------ALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFF-----LAPHVTAQAIKGARFT 294 (409)
T ss_dssp TSGGGTTTCSSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred cccCCccCCceEEEEEeCH------HHHHHHHHHhccccccccccccHHHHHHHHHHHh-----hHHHHHHHHHHHHHHH
Confidence 999976 5689999987 7777776532 2322 12222211112222222 2356788899999999
Q ss_pred HHHHHHCCcEeeeCCCCCe-----eEEecCCCCCCCHHHHHHHHhhcCe
Q 013217 305 ASRLVELGYKLVSGGSDNH-----LVLVDLRPMGIDGARVEKILDMASI 348 (447)
Q Consensus 305 ~~~L~~~g~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~L~~~gI 348 (447)
++.|++.|+++.++ .++ +..+.+.. ......+.+.|+....
T Consensus 295 a~~L~~~g~~v~p~--~~~~~~~~i~~i~l~~-~~~~~~~~~~L~~~~~ 340 (409)
T 3jzl_A 295 AAMLAEFGVEADPV--WDAPRTDLIQSVSFHN-KEKMVAFAQAIQAASP 340 (409)
T ss_dssp HHHHHHTTCEEESC--TTSCCSSSCCEEECSC-HHHHHHHHHHHHHTSS
T ss_pred HHHHHhCCCcccCC--CCCCCccEEEEEEeCC-HHHHHHHHHHHHhcCc
Confidence 99999999988543 222 33444431 1122345666666543
No 134
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.92 E-value=1e-23 Score=209.65 Aligned_cols=331 Identities=12% Similarity=0.143 Sum_probs=210.0
Q ss_pred cCeeEecCC-------CCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecC
Q 013217 21 KSLELIASE-------NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL 93 (447)
Q Consensus 21 ~~i~l~~~~-------n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~ 93 (447)
+.|+|..++ ..+++.+.+++....... ..+|+.. .| ..++++...+++....+.+.. ..|.++
T Consensus 39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~---~g---~~~lr~~ia~~~~~~~~~~~~---~~i~~t 108 (418)
T 3rq1_A 39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAPI---AG---IPDFLCAAEKECFGNFRPEGH---IRSIAT 108 (418)
T ss_dssp GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCCT---TC---CHHHHHHHHHHHHGGGCCSSE---EEEEEE
T ss_pred CeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCCC---CC---hHHHHHHHHHHHhcccCcccc---ccEEEC
Confidence 568887663 246889999987654321 1133221 11 234544444556555554421 134446
Q ss_pred CcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---C
Q 013217 94 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---R 169 (447)
Q Consensus 94 sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~ 169 (447)
+|+ +|+..++.++++|||+|++.+|.|.++.. .+...|. +++.++++++++.+|++++++++++. +
T Consensus 109 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~ 178 (418)
T 3rq1_A 109 AGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV--------ICSDTGR--TLVTYSLFDEHNNFNHEAFQNRVNELAAKQ 178 (418)
T ss_dssp SHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECSBCTTSSBCHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHhcCCCCEEEECCCCchhHHH--------HHHHcCC--EEEEEeeeCCCCCcCHHHHHHHHHHhhccC
Confidence 655 89999999999999999999998876532 2334554 55666665455789999999998753 6
Q ss_pred Cc-EEEEcCC-CCCC--CCChH---HHHHHHH------HhCCEEEEehhhhccccccccCCCC----CCc--cc---EEE
Q 013217 170 PK-LIIAGAS-AYPR--DFDYP---RMRQIAD------AVGALLMMDMAHISGLVAASVVADP----FKY--CD---VVT 227 (447)
Q Consensus 170 ~k-lii~~~~-~~~~--~~~~~---~i~~ia~------~~g~~livD~a~~~g~~~~~~~~~~----~~~--~D---i~~ 227 (447)
++ +|+++++ +||+ ..+.+ +|+++|+ ++|+++|+|++| .++...+....+ .+. .| +++
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 257 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAY-LDYSGEKDEVRAFFNKFSHLPKEILTCVC 257 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTT-GGGSSCHHHHHGGGGGGTTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccc-ccccCChHHHHHHHHHHHhcCCCceEEEE
Confidence 76 7777767 7775 66655 5555566 889999999997 444433210000 011 12 778
Q ss_pred eCCCccc--CCCCCceEEe---ecCCcchhhHHHHhhhccCC---CCCCCCcHHHHHHHHHHHHHhc-----ChhHHHHH
Q 013217 228 TTTHKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLKHAQ-----SPEFKVYQ 294 (447)
Q Consensus 228 ~s~~K~l--~Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~---~~~g~p~~~~~aal~~al~~~~-----~~~~~~~~ 294 (447)
+|+||++ +|.|.|++++ ++ ++.+.+...... +..++++....+++..+++... ....+++.
T Consensus 258 ~S~sK~~~~~G~r~G~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 331 (418)
T 3rq1_A 258 YSLSKGFTMYGQRVGAMIGISDDE------EIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYY 331 (418)
T ss_dssp EESTTTTTCCSSCCEEEEEEESSH------HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred EeCCCCCcCcCCcceEEEEEeCCH------HHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999986 4777899988 55 666665542110 0112334444444443442210 01123455
Q ss_pred HHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217 295 NKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM 374 (447)
Q Consensus 295 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~ 374 (447)
+++.++++.+.+.|.+.|+++..+ ..+.+.|+++. +..++.+.|.++||.+.. + ++++|+++. .
T Consensus 332 ~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~----g------~~~iRis~~-~ 395 (418)
T 3rq1_A 332 QLIRDRADIFKQEAAQVGLPMLPY-RGGFFITIPTD----SANAICEELKKEHIYVIA----L------ANGIRIAAC-G 395 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCC-CSSSEEEEECT----THHHHHHHHHHTTEECEE----C------SSEEEEEGG-G
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCC-CceEEEEcCCC----CHHHHHHHHHhCCEEEec----C------CCCeEEEEe-c
Confidence 677888888899998888877654 34555666653 567888899999999853 2 357999954 2
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 375 TTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 375 ~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
.+ +++++++++.|+++++..
T Consensus 396 ~~----~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 396 IP----KCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp SC----HHHHTTHHHHHHHHHHHT
T ss_pred CC----HHHHHHHHHHHHHHHHHH
Confidence 24 899999999999988643
No 135
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.92 E-value=7.1e-23 Score=199.30 Aligned_cols=316 Identities=15% Similarity=0.113 Sum_probs=214.4
Q ss_pred hcCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-H
Q 013217 20 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S 96 (447)
Q Consensus 20 ~~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s 96 (447)
+..|+|..++|+ +++.+.+++...+.+. .+||.. ...+++ ++++++++++++. |.+++| +
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~-------~~~~l~----~~la~~~~~~~~~----i~~~~g~t 88 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKNL--GVYPDV-------NYRRLN----KSIENYLKLKDIG----IVLGNGAS 88 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHGG--GSCCCT-------TCHHHH----HHHHHHHTCCSCE----EEEESSHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHh--cCCCCc-------cHHHHH----HHHHHHhCCCcce----EEEcCCHH
Confidence 457888888775 4789999988877652 244332 123443 6788888987753 333555 5
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217 97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 176 (447)
Q Consensus 97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~ 176 (447)
+|+..++.++ |+|++..+.|.++.. .+...|. +++.++++ ..+.+|++++++++++ +++|+++
T Consensus 89 ~al~~~~~~~----d~vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~-~~~~~~~~~l~~~l~~--~~~v~i~ 151 (361)
T 3ftb_A 89 EIIELSISLF----EKILIIVPSYAEYEI--------NAKKHGV--SVVFSYLD-ENMCIDYEDIISKIDD--VDSVIIG 151 (361)
T ss_dssp HHHHHHHTTC----SEEEEEESCCTHHHH--------HHHHTTC--EEEEEECC-TTSCCCHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHHHHc----CcEEEecCChHHHHH--------HHHHcCC--eEEEeecC-cccCCCHHHHHHhccC--CCEEEEe
Confidence 8988888777 999999988876531 2334454 55555565 3456888999999976 8999998
Q ss_pred CCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-----cccEEEeCCCccc--CCCCCceEE-
Q 013217 177 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF- 243 (447)
Q Consensus 177 ~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-----~~Di~~~s~~K~l--~Gp~gG~i~- 243 (447)
.++||+ ..+ +++|.++|+++|+++++|++|..+ .... ...... ...++++|+||++ +|.|.|+++
T Consensus 152 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~ 229 (361)
T 3ftb_A 152 NPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEF-TGDP-SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGIT 229 (361)
T ss_dssp TTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGG-TCCT-TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhh-cCCc-ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEe
Confidence 788775 444 677888888999999999998533 2211 111111 2347889999987 456679988
Q ss_pred eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcE-eeeCCCC
Q 013217 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK-LVSGGSD 321 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~ 321 (447)
.++ ++.+.+.....+ .+++....+++..+++. ....++..+++.++++.+.+.|++. ++. +..+ .
T Consensus 230 ~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~ 296 (361)
T 3ftb_A 230 NNK------EIAAKIKAKQNP---WNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP--H 296 (361)
T ss_dssp SCH------HHHHHHHTTSCT---TCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC--S
T ss_pred CCH------HHHHHHHhhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC--C
Confidence 555 777777654332 24566555555555542 2345777888899999999999885 777 5543 2
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 322 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 322 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
..++++.+.. .+..++.+.|.++||.++.+...+ +..++.+|++++ + ++|++++.++|+++.+
T Consensus 297 ~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~~---~~~~~~iRis~~---~----~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 297 ANFVLCRLEN--ISGEKLYDSLLKEDIVIRRCCNFI---GLDDSFVRFAIK---D----EKKNTKFLRALKGVEN 359 (361)
T ss_dssp SSEEEEEESS--SCHHHHHHHHHTTTEECEECTTST---TCCTTEEEEECC---C----HHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCC--CCHHHHHHHHHHCCeEEeeCccCC---CCCCCEEEEEcC---C----HHHHHHHHHHHHHHHh
Confidence 3456677653 467888898988899996542221 223568999965 3 8899999999887654
No 136
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.92 E-value=1.5e-24 Score=211.13 Aligned_cols=332 Identities=11% Similarity=0.058 Sum_probs=207.7
Q ss_pred HHhhcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCC
Q 013217 17 ERQFKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS 94 (447)
Q Consensus 17 ~~~~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~s 94 (447)
.++...+.+..++|+. +|.|++++.+.+.. ..|+..+...+++ +++++++|.+.. +.+++
T Consensus 10 ~~~~~~~~~~~~~~~~g~~p~v~~ai~~~~~~---------~~~~~~~~~~~l~----~~la~~~~~~~~-----i~~~~ 71 (359)
T 3pj0_A 10 YQKTPYKLGGNGPRNVGVLTEALQNIDDNLES---------DIYGNGAVIEDFE----TKIAKILGKQSA-----VFFPS 71 (359)
T ss_dssp HHTCSEESSSSSCCBHHHHHHHTTTSCTTCBC---------CBTTBSHHHHHHH----HHHHHHHTCSEE-----EEESC
T ss_pred HHhcchhhcCCCccccCCCHHHHHHHHhhccc---------CcccCCHHHHHHH----HHHHHHhCCCcE-----EEeCC
Confidence 4556677888899987 78899988763322 1123334445555 688899998752 34488
Q ss_pred cHHHHHHHHHHhcCCCCE--EEEecCCCCcccCCCcccccccc-ccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 013217 95 GSPANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 171 (447)
Q Consensus 95 Gs~a~~~~~~al~~pgd~--Vl~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k 171 (447)
|++|+..++.+++++||+ |++..+.|....... .+ ...| .++++++. +++.+|+++++++ .+ +++
T Consensus 72 g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~------~~~~~~g--~~~~~v~~--~~~~~d~~~l~~~-~~-~~~ 139 (359)
T 3pj0_A 72 GTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD------GLKELQQ--ITPLLLGT--ANQLLTIDDIKSL-RE-PVS 139 (359)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT------HHHHHHC--CEEEECSC--TTSCCCHHHHHTC-SS-CCS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc------hHHHhcC--ceEEecCC--cCCCcCHHHHHhc-cC-Cce
Confidence 999999999999999987 444433332221100 11 2234 35556554 4578999999988 44 899
Q ss_pred EEEEcCCCCC--C-CCChH---HHHHHHHHhCCEEEEehhhhccccc-cccCCCCC-CcccEEEeCCCcccCCCCCceEE
Q 013217 172 LIIAGASAYP--R-DFDYP---RMRQIADAVGALLMMDMAHISGLVA-ASVVADPF-KYCDVVTTTTHKSLRGPRGGMIF 243 (447)
Q Consensus 172 lii~~~~~~~--~-~~~~~---~i~~ia~~~g~~livD~a~~~g~~~-~~~~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~ 243 (447)
+|++++++|+ + ..+.+ +|.++|++||+++++|++|..+... .+....++ .++|+++.|+||++++|.||+++
T Consensus 140 ~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~ 219 (359)
T 3pj0_A 140 SVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILA 219 (359)
T ss_dssp EEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEE
T ss_pred EEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEE
Confidence 9999866544 2 55655 5599999999999999987544321 11111111 24789999999999888777777
Q ss_pred eecCCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCC
Q 013217 244 FKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 320 (447)
.++ ++.+.+... .+.+...+.+....+++ .+++... +..++..++++++.+.|++. |+++...+.
T Consensus 220 ~~~------~l~~~~~~~~~~~~~~~~~~~~~~~a~~-~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 287 (359)
T 3pj0_A 220 GND------DFVQEAKIWKRRYGGDLISLYPYILSAD-YYFEKRI-----GKMAEYFEAAKGLAERFNSCSGVKTVPEVP 287 (359)
T ss_dssp ECH------HHHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHHHG-----GGHHHHHHHHHHHHHHHHTSTTEEEESSSC
T ss_pred CCH------HHHHHHHHHHHHhCCCcchhHHHHHHHH-HHHHHHH-----HHhHHHHHHHHHHHHHHhhCCCceeeccCC
Confidence 777 677766542 12211112222222222 3444322 34556788889999999985 888753223
Q ss_pred CCeeEEecCCCCC-CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 321 DNHLVLVDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 321 ~~~~~~v~~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
..+++|+++...+ .+..++.+.|.++||.++.+..++. ...+.+|++...... ..+.+++++..+.|.++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~---~~~~~~r~~i~~~~~-~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 288 VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS---ADVCAFEVSVGDAFA-EIPAKNLELVFRCLEKE 358 (359)
T ss_dssp SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE---TTEEEEEEECCTTGG-GSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC---CCceEEEEEecCccc-cCCHHHHHHHHHHHHhc
Confidence 4566777765321 2356788899999999975432221 113468886542211 13477777777777654
No 137
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.92 E-value=2.3e-23 Score=212.62 Aligned_cols=308 Identities=13% Similarity=0.033 Sum_probs=198.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc-------C-CCC------EEEEecCCCCcccCCC
Q 013217 62 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-------K-PHD------RIMGLDLPHGGHLSHG 127 (447)
Q Consensus 62 ~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~-------~-pgd------~Vl~~~~~~~~~~~~~ 127 (447)
+...++|..+++++++++|++.+. .+.+++||+||..++.++. + +|| +|++....|.+...
T Consensus 144 ~~~~~le~~~~~~la~l~g~~~~~---~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~-- 218 (515)
T 2jis_A 144 PVFVLMEEEVLRKLRALVGWSSGD---GIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQK-- 218 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCE---EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH--
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCC---eEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHH--
Confidence 456678888899999999998532 2334566789988887763 2 676 78888877766531
Q ss_pred cccccccccccccee-EEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEcCCCCC-C-CCChHHHHHHHHHhCCE
Q 013217 128 FMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYP-R-DFDYPRMRQIADAVGAL 199 (447)
Q Consensus 128 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~~~~~-----~~klii~~~~~~~-~-~~~~~~i~~ia~~~g~~ 199 (447)
.+...|.+. +++.++++ +++.+|+++|++++++. +|++|+++.++++ + ..|+++|+++|+++|++
T Consensus 219 ------~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~ 291 (515)
T 2jis_A 219 ------GAAFLGLGTDSVRVVKAD-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLW 291 (515)
T ss_dssp ------HHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCE
T ss_pred ------HHHHcCCCCCcEEEEecC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe
Confidence 223344322 34455565 46889999999999763 4888888865444 3 78999999999999999
Q ss_pred EEEehhhhccccccccCCCC---CCcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCC---------
Q 013217 200 LMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGL--------- 266 (447)
Q Consensus 200 livD~a~~~g~~~~~~~~~~---~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~--------- 266 (447)
+++|++|+.+....+.+... +.++|++++|+|||+++|.| |+++++++. ++.+.......+..
T Consensus 292 l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~----~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 292 LHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTS----NLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp EEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCS----CHHHHHHCC---------CCSCG
T ss_pred EEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChH----HHHHHHhcCCchhccCCcccccc
Confidence 99999987776644322111 22589999999999988887 999998730 13332111000000
Q ss_pred ---------CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCC--
Q 013217 267 ---------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGI-- 334 (447)
Q Consensus 267 ---------~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~-- 334 (447)
+.+... ...+++++++.+...++++..++..++++++.+.|.+ .|++++.+...+. +.+...+.++
T Consensus 368 ~~~~~~~~~~~~rr~-~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~-v~f~~~p~~~~~ 445 (515)
T 2jis_A 368 ALDTGDKVVQCGRRV-DCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN-VCFWFVPPSLRG 445 (515)
T ss_dssp GGCCGGGCSCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSE-EEEEECCGGGTT
T ss_pred cCCCCCCCCCCCCcc-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeE-EEEEEeCccccc
Confidence 111000 0123333444444467888899999999999999988 4898876432222 2232211110
Q ss_pred -----C-H-------HHHHHHHhhcCeEE-ccCCCCCCCCCCCCCeEEEec-CccccCCCCHHHHHHHHHHHHHHHH
Q 013217 335 -----D-G-------ARVEKILDMASITL-NKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 335 -----~-~-------~~~~~~L~~~gI~v-~~~~~p~~~~~~~~~~iRig~-~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+ . ..+.+.|.+.|+.+ .....++ ....+|+++ +..++ ++|++++++.|++++.
T Consensus 446 ~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~t----~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 446 KQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGT-----RGNFFRVVVANSALT----CADMDFLLNELERLGQ 513 (515)
T ss_dssp CTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEEECCCTTCC----HHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECC-----ceEEEEEEeCCCCCC----HHHHHHHHHHHHHHHh
Confidence 1 0 12556676778654 2110011 124799998 77787 9999999999987653
No 138
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.92 E-value=3.2e-23 Score=201.74 Aligned_cols=309 Identities=16% Similarity=0.112 Sum_probs=203.2
Q ss_pred cCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217 21 KSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 97 (447)
Q Consensus 21 ~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~ 97 (447)
..|.|..++|+. |+.+ ++ .. ..+||.. . ..+++ +.+++++|+++++ |.+++|+ +
T Consensus 30 ~~i~l~~~~~~~~~~~~v--a~----~~--~~~Y~~~------~-~~~lr----~~la~~~~~~~~~----v~~~~G~~~ 86 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL--TQ----QT--LNRYPEC------Q-PKAVI----ENYAQYAGVKPEQ----VLVSRGADE 86 (356)
T ss_dssp CSEECSSCCCSSCCCCCC--CC----CC--TTSCCCS------S-CHHHH----HHHHHHHTSCGGG----EEEESHHHH
T ss_pred ceEEeeCCCCCCCCCHhH--hh----hh--hccCCCc------c-HHHHH----HHHHHHhCCChHH----EEEcCCHHH
Confidence 457888888864 4444 21 11 1233332 1 13343 5788888988653 3447775 8
Q ss_pred HHHHHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217 98 ANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 176 (447)
Q Consensus 98 a~~~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~ 176 (447)
++..++.++++|| |+|++..|.|.++.. .+...|. +++.++++ +++.+|+++++++++ ++++|+++
T Consensus 87 ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~--~~~~v~l~ 153 (356)
T 1fg7_A 87 GIELLIRAFCEPGKDAILYCPPTYGMYSV--------SAETIGV--ECRTVPTL-DNWQLDLQGISDKLD--GVKVVYVC 153 (356)
T ss_dssp HHHHHHHHHCCTTTCEEEECSSSCTHHHH--------HHHHHTC--EEEECCCC-TTSCCCHHHHHTSCT--TEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEeeCC-CCCCCCHHHHHHHhc--CCCEEEEe
Confidence 9999999999999 999999988876531 2233454 55566665 456799999998886 78999998
Q ss_pred CCCCCC--CCChHHHH---HHHHHhCCEEEEehhhhccccccccCCC-CCCcccEEEeCCCccc--CCCCCceEEeecCC
Q 013217 177 ASAYPR--DFDYPRMR---QIADAVGALLMMDMAHISGLVAASVVAD-PFKYCDVVTTTTHKSL--RGPRGGMIFFKKDP 248 (447)
Q Consensus 177 ~~~~~~--~~~~~~i~---~ia~~~g~~livD~a~~~g~~~~~~~~~-~~~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~ 248 (447)
.++||+ ..+.+++. ++|+ +|+++++|++|............ .....++++.|+||++ +|.|.|++++++
T Consensus 154 ~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-- 230 (356)
T 1fg7_A 154 SPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE-- 230 (356)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH--
T ss_pred CCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCH--
Confidence 888875 66665555 5555 89999999998533211111110 0013578899999987 477789999977
Q ss_pred cchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cEeeeCCCCCeeEE
Q 013217 249 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGSDNHLVL 326 (447)
Q Consensus 249 ~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~ 326 (447)
++.+.+.....+. +++....++...+++......+++..+++.++++++.+.|.+.| +.+. + ....+++
T Consensus 231 ----~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~-~~~~~~~ 301 (356)
T 1fg7_A 231 ----EVINLLMKVIAPY---PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVF-D-SETNYIL 301 (356)
T ss_dssp ----HHHHHHHHHSCSS---CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-C-CSSSEEE
T ss_pred ----HHHHHHHHhcCCC---CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEC-C-CCCeEEE
Confidence 7777776643332 34444444434444321101156677888899999999998865 3333 2 2345567
Q ss_pred ecCCCCCCCHHHHHHHHhhcCeEEcc-CCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 327 VDLRPMGIDGARVEKILDMASITLNK-NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 327 v~~~~~~~~~~~~~~~L~~~gI~v~~-~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
+++. +..++.+.|.++||.++. +..++ ..+.+|++++ + ++|+++++++|++
T Consensus 302 ~~~~----~~~~l~~~L~~~gI~v~~~g~~~~-----~~~~iRis~~---~----~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 302 ARFK----ASSAVFKSLWDQGIILRDQNKQPS-----LSGCLRITVG---T----REESQRVIDALRA 353 (356)
T ss_dssp EEET----THHHHHHHHHHTTEECEECTTSTT-----CTTEEEEECC---C----HHHHHHHHHHHHT
T ss_pred EECC----CHHHHHHHHHHCCEEEEECCCCCC-----CCCeEEEEeC---C----HHHHHHHHHHHHh
Confidence 7764 567888888999999975 32222 1358999975 3 7899999988864
No 139
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.92 E-value=5.7e-23 Score=200.43 Aligned_cols=319 Identities=13% Similarity=0.058 Sum_probs=207.8
Q ss_pred cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCc-HH
Q 013217 21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SP 97 (447)
Q Consensus 21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sG-s~ 97 (447)
..|+|..+++. .++.+.+++...+.. ..+|+.. ...+++ +.+++++|++++. |.+++| ++
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~-------~~~~l~----~~la~~~~~~~~~----v~~~~g~~~ 87 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDC--IERYPDA-------DYFHLH----QALARHHQVPASW----ILAGNGETE 87 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCCT-------TCHHHH----HHHHHHHTSCGGG----EEEESSHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHH--hhcCCCC-------CHHHHH----HHHHHHHCcCHHH----EEECCCHHH
Confidence 46888877774 579999999887653 1233321 123444 5778888987653 333555 58
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcEEEEc
Q 013217 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG 176 (447)
Q Consensus 98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~klii~~ 176 (447)
++..++.++ +||+|++..|.|.++.. .+...|. +++.++++++ +..+ ++++.+.+.+ ++++|+++
T Consensus 88 al~~~~~~~--~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~-l~~~~~~~~~-~~~~v~i~ 153 (364)
T 1lc5_A 88 SIFTVASGL--KPRRAMIVTPGFAEYGR--------ALAQSGC--EIRRWSLREADGWQL-TDAILEALTP-DLDCLFLC 153 (364)
T ss_dssp HHHHHHHHH--CCSEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGGGTTCC-CTTHHHHCCT-TCCEEEEE
T ss_pred HHHHHHHHc--CCCeEEEeCCCcHHHHH--------HHHHcCC--eEEEEeCCcccccch-hHHHHHhccC-CCCEEEEe
Confidence 998888888 78999999988876531 2233454 4455555431 2222 4555555554 78998888
Q ss_pred CCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc--CCC-CCCcccEEEeCCCcccC--CCCCceEE-ee
Q 013217 177 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VAD-PFKYCDVVTTTTHKSLR--GPRGGMIF-FK 245 (447)
Q Consensus 177 ~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~--~~~-~~~~~Di~~~s~~K~l~--Gp~gG~i~-~~ 245 (447)
.++||+ ..+ +++|.++|+++|+++++|++|..+ ...+. ... .....+++++|+||+++ |.|.|+++ .+
T Consensus 154 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 232 (364)
T 1lc5_A 154 TPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDF-IPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD 232 (364)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-STTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhh-ccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECC
Confidence 777775 566 899999999999999999998543 22111 110 11136789999999984 66779999 77
Q ss_pred cCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCee
Q 013217 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL 324 (447)
Q Consensus 246 ~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 324 (447)
+ ++.+.+.....+ .+++....++...+++. ....++..+++.++++.+.+.|++. |+++..+ ...+
T Consensus 233 ~------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~g~~ 299 (364)
T 1lc5_A 233 D------AAMARMRRQQMP---WSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYPG--RANY 299 (364)
T ss_dssp H------HHHHHHHHHSCT---TCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC--SSSE
T ss_pred H------HHHHHHHHhCCC---CCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC--CCeE
Confidence 6 777777654332 23455444444444432 1235677778888899999999885 8876542 3445
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+++.+.. +..++.+.|.++||.+..+...+ ...++.+|+++. + ++|++++.++|+++++.
T Consensus 300 ~~~~~~~---~~~~l~~~l~~~gi~v~~g~~~~---~~~~~~iRis~~---~----~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 300 LLLRCER---EDIDLQRRLLTQRILIRSCANYP---GLDSRYYRVAIR---S----AAQNERLLAALRNVLTG 359 (364)
T ss_dssp EEEEESC---TTCCHHHHHHTTTEECEECTTST---TCCTTEEEEECC---C----HHHHHHHHHHHHHHC--
T ss_pred EEEECCC---cHHHHHHHHHHCCcEEeeCcccC---CCCCCEEEEEeC---C----HHHHHHHHHHHHHHhhc
Confidence 6666643 23467777888899996542111 123468999953 3 88999999999887654
No 140
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.92 E-value=9.6e-25 Score=218.68 Aligned_cols=281 Identities=14% Similarity=0.142 Sum_probs=188.5
Q ss_pred HHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc
Q 013217 71 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 149 (447)
Q Consensus 71 ~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 149 (447)
+++++++ +|++. .+..++|+ +|+.+++.++++|||+|++..+.|.++.. .+...|. +++.++.
T Consensus 62 ~~~~la~-~g~~~-----~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~--------~~~~~G~--~~~~v~~ 125 (446)
T 2x3l_A 62 SMKQVEK-HSDYD-----GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLH--------ALDISQQ--EGHFIET 125 (446)
T ss_dssp HHHHHCS-CTTEE-----EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHH--------HHHHHTC--CEEECEE
T ss_pred HHHHHHh-cCCCc-----eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHH--------HHHHcCC--eEEEEeC
Confidence 4478889 99872 23346765 99999999999999999999988876542 2334554 3344444
Q ss_pred --CCCC---CCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-C-
Q 013217 150 --DEST---GLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K- 221 (447)
Q Consensus 150 --~~~~---~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-~- 221 (447)
+++. +.+|++++ +.+ ++++|+++.+++.+ ..|+++|.++|+++|+++++|++|+..+.+.+. +... .
T Consensus 126 ~~~~~~~~~~~~d~~~l---~~~-~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~ 200 (446)
T 2x3l_A 126 HQSPLTNHYNKVNLSRL---NND-GHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY 200 (446)
T ss_dssp EECTTTSSEEEEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG
T ss_pred eeccccCcCCCCCHHHH---cCC-CceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc
Confidence 4221 46888887 344 78999888766655 789999999999999999999998653322222 1111 1
Q ss_pred cccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217 222 YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300 (447)
Q Consensus 222 ~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~ 300 (447)
++|++++|+||++.|+.| |+++++++.. + ...+.........++++...++++.++++.+...+.+++.++..++
T Consensus 201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i---~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l 276 (446)
T 2x3l_A 201 QADYVVQSFHKTLPALTMGSVLYIHKNAP---Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQL 276 (446)
T ss_dssp TCSEEEECHHHHSSSCTTCEEEEEETTCT---T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCEEEECCccccccccccEEEEEcCCcC---C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 479999999999888766 9999987421 1 1222221111124677888888887777766543333355566666
Q ss_pred HHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCC
Q 013217 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS 380 (447)
Q Consensus 301 ~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~ 380 (447)
++.+++. |++++... +...+++++. +.++.++.+.|.++||.+.. ++ .+.+|++++..++
T Consensus 277 ~~~l~~~----g~~~~~~~-~~~~l~i~~~--~~~~~~l~~~L~~~GI~v~~---~g------~~~iRi~~~~~~t---- 336 (446)
T 2x3l_A 277 IECLENK----GFEMLQVD-DPLKLLIKYE--GFTGHDIQNWFMNAHIYLEL---AD------DYQALAILPLWHH---- 336 (446)
T ss_dssp HHHHHHH----TCEEEECS-STTEEEEECT--TSCHHHHHHHHHHTTEEESE---EC------SSCEEEECCCCCT----
T ss_pred HHHHHHc----CCEECcCC-CCeEEEEEeC--CcCHHHHHHHHHHCCCEEEe---cC------CCEEEEEeecCCC----
Confidence 6655555 88887642 2334667764 56788899999888999852 11 2479999887666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013217 381 EKEFVAIADFIHEGVEI 397 (447)
Q Consensus 381 ~~di~~l~~~i~~~l~~ 397 (447)
++|+ ++.++|+++++.
T Consensus 337 ~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 337 DDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp TCCC-CHHHHHHHHHTC
T ss_pred HHHH-HHHHHHHHHHHh
Confidence 8889 999999888754
No 141
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.92 E-value=2.3e-23 Score=208.42 Aligned_cols=321 Identities=18% Similarity=0.194 Sum_probs=209.0
Q ss_pred CCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh-
Q 013217 28 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 106 (447)
Q Consensus 28 ~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al- 106 (447)
+.+.+++.+++++...+...+ |+.+ ....+++ +.+++++|.+. .+.++||++|+..++.++
T Consensus 37 ~~~~~~~~~~~a~~~~~~~~~--------~~~~-~~~~~l~----~~la~~~g~~~-----~i~~~sGt~a~~~al~~l~ 98 (437)
T 3bb8_A 37 SGKVIGTKELQLMVEASLDGW--------LTTG-RFNDAFE----KKLGEYLGVPY-----VLTTTSGSSANLLALTALT 98 (437)
T ss_dssp CCCCCCHHHHHHHHHHHHHCC--------CBSC-HHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHcCC--------cCCC-hHHHHHH----HHHHHHHCCCc-----EEEeCCHHHHHHHHHHHhh
Confidence 556678899999888775421 1222 2344444 67889999873 355689999999999998
Q ss_pred --------cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC-
Q 013217 107 --------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA- 177 (447)
Q Consensus 107 --------~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~- 177 (447)
+++||+|+++.+.|.++.. .+...|. +++.++++++++.+|++++++++++ +|++|+++.
T Consensus 99 ~~~~~~~~~~~gd~Vi~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~ 167 (437)
T 3bb8_A 99 SPKLGVRALKPGDEVITVAAGFPTTVN--------PTIQNGL--IPVFVDVDIPTYNVNASLIEAAVSD-KTKAIMIAHT 167 (437)
T ss_dssp CGGGGGGSCCTTCEEEECSSSCHHHHH--------HHHHTTC--EEEECCEETTTTEECGGGHHHHCCT-TEEEEEEECG
T ss_pred hcccccccCCCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEeccCccCCcCHHHHHHhcCC-CCeEEEEeCC
Confidence 8999999999998877642 2233454 5666667655688999999999977 899988863
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCC--CcccCCCCCceEEeecCCcchhhHH
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELE 255 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~--~K~l~Gp~gG~i~~~~~~~~~~~~~ 255 (447)
+++ ..|+++|.++|+++|+++++|++|+.|....+ .... ...|++++|+ .|.++|++||+++++++ .+.
T Consensus 168 ~g~--~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~~-~~~d~~~~s~~~~k~l~~g~gg~~~~~~~-----~~~ 238 (437)
T 3bb8_A 168 LGN--LFDLAEVRRVADKYNLWLIEDCCDALGSTYDG-KMAG-TFGDIGTVSFYPAKHITMGEGGAVFTQSA-----ELK 238 (437)
T ss_dssp GGC--CCCHHHHHHHHHHHTCEEEEECTTCTTCEETT-EETT-SSSSEEEEECSTTSSSCCSSCEEEEESCH-----HHH
T ss_pred CCC--hhcHHHHHHHHHHcCCEEEEECccccCceECC-eecc-cccCEEEEECcCCcCCCCCCeEEEEeCCH-----HHH
Confidence 333 47999999999999999999999987876522 1110 1368877665 34478888999998863 333
Q ss_pred HHhhh---ccC-----------------------------------CCCC-CCCcHHHHHHHHHHHHHhcChhHHHHHHH
Q 013217 256 SAINN---AVF-----------------------------------PGLQ-GGPHNHTIGGLAVCLKHAQSPEFKVYQNK 296 (447)
Q Consensus 256 ~~i~~---~~~-----------------------------------~~~~-g~p~~~~~aal~~al~~~~~~~~~~~~~~ 296 (447)
+.+.. ... .+.. +.......++++ +++ .+.++.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l~-----~~~~~~~~ 312 (437)
T 3bb8_A 239 SIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLA-QLE-----RIEEFVEK 312 (437)
T ss_dssp HHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHH-HHH-----HHHHHHHH
T ss_pred HHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHH-HHH-----HHHHHHHH
Confidence 32211 000 0000 001111211221 222 23456677
Q ss_pred HHHHHHHHHHHHHHC-CcEeeeCCC----CC-eeEEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCC-CCCC-C-----
Q 013217 297 VVSNCRALASRLVEL-GYKLVSGGS----DN-HLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPG-DKSA-L----- 362 (447)
Q Consensus 297 ~~~~~~~l~~~L~~~-g~~~~~~~~----~~-~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~-~~~~-~----- 362 (447)
..++++++.+.|.+. |+.++.... .+ +.+.+.+... +.+..++.+.|.++||.++..+.|. ...| +
T Consensus 313 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~ 392 (437)
T 3bb8_A 313 RKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKY 392 (437)
T ss_dssp HHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCC
T ss_pred HHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccCc
Confidence 788889999999885 766553211 02 1122323221 4577889999999999998653321 1001 0
Q ss_pred ------------CCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 363 ------------VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 363 ------------~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
..+.||++++..+| ++|++++++.|++++.
T Consensus 393 ~~~~~~~~~~~~~~~~lrl~~~~~~t----~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 393 RVVGELTNTDRIMNQTFWIGIYPGLT----HDHLDYVVSKFEEFFG 434 (437)
T ss_dssp EECSCCHHHHHHHHHEEEECCSTTCC----HHHHHHHHHHHHHHTT
T ss_pred cccCCCcHHHHHhcCEEEecCCCCCC----HHHHHHHHHHHHHHHc
Confidence 01249999887777 9999999999987654
No 142
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.92 E-value=4.2e-23 Score=209.84 Aligned_cols=329 Identities=12% Similarity=0.048 Sum_probs=210.1
Q ss_pred CCHHHHHHHhhhhhcc---CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCccceeeecCCc-HHHHHHHHHH
Q 013217 32 TSRAVMEAVGSCLTNK---YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG-SPANFEVYTA 105 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~---~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sG-s~a~~~~~~a 105 (447)
.|+.++++....+.+. ...+|+ .......+++.+.+++.+.+|.+ ++. |..++| ++++..++.+
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~------~~~G~~~lr~~ia~~~~~~~g~~~~~~~----i~~t~G~~~al~~~~~~ 176 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYS------HSQGIHGLRDAIASGIASRDGFPANADD----IFLTDGASPGVHLMMQL 176 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCC------CTTCCHHHHHHHHHHHHHHHSSCCCGGG----EEEESSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcC------CCcChHHHHHHHHHHHHhhcCCCCCccc----EEEcCCHHHHHHHHHHH
Confidence 5666777666655442 112232 22223456655566777777744 443 333555 5899999999
Q ss_pred hc-CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhh-----CCcEEEEcCC
Q 013217 106 IL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGAS 178 (447)
Q Consensus 106 l~-~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~-----~~klii~~~~ 178 (447)
++ +|||+|++..|.|.++.. .+...|. +++.++++++ ++.+|+++|++++++. ++++|++..+
T Consensus 177 l~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p 246 (500)
T 3tcm_A 177 LIRNEKDGILVPIPQYPLYSA--------SIALHGG--ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINP 246 (500)
T ss_dssp HCCSTTEEEEEEESCCTHHHH--------HHHHTTC--EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred HcCCCCCEEEEeCCCcHhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 98 899999999998876532 3344554 5566666643 5689999999999764 6888888877
Q ss_pred CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-----------Ccc-cEEEeCCCccc---CCCC
Q 013217 179 AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----------KYC-DVVTTTTHKSL---RGPR 238 (447)
Q Consensus 179 ~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-----------~~~-Di~~~s~~K~l---~Gp~ 238 (447)
+||+ ..+ +++|.++|+++|+++++|++|..+....+....++ +.. .+++.|+||++ +|.|
T Consensus 247 ~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R 326 (500)
T 3tcm_A 247 GNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKR 326 (500)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGC
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccc
Confidence 8875 444 56777779999999999999754322121111111 111 26678999998 4888
Q ss_pred CceEEe---ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH----------hcChhHHHHHHHHHHHHHHHH
Q 013217 239 GGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH----------AQSPEFKVYQNKVVSNCRALA 305 (447)
Q Consensus 239 gG~i~~---~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~----------~~~~~~~~~~~~~~~~~~~l~ 305 (447)
+|++++ ++ ++.+.+..... ...+++....++++.++.. +. ....++.+++.++++.+.
T Consensus 327 ~G~~~~~~~~~------~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~ 397 (500)
T 3tcm_A 327 GGYFEITGFSA------PVREQIYKIAS--VNLCSNITGQILASLVMNPPKASDESYASYK-AEKDGILASLARRAKALE 397 (500)
T ss_dssp CEEEEEESCCT------THHHHHHHHHH--TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCH------HHHHHHHHHHh--cccCCCHHHHHHHHHHhcCccccchhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 899988 44 56666554321 1234455555555545431 11 224566778888999999
Q ss_pred HHHHHC-CcEeeeCCCCCeeEEecCCCC----------CCCHHH--HHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecC
Q 013217 306 SRLVEL-GYKLVSGGSDNHLVLVDLRPM----------GIDGAR--VEKILDMASITLNKNSVPGDKSALVPGGIRIGSP 372 (447)
Q Consensus 306 ~~L~~~-g~~~~~~~~~~~~~~v~~~~~----------~~~~~~--~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~ 372 (447)
+.|++. |+++..+ ..+.+.|+++... +..... +.+.|+++||.+..+..++. +.....+|+++.
T Consensus 398 ~~L~~~~g~~~~~~-~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~--~~g~~~iRis~~ 474 (500)
T 3tcm_A 398 HAFNKLEGITCNEA-EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ--VPGTWHFRCTIL 474 (500)
T ss_dssp HHHHTSTTEECCCC-CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC--CTTCCBEEEESC
T ss_pred HHHhcCCCcEEecC-CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC--CCCCCEEEEEEC
Confidence 999885 8887653 3455556444311 122222 45778889999965533322 123457999987
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 373 AMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 373 ~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
++ +++++++++.|.++++..
T Consensus 475 --~~----~e~i~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 475 --PQ----EDKIPAVISRFTVFHEAF 494 (500)
T ss_dssp --SC----TTTHHHHHHHHHHHHHHH
T ss_pred --CC----HHHHHHHHHHHHHHHHHH
Confidence 44 789999999998887754
No 143
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.91 E-value=1e-23 Score=210.45 Aligned_cols=337 Identities=14% Similarity=0.089 Sum_probs=217.9
Q ss_pred hcCeeEecCCC-C--CCHHH--HHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc-CCCCCccceeeecC
Q 013217 20 FKSLELIASEN-F--TSRAV--MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPL 93 (447)
Q Consensus 20 ~~~i~l~~~~n-~--~~~~v--~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~-g~~~~~~~~~v~~~ 93 (447)
+..++|..+++ . .++.+ ++++...+......+|+.. ....++++...+++.+.. +++++.+ ..|.++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~------~g~~~lr~~ia~~~~~~~~~~~~~~~-~~i~~t 119 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPP------QGIEELRDLWQQKMLRDNPELSIDNM-SRPIVT 119 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCT------TCCHHHHHHHHHHHHHHCTTCCGGGB-CCCEEE
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCC------CCCHHHHHHHHHHHhccCcccCCCcc-ceEEEc
Confidence 45688877776 3 24555 7776655432111233321 112345433333333332 6665531 003335
Q ss_pred Cc-HHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccc-ccceeEEEecccCCCCCCCCHHHHHHHhhhh--C
Q 013217 94 SG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG-TSIYFESMPYRLDESTGLVDYDMLEKTAILF--R 169 (447)
Q Consensus 94 sG-s~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~--~ 169 (447)
+| ++|+..++.++++|||+|++.+|.|.++.. .+.. .|. +++.++++++++.+|++++++++++. +
T Consensus 120 ~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 189 (430)
T 2x5f_A 120 NALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL--------VFNTRNGA--NLQTYPIFDKDGHYTTDSLVEALQSYNKD 189 (430)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHTTTTCC--EEEEECCBCTTSCBCSHHHHHHHHHCCSS
T ss_pred CCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH--------HHHHhcCC--eEEEEeccCccCCcCHHHHHHHHHhcCCC
Confidence 66 589999999999999999999998877532 2233 444 55566665434679999999998763 6
Q ss_pred CcEEEEcCCCCCC--CCC---hHHHHHHHHH-----hCCEEEEehhhhcccccccc-CCC---CC---Ccc---cEEEeC
Q 013217 170 PKLIIAGASAYPR--DFD---YPRMRQIADA-----VGALLMMDMAHISGLVAASV-VAD---PF---KYC---DVVTTT 229 (447)
Q Consensus 170 ~klii~~~~~~~~--~~~---~~~i~~ia~~-----~g~~livD~a~~~g~~~~~~-~~~---~~---~~~---Di~~~s 229 (447)
+++|+++.++||+ ..+ +++|.++|++ +|+++|+|++|.. +...+. ... .+ ... +++++|
T Consensus 190 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 268 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYG-LFYEDVYTQSLFTALTNLHSNAILPIRLDG 268 (430)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTT-CBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred CEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccc-ccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence 7888888778875 566 7899999999 9999999999753 332221 111 11 124 678899
Q ss_pred CCccc--CCCCCceEEe---ecCCcchhhHHHHhhhccCC---CCCCCCcHHHHHHHHHHHH-Hhc-ChhHHHHHHHHHH
Q 013217 230 THKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLK-HAQ-SPEFKVYQNKVVS 299 (447)
Q Consensus 230 ~~K~l--~Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~---~~~g~p~~~~~aal~~al~-~~~-~~~~~~~~~~~~~ 299 (447)
+||++ +|.|.|++++ ++ ++.+.+...... ....+++....+++..+++ ... ....++..+++.+
T Consensus 269 ~sK~~~~~G~riG~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 342 (430)
T 2x5f_A 269 ATKEFFAWGFRVGFMTFGTSDQ------TTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKE 342 (430)
T ss_dssp HHHHTTCGGGCCEEEEEBCCCH------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCeEEEEEecCCH------HHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 99998 4566799999 66 666666543221 0123445555555555665 320 0112336778888
Q ss_pred HHHHHHHHHH----HCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217 300 NCRALASRLV----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAM 374 (447)
Q Consensus 300 ~~~~l~~~L~----~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~ 374 (447)
+++.+.+.|. +.|+++..+ ..+.++|+++. +.+..++.+.|.+ +||.+.. + ..+.+|++++.
T Consensus 343 ~~~~l~~~L~~~~~~~g~~~~~~-~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~----g-----~~~~iRis~~~- 409 (430)
T 2x5f_A 343 RYEVTKEVVYADQYHSHWQAYDF-NSGYFMAIKVH--DVDPEALRKHLIDKYSIGVIA----L-----NATDIRIAFSC- 409 (430)
T ss_dssp HHHHHHHHHTCGGGTTTEEECCC-CBSSEEEEEES--SSCHHHHHHHHHHHHCEECEE----C-----SSSEEEEEGGG-
T ss_pred HHHHHHHHHHhhCCCCCceeeCC-CceEEEEeCCC--CCCHHHHHHHHHHhCCEEEec----C-----CCCeEEEEEec-
Confidence 8899999998 567776543 33455777775 5577888888876 9999854 2 24589999874
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHH
Q 013217 375 TTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 375 ~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
++ +++++++++.|+++++.
T Consensus 410 ~~----~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 410 VE----KDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp SC----GGGHHHHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHHHHHh
Confidence 34 88999999999988764
No 144
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.91 E-value=1.8e-23 Score=212.01 Aligned_cols=330 Identities=12% Similarity=0.017 Sum_probs=210.1
Q ss_pred HHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCcc------ceeeecCCcHHHHHHHHHHhc
Q 013217 34 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKW------GVNVQPLSGSPANFEVYTAIL 107 (447)
Q Consensus 34 ~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~------~~~v~~~sGs~a~~~~~~al~ 107 (447)
..+.+++...++. +..+ |.......++|+.+++++++++|++.+.. ...+.+++||+||..++.++.
T Consensus 88 ~~~~~~~~~~~n~-~~~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 88 AMLADMLCGAIGC-IGFS------WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp HHHHHHHHHHHCC-CCSS------GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-Cccc------cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 3456666655432 1111 23345577899899999999999985310 012445667799988887653
Q ss_pred CC---------CC--------E--EEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh
Q 013217 108 KP---------HD--------R--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF 168 (447)
Q Consensus 108 ~p---------gd--------~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~ 168 (447)
.+ || + |+++.+.|.+.. +.+...|. +++.++++ +++.+|+++|++++++
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~--------~~~~~~G~--~v~~v~~d-~~~~~d~~~L~~~i~~- 228 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE--------RAGLIGGV--KLKAIPSD-GKFAMRASALQEALER- 228 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH--------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHHHH-
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH--------HHHHhCCC--ceEEeecC-CCCCCCHHHHHHHHHH-
Confidence 21 43 3 777877776542 23445565 45555565 5789999999999976
Q ss_pred CC------cEEEEcCCCCC-C-CCChHHHHHHHHHhCCEEEEehhhhccccccccCC---CCCCcccEEEeCCCcccCCC
Q 013217 169 RP------KLIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGP 237 (447)
Q Consensus 169 ~~------klii~~~~~~~-~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~---~~~~~~Di~~~s~~K~l~Gp 237 (447)
++ .+|+++.++++ + ..|+++|+++|+++|+++++|++|+.+....+... ..+.++|++++++|||+.+|
T Consensus 229 ~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p 308 (486)
T 1js3_A 229 DKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN 308 (486)
T ss_dssp HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC
T ss_pred HHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC
Confidence 44 37777655444 3 78999999999999999999999876654332111 12236899999999999877
Q ss_pred CC-ceEEeecCCcchhhH-HHHhhhc---cCC--------------CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 013217 238 RG-GMIFFKKDPVLGVEL-ESAINNA---VFP--------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV 298 (447)
Q Consensus 238 ~g-G~i~~~~~~~~~~~~-~~~i~~~---~~~--------------~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~ 298 (447)
.+ |+++++++ .. .+.+... ... ...++... ...+++++++.+...+++++.++..
T Consensus 309 ~~~G~l~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~~~~~~~~~ 382 (486)
T 1js3_A 309 FDCSAMWVKRR-----TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKHV 382 (486)
T ss_dssp SSCEEEEESCH-----HHHHGGGC------------CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCH-----HHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66 99999873 32 3333110 000 00111111 2345566666555567888899999
Q ss_pred HHHHHHHHHHHH-CCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec-Ccccc
Q 013217 299 SNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTT 376 (447)
Q Consensus 299 ~~~~~l~~~L~~-~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~~~ 376 (447)
++++++.+.|.+ .|++++.+. ...++.+.+.+......++.+.|.+.|+.+.. |+.. .....+|+++ ...++
T Consensus 383 ~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~---~~~~--~~~~~lRi~~~~~~~t 456 (486)
T 1js3_A 383 QLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSDGLNEALLERINSARKIHLV---PCRL--RGQFVLRFAICSRKVE 456 (486)
T ss_dssp HHHHHHHHHHHHCTTEEECSCC-CSSEEEEEESSCHHHHHHHHHHHHHHTSCBCE---EEEE--TTEEEEEEECCCTTCC
T ss_pred HHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEecChHHHHHHHHHHHHhcCCEEEE---EEEE--CCEEEEEEEeCCCCCC
Confidence 999999999998 489887542 23334444432110136677788777865321 1110 0134799995 44455
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 013217 377 RGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 377 ~g~~~~di~~l~~~i~~~l~~~ 398 (447)
++|++++++.|++++...
T Consensus 457 ----~~di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 457 ----SGHVRLAWEHIRGLAAEL 474 (486)
T ss_dssp ----HHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 999999999999887654
No 145
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.91 E-value=5.6e-23 Score=203.07 Aligned_cols=324 Identities=15% Similarity=0.164 Sum_probs=200.6
Q ss_pred CeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHH
Q 013217 22 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 101 (447)
Q Consensus 22 ~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~ 101 (447)
...+.++.+++.+.+.+++.. +.+. ..+|...|+ +.+...+++ +++++++|.+. .+.++||++|+..
T Consensus 29 ~~p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~r~--~~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~a~~~ 95 (398)
T 1gc0_A 29 VPPVYQTATFTFPTVEYGAAC-FAGE-QAGHFYSRI--SNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITS 95 (398)
T ss_dssp SCCBCCCSCBCCC-------------------------CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH
T ss_pred CCCccCCCccccCCHHHHHHh-hcCC-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHH
Confidence 345667888888888877652 2222 123333332 344455555 68889999862 3556999999999
Q ss_pred HHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217 102 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 181 (447)
Q Consensus 102 ~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~ 181 (447)
++.+++++||+|++..+.|+++..... ......|. +++.++. .|++++++++++ +|++|++++++|+
T Consensus 96 ~l~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~np 162 (398)
T 1gc0_A 96 TLWTLLRPGDEVLLGNTLYGCTFAFLH----HGIGEFGV--KLRHVDM------ADLQALEAAMTP-ATRVIYFESPANP 162 (398)
T ss_dssp HHHHHCCTTCEEEEESSCCSHHHHHHH----HTGGGGTC--EEEEECT------TCHHHHHHHCCT-TEEEEEEESSCTT
T ss_pred HHHHHhcCCCEEEEeCCCchhHHHHHH----HHHHHcCC--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCC
Confidence 999999999999999999887642110 00122343 4444332 389999999987 8999999877776
Q ss_pred C--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHH
Q 013217 182 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELE 255 (447)
Q Consensus 182 ~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~ 255 (447)
+ ..|+++|.++|+++|+++++|++|..+.... ++. ++|+++.|+||+++||. ||++++++ +..
T Consensus 163 tG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~------~~~ 231 (398)
T 1gc0_A 163 NMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR-----PLELGADLVVHSATKYLSGHGDITAGIVVGSQ------ALV 231 (398)
T ss_dssp TCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC-----GGGGTCSEEEEETTTTTTCSSSCCCEEEEECH------HHH
T ss_pred CcccccHHHHHHHHHHcCCEEEEECCCcccccCC-----chhhCceEEEECCccccCCCCCCeEEEEEECh------HHH
Confidence 4 7799999999999999999999997665422 222 48999999999998765 58998887 433
Q ss_pred H-HhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC-cE--------------eeeC-
Q 013217 256 S-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YK--------------LVSG- 318 (447)
Q Consensus 256 ~-~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~--------------~~~~- 318 (447)
+ .+.........++.+....++...+++ .+..+.++..++++.+.+.|.+.+ +. +...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~ 306 (398)
T 1gc0_A 232 DRIRLQGLKDMTGAVLSPHDAALLMRGIK-----TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQ 306 (398)
T ss_dssp HHHHHTHHHHHTCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC--------------
T ss_pred HHHHHHHhhccCCCCCCHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhh
Confidence 3 444322110123445443333333332 345667888899999999998732 22 1110
Q ss_pred -CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCC---------CCCC------------CCCCCCeEEEecCcccc
Q 013217 319 -GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV---------PGDK------------SALVPGGIRIGSPAMTT 376 (447)
Q Consensus 319 -~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~---------p~~~------------~~~~~~~iRig~~~~~~ 376 (447)
.....++.+.+.. +...+.+.|.+.+|.+..... |... ....++.||++++..++
T Consensus 307 ~~~~~~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~ 383 (398)
T 1gc0_A 307 MSQPGGMIAFELKG---GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDI 383 (398)
T ss_dssp --CCTTEEEEEETT---HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCH
T ss_pred CCCCceEEEEEECC---CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCH
Confidence 0123444445432 235677888888877643110 1100 01124689999998877
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 013217 377 RGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 377 ~g~~~~di~~l~~~i~~~ 394 (447)
+++++.+.++|+++
T Consensus 384 ----~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 384 ----DDLLADVQQALKAS 397 (398)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhc
Confidence 99999999888754
No 146
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.91 E-value=3.8e-23 Score=204.23 Aligned_cols=325 Identities=11% Similarity=0.017 Sum_probs=212.0
Q ss_pred cCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcHHHH
Q 013217 21 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPAN 99 (447)
Q Consensus 21 ~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs~a~ 99 (447)
..+++.+++..+|+.|++++...... ..++ .++ +..+ ..+.+.+++++++++|++. +++ .+.+++|++|+
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~--~~~--~~~~-~~~~~~~~~~la~~~g~~~~~~i--~~~t~g~t~al 110 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTAAA--LFGT--SHR--QAPV-KNLVGRVRSGLAELFSLPDGYEV--ILGNGGATAFW 110 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTTTT--TTTS--CTT--SHHH-HHHHHHHHHHHHHHTTCCTTCEE--EEEETCHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcCCC--ccCc--CcC--CHHH-HHHHHHHHHHHHHHhCCCCCceE--EEeCCchhHHH
Confidence 45788899889999999998763111 0010 011 1222 2333456789999999974 222 11145666999
Q ss_pred HHHHHHhcCCC-CEEEEecCCCCcccCCCccccccccccc--cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 013217 100 FEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 176 (447)
Q Consensus 100 ~~~~~al~~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~ 176 (447)
.+++.++++|| |.| ....|+.... ...... |.....++ ++ ++...+. + +++ +|++|+++
T Consensus 111 ~~~~~~l~~~gv~~v--~~~~~~~~~~-------~~~~~~~~g~~~~~v~--~~-~g~~~~~-~----i~~-~~~~v~~~ 172 (398)
T 2fyf_A 111 DAAAFGLIDKRSLHL--TYGEFSAKFA-------SAVSKNPFVGEPIIIT--SD-PGSAPEP-Q----TDP-SVDVIAWA 172 (398)
T ss_dssp HHHHHHTCSSCEEEE--ECSHHHHHHH-------HHHHHCTTSCCCEEEE--CC-TTCCCCC-C----CCT-TCSEEEEE
T ss_pred HHHHHHhcCCCeEEE--eCCHHHHHHH-------HHHHHhCCCCceEEEe--cC-CCCCCCc-c----ccC-CCCEEEEe
Confidence 99999999998 444 2222211000 001122 33333334 44 2233332 1 444 89999888
Q ss_pred CCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCCcccEEEeCCCcccCCCCC-ceEEeecCCcchhh
Q 013217 177 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVE 253 (447)
Q Consensus 177 ~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~ 253 (447)
.++|++ ..|+++|.++ +|+++++|++|+.|.... ++..+|++++|+||+++++.| |++++++ +
T Consensus 173 ~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~-----~~~~~di~~~s~sK~~~~~gg~g~l~~~~------~ 238 (398)
T 2fyf_A 173 HNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPV-----DIAETDAYYFAPQKNFASDGGLWLAIMSP------A 238 (398)
T ss_dssp SEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCC-----CGGGCSEEEECTTSTTCSCSSEEEEEECH------H
T ss_pred CcCCCcceecchHHhhhh---cCCeEEEEeccccCCccc-----CcccCcEEEEecCcccCCCCceEEEEECH------H
Confidence 766664 7788888777 899999999997765432 222479999999999876645 8888887 5
Q ss_pred HHHHhhhc----------c----------CCCCCCCCcHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHC-
Q 013217 254 LESAINNA----------V----------FPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVEL- 311 (447)
Q Consensus 254 ~~~~i~~~----------~----------~~~~~g~p~~~~~aal~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~- 311 (447)
+.+++... . .....++++...++++..+++.+...+ +++..+++.++++++.+.|++.
T Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~ 318 (398)
T 2fyf_A 239 ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERP 318 (398)
T ss_dssp HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 65554210 0 012346778877777778888765444 7888899999999999999986
Q ss_pred CcEeee--C-CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217 312 GYKLVS--G-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA 388 (447)
Q Consensus 312 g~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~ 388 (447)
|+++.. + ...++++++.+.. +++..++.+.|.+.||.++.+ . .....+.+|++++..++ ++|+++++
T Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~gI~v~~g----~-~~~~~~~iRis~~~~~t----~e~i~~~~ 388 (398)
T 2fyf_A 319 YTTPFVTDPGLRSQVVGTIDFVD-DVDAGTVAKILRANGIVDTEP----Y-RKLGRNQLRVAMFPAVE----PDDVSALT 388 (398)
T ss_dssp TEEESCCSGGGBCSSEEEEEECT-TSCHHHHHHHHHHTTCBCCSC----C-TTTCSSEEEEECCTTSC----HHHHHHHH
T ss_pred CceeccCChhhcCCcEEEEECCC-CCCHHHHHHHHHHCCcEEecC----c-ccCCCCEEEEEecCCCC----HHHHHHHH
Confidence 888764 2 1123366777643 567888999998889998643 1 11224689999987777 99999999
Q ss_pred HHHHHHHH
Q 013217 389 DFIHEGVE 396 (447)
Q Consensus 389 ~~i~~~l~ 396 (447)
+.|++++.
T Consensus 389 ~~l~~~l~ 396 (398)
T 2fyf_A 389 ECVDWVVE 396 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 147
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.91 E-value=5.3e-23 Score=204.14 Aligned_cols=314 Identities=11% Similarity=0.064 Sum_probs=195.5
Q ss_pred cCeeEecCC------C-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecC
Q 013217 21 KSLELIASE------N-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL 93 (447)
Q Consensus 21 ~~i~l~~~~------n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~ 93 (447)
+.|+|..++ . .+++.+.+++....... ..+|+.. .| ..++.+...+++....+.+.. ..|.++
T Consensus 38 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~Y~~~---~g---~~~lr~~la~~~~~~~~~~~~---~~i~~t 107 (413)
T 3t18_A 38 AVINAALGTLLDDKGKIIALPSVYDRLDEMDRSH-IASYAPI---EG---EKDYRKIVIDTLFGPYKPEGY---ISAIAT 107 (413)
T ss_dssp GCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHH-HHSCCCT---TC---CHHHHHHHHHHHHGGGCCSSE---EEEEEE
T ss_pred ceEeccccCccCCCCCcCChHHHHHHHHhcCccc-ccCcCCC---CC---CHHHHHHHHHHHhcccCcccc---CcEEEc
Confidence 567876654 2 36788998887643211 1233221 11 223443444556555544311 133345
Q ss_pred CcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhh---C
Q 013217 94 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---R 169 (447)
Q Consensus 94 sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~---~ 169 (447)
+|+ +|+..++.++++|||+|++.+|.|.++.. .+...|. +++.++++++++.+|+++|++++++. +
T Consensus 108 ~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 177 (413)
T 3t18_A 108 PGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRK--------ICEEFGR--NFKTFEFFTDDFAFNIDVYKEAIDEGIRDS 177 (413)
T ss_dssp SHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHH--------HHHHHTC--EEEEECCBCTTSSBCHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHhcCCCCEEEECCCCcccHHH--------HHHHhCC--eEEEeeccCCCCCcCHHHHHHHHHHHhhcC
Confidence 555 99999999999999999999998776531 2334554 55566664345789999999998763 6
Q ss_pred Cc-EEEEcCC-CCCC--CCChHHH---HHHHH------HhCCEEEEehhhhccccccccCCCCC-C---c--cc---EEE
Q 013217 170 PK-LIIAGAS-AYPR--DFDYPRM---RQIAD------AVGALLMMDMAHISGLVAASVVADPF-K---Y--CD---VVT 227 (447)
Q Consensus 170 ~k-lii~~~~-~~~~--~~~~~~i---~~ia~------~~g~~livD~a~~~g~~~~~~~~~~~-~---~--~D---i~~ 227 (447)
++ +++++++ +||+ ..+.+++ +++|+ ++|+++|+|++| .++...+....++ . . .+ +++
T Consensus 178 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (413)
T 3t18_A 178 DRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAY-LEFAGDGDQQRKFFEKFSNLPRNLFVVVA 256 (413)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTT-GGGSSSSSTTTGGGGGGTTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEeccc-ccccCChhhHHHHHHHHhhcCCCeeEEEE
Confidence 77 7777777 7775 6666554 55565 899999999996 4554443211111 1 1 12 778
Q ss_pred eCCCccc--CCCCCceEEe---ecCCcchhhHHHHhhhccCC---CCCCCCcHHHHHHHHHHHHHhc----ChhHHHHHH
Q 013217 228 TTTHKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLKHAQ----SPEFKVYQN 295 (447)
Q Consensus 228 ~s~~K~l--~Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~---~~~g~p~~~~~aal~~al~~~~----~~~~~~~~~ 295 (447)
+|+||++ +|.|.|++++ ++ ++.+.+...... +..++++....+++..+++... ....++..+
T Consensus 257 ~S~sK~~~~~G~riG~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 330 (413)
T 3t18_A 257 FSMSKSHTAYGLRSGAAVGISSSK------EIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRN 330 (413)
T ss_dssp EEHHHHTTCGGGCCEEEEEEESCH------HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred EecCccCCCcCcCcEEEEEecCCH------HHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 8999987 4677799988 55 666665542111 0112234444444433332210 012245567
Q ss_pred HHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217 296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 375 (447)
Q Consensus 296 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~ 375 (447)
++.++++.+.+.|.+.|+++..+ ..+.+.|+++. +..++.+.|.++||.+.. + ++++|+++...+
T Consensus 331 ~~~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~----~~~~~~~~l~~~gv~v~~----g------~~~iRis~~~~~ 395 (413)
T 3t18_A 331 MLKSRADVFVTAAKENKLTMIPY-FGGFFTFIPTD----KAFDIVKDLEKENIFTIP----S------AKGIRVAICGVG 395 (413)
T ss_dssp HHHHHHHHHHHHHHHTTCCCBCC-CSSSCEEEECS----CHHHHHHHHHHTTEECEE----C------SSEEEECTTTSC
T ss_pred HHHHHHHHHHHHHHHcCCCccCC-CceEEEEeCCC----CHHHHHHHHHhCCEEEec----C------CCceEEEEeeCC
Confidence 78888889999998888877654 33555677652 567888889999999954 2 358999987555
Q ss_pred c
Q 013217 376 T 376 (447)
Q Consensus 376 ~ 376 (447)
+
T Consensus 396 ~ 396 (413)
T 3t18_A 396 E 396 (413)
T ss_dssp G
T ss_pred H
Confidence 4
No 148
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.91 E-value=3.7e-23 Score=205.93 Aligned_cols=340 Identities=13% Similarity=0.080 Sum_probs=211.8
Q ss_pred hhcCeeEecCCCC-----CCHHHHHHHh--hhhhcc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceee
Q 013217 19 QFKSLELIASENF-----TSRAVMEAVG--SCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV 90 (447)
Q Consensus 19 ~~~~i~l~~~~n~-----~~~~v~~a~~--~~~~~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v 90 (447)
....|+|..+..- +++.+++++. ..+.+. ...+||+ ......+++ +.+++++++++++ |
T Consensus 24 ~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~-----~~~g~~~lr----~~ia~~~~~~~~~----i 90 (423)
T 3ez1_A 24 RGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPG-----GVAGLPSAR----ALFAGYLDVKAEN----V 90 (423)
T ss_dssp HTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCS-----CTTCCHHHH----HHHHHHTTSCGGG----E
T ss_pred CCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCC-----CCCChHHHH----HHHHHHhCCChhh----E
Confidence 4466888766654 4557888775 433311 0123421 112223444 5788888988764 3
Q ss_pred ecCCcH-HHHH--HHHHHhcC--C---------CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCC
Q 013217 91 QPLSGS-PANF--EVYTAILK--P---------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 156 (447)
Q Consensus 91 ~~~sGs-~a~~--~~~~al~~--p---------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 156 (447)
.+++|+ +++. .++.++++ | ||+|++.+|.|.++.. .+...|. ++++++++++ .+
T Consensus 91 ~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~--g~ 158 (423)
T 3ez1_A 91 LVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL--------LLQTLGF--ELLTVDMQSD--GP 158 (423)
T ss_dssp EECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH--------HHHHHTC--EEEEEEEETT--EE
T ss_pred EEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH--------HHHHcCC--EEEeccCCCC--CC
Confidence 346665 7886 78888887 8 5999999988866531 2334454 5556556533 49
Q ss_pred CHHHHHHHhh-hhCCcEEEEc-CCCCCC--CCChH---HHHHHH-HHhCCEEEEehhhhcccccc-ccCC--CC------
Q 013217 157 DYDMLEKTAI-LFRPKLIIAG-ASAYPR--DFDYP---RMRQIA-DAVGALLMMDMAHISGLVAA-SVVA--DP------ 219 (447)
Q Consensus 157 d~~~l~~~~~-~~~~klii~~-~~~~~~--~~~~~---~i~~ia-~~~g~~livD~a~~~g~~~~-~~~~--~~------ 219 (447)
|+++|+++++ ..++++|++. .++||+ ..+.+ +|.++| +++|+++|+|++|....... +..+ +.
T Consensus 159 d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 238 (423)
T 3ez1_A 159 DVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARD 238 (423)
T ss_dssp CHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHH
T ss_pred CHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhc
Confidence 9999999995 3378998765 567775 66665 888888 89999999999975322222 1111 00
Q ss_pred --CCcccEEEeCCCcc-cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcC---hhHHHH
Q 013217 220 --FKYCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS---PEFKVY 293 (447)
Q Consensus 220 --~~~~Di~~~s~~K~-l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~---~~~~~~ 293 (447)
....++++.|+||+ ++|.|.|+++.++ ++.+.+......... +++.....+...+++.+.. ..+++.
T Consensus 239 ~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 311 (423)
T 3ez1_A 239 AGYPDRAFVFASTSKITFAGAGLGFVASSE------DNIRWLSKYLGAQSI-GPNKVEQARHVKFLTEYPGGLEGLMRDH 311 (423)
T ss_dssp HTCTTSEEEEEESTTTSCSSSSCEEEEECH------HHHHHHHHHHHHSCS-CCCHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred cCCCCeEEEEeCchhhccCCcceEEEEeCH------HHHHHHHHHHhhhcc-CCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 11356889999996 4678889999987 677766543322222 2333333344445554111 123344
Q ss_pred HHHHHHHHHHHHHHHHH----CC--cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEcc-CCCCCCCCCCCCCe
Q 013217 294 QNKVVSNCRALASRLVE----LG--YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK-NSVPGDKSALVPGG 366 (447)
Q Consensus 294 ~~~~~~~~~~l~~~L~~----~g--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~-~~~p~~~~~~~~~~ 366 (447)
.+.+.++.+.+.+.|.+ .| +.+..+ ...+++|+++... +..++.+.|.++||.+.. +...+...+...++
T Consensus 312 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~ 388 (423)
T 3ez1_A 312 AAIIAPKFRAVDEVLRAELGEGGEYATWTLP-KGGYFISLDTAEP--VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRN 388 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTSSEEECCC-SBSSCEEEEESSS--CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCE
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCceEEeCC-CccEEEEEECCCC--cHHHHHHHHHHCCcEEecCcccccCCCCCCCCe
Confidence 45555566666666544 44 555433 3456678887542 577888999999999965 22111111123568
Q ss_pred EEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 367 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 367 iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+||++... + ++++++.++.|.++++..
T Consensus 389 iRis~~~~-~----~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 389 LRLAPTRP-P----VEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp EEECCSSS-C----HHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCC-C----HHHHHHHHHHHHHHHHHH
Confidence 99998644 5 899999999999988754
No 149
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.91 E-value=2.3e-23 Score=216.51 Aligned_cols=293 Identities=17% Similarity=0.144 Sum_probs=201.8
Q ss_pred HHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecc
Q 013217 70 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 148 (447)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 148 (447)
.++++++++||++.. +.+++|+ .||.+++.++++|||+|++..+.|.++.. .+..+|. +++.++
T Consensus 199 eaE~~lA~~fGa~~a-----~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~--------~l~lsGa--~pv~v~ 263 (715)
T 3n75_A 199 EAEQYIARVFNADRS-----YMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH--------LMMMSDV--TPIYFR 263 (715)
T ss_dssp HHHHHHHHHHTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHSCC--EEEEEC
T ss_pred HHHHHHHHHhCCCCc-----eEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEe
Confidence 456789999999863 3348886 99999999999999999999998877642 3445665 444433
Q ss_pred cCCCCCC----C-----CHHHHHHHhhhh-C---CcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccccccc
Q 013217 149 LDESTGL----V-----DYDMLEKTAILF-R---PKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAAS 214 (447)
Q Consensus 149 ~~~~~~~----i-----d~~~l~~~~~~~-~---~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~ 214 (447)
.+.+++. + |+++|+++++++ + |++|+++.+++.+ ..|+++|.++|++++ +++|+||+.|+.+.+
T Consensus 264 ~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~ 341 (715)
T 3n75_A 264 PTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSP 341 (715)
T ss_dssp CCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSG
T ss_pred ccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEccccccccccCC
Confidence 3322232 3 899999999863 2 3377887666666 789999999998653 799999988764333
Q ss_pred cCC--CCCC---cccEE---EeCCCcccCCCC-CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh
Q 013217 215 VVA--DPFK---YCDVV---TTTTHKSLRGPR-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 285 (447)
Q Consensus 215 ~~~--~~~~---~~Di~---~~s~~K~l~Gp~-gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~ 285 (447)
..+ +++. .+|++ ++|+||+|+|+. ||+++++++ ...++++.......+++|+...+|++.+|++.+
T Consensus 342 ~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-----i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~ 416 (715)
T 3n75_A 342 IYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-----VNEETFNEAYMMHTTTSPHYGIVASTETAAAMM 416 (715)
T ss_dssp GGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-----CCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHH
T ss_pred ccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-----hhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 222 2332 25765 899999999984 599999874 223344444333446789999999999999887
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHC-----C--cEeeeCC-----------------------C-----CCeeEEecCC
Q 013217 286 QSPEFKVYQNKVVSNCRALASRLVEL-----G--YKLVSGG-----------------------S-----DNHLVLVDLR 330 (447)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~L~~~-----g--~~~~~~~-----------------------~-----~~~~~~v~~~ 330 (447)
......+++++..++++++++.|.+. | ++++.+. . |.--++++.+
T Consensus 417 ~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~ 496 (715)
T 3n75_A 417 KGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTP 496 (715)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECS
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcC
Confidence 63345678899999999999999773 2 3443210 0 1111233433
Q ss_pred CC---------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 331 PM---------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 331 ~~---------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
.. |+++.++.++|+++||.+.... ...+=+ +.|.|-++++++++.++|.+.-..
T Consensus 497 ~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---------~~~vl~----l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 497 GMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---------PYNLLF----LFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp CBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE---------TTEEEE----ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccccCCCcHHHHHHHHHHCCCEEEecC---------CCcEEE----EeCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 5778899999999999986531 123333 333455589999999998876543
No 150
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.91 E-value=1.2e-22 Score=204.32 Aligned_cols=330 Identities=17% Similarity=0.171 Sum_probs=204.6
Q ss_pred eeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHH
Q 013217 23 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 100 (447)
Q Consensus 23 i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~ 100 (447)
+++.++.+ .+++++++++... .+ .|.......+++ +.+++++|.+. .+.+++|++|+.
T Consensus 45 lD~~~~~~~~~~~~~~~~a~~~~-~~----------~y~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~ 104 (456)
T 2ez2_A 45 IDLLTDSGTNAMSDKQWAGMMMG-DE----------AYAGSENFYHLE----RTVQELFGFKH-----IVPTHQGRGAEN 104 (456)
T ss_dssp EECSCSSSCCCCCHHHHHHHTTC-CC----------CSSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHH
T ss_pred eeeccccCCccCCHHHHHHhhcc-hh----------hcccChhHHHHH----HHHHHHhCCCc-----EEEeCCcHHHHH
Confidence 34444443 4568888887521 11 122333445555 57888888763 344578889999
Q ss_pred HHHHHhcCCCCEEEEecCCC-CcccCCCccccccccccccceeEEEecccCC----C-----CCCCCHHHHHHHhhhhCC
Q 013217 101 EVYTAILKPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----S-----TGLVDYDMLEKTAILFRP 170 (447)
Q Consensus 101 ~~~~al~~pgd~Vl~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~-----~~~id~~~l~~~~~~~~~ 170 (447)
.++.++++||| ++.++.| +++. ..+...|. +++.+++++ + ++.+|+++|++++++ ++
T Consensus 105 ~al~~l~~~gd--i~~~~~~~~~~~--------~~~~~~G~--~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~t 171 (456)
T 2ez2_A 105 LLSQLAIKPGQ--YVAGNMYFTTTR--------YHQEKNGA--VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDE-KG 171 (456)
T ss_dssp HHHHHHCCTTC--EEEESSCCHHHH--------HHHHHTTC--EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHH-HC
T ss_pred HHHHHhCCCCC--EeccccccchhH--------HHHHHcCC--EEEEecccccccccccccccCCCCHHHHHHHHHh-cc
Confidence 99999999999 6667766 3321 12334554 455555542 2 267899999999986 45
Q ss_pred ----cEEEEcCCCC-CC--CCC---hHHHHHHHHHhCCEEEEehhhhcc---------ccccccCCC----CC-CcccEE
Q 013217 171 ----KLIIAGASAY-PR--DFD---YPRMRQIADAVGALLMMDMAHISG---------LVAASVVAD----PF-KYCDVV 226 (447)
Q Consensus 171 ----klii~~~~~~-~~--~~~---~~~i~~ia~~~g~~livD~a~~~g---------~~~~~~~~~----~~-~~~Di~ 226 (447)
++|++++++| ++ ..+ +++|.++|++||+++|+|++|+.| ....+.... .+ ...|++
T Consensus 172 ~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~ 251 (456)
T 2ez2_A 172 AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGC 251 (456)
T ss_dssp GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEE
T ss_pred ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEE
Confidence 8888886665 54 555 899999999999999999999775 333332100 00 136888
Q ss_pred EeCCCcccCCCCCceEEeecCCcchhhHHHHhhhccC--CC--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217 227 TTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF--PG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR 302 (447)
Q Consensus 227 ~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~--~~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~ 302 (447)
++|+||+++.++||+++++++ ++.+.+..... .+ ..++.+...+++++.++..... +++.++..++.+
T Consensus 252 ~~S~kk~~~~~~gG~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~---~~~~~~~~~~~~ 323 (456)
T 2ez2_A 252 TMSGKKDCLVNIGGFLCMNDD-----EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVKQVR 323 (456)
T ss_dssp EEETTTTTCCSSCEEEEESCH-----HHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred EEeCcccCCCCceeEEEECCH-----HHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH---HHHHHHHHHHHH
Confidence 888999866567899998542 56655443211 11 1223333344443333322211 355677778888
Q ss_pred HHHHHHHHCCcEeeeCCCCCeeEEecCCC--CCCCHHHH-----HHHH-hhcCeEEcc-CC--CCCCC-----CCCCCCe
Q 013217 303 ALASRLVELGYKLVSGGSDNHLVLVDLRP--MGIDGARV-----EKIL-DMASITLNK-NS--VPGDK-----SALVPGG 366 (447)
Q Consensus 303 ~l~~~L~~~g~~~~~~~~~~~~~~v~~~~--~~~~~~~~-----~~~L-~~~gI~v~~-~~--~p~~~-----~~~~~~~ 366 (447)
++.+.|.+.|+++..+ ...+++++++.. .+.+..++ .+.| .++||.+.. +. .+... .....+.
T Consensus 324 ~l~~~L~~~g~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~ 402 (456)
T 2ez2_A 324 YLGDKLKAAGVPIVEP-VGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLET 402 (456)
T ss_dssp HHHHHHHHTTCCBCSS-CCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred HHHHHHhcCCCccccC-CCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCe
Confidence 9999998888876543 335666766531 23334444 5555 788997532 21 11100 0112368
Q ss_pred EEEecCcc-ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 367 IRIGSPAM-TTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 367 iRig~~~~-~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+|++++.. ++ ++|++++++.|++++...
T Consensus 403 iRis~~~~~~t----~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 403 VRLTIPRRVYT----YAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp EEEECCTTTCC----HHHHHHHHHHHHHHHHTG
T ss_pred EEEEeCCCCCC----HHHHHHHHHHHHHHHhhh
Confidence 99998864 44 999999999999988753
No 151
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.91 E-value=1.2e-23 Score=209.12 Aligned_cols=285 Identities=18% Similarity=0.162 Sum_probs=189.8
Q ss_pred CCHHHHHHHHHHHHHhhcCeeEecCCCCCCHHHHHHHhhhhhccC-CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC
Q 013217 4 CNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD 82 (447)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~~i~l~~~~n~~~~~v~~a~~~~~~~~~-~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~ 82 (447)
..+++.+.+.+|.+++...++.++.+| .+.|++++........ ..+..+..| +....+.++ +++++++|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~n--~~~vl~A~~~~~~~~~~~~~~~g~~y--~~~~~~~l~----~~la~~~g~~ 81 (431)
T 3ht4_A 10 KIAPIVKEVESQITEVHKRADEVIESN--QFRVLESFGKHKISDSHFIPTTGYGY--DDIGRDTLE----KVYADVFGAE 81 (431)
T ss_dssp TSHHHHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHTTCCGGGSCCCCTTCC--SCHHHHHHH----HHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhchhhhhcCCCCCCCC--ChhhHHHHH----HHHHHHhCCC
Confidence 345555666678888888898888888 6788888876432211 112222222 222234444 6899999998
Q ss_pred CCccceeeecCCcHHHHHHHHHHhcCCCCEEEEec-CCCCcccCCCccc--cccccccccceeEEEecccCCCCCCCCHH
Q 013217 83 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFMT--PKRRVSGTSIYFESMPYRLDESTGLVDYD 159 (447)
Q Consensus 83 ~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~-~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~id~~ 159 (447)
.+. +.++++||++|+..++.++++|||+|++.+ +.|+++....... ....+...|. +++.+++++ ++.+|++
T Consensus 82 ~~~--~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~--~~~~v~~~~-~~~~d~e 156 (431)
T 3ht4_A 82 AGL--VRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI--GYNAVPLTE-GGLVDFE 156 (431)
T ss_dssp EEC--CBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC--EEEECCBCT-TSSBCHH
T ss_pred ccc--ccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC--EEEEeCCCC-CCCcCHH
Confidence 542 234468999999999999999999999998 7777653210000 0011223343 566666763 5789999
Q ss_pred HHHHHhhhhCCcEEEEc-CCCCCC-----CCChHHHHHHHHH--hCCEEEEehhhhccccccccCCCCCC-cccEEEeCC
Q 013217 160 MLEKTAILFRPKLIIAG-ASAYPR-----DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT 230 (447)
Q Consensus 160 ~l~~~~~~~~~klii~~-~~~~~~-----~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~ 230 (447)
+|++++++ +|++|+++ +++||+ ..|+++|+++|++ +|+++++|++|+.+.... .|.. ++|++++|+
T Consensus 157 ~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~----~~~~~g~Di~~~S~ 231 (431)
T 3ht4_A 157 AVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ----EPCHVGADLMAGSL 231 (431)
T ss_dssp HHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC----CGGGTTCSEEEEET
T ss_pred HHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC----CccccCCeEEEcCc
Confidence 99999987 89999998 456554 3468999999999 999999999986554211 1222 589999999
Q ss_pred CcccCC---CCCceEEeecCCcchhhHHHHhhhccC-CCC--CCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217 231 HKSLRG---PRGGMIFFKKDPVLGVELESAINNAVF-PGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304 (447)
Q Consensus 231 ~K~l~G---p~gG~i~~~~~~~~~~~~~~~i~~~~~-~~~--~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l 304 (447)
||+|+| +.||++++++ ++.+.+..... ++. ..++.......+..+++. ...++++..++++.+
T Consensus 232 sK~lgg~~~~~GG~v~~~~------~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~a~~l 300 (431)
T 3ht4_A 232 IKNPGGGIVKTGGYIVGKE------QYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFL-----APHVAGQALKGAIFT 300 (431)
T ss_dssp TSGGGTTTCSSCEEEEECH------HHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCceEEEEecH------HHHHHHHHHhccCCcccccCccHHHHHHHHhHhhh-----HHHHHHHHHHHHHHH
Confidence 999876 7889999987 77777655222 221 112211111111222322 345678899999999
Q ss_pred HHHHHHCCcEeee
Q 013217 305 ASRLVELGYKLVS 317 (447)
Q Consensus 305 ~~~L~~~g~~~~~ 317 (447)
++.|++.|+++.+
T Consensus 301 ~~~L~~~g~~v~p 313 (431)
T 3ht4_A 301 AAFLEKLGMNTSP 313 (431)
T ss_dssp HHHHHHHTCCEES
T ss_pred HHHHHhCcCEecC
Confidence 9999999988744
No 152
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.91 E-value=3.9e-23 Score=205.22 Aligned_cols=344 Identities=10% Similarity=0.006 Sum_probs=207.7
Q ss_pred hcCeeEecCCCCCCH----HHHHHHhhhhhccC----CCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC--CCcccee
Q 013217 20 FKSLELIASENFTSR----AVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVN 89 (447)
Q Consensus 20 ~~~i~l~~~~n~~~~----~v~~a~~~~~~~~~----~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~--~~~~~~~ 89 (447)
...++|-.+.+...+ .+.+++...+.+.. ..+|+. .....++++...+++.+.+|.. +++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~~---- 100 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDG------PQGKTALLNALAVLLRETLGWDIEPQN---- 100 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTC------TTSHHHHHHHHHHHHHHHHCCCCCGGG----
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCC------CCCcHHHHHHHHHHHHHHhCCCCCccc----
Confidence 456888777665533 45566655543310 012322 2224456555556666666644 443
Q ss_pred eecCCcH-HHHHHHHHHhcCCCC-----EEEEe-cCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHH
Q 013217 90 VQPLSGS-PANFEVYTAILKPHD-----RIMGL-DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 162 (447)
Q Consensus 90 v~~~sGs-~a~~~~~~al~~pgd-----~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~ 162 (447)
|.+|+|+ +|+..++.++++||| +|+++ +|.|.++....... . ...+....+.+++.+..++.+|+++++
T Consensus 101 i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~d~~~l~ 176 (417)
T 3g7q_A 101 IALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLED--D--LFVSARPNIELLPEGQFKYHVDFEHLH 176 (417)
T ss_dssp EEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-------C--CEEECCCEEEEEGGGEEEEECCGGGCC
T ss_pred EEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccch--h--hhccccCcccccCCcccccccCHHHhc
Confidence 3335555 999999999999988 89987 88776653211000 0 111222344443332123568999888
Q ss_pred HHhhhhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccc---ccccCCCCCCcccEEEeCCCccc
Q 013217 163 KTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLV---AASVVADPFKYCDVVTTTTHKSL 234 (447)
Q Consensus 163 ~~~~~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~---~~~~~~~~~~~~Di~~~s~~K~l 234 (447)
+.+ ++++|+++.++||+ ..+ +++|.++|++||+++|+|++|..... ..+..+ .....++++.|+||++
T Consensus 177 --~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~ 252 (417)
T 3g7q_A 177 --IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARP-LWNPNIILCMSLSKLG 252 (417)
T ss_dssp --CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCC-CCCTTEEEEEESGGGT
T ss_pred --ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccccc-CCCCCEEEEEechhcc
Confidence 554 78999988788875 566 78999999999999999999753211 111111 1124678899999963
Q ss_pred -CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH----H-HHHHHHHHHHHHHHHH
Q 013217 235 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK----V-YQNKVVSNCRALASRL 308 (447)
Q Consensus 235 -~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~----~-~~~~~~~~~~~l~~~L 308 (447)
+|.|.|+++.++ ++.+.+.........++ +....+++...++. ..+. + ..+++.++++.+.+.|
T Consensus 253 ~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (417)
T 3g7q_A 253 LPGSRCGIIIAND------KTITAIANMNGIISLAP-GGMGPAMMCEMIKR---NDLLRLSETVIKPFYYQRVQQTIAII 322 (417)
T ss_dssp CTTSCCEEEECCH------HHHHHHHHHHHHHCCCC-CSHHHHHHHHHHHT---TCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEeCH------HHHHHHHHhhcceeeCC-CcHHHHHHHHHHcC---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466779999877 67776654322212222 33333333334432 2222 2 3455667777788887
Q ss_pred HHC----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCC--CCC--CCCeEEEecCccccCCCC
Q 013217 309 VEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SAL--VPGGIRIGSPAMTTRGFS 380 (447)
Q Consensus 309 ~~~----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~~~--~~~~iRig~~~~~~~g~~ 380 (447)
.+. |+.+..+ ....++|+++...+.+..++.+.|.++||.+..+...+.. .+. ..+.+|++++. +
T Consensus 323 ~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~---- 395 (417)
T 3g7q_A 323 RRYLSEERCLIHKP-EGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--E---- 395 (417)
T ss_dssp HHHCCTTTCEEECC-CBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--C----
T ss_pred HHhcccCCceeeCC-CcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--C----
Confidence 662 5766543 3456778888654667888999999999999764322111 000 14589999863 4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013217 381 EKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 381 ~~di~~l~~~i~~~l~~~ 398 (447)
++++++.++.|.+++...
T Consensus 396 ~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 396 PDKIEAGVKILAEEIERA 413 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999988754
No 153
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.91 E-value=6.3e-23 Score=204.87 Aligned_cols=339 Identities=14% Similarity=0.114 Sum_probs=205.8
Q ss_pred cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-H
Q 013217 21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 97 (447)
Q Consensus 21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~ 97 (447)
+.|+|..+++. .++.|++++.+.+.+. ..+..... |+......++++.+.+++.+.+++++++ |.+++|+ +
T Consensus 57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~-y~~~~g~~~l~~~ia~~~~~~~~~~~~~----i~~t~G~~~ 130 (432)
T 3ei9_A 57 QVISLGIGDTTEPIPEVITSAMAKKAHEL-STIEGYSG-YGAEQGAKPLRAAIAKTFYGGLGIGDDD----VFVSDGAKC 130 (432)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHHHHT-TSTTTCCC-CCCTTCCHHHHHHHHHHHHTTTTCCGGG----EEEESCHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcc-cccCCccC-CCCCCCCHHHHHHHHHHHHccCCCCcce----EEECCChHH
Confidence 46888766653 6899999998877631 11111111 2222223456655555555545766653 3447777 5
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc----------eeEEEecccCCC-CCCCCHHHHHHHhh
Q 013217 98 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDES-TGLVDYDMLEKTAI 166 (447)
Q Consensus 98 a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~-~~~id~~~l~~~~~ 166 (447)
++. ++.++++|||+|++.+|.|.++... +...|. ..+++.++++.+ +...|+++ .
T Consensus 131 al~-~l~~l~~~gd~Vl~~~p~y~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~ 196 (432)
T 3ei9_A 131 DIS-RLQVMFGSNVTIAVQDPSYPAYVDS--------SVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V 196 (432)
T ss_dssp HHH-HHHHHHCTTCCEEEEESCCTHHHHH--------HHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C
T ss_pred HHH-HHHHHcCCCCEEEEeCCCCHHHHHH--------HHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C
Confidence 555 4688899999999999998876421 112221 012334444422 23455432 2
Q ss_pred hhCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCC--C---CcccEEEeCCCccc--
Q 013217 167 LFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--F---KYCDVVTTTTHKSL-- 234 (447)
Q Consensus 167 ~~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~--~---~~~Di~~~s~~K~l-- 234 (447)
.++++|+++.++||+ ..+ +++|.++|+++|+++|+|++|..+ ...+..... + ...++++.|+||++
T Consensus 197 -~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 274 (432)
T 3ei9_A 197 -GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMY-MSDDNPRSIFEIPGAEEVAMETASFSNYAGF 274 (432)
T ss_dssp -CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-CCSSCCSSGGGSTTGGGTEEEEEESHHHHCT
T ss_pred -CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhh-ccCCCCCChhhcCCCCCeEEEEecchhccCC
Confidence 378999988888886 444 567778899999999999998643 222211111 1 13468999999987
Q ss_pred CCCCCceEEeecCCc--chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217 235 RGPRGGMIFFKKDPV--LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG 312 (447)
Q Consensus 235 ~Gp~gG~i~~~~~~~--~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 312 (447)
+|.|.|+++++++.. ....+.+.+....... .++++....++...++........++..+++.++++.+.+.|.+.|
T Consensus 275 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 353 (432)
T 3ei9_A 275 TGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC-FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG 353 (432)
T ss_dssp TTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHS-CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccceEEEEEChHHhhcchHHHHHHHHHHhccc-cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 577789999987410 0000144443321111 2334444444444444321113356778889999999999999989
Q ss_pred cEeeeCCCCCeeEEecCCCCCCCHHHHHHH-HhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217 313 YKLVSGGSDNHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391 (447)
Q Consensus 313 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i 391 (447)
+++..+ ..++++|+++. +.+..++... ++++||.++.+..++ +...+.+|+++ .++ ++++++.++.|
T Consensus 354 ~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ll~~~gv~v~~g~~f~---~~~~~~iRis~--~~~----~e~l~~~l~rl 421 (432)
T 3ei9_A 354 YDVYGG-KNAPYVWVHFP--NQSSWDVFAEILEKTHVVTTPGSGFG---PGGEGFVRVSA--FGH----RENILEACRRF 421 (432)
T ss_dssp CCEEEC-SSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGGC---GGGTTEEEEEC--CSC----HHHHHHHHHHH
T ss_pred ceecCC-CcceEEEEECC--CCCHHHHHHHHHHHCCEEEeCchHhC---CCCCCEEEEEe--cCC----HHHHHHHHHHH
Confidence 887754 34566788886 4456665554 566799997653332 12356899995 334 88988888877
Q ss_pred HHH
Q 013217 392 HEG 394 (447)
Q Consensus 392 ~~~ 394 (447)
++.
T Consensus 422 ~~~ 424 (432)
T 3ei9_A 422 KQL 424 (432)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 154
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.91 E-value=6.2e-23 Score=205.35 Aligned_cols=290 Identities=13% Similarity=0.069 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHh-cCCCCEEEEecCCCCcccCCCcccccccccccccee
Q 013217 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF 142 (447)
Q Consensus 65 ~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al-~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 142 (447)
.++....++++++++|++++ ++.+++|+ .++.+++.++ +++||+|+++.+.|+++..... ......|.
T Consensus 107 ~~~~~~~~~~la~~~g~~~~----~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~----~~a~~~G~-- 176 (438)
T 1wyu_A 107 LQATFEYQTMIAELAGLEIA----NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLR----AYLEAVGA-- 176 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSEE----CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHH----HHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhCCCcc----ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHH----HHHHHCCC--
Confidence 34445677899999999864 33345655 4545555553 6899999999998876532110 00122454
Q ss_pred EEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC-CCChHHHHHHHHHhCCEEEEehh-hhccccccccCCCCC
Q 013217 143 ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMA-HISGLVAASVVADPF 220 (447)
Q Consensus 143 ~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~-~~~~~~i~~ia~~~g~~livD~a-~~~g~~~~~~~~~~~ 220 (447)
+++.++. +++.+|+++ +++ +|++|+++.+|..+ ..|+++|.++|+++|+++++|.. ++.|... .+-
T Consensus 177 ~v~~v~~--~~~~~d~~~----i~~-~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~-----~~~ 244 (438)
T 1wyu_A 177 KLLTLPL--EGGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK-----PPG 244 (438)
T ss_dssp EEEEECC--BTTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC-----CHH
T ss_pred EEEEEcC--cCCccCHHH----hCC-CeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC-----CCc
Confidence 4445444 346788776 555 79999998774444 77999999999999999997754 5455321 111
Q ss_pred C-cccEEEeCCCc-----ccCCCCCceEEeecCCcchhhHHHHhhhcc------CC-----------------CCCCCCc
Q 013217 221 K-YCDVVTTTTHK-----SLRGPRGGMIFFKKDPVLGVELESAINNAV------FP-----------------GLQGGPH 271 (447)
Q Consensus 221 ~-~~Di~~~s~~K-----~l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~------~~-----------------~~~g~p~ 271 (447)
. ++|++++|+|| |++||++|++++++ ++.+.+.... .. ...++++
T Consensus 245 ~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~------~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~ 318 (438)
T 1wyu_A 245 AYGADIAVGDGQSLGLPMGFGGPHFGFLATKK------AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSN 318 (438)
T ss_dssp HHTCSEEEEECTTTTCCCGGGCSCCEEEEECG------GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCC
T ss_pred cCCCCEEEECCcccCCCccCCCCCeeEEEEcH------HHHHhCCCceeccccccCCCcceeeeccccccccchhcccCC
Confidence 1 48999999777 78899669999987 4444331100 00 0013333
Q ss_pred H---HHHHHHHHH--HHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhh
Q 013217 272 N---HTIGGLAVC--LKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM 345 (447)
Q Consensus 272 ~---~~~aal~~a--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~ 345 (447)
. ..+++++++ +..+...++++..+++.++++++.+.|++. |+++..+. ..+.++.+.. +.+..++.+.|.+
T Consensus 319 ~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~~-~~~~~~~~~~L~~ 395 (438)
T 1wyu_A 319 ITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK--PFFNEFALAL-PKDPEAVRRALAE 395 (438)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS--SBCSEEEEEC-SSCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC--CeEEEEEEeC-CCCHHHHHHHHHH
Confidence 3 344555444 554444567888899999999999999986 99887542 2222222221 2367889999988
Q ss_pred cCeEE--ccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 346 ASITL--NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 346 ~gI~v--~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
+||.+ +.+.. +.++.+|++++..++ ++|++++++.|++++
T Consensus 396 ~gi~v~~~~~~~------~~~~~lRis~~~~~t----~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 396 RGFHGATPVPRE------YGENLALFAATELHE----EEDLLALREALKEVL 437 (438)
T ss_dssp TTCCCCEECCTT------SCSSEEEEECCTTCC----HHHHHHHHHHHHHHC
T ss_pred CCceeccccccc------cCCCeEEEEecccCC----HHHHHHHHHHHHHHh
Confidence 99988 32210 114689999988787 999999999987653
No 155
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.5e-22 Score=205.59 Aligned_cols=328 Identities=11% Similarity=0.035 Sum_probs=207.9
Q ss_pred CCHHHHHHHhhhhhccC---CCCCCCCcccCchhHHHHHHHHHHHHHHHHcC-C--CCCccceeeecCCcH-HHHHHHHH
Q 013217 32 TSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFN-L--DENKWGVNVQPLSGS-PANFEVYT 104 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~---~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g-~--~~~~~~~~v~~~sGs-~a~~~~~~ 104 (447)
.|..+.+++...+.... ..+|+.. .....+++.+.+++.+..| . +++ +|.+++|+ +++..++.
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~------~G~~~lr~~ia~~~~~~~gG~~~~~~----~i~~t~G~~~ai~~~~~ 171 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSAS------QGVNCIREDVAAYITRRDGGVPADPD----NIYLTTGASDGISTILK 171 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------C------CSCHHHHHHHHHHHHHHTTTCCCCGG----GEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCC------CCHHHHHHHHHHHHHHhcCCCCCCcc----cEEEcCCHHHHHHHHHH
Confidence 46666666655555321 1123322 2233455555567777774 5 344 33346766 89999999
Q ss_pred HhcCCCC----EEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhh----CCcEEEE
Q 013217 105 AILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF----RPKLIIA 175 (447)
Q Consensus 105 al~~pgd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~----~~klii~ 175 (447)
+++++|| +|++..|.|.++.. .+...|. ++++++++++ ++.+|+++|++++++. ++++|++
T Consensus 172 ~l~~~gd~~~d~Vlv~~p~y~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l 241 (498)
T 3ihj_A 172 ILVSGGGKSRTGVMIPIPQYPLYSA--------VISELDA--IQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCI 241 (498)
T ss_dssp HHCCCCGGGSEEEEEEESCCTHHHH--------HHHHTTC--EEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEE
T ss_pred HHcCCCCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEE
Confidence 9999876 99999998876532 2344554 5666666643 5689999999999874 5899888
Q ss_pred cCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCCCCc------------c-cEEEeCCCccc--
Q 013217 176 GASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFKY------------C-DVVTTTTHKSL-- 234 (447)
Q Consensus 176 ~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~~~~------------~-Di~~~s~~K~l-- 234 (447)
+.++||+ ..+ +++|.++|+++|+++++|++|... .+.+. ...++.. . -+++.|+||++
T Consensus 242 ~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G 320 (498)
T 3ihj_A 242 INPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDN-VYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMG 320 (498)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC-BCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTC
T ss_pred ECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcccc-ccCCCCCcCCHHHHHHHhcccccCceeEEEEecccccccc
Confidence 8888886 444 678999999999999999997443 33221 1111111 1 26778999998
Q ss_pred -CCCCCceEEe---ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH----------hcChhHHHHHHHHHHH
Q 013217 235 -RGPRGGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH----------AQSPEFKVYQNKVVSN 300 (447)
Q Consensus 235 -~Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~----------~~~~~~~~~~~~~~~~ 300 (447)
+|.|+||+++ ++ ++.+.+...... ...++....++++.++.. .. ....+..+++.++
T Consensus 321 ~~G~R~G~~~~~~~~~------~l~~~l~~~~~~--~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~-~~~~~~~~~l~~~ 391 (498)
T 3ihj_A 321 ECGYRGGYMEVINLHP------EIKGQLVKLLSV--RLCPPVSGQAAMDIVVNPPVAGEESFEQFS-REKESVLGNLAKK 391 (498)
T ss_dssp CSSSCCEEEEEESCCH------HHHHHHHHHHHH--SCCCCHHHHHHHHHHTCCCCTTSTTHHHHH-HHHHHHHHHHHHH
T ss_pred CcccceEEEEEecCCH------HHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCccCcccHHHHH-HHHHHHHHHHHHH
Confidence 4889999984 44 666666543221 123344444444444321 00 1124556778889
Q ss_pred HHHHHHHHHHC-CcEeeeCCCCCeeEEecCCC----------CCCCHHH--HHHHHhhcCeEEccCCCCCCCCCCCCCeE
Q 013217 301 CRALASRLVEL-GYKLVSGGSDNHLVLVDLRP----------MGIDGAR--VEKILDMASITLNKNSVPGDKSALVPGGI 367 (447)
Q Consensus 301 ~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~----------~~~~~~~--~~~~L~~~gI~v~~~~~p~~~~~~~~~~i 367 (447)
++.+.+.|.+. |+++..+ ..+.+.|+++.. .+++.++ +.++|+++||.+..+..++.. ..+.++
T Consensus 392 ~~~l~~~L~~~~g~~~~~p-~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~--~~~~~~ 468 (498)
T 3ihj_A 392 AKLTEDLFNQVPGIHCNPL-QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR--EGTYHF 468 (498)
T ss_dssp HHHHHHHHHTSTTEECCCC-CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC--TTCCBE
T ss_pred HHHHHHHHhcCCCcEecCC-CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC--CCCCEE
Confidence 99999999885 8877653 335555655432 1344444 467788899998665333321 134589
Q ss_pred EEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 368 RIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 368 Rig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
|+++. ++ +++++++++.|.++++..
T Consensus 469 Ris~~--~~----~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 469 RMTIL--PP----VEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp EEECC--SC----HHHHHHHHHHHHHHHHHH
T ss_pred EEEeC--CC----HHHHHHHHHHHHHHHHHH
Confidence 99973 44 899999999999888754
No 156
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.91 E-value=7e-23 Score=204.24 Aligned_cols=294 Identities=13% Similarity=0.010 Sum_probs=189.9
Q ss_pred HHHHHHcCCCCCccceeeecCCcH-HHH--HHHHHHhcC--C----------CCEEEEecCCCCcccCCCcccccccccc
Q 013217 73 KRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILK--P----------HDRIMGLDLPHGGHLSHGFMTPKRRVSG 137 (447)
Q Consensus 73 ~~~~~~~g~~~~~~~~~v~~~sGs-~a~--~~~~~al~~--p----------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 137 (447)
+.+++++++++++ |.+|+|+ +++ ..++.++++ | ||+|++.+|.|.++.. .+..
T Consensus 85 ~~ia~~~~~~~~~----i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~--------~~~~ 152 (427)
T 3ppl_A 85 QIWADLLGVPVEQ----VLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS--------ITER 152 (427)
T ss_dssp HHHHHHHTSCGGG----EEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------HHHH
T ss_pred HHHHHHhCCCcce----EEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH--------HHHH
Confidence 5677788888764 3347776 777 367788776 6 9999999998876532 2334
Q ss_pred ccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCC--CCChH---HHHHHH-HHhCCEEEEehhhhccc
Q 013217 138 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR--DFDYP---RMRQIA-DAVGALLMMDMAHISGL 210 (447)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~-~~~~~~--~~~~~---~i~~ia-~~~g~~livD~a~~~g~ 210 (447)
.|. +++++++++ ++ +|+++|+++++..++++|++. .++||+ ..+.+ +|.++| +++|+++|+|++|.. +
T Consensus 153 ~g~--~~~~v~~~~-~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~-~ 227 (427)
T 3ppl_A 153 FGF--EMISVPMNE-DG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAV-H 227 (427)
T ss_dssp TTC--EEEEEEEET-TE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTT-C
T ss_pred cCC--EEEEeCCCC-CC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcc-c
Confidence 454 555666664 33 999999999964478998876 567775 66666 888888 899999999999743 2
Q ss_pred cccccCCCC-----------CCcccEEEeCCCccc-CCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHH
Q 013217 211 VAASVVADP-----------FKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 278 (447)
Q Consensus 211 ~~~~~~~~~-----------~~~~Di~~~s~~K~l-~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal 278 (447)
.+.+....+ ....++++.|+||++ +|.|.|+++.++ ++.+.+.........++ +.....++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~------~l~~~~~~~~~~~~~~~-~~~~q~~~ 300 (427)
T 3ppl_A 228 TLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA------ENRKWYTGHAGIRGIGP-NKVNQLAH 300 (427)
T ss_dssp BSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHHHHHHCSCC-CHHHHHHH
T ss_pred ccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH------HHHHHHHHHhhcccCCC-CHHHHHHH
Confidence 222211111 113568899999984 577789999987 67666654322111222 33333333
Q ss_pred HHHHHHh--cChhHHHHHHHHHHHHHHHHHHHHH----C-CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEc
Q 013217 279 AVCLKHA--QSPEFKVYQNKVVSNCRALASRLVE----L-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 351 (447)
Q Consensus 279 ~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~----~-g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~ 351 (447)
+.+++.. .....++..+.+.++.+.+.+.|.+ . ++.+..+ ...+++|+++... +..++.+.|.++||.+.
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~ 377 (427)
T 3ppl_A 301 ARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP-AGGYFISLDVVPG--TASRVAELAKEAGIALT 377 (427)
T ss_dssp HHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC-SBSSCEEEECSTT--CHHHHHHHHHHTTEECC
T ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC-CccEEEEEECCcc--hHHHHHHHHHHCCCEEe
Confidence 3333320 0122344555666666777777654 2 4555443 3466778887642 57788889999999996
Q ss_pred c-CCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 352 K-NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 352 ~-~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
. +...+.......+++|+++... + ++++++.++.|.++++..
T Consensus 378 ~~g~~~~~~~~~~~~~~Ris~~~~-~----~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 378 GAGSSYPLRQDPENKNLRLAPSLP-P----VEELEVAMDGVATCVLLA 420 (427)
T ss_dssp CTTTTSGGGCCTTSCEEEECCSSS-C----HHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCCCCCCCCCeEEEECCCC-C----HHHHHHHHHHHHHHHHHH
Confidence 5 2111100112356899998544 4 899999999999988754
No 157
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.90 E-value=4.6e-23 Score=200.44 Aligned_cols=329 Identities=11% Similarity=0.052 Sum_probs=203.9
Q ss_pred eEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217 24 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 103 (447)
Q Consensus 24 ~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~ 103 (447)
-|..+.++..+++++++...+ . +..+...|+..+...+++ +++++++|.+. .+.+++|++|+..++
T Consensus 14 ~l~~~~~p~~~~~~~~~~~~~----~-~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~~a~~~al 79 (357)
T 3lws_A 14 GQISGHGKRNVGVLKTAFAAV----A-DEMASDQYGTGAIIEPFE----QKFADVLGMDD-----AVFFPSGTMAQQVAL 79 (357)
T ss_dssp EESSBSSCCBHHHHHHHHTTS----C-TTCBCEETTEETTHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHh----h-cccCcccccCChHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHHHH
Confidence 345677777777766654321 1 112223345455566676 57888999864 244589999999999
Q ss_pred HHhcCCCC--EEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC
Q 013217 104 TAILKPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 181 (447)
Q Consensus 104 ~al~~pgd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~ 181 (447)
.+++++|| .|++.++.|...+... ......| .++++++. +++.+|+++++++. ++++|+++.++||
T Consensus 80 ~~~~~~gd~~~vi~~~~~~~~~~~~~-----~~~~~~g--~~~~~v~~--~~~~~d~~~l~~~~---~~~~v~~~~p~np 147 (357)
T 3lws_A 80 RIWSDETDNRTVAYHPLCHLEIHEQD-----GLKELHP--IETILVGA--ADRLMTLDEIKALP---DIACLLLELPQRE 147 (357)
T ss_dssp HHHHHHHTCCEEEECTTCHHHHSSTT-----HHHHHSS--CEEEECSC--TTSCCCHHHHHTCC---SCSEEEEESSBGG
T ss_pred HHHhhcCCCcEEEecccceeeeeccc-----hhhhccC--cEEEEecC--CCCCcCHHHHhcCc---CcceEEEEccccc
Confidence 99999998 6666655443332110 0112233 35555543 45689999999872 4899999877764
Q ss_pred --C-CC---ChHHHHHHHHHhCCEEEEehhhhccccc-cccCCCCC-CcccEEEeCCCcccCCCCCceEEeecCCcchhh
Q 013217 182 --R-DF---DYPRMRQIADAVGALLMMDMAHISGLVA-ASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVE 253 (447)
Q Consensus 182 --~-~~---~~~~i~~ia~~~g~~livD~a~~~g~~~-~~~~~~~~-~~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~ 253 (447)
+ .. ++++|.++|++||+++++|++|..+... .+.....+ ...|+++.|+||+++||.||+++.++ +
T Consensus 148 ~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~------~ 221 (357)
T 3lws_A 148 IGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPA------A 221 (357)
T ss_dssp GTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECH------H
T ss_pred CCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCH------H
Confidence 3 44 3889999999999999999997622111 11100011 24688899999999899999998877 6
Q ss_pred HHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEEecCC
Q 013217 254 LESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLR 330 (447)
Q Consensus 254 ~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~ 330 (447)
+.+.+.... +.+...+.+....+++ .+++.. .+..++..++++++.+.|++. |+++....+.++++|+++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~ 295 (357)
T 3lws_A 222 FCQTARIWKRRYGGDLISLYPYIVSAD-YYYELR-----KDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFD 295 (357)
T ss_dssp HHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHHH-----TTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEec
Confidence 766665321 1111111222222222 345442 223455677888999999885 8887432345667788875
Q ss_pred CCC-CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 331 PMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 331 ~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
..+ .+..++.+.|.++||.++.+..+. + ....+|++....+. ..+++++++..+.|.+++
T Consensus 296 ~~~~~~~~~~~~~l~~~Gi~v~~g~~~~---~-~~~~~r~~i~~~~~-~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 296 GQAADISPKLEQVQEETGLGFVGYLVDK---D-GYCSTEISVGDAYG-ELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SCHHHHHHHHHHHHHHHCEESCSCCEEC---S-SEEEEEEEBCTTGG-GSCHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHhcCeEEecccccC---C-CceEEEEEecchhh-hcCHHHHHHHHHHHHHhc
Confidence 421 125678888999999996542221 1 22378987653321 234777877777776653
No 158
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.90 E-value=6.9e-23 Score=197.12 Aligned_cols=283 Identities=13% Similarity=0.096 Sum_probs=187.7
Q ss_pred HHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC
Q 013217 72 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 151 (447)
Q Consensus 72 ~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 151 (447)
++.+++++|.+ + .+.++||++|+..++.++++|||+|+++++.|+++..... ......|. +++.++.
T Consensus 4 ~~~la~~~g~~-~----~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~-- 70 (331)
T 1pff_A 4 EGKIAKLEHAE-A----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFE----HQLRKFGV--EVDFIDM-- 70 (331)
T ss_dssp HHHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTTC--EEEEECT--
T ss_pred HHHHHHHhCCC-e----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHH----HHHHhcCC--EEEEeCC--
Confidence 36788999987 3 3556999999999999999999999999998877532110 00112343 4444332
Q ss_pred CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHH-hCCEEEEehhhhccccccccCCCCCCcccEEEe
Q 013217 152 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFKYCDVVTT 228 (447)
Q Consensus 152 ~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~-~g~~livD~a~~~g~~~~~~~~~~~~~~Di~~~ 228 (447)
.|++++++.+++ ++++|++++++||+ ..|+++|.++|++ +|+++++|++|+.|...... . .++|++++
T Consensus 71 ----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~---~~~d~~~~ 141 (331)
T 1pff_A 71 ----AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-D---LGVDIVVH 141 (331)
T ss_dssp ----TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-G---GTCSEEEE
T ss_pred ----CCHHHHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-h---cCCcEEEE
Confidence 578899998876 89999998777764 7799999999999 99999999999877543221 1 14899999
Q ss_pred CCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013217 229 TTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305 (447)
Q Consensus 229 s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~ 305 (447)
|+||++++|. +|+++++++ ++.+.+......+..++++.....+...+++. ...+.++..++.+.+.
T Consensus 142 s~~K~~~~~~~r~~G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~ 211 (331)
T 1pff_A 142 SATKYINGHTDVVAGLVCSRAD-----IIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKRAAENAQKVA 211 (331)
T ss_dssp ETTTTTSSSSSCCCEEEEECHH-----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred ECccccCCCCCceEEEEEeCcH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-----HHHHHHHHHHHHHHHH
Confidence 9999997664 689988863 56666766543312234444333332233432 3334556677777777
Q ss_pred HHHHHC-C--------------cEeeeC--CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC-----------
Q 013217 306 SRLVEL-G--------------YKLVSG--GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG----------- 357 (447)
Q Consensus 306 ~~L~~~-g--------------~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~----------- 357 (447)
+.|++. . +++..+ .....++.+.+. +..++.+.|.+.||.+...+..+
T Consensus 212 ~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~ 287 (331)
T 1pff_A 212 EFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASM 287 (331)
T ss_dssp HHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHH
T ss_pred HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC----CHHHHHHHHHhCCCceeccCCCCcceeeecchhh
Confidence 777653 1 111110 001234444443 56788899999999765431111
Q ss_pred -C---------CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 358 -D---------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 358 -~---------~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
. .....++.+|++++..++ +++++++.++|+++
T Consensus 288 ~~~~~~~~~~~~~g~~~~~iRis~~~~~t----~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 288 THAGVPKEEREAAGLTDNLIRLSVGCENV----QDIIDDLKQALDLV 330 (331)
T ss_dssp TSTTSCHHHHHHTTCCTTEEEEECCSSCH----HHHHHHHHHHHHTC
T ss_pred cccccCHHHHHhcCCCCCeEEEEEecCCH----HHHHHHHHHHHHHh
Confidence 0 001224789999998887 99999999988653
No 159
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.90 E-value=5.6e-22 Score=195.34 Aligned_cols=312 Identities=12% Similarity=0.060 Sum_probs=201.9
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCC--
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP-- 109 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~p-- 109 (447)
.+|.+.+++.+.+.. +. +.... ...+...+++ +++++++|.+. .+.++||++|+..++..+..+
T Consensus 53 ~~p~v~~a~~~~~~~-~~--~~~~~--~~~~~~~~l~----~~la~~~g~~~-----v~~~~~gt~a~~~al~~~~~~~~ 118 (392)
T 3ruy_A 53 RHPKIINALIDQANR-VT--LTSRA--FHSDQLGPWY----EKVAKLTNKEM-----VLPMNTGAEAVETAIKTARRWAY 118 (392)
T ss_dssp TCHHHHHHHHHHHTT-CS--CCCTT--SEETTHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cc--ccccc--cCCHHHHHHH----HHHHHhcCCCE-----EEEeCcHHHHHHHHHHHHHHhhh
Confidence 479999999887754 22 21111 1233344444 67888888432 244577889999988876544
Q ss_pred --------CCEEEEecCCCCcccCCCcccccc-cc--ccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 013217 110 --------HDRIMGLDLPHGGHLSHGFMTPKR-RV--SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 178 (447)
Q Consensus 110 --------gd~Vl~~~~~~~~~~~~~~~~~~~-~~--~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~ 178 (447)
||+|++..+.|.+........... .. .+......+..++ ..|+++|++++++ ++++|+++++
T Consensus 119 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~~~ 191 (392)
T 3ruy_A 119 DVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIP------YGDLEALKAAITP-NTAAFILEPI 191 (392)
T ss_dssp HTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEEC------TTCHHHHHHHCCT-TEEEEEECSS
T ss_pred hccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeC------cccHHHHHHHhcc-CeEEEEEeCc
Confidence 789999999886543110000000 00 0000000112211 1389999999985 8999999877
Q ss_pred CCCC--CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCCCcccCC--CCCceEEeecC
Q 013217 179 AYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTTHKSLRG--PRGGMIFFKKD 247 (447)
Q Consensus 179 ~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~~K~l~G--p~gG~i~~~~~ 247 (447)
+||+ ..+ +++|.++|++||+++++|++|+ |+...+.. ... .+ ..|++++| |+++| .++|++++++
T Consensus 192 ~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~- 267 (392)
T 3ruy_A 192 QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-GLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAANR- 267 (392)
T ss_dssp BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECH-
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEECH-
Confidence 7764 666 9999999999999999999984 43322211 100 11 25787665 99977 7889999987
Q ss_pred CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC---cEeeeCCCCCee
Q 013217 248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG---YKLVSGGSDNHL 324 (447)
Q Consensus 248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~~~~~~ 324 (447)
++.+.+......+. .+++...+++...+++.+.. ++..+++.++++++.+.|++.+ +....+ ...+
T Consensus 268 -----~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~ 336 (392)
T 3ruy_A 268 -----DILGVFEPGSHGST-FGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVRG--KGLF 336 (392)
T ss_dssp -----HHHTTCCTTSSCCS-STTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE--ETTE
T ss_pred -----HHHhhhccCCcCCC-CCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEEe--eeeE
Confidence 67766655433222 24455666666667776432 4567788899999999998864 222222 2334
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
+++.+.. +..++.+.|.++||.++.+ ..+.+|++++..++ ++|++++++.|++++
T Consensus 337 ~~~~~~~---~~~~l~~~l~~~gi~v~~~---------~~~~iRi~~~~~~~----~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 337 IGIELNE---PARPYCEQLKAAGLLCKET---------HENVIRIAPPLVIS----EEDLEWAFQKIKAVL 391 (392)
T ss_dssp EEEEESS---CSHHHHHHHHTTTEECCCB---------TTTEEEECCCTTCC----HHHHHHHHHHHHHHH
T ss_pred EEEEEcc---hHHHHHHHHHHCCcEEecC---------CCCEEEEECCCCCC----HHHHHHHHHHHHHHh
Confidence 5555543 5678888898999998532 14689999887777 999999999998875
No 160
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.90 E-value=1.3e-22 Score=201.90 Aligned_cols=339 Identities=14% Similarity=0.054 Sum_probs=208.4
Q ss_pred hhcCeeEecCCCC-----CCHHHHHHHhhhhh--cc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceee
Q 013217 19 QFKSLELIASENF-----TSRAVMEAVGSCLT--NK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV 90 (447)
Q Consensus 19 ~~~~i~l~~~~n~-----~~~~v~~a~~~~~~--~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v 90 (447)
+...|+|..+++. +++.+++++...+. .. ...+|+.. ....+++ +.+++++++++++ |
T Consensus 31 ~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~------~G~~~lr----~~ia~~~~~~~~~----i 96 (422)
T 3d6k_A 31 KNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGL------LGIADIR----ELWAEALGLPADL----V 96 (422)
T ss_dssp TTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCS------SCCHHHH----HHHHHHHTCCGGG----E
T ss_pred cCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCC------CCCHHHH----HHHHHHhCCChhH----E
Confidence 3456888888873 34467776654321 10 11234332 1123443 5677778888764 3
Q ss_pred ecCCcH-HHH--HHHHHHhcCC------------CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCC
Q 013217 91 QPLSGS-PAN--FEVYTAILKP------------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 155 (447)
Q Consensus 91 ~~~sGs-~a~--~~~~~al~~p------------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 155 (447)
.+|+|+ +++ ..++.++.++ +|+|++.+|.|.++.. .+...|. +++.+++++ ++
T Consensus 97 ~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~g- 164 (422)
T 3d6k_A 97 VAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFT--------ITEHFGF--EMINVPMTD-EG- 164 (422)
T ss_dssp EECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------HHHHHTC--EEEEEEEET-TE-
T ss_pred EEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHH--------HHHHcCC--EEEecCCCC-CC-
Confidence 347776 666 4556667655 4589999998876531 2334454 555555653 33
Q ss_pred CCHHHHHHHhhhhCCcEEE-EcCCCCCC--CCChH---HHHHHHH-HhCCEEEEehhhhc-cccccccCCCCC-------
Q 013217 156 VDYDMLEKTAILFRPKLII-AGASAYPR--DFDYP---RMRQIAD-AVGALLMMDMAHIS-GLVAASVVADPF------- 220 (447)
Q Consensus 156 id~~~l~~~~~~~~~klii-~~~~~~~~--~~~~~---~i~~ia~-~~g~~livD~a~~~-g~~~~~~~~~~~------- 220 (447)
+|++++++++++.++++|+ ++.++||+ ..+.+ +|.++|+ ++|+++|+|++|.. ++...+....++
T Consensus 165 ~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
T 3d6k_A 165 PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA 244 (422)
T ss_dssp ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT
T ss_pred CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc
Confidence 9999999999755789888 45677775 66665 7777787 89999999999863 333222111111
Q ss_pred --CcccEEEeCCCcc-cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc--ChhHHHHHH
Q 013217 221 --KYCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKVYQN 295 (447)
Q Consensus 221 --~~~Di~~~s~~K~-l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~--~~~~~~~~~ 295 (447)
...++++.|+||+ ++|.|.|++++++ ++.+.+......... +++....++...+++... ....++..+
T Consensus 245 ~~~~~~i~~~S~SK~~~~GlriG~~~~~~------~l~~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 317 (422)
T 3d6k_A 245 GNPNRFWFMSSTSKITHAGSGVSFFASSK------ENIEWYASHANVRGI-GPNKLNQLAHAQFFGDVAGLKAHMLKHAA 317 (422)
T ss_dssp TCTTCEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHHHHHHCS-CCCHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEcChhhhcCcccceEEEEeCH------HHHHHHHHHHHhhcC-CCCHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 1356889999997 3567889999987 677766543222222 234444444444443200 012344455
Q ss_pred HHHHHHHHHHHHHHH----CC-cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccC-CCCCCCCCCCCCeEEE
Q 013217 296 KVVSNCRALASRLVE----LG-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKN-SVPGDKSALVPGGIRI 369 (447)
Q Consensus 296 ~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~-~~p~~~~~~~~~~iRi 369 (447)
.+.++++.+.+.|.+ .| +.+..+ ...+++|+++... +..++.+.|.++||.+..+ ...........+++|+
T Consensus 318 ~~~~~~~~l~~~L~~~l~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRi 394 (422)
T 3d6k_A 318 SLAPKFERVLEILDSRLSEYGVAKWTSP-TGGYFISVDVVPG--TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRL 394 (422)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCEEECCC-SBSSCEEEEESTT--CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCcCCceEEeCC-CcceEEEEECCCC--CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEE
Confidence 566677777777765 33 554433 3456678887542 5677888999999999652 1110000012468999
Q ss_pred ecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 370 GSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 370 g~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
++.. ++ +++++++++.|++++...
T Consensus 395 s~~~-~~----~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 395 APSL-PP----VAELEVAMDGFATCVLMA 418 (422)
T ss_dssp CCSS-SC----HHHHHHHHHHHHHHHHHH
T ss_pred ecCC-CC----HHHHHHHHHHHHHHHHHH
Confidence 9876 55 899999999999887643
No 161
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.90 E-value=1.2e-22 Score=200.64 Aligned_cols=283 Identities=16% Similarity=0.142 Sum_probs=185.4
Q ss_pred HHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217 71 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 150 (447)
Q Consensus 71 ~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 150 (447)
.++++++++|.+. .+.++||++|+..++.++++|||+|++.++.|+++..... ......|. +++.++.
T Consensus 69 l~~~la~~~g~~~-----~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~- 136 (398)
T 2rfv_A 69 LEKKLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLS----HSMPKFGI--NVRFVDA- 136 (398)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHH----THHHHTTC--EEEEECT-
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHHcCC--EEEEeCC-
Confidence 3468889999862 3456899999999999999999999999998876532110 00123343 4445433
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEE
Q 013217 151 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT 227 (447)
Q Consensus 151 ~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~ 227 (447)
.|++++++++++ +|++|++++++||+ ..|+++|.++|+++|+++++|++|..+.... ++. ++|+++
T Consensus 137 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-----~~~~~~di~~ 205 (398)
T 2rfv_A 137 -----AKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ-----PLQLGADIVV 205 (398)
T ss_dssp -----TSHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-----GGGGTCSEEE
T ss_pred -----CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-----chhhCCcEEE
Confidence 289999999987 89999998877774 7899999999999999999999987665421 222 489999
Q ss_pred eCCCcccCCCC---CceEEeecCCcchhhHHH-HhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013217 228 TTTHKSLRGPR---GGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 303 (447)
Q Consensus 228 ~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~-~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~ 303 (447)
.|+||+++||. ||++++++ ++.+ .+.........++++....++...+++. ...+.++..++++.
T Consensus 206 ~s~sK~~~~~g~~~~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~ 274 (398)
T 2rfv_A 206 HSVTKYINGHGDVIGGIIVGKQ------EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-----LGIRMERHCENALK 274 (398)
T ss_dssp EETTTTTTCSSCCCCEEEEECH------HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHH
T ss_pred EeCcccccCCCCceEEEEEECH------HHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHH
Confidence 99999987654 49999887 5544 4443221110234455444444444432 34556777888888
Q ss_pred HHHHHHHCC---------------cEeeeC--CCCCeeEEecCCCCCCCHHHHHHHHhh---cCeEEccCCC------CC
Q 013217 304 LASRLVELG---------------YKLVSG--GSDNHLVLVDLRPMGIDGARVEKILDM---ASITLNKNSV------PG 357 (447)
Q Consensus 304 l~~~L~~~g---------------~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~L~~---~gI~v~~~~~------p~ 357 (447)
+.+.|++.+ +++..+ .....++++++.. ........+++ .||.++.+.. |.
T Consensus 275 l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~ 351 (398)
T 2rfv_A 275 IARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG---GLEAGRRMINSVELCLLAVSLGDTETLIQHPA 351 (398)
T ss_dssp HHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHTTCSSSEECSCCSSSSCEEECHH
T ss_pred HHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC---CHHHHHHHHHhCCcceeccCCCCcceeeeccc
Confidence 998887743 111110 0124555666642 12334444444 4666654421 10
Q ss_pred ---CC---------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 358 ---DK---------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 358 ---~~---------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
+. .....+.+|++++..++ +++++++.++|+++
T Consensus 352 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~----~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 352 SMTHSPVAPEERLKAGITDGLIRLSVGLEDP----EDIINDLEHAIRKA 396 (398)
T ss_dssp HHTSSSSCHHHHHHTTCCTTEEEEECCSSCH----HHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEecCCCH----HHHHHHHHHHHHhh
Confidence 00 01125689999998877 99999999888653
No 162
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.90 E-value=2.3e-22 Score=193.85 Aligned_cols=304 Identities=15% Similarity=0.104 Sum_probs=205.8
Q ss_pred cCeeEecCCCC--CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC---CCCCccceeeecCCc
Q 013217 21 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLSG 95 (447)
Q Consensus 21 ~~i~l~~~~n~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g---~~~~~~~~~v~~~sG 95 (447)
..+.|..+++. .++.+++++.+.+......+|+.. + ..+++ +.++++++ ++++. |.+++|
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----~---~~~lr----~~la~~~~~~~~~~~~----v~~~~G 84 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS----P---DEELI----EKILSYLDTDFLSKNN----VSVGNG 84 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS----S---CHHHH----HHHHHHHTCSSCCGGG----EEEESS
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC----c---hHHHH----HHHHHHcCCCCCCHHH----EEEcCC
Confidence 45888888883 579999999887632111234321 1 23444 56778888 66543 334666
Q ss_pred H-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217 96 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 96 s-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii 174 (447)
+ +++..++.++ ||+|++. |.|.++.. .+...|. +++.++++ +++.+|++++ + ++++|+
T Consensus 85 ~~~al~~~~~~~---gd~Vl~~-p~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l-----~-~~~~v~ 143 (335)
T 1uu1_A 85 ADEIIYVMMLMF---DRSVFFP-PTYSCYRI--------FAKAVGA--KFLEVPLT-KDLRIPEVNV-----G-EGDVVF 143 (335)
T ss_dssp HHHHHHHHHHHS---SEEEECS-SSCHHHHH--------HHHHHTC--EEEECCCC-TTSCCCCCCC-----C-TTEEEE
T ss_pred hHHHHHHHHHHh---CCcEEEC-CCcHHHHH--------HHHHcCC--eEEEeccC-CCCCCCHHHc-----C-CCCEEE
Confidence 5 8888888887 9999998 88766431 2233444 55566665 3467888876 3 789999
Q ss_pred EcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC-CCCcccEEEeCCCcccC--CCCCceEEeecCCc
Q 013217 175 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD-PFKYCDVVTTTTHKSLR--GPRGGMIFFKKDPV 249 (447)
Q Consensus 175 ~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~-~~~~~Di~~~s~~K~l~--Gp~gG~i~~~~~~~ 249 (447)
++.++||+ ..+.+++.++++..| ++++|++|+.. ........ .....+++++|+||+++ |.|.|++++++
T Consensus 144 l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--- 218 (335)
T 1uu1_A 144 IPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEF-HGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE--- 218 (335)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHH-HCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECH---
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhh-cchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCH---
Confidence 88778775 789999999999889 99999998532 21111110 00135789999999973 66779999977
Q ss_pred chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecC
Q 013217 250 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL 329 (447)
Q Consensus 250 ~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~ 329 (447)
++.+.+.....+ .+++....+++..+++.. ..+++..+++.++++++.+.|.+.|+++..+ ...++++++
T Consensus 219 ---~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~~ 288 (335)
T 1uu1_A 219 ---KFIDAYNRVRLP---FNVSYVSQMFAKVALDHR--EIFEERTKFIVEERERMKSALREMGYRITDS--RGNFVFVFM 288 (335)
T ss_dssp ---HHHHHHHHHSCT---TCSCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--CSSEEEEEC
T ss_pred ---HHHHHHHHhcCC---CCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCCcEEcCC--CCeEEEEEC
Confidence 777777654333 245555555555566541 2457778888999999999998878765432 344567776
Q ss_pred CCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 330 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 330 ~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
.. .+..++.+.|.++||.++. ..+.+|+++. + ++|++++.+.|+++
T Consensus 289 ~~--~~~~~~~~~l~~~gi~v~~----------~~~~iRis~~---~----~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 289 EK--EEKERLLEHLRTKNVAVRS----------FREGVRITIG---K----REENDMILRELEVF 334 (335)
T ss_dssp CT--HHHHHHHHHHHHHTEEEEE----------ETTEEEEECC---C----HHHHHHHHHHHHCC
T ss_pred CC--CCHHHHHHHHHHCCEEEEE----------CCCeEEEEeC---C----HHHHHHHHHHHHhh
Confidence 43 3566788888889999964 1358999963 3 67899988888653
No 163
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.90 E-value=5.6e-22 Score=197.59 Aligned_cols=289 Identities=16% Similarity=0.088 Sum_probs=187.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc
Q 013217 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 140 (447)
Q Consensus 61 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 140 (447)
++...+++ +++++++|.+. .+.++||++|+..++.+++++||+|++.++.|++.+.... ..+...|.
T Consensus 113 ~~~~~~l~----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G~ 179 (445)
T 1qgn_A 113 NPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE----TILPKMGI 179 (445)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHH----HTGGGGTC
T ss_pred ChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcCC
Confidence 34455555 68889999862 3556999999999999999999999999988877532100 01223343
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCC-cEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217 141 YFESMPYRLDESTGLVDYDMLEKTAILFRP-KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 217 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~-klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~ 217 (447)
+++.++.+ |++++++++++ +| ++|++++++||+ ..|+++|.++|+++|+++++|++|+.+...
T Consensus 180 --~v~~v~~~------d~~~l~~ai~~-~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~----- 245 (445)
T 1qgn_A 180 --TATVIDPA------DVGALELALNQ-KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ----- 245 (445)
T ss_dssp --EEEEECSS------CHHHHHHHHHH-SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----
T ss_pred --EEEEeCCC------CHHHHHHHhcc-CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence 44454332 89999999987 88 999999888775 789999999999999999999998766431
Q ss_pred CCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHH
Q 013217 218 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 293 (447)
Q Consensus 218 ~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~ 293 (447)
.++. ++|++++|+||+++|+. +|++++++ ++.+.+...... ..++++...... +++.+. .+..+
T Consensus 246 ~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~------~l~~~l~~~~~~-~g~~~~~~~a~~---~~~~l~--~l~~r 313 (445)
T 1qgn_A 246 KALALGADLVLHSATKFLGGHNDVLAGCISGPL------KLVSEIRNLHHI-LGGALNPNAAYL---IIRGMK--TLHLR 313 (445)
T ss_dssp CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH------HHHHHHHHHHHH-HCCCCCHHHHHH---HHHHGG--GHHHH
T ss_pred CccccCCEEEEECCcccccccccceEEEEEECH------HHHHHHHHHHHH-hCCCCCHHHHHH---HHHhHH--HHHHH
Confidence 2333 58999999999998775 79999987 666665432211 112233332211 222222 34566
Q ss_pred HHHHHHHHHHHHHHHHHC-Cc-EeeeCCC---------------CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCC
Q 013217 294 QNKVVSNCRALASRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP 356 (447)
Q Consensus 294 ~~~~~~~~~~l~~~L~~~-g~-~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p 356 (447)
++++.++++.+.+.|++. ++ .+..++. ...++.+.+.........+.+.|+..+|.++.+...
T Consensus 314 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~ 393 (445)
T 1qgn_A 314 VQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCE 393 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCc
Confidence 788888999999999884 55 3433311 233445555421001223333443346665543211
Q ss_pred C------C------------CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 357 G------D------------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 357 ~------~------------~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
. . .....++.||+|++ .||++.+.+.|++++.
T Consensus 394 sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--------~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 394 SIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--------VEDFDDLKADILQALD 443 (445)
T ss_dssp CEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--------SSCHHHHHHHHHHHHH
T ss_pred eeeecccccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence 0 0 01122468999976 4689999999988775
No 164
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.90 E-value=3e-21 Score=191.57 Aligned_cols=290 Identities=17% Similarity=0.174 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccce
Q 013217 62 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY 141 (447)
Q Consensus 62 ~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 141 (447)
+...+++ +++++++|.+. .+.++||++|+..++.+++++||+|++..+.|++.+.... ..+...|.
T Consensus 56 ~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~- 121 (412)
T 2cb1_A 56 PTAKALE----ERLKALEGALE-----AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFG----QVLSLMGV- 121 (412)
T ss_dssp HHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHH----HTTTTTTC-
T ss_pred hHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcCC-
Confidence 3444554 68889999862 2445788899999999999999999999998876532110 00122343
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCC
Q 013217 142 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP 219 (447)
Q Consensus 142 ~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~ 219 (447)
+++.++. |+++|++++++ +|++|+++.++|++ ..|+++|.++|+++|+++++|++|+.+... ..+
T Consensus 122 -~~~~~~~-------~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~ 188 (412)
T 2cb1_A 122 -TVRYVDP-------EPEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL----CRP 188 (412)
T ss_dssp -EEEEECS-------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS----CCG
T ss_pred -EEEEECC-------CHHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc----CCc
Confidence 4445432 48999999987 89999998777764 789999999999999999999999765111 112
Q ss_pred CC-cccEEEeCCCcccCCCCC--ceEEeecCCcc------h----------------hhHHHHhhhccCCCCCC-CCcHH
Q 013217 220 FK-YCDVVTTTTHKSLRGPRG--GMIFFKKDPVL------G----------------VELESAINNAVFPGLQG-GPHNH 273 (447)
Q Consensus 220 ~~-~~Di~~~s~~K~l~Gp~g--G~i~~~~~~~~------~----------------~~~~~~i~~~~~~~~~g-~p~~~ 273 (447)
.. ++|++++|+||+++||.+ |++++.++... . .++.+.+....... .| ..+..
T Consensus 189 ~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~-~g~~~~~~ 267 (412)
T 2cb1_A 189 LAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSL-CGMALSPF 267 (412)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTT-TCCCCCHH
T ss_pred cccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHh-cCCCCChH
Confidence 22 489999999999987654 66555442100 0 02233333321111 12 12221
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEeee-CCC---------------CCeeEEecCCCCCCCH
Q 013217 274 TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVS-GGS---------------DNHLVLVDLRPMGIDG 336 (447)
Q Consensus 274 ~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~-~~~---------------~~~~~~v~~~~~~~~~ 336 (447)
. + +.++..+ ..+.++.++..++++++.+.|.+ .++..+. ++. ...++.+.+ + +.
T Consensus 268 ~-a--~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~---~-~~ 338 (412)
T 2cb1_A 268 N-A--YLLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL---G-DL 338 (412)
T ss_dssp H-H--HHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC---S-SH
T ss_pred H-h--HHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe---C-CH
Confidence 1 1 1122222 23456677788899999999988 4777442 221 122344444 3 67
Q ss_pred HHHHHHHhhcCeEEccCC---------CCCCCC------------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 337 ARVEKILDMASITLNKNS---------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 337 ~~~~~~L~~~gI~v~~~~---------~p~~~~------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
+.+.+.|++.||.+ ..+ .|.... ...++.||++++..++ +++++.+.++|++
T Consensus 339 ~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~----~~~i~~l~~al~~ 411 (412)
T 2cb1_A 339 ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDP----LDLLALFEEALEA 411 (412)
T ss_dssp HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCH----HHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCH----HHHHHHHHHHHhh
Confidence 88899999999998 542 221110 0115789999999988 9999999988864
No 165
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.83 E-value=2.7e-25 Score=219.21 Aligned_cols=336 Identities=14% Similarity=0.118 Sum_probs=216.6
Q ss_pred cCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCCcH
Q 013217 21 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS 96 (447)
Q Consensus 21 ~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~sGs 96 (447)
..++|..+++ ..++.+.+++.+.+.+. ..+|+.. ..++++...+++.+.+| .+++ +|.+++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~----~v~~~~g~ 98 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-VYGYTYA--------SDELLQAVLDWEKSEHQYSFDKE----DIVFVEGV 98 (392)
Confidence 4567766655 34688889888766431 1233221 33555555567777777 4444 23346664
Q ss_pred -HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC--CCCCCHHHHHHHhhhhCCcEE
Q 013217 97 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLI 173 (447)
Q Consensus 97 -~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~~~~~~~kli 173 (447)
+|+.+++.+++++||+|++..|.|.++.. .+...|. +++.++++++ ++.+|++++++++++.++++|
T Consensus 99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v 168 (392)
T 3b1d_A 99 VPAISIAIQAFTKEGEAVLINSPVYPPFAR--------SVRLNNR--KLVSNSLKEENGLFQIDFEQLENDIVENDVKLY 168 (392)
Confidence 89999999999999999999988876532 2233343 4445555322 356899999999874478998
Q ss_pred EEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-------CcccEEEeCCCccc--CCCCC
Q 013217 174 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSL--RGPRG 239 (447)
Q Consensus 174 i~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-------~~~Di~~~s~~K~l--~Gp~g 239 (447)
+++.++||+ .. ++++|.++|+++|+++|+|++|.. +...+....++ ...++++.|++|++ +|.|.
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 247 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQD-LTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKN 247 (392)
Confidence 888777775 33 489999999999999999999753 33322111111 12458889999997 57788
Q ss_pred ceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-C-CcEeee
Q 013217 240 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLVS 317 (447)
Q Consensus 240 G~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~ 317 (447)
|+++++++ ++.+.+.....+...++++....++...+++.. ...+++..+++.++++.+.+.|++ . |+.+..
T Consensus 248 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 321 (392)
T 3b1d_A 248 SYAIIENP-----TLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMK 321 (392)
Confidence 99998763 466666554333322344444444444455532 233566777888888888888876 3 776654
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 318 GGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 318 ~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+ ..+++.|+++...+.+..++.+.|. ++||.+..+..++ +..++.+|+++.. + ++++++.++.|.++++
T Consensus 322 ~-~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~iRi~~~~--~----~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 322 P-QGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYG---SEGELHARLNIAA--P----KSLVEEICKRIVCCLP 391 (392)
Confidence 3 3355556777543345667777774 8899996542221 1124579998542 3 6888888888877654
No 166
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.89 E-value=5.2e-22 Score=196.23 Aligned_cols=331 Identities=14% Similarity=0.140 Sum_probs=198.9
Q ss_pred hcCeeEecCCC--CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH--cC-CCCCccceeeecCC
Q 013217 20 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA--FN-LDENKWGVNVQPLS 94 (447)
Q Consensus 20 ~~~i~l~~~~n--~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~--~g-~~~~~~~~~v~~~s 94 (447)
+..|+|..+++ ..+|.+++++...+..... . .+...|+......+++ +.++++ +| ++++. |.+++
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~-~~~~~y~~~~g~~~lr----~~la~~l~~g~~~~~~----v~~~~ 102 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIARLSS-P-TTCRGYGPDFGLPALR----QKLSEDFYRGFVDAKE----IFISD 102 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHHHTS-S-SCCCCCCCTTCCHHHH----HHHHHTTSTTSSCGGG----EEEES
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhcccc-c-ccccCCCCCCCCHHHH----HHHHHHHHcCCCCHHH----EEEcc
Confidence 35678877766 3578999998877654210 0 0011121111123444 456666 57 55543 33467
Q ss_pred cH-HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCCcE
Q 013217 95 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKL 172 (447)
Q Consensus 95 Gs-~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~kl 172 (447)
|+ +++..+ ..+++|||+|++.+|.|.++.. .+...|.. .++.++++++ ....|+++ . .++++
T Consensus 103 G~~~al~~~-~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~-~~~~~~~~~~~~~~~~l~~----~--~~~~~ 166 (400)
T 3asa_A 103 GAKVDLFRL-LSFFGPNQTVAIQDPSYPAYLD--------IARLTGAK-EIIALPCLQENAFFPEFPE----D--THIDI 166 (400)
T ss_dssp CHHHHHHHH-HHHHCSSCEEEEEESCCHHHHH--------HHHHTTCS-EEEEEECCGGGTTCCCCCT----T--CCCSE
T ss_pred ChHHHHHHH-HHHcCCCCEEEECCCCcHHHHH--------HHHHcCCc-ceEecccchhcCcccChhh----c--cCccE
Confidence 66 777764 4567899999999998876531 22334543 0444445422 22344322 1 37899
Q ss_pred EEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C---cccEEEeCCCccc--CCCCC
Q 013217 173 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K---YCDVVTTTTHKSL--RGPRG 239 (447)
Q Consensus 173 ii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~---~~Di~~~s~~K~l--~Gp~g 239 (447)
|+++.++||+ ..+ +++|.++|+++|+++|+|++|. ++...+..+.++ + ..+++++|+||++ +|.|.
T Consensus 167 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Glri 245 (400)
T 3asa_A 167 LCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS-TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRL 245 (400)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCC
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhh-hhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchhe
Confidence 9998778875 555 5678899999999999999975 332222111111 1 1348899999997 46777
Q ss_pred ceEEeecCCcchhhH-------HHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC
Q 013217 240 GMIFFKKDPVLGVEL-------ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG 312 (447)
Q Consensus 240 G~i~~~~~~~~~~~~-------~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 312 (447)
|+++++++ + .+.+.........++++....+++..+++.. +.++..+++.++++.+.+.|.+.|
T Consensus 246 G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~g 316 (400)
T 3asa_A 246 GWTVIPQE------LTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLATG 316 (400)
T ss_dssp EEEECCTT------CBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEeeChh------hccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999874 3 2322211001112344555555555566653 345667888899999999999889
Q ss_pred cEeeeCCCCCeeEEec-CCCCCCCHHHHHHHH-hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217 313 YKLVSGGSDNHLVLVD-LRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 390 (447)
Q Consensus 313 ~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~ 390 (447)
+++..+ ....++|++ +. .+.+..++.+.| +++||.+..+...+ +...+.+|++. .++ +++++++++.
T Consensus 317 ~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~~g~~f~---~~~~~~iRis~--~~~----~e~i~~~l~~ 385 (400)
T 3asa_A 317 FEVFGG-EHAPYLWVKPTQ-ANISDRDLFDFFLREYHIAITPGIGFG---RSGSGFVRFSS--LGK----REDILAACER 385 (400)
T ss_dssp CEEEEC-SSSSEEEEECCC-TTCCTTTHHHHHHHHHSEECEEGGGGC---GGGTTCEEEEC--CSC----HHHHHHHHHH
T ss_pred CeeeCC-CCceEEEEeccC-CCCCHHHHHHHHHHhCCEEEeChhHhC---CCCCCEEEEEe--eCC----HHHHHHHHHH
Confidence 887654 235567888 54 244555566555 56799987542221 11245799983 445 8999999999
Q ss_pred HHHHHHH
Q 013217 391 IHEGVEI 397 (447)
Q Consensus 391 i~~~l~~ 397 (447)
|++++..
T Consensus 386 l~~~~~~ 392 (400)
T 3asa_A 386 LQMAPAL 392 (400)
T ss_dssp HHC----
T ss_pred HHHHHHh
Confidence 9887764
No 167
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.89 E-value=1.2e-21 Score=190.01 Aligned_cols=313 Identities=13% Similarity=0.112 Sum_probs=210.2
Q ss_pred hcCeeEecCCCCC--CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-
Q 013217 20 FKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS- 96 (447)
Q Consensus 20 ~~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs- 96 (447)
+..|+|..++|+. ++.+++++...+.. ..+|+... . .++ ++++++++|++++. |.+++|+
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~~------~-~~l----r~~la~~~~~~~~~----i~~t~g~~ 77 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNC--IRHYPEPD------A-GTL----RQMLAKRNSVDNNA----ILVTNGPT 77 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGG--GGSCCCTT------C-HHH----HHHHHHHTTCCGGG----EEEESHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhH--HhcCCCCc------H-HHH----HHHHHHHhCcCHHH----EEEcCCHH
Confidence 5678888887754 78999999887733 23454431 1 234 36788899988753 3346665
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCCCCCCHHHHHHHhhhhCCcEEEE
Q 013217 97 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIA 175 (447)
Q Consensus 97 ~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~~~~~~~klii~ 175 (447)
+++..++.++. ||+|++..|.|.++.. .+...|. +++.+++ ++ .+.+++ + ++++|++
T Consensus 78 ~al~~~~~~l~--gd~Vi~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~-~~~~~~--------~-~~~~v~i 135 (350)
T 3fkd_A 78 AAFYQIAQAFR--GSRSLIAIPSFAEYED--------ACRMYEH--EVCFYPSNED-IGEADF--------S-NMDFCWL 135 (350)
T ss_dssp HHHHHHHHHTT--TCEEEEEESCCHHHHH--------HHHHTTC--EEEEEETTSC-GGGSCC--------T-TCSEEEE
T ss_pred HHHHHHHHHHC--CCEEEEeCCCcHHHHH--------HHHHcCC--eEEEEecCCc-cccCcc--------C-CCCEEEE
Confidence 89998888887 9999999988766531 2334454 5555556 42 233444 3 7999999
Q ss_pred cCCCCCC--CCChHHHHHHHHHhC-CEEEEehhhhccccccccCC-CCCC--cccEEEeCCCcccC--CCCCceEEeecC
Q 013217 176 GASAYPR--DFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVA-DPFK--YCDVVTTTTHKSLR--GPRGGMIFFKKD 247 (447)
Q Consensus 176 ~~~~~~~--~~~~~~i~~ia~~~g-~~livD~a~~~g~~~~~~~~-~~~~--~~Di~~~s~~K~l~--Gp~gG~i~~~~~ 247 (447)
+.++||+ ..+.+++.++++.++ .++++|++|. ++...+... ..++ ..+++++|+||+++ |.|.|++++++
T Consensus 136 ~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~- 213 (350)
T 3fkd_A 136 CNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYV-SFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK- 213 (350)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTT-TSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH-
T ss_pred eCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchh-hhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCH-
Confidence 8888875 789999999999886 7999999974 333322111 1111 24588999999874 67789999976
Q ss_pred CcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeCCCCCeeEE
Q 013217 248 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVL 326 (447)
Q Consensus 248 ~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 326 (447)
++.+.+.....+ .+++....+++..+++... .+.+..++..++++.+.+.|++. |+++..+ ...+++
T Consensus 214 -----~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~ 281 (350)
T 3fkd_A 214 -----DFMKRVAAFSTP---WAVNALAIEAAKFILIHPA--QFTLPIRKWQRNTVDFITALNRLDGVEVHPS--GTTFFL 281 (350)
T ss_dssp -----HHHHHHHTTCCT---TCSCHHHHHHHHHHHHCTT--TTCCCHHHHHHHHHHHHHHHHHSTTEEECCC--SSSEEE
T ss_pred -----HHHHHHHHhCCC---CCCCHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHhcCCCcEECCC--CCcEEE
Confidence 787777665432 2445555555555665432 13233444558889999999885 8887543 344556
Q ss_pred ecCCCCCCCHHHHHHHHhh-cCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 327 VDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 327 v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
+.+... +..++.+.|.+ +||.++.+...+ +...+.+|+++. + ++|++++.++|++++..
T Consensus 282 ~~~~~~--~~~~l~~~L~~~~gi~v~~g~~f~---~~~~~~iRis~~---~----~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 282 LRLKKG--TAAELKKYMLEEYNMLIRDASNFR---GLDESYVRITTQ---R----PAQNQLFIKALETFLEK 341 (350)
T ss_dssp EEESSS--CHHHHHHHHHHTTCEECEECTTST---TCCTTEEEEECC---C----HHHHHHHHHHHHHHHTC
T ss_pred EECCCC--CHHHHHHHHHHHCCEEEEeCccCC---CCCCCEEEEEcC---C----HHHHHHHHHHHHHHHHH
Confidence 666532 67888888877 999997543221 223568999864 3 88999999999888764
No 168
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.89 E-value=1.5e-22 Score=200.41 Aligned_cols=289 Identities=13% Similarity=0.066 Sum_probs=186.4
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217 60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 139 (447)
Q Consensus 60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 139 (447)
+++..+++| +++++++|.+. .+.++||++|+.+++.++++|||+|++.++.|++.+.... ..+...|
T Consensus 80 ~~p~~~~le----~~lA~l~g~~~-----~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~l~~~G 146 (415)
T 2fq6_A 80 GTLTHFSLQ----QAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCS----KILSKLG 146 (415)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHH----HTGGGGT
T ss_pred CCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcC
Confidence 445566666 57889999863 2445899999999999999999999999998877642110 0112234
Q ss_pred ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHH--hCCEEEEehhhhcccccccc
Q 013217 140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASV 215 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~--~g~~livD~a~~~g~~~~~~ 215 (447)
. ++..++. .|++++++++++ +|++|++..++||+ ..|+++|+++|++ +|+++++|++|+.+..
T Consensus 147 ~--~v~~v~~------~d~~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~---- 213 (415)
T 2fq6_A 147 V--TTSWFDP------LIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL---- 213 (415)
T ss_dssp C--EEEEECT------TCGGGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS----
T ss_pred c--EEEEECC------CCHHHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc----
Confidence 3 4444332 278999999987 89999998877775 7899999999999 9999999999876532
Q ss_pred CCCCCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccC-CCCCCCCcHHHHHHHHHHHHHhcChhH
Q 013217 216 VADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEF 290 (447)
Q Consensus 216 ~~~~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~-~~~~g~p~~~~~aal~~al~~~~~~~~ 290 (447)
..|+. ++|++++|+||+++|+. +|++++++ ++.+.+..... .+ +.+.......+..+++ .+
T Consensus 214 -~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~------~~~~~l~~~~~~~G--~~~~~~~a~~~~~~l~-----~l 279 (415)
T 2fq6_A 214 -FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNA------RCWEQLRENAYLMG--QMVDADTAYITSRGLR-----TL 279 (415)
T ss_dssp -SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECT------TTHHHHHHHHHHTT--CCCCHHHHHHHHHHHH-----HH
T ss_pred -CCccccCCeEEEEeCccccCCCCCceEEEEEeCH------HHHHHHHHHHHhcC--CCCCHHHHHHHHhhhh-----HH
Confidence 12333 58999999999997764 68998887 44454443211 11 1222221111112222 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CcE-eeeCC---------------CCCeeEEecCCCCCCCHHHHHHHHhh---cCeEE
Q 013217 291 KVYQNKVVSNCRALASRLVEL-GYK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDM---ASITL 350 (447)
Q Consensus 291 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~---~gI~v 350 (447)
..+.++..+|+..+++.|++. .+. +..++ ....++.+.+.. +.+..+...++.. .+|.+
T Consensus 280 ~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g-~~~~~~~~~~l~~l~~~~~a~ 358 (415)
T 2fq6_A 280 GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK-KLNNEELANYLDNFSLFSMAY 358 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS-CCCHHHHHHHHTTCSSCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-CCCHHHHHHHHHhCCcCeEec
Confidence 566788889999999999874 333 21221 023344555542 1123445555544 44555
Q ss_pred ccCC------C--CC---C-----CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 351 NKNS------V--PG---D-----KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 351 ~~~~------~--p~---~-----~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
+.+. . |. + .-....+.||+|+...++ +++++.+.++|++
T Consensus 359 s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~----~d~i~~l~~al~~ 413 (415)
T 2fq6_A 359 SWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDV----DDLIADLDAGFAR 413 (415)
T ss_dssp CCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCH----HHHHHHHHHHHHT
T ss_pred cCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCH----HHHHHHHHHHHHh
Confidence 5431 1 21 1 011224689999998888 8999888888764
No 169
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.89 E-value=1.7e-21 Score=190.51 Aligned_cols=303 Identities=17% Similarity=0.150 Sum_probs=195.0
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH---hc-
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---IL- 107 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a---l~- 107 (447)
.++.+++++...+.+. +.+..+| . .....++ ++++++++|++ +. .+.+++|++|+..++.+ +.
T Consensus 45 ~~~~v~~a~~~~~~~~---~~~~~~y-~-~~~~~~l----~~~la~~~g~~-~~---v~~~~g~t~a~~~~~~~~~~~~~ 111 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKL---LHVSNLY-E-NPWQEEL----AHKLVKHFWTE-GK---VFFANSGTESVEAAIKLARKYWR 111 (375)
T ss_dssp SCHHHHHHHHHHHHHC---SCCCTTB-C-CHHHHHH----HHHHHHTSSSC-EE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc---cccCccc-C-CHHHHHH----HHHHHhhcCCC-Ce---EEEeCchHHHHHHHHHHHHHHhc
Confidence 6899999998877542 2222233 2 2223334 46888899983 32 23345566999888764 35
Q ss_pred --CCC-CEEEEecCCCCcccCCCccccccccccccce-----eE-----EEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217 108 --KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FE-----SMPYRLDESTGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 108 --~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~-----~~~~~~~~~~~~id~~~l~~~~~~~~~klii 174 (447)
+|| |+|++.++.|.+..... ....+.. +. +..++ ..|+++|++++++ ++++|+
T Consensus 112 ~~~~g~~~vl~~~~~y~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~ 177 (375)
T 2eh6_A 112 DKGKNKWKFISFENSFHGRTYGS-------LSATGQPKFHKGFEPLVPGFSYAK------LNDIDSVYKLLDE-ETAGII 177 (375)
T ss_dssp HTTCCCCEEEEEBTCCCCSSHHH-------HHHCBCGGGTTTTCSCCSSEEEEC------TTCHHHHHTTCCT-TEEEEE
T ss_pred cCCCCCCEEEEECCCcCCCchhh-------hhhcCCccccCCCCCCCCCceeCC------CchHHHHHHHhcC-CeEEEE
Confidence 789 99999998876542110 0111110 00 11111 1589999998876 899999
Q ss_pred EcCCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CC-CCCC-cccEEEeCCCcccCC-CCCceEEe
Q 013217 175 AGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLRG-PRGGMIFF 244 (447)
Q Consensus 175 ~~~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~-~~~~-~~Di~~~s~~K~l~G-p~gG~i~~ 244 (447)
++++++++ ..+ +++|.++|+++|+++++|++|+ ++...+. .. ..++ ..|++++| |++++ .+.|++++
T Consensus 178 ~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~ 254 (375)
T 2eh6_A 178 IEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-GIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILA 254 (375)
T ss_dssp ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEE
T ss_pred EeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEE
Confidence 98777764 447 9999999999999999999986 3322221 00 0111 26888666 98864 45599999
Q ss_pred ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCee
Q 013217 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL 324 (447)
Q Consensus 245 ~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 324 (447)
++ ++.+.+.........+++ ....++...+++... ++.+++.++++++.+.|++.+.....+ ...+
T Consensus 255 ~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~~~--~g~~ 320 (375)
T 2eh6_A 255 RE------EVAQSFTPGSHGSTFGGN-PLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGKVKG--RGLM 320 (375)
T ss_dssp EH------HHHTTCCTTSCCCSSTTC-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSEEEE--ETTE
T ss_pred cH------HHHhhhcCCCCCCCCCCC-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCceE--EEEE
Confidence 87 676666553222233443 333333344555432 567788888999999998866433332 2456
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 325 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 325 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
+++++.. +..++.+.|.++||.+... .++.+|++++..++ ++|++++++.|+++
T Consensus 321 ~~~~~~~---~~~~~~~~l~~~gi~~~~~---------~~~~iRi~~~~~~~----~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 321 LGLELER---ECKDYVLKALEKGLLINCT---------AGKVLRFLPPLIIQ----KEHIDRAISVLREI 374 (375)
T ss_dssp EEEECSS---CCHHHHHHHHHTTEECEEE---------TTTEEEECCCTTCC----HHHHHHHHHHHHHH
T ss_pred EEEEEcC---cHHHHHHHHHHCCCEEecC---------CCCEEEEECCCCCC----HHHHHHHHHHHHHh
Confidence 6777753 3567888888899998532 14589999886666 99999999998765
No 170
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.89 E-value=4.1e-22 Score=200.99 Aligned_cols=327 Identities=18% Similarity=0.208 Sum_probs=198.9
Q ss_pred HHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC----C
Q 013217 34 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----P 109 (447)
Q Consensus 34 ~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~----p 109 (447)
+++.+++...+.... . .|+......+++ +++++++|.+. .+.+++|++|+..++.++++ |
T Consensus 55 ~~v~~a~~~~~~~~~-~------~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~ggt~A~~~al~~~~~~~~~~ 118 (467)
T 1ax4_A 55 NAMSDHQWAAMITGD-E------AYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKE 118 (467)
T ss_dssp CCEEHHHHHHHHTCC-C------CSSSCHHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcc-c------ccccCccHHHHH----HHHHHHcCCCc-----EEEcCCcHHHHHHHHHHHHHhhccC
Confidence 566666655543210 1 123333445554 57888888742 23446678999999999988 9
Q ss_pred CCE---EEEecCCCCcccCCCccccccccccccceeEEEeccc----CC-----CCCCCCHHHHHHHhhhh---CCcEEE
Q 013217 110 HDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL----DE-----STGLVDYDMLEKTAILF---RPKLII 174 (447)
Q Consensus 110 gd~---Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~-----~~~~id~~~l~~~~~~~---~~klii 174 (447)
||+ |++. ..|.+... ..+...|. +++.... +. .++.+|+++|++++++. ++++|+
T Consensus 119 Gd~~~~viv~-~~~~~~~~-------~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi 188 (467)
T 1ax4_A 119 GKAKNPVFIS-NFHFDTTA-------AHVELNGC--KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIV 188 (467)
T ss_dssp TCCSSCEEEE-SSCCHHHH-------HHHHHTTC--EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEE
T ss_pred CCccceEEEe-ccccchhh-------HHHhccCC--ceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEE
Confidence 998 8887 33321100 11223343 2222211 11 14579999999999753 689999
Q ss_pred EcCCCCCC---CC---ChHHHHHHHHHhCCEEEEehhhhc-ccc--------ccccCCCCC-----CcccEEEeCCCccc
Q 013217 175 AGASAYPR---DF---DYPRMRQIADAVGALLMMDMAHIS-GLV--------AASVVADPF-----KYCDVVTTTTHKSL 234 (447)
Q Consensus 175 ~~~~~~~~---~~---~~~~i~~ia~~~g~~livD~a~~~-g~~--------~~~~~~~~~-----~~~Di~~~s~~K~l 234 (447)
+++++|++ .. ++++|+++|++||+++|+|++|.. |.. ..+.....+ ..+|++++|+||++
T Consensus 189 ~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~ 268 (467)
T 1ax4_A 189 STVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP 268 (467)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT
T ss_pred EeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccC
Confidence 88666553 33 468999999999999999998765 221 111100001 23689999999998
Q ss_pred CCCCCceEEeecCCcchhhHHHHhhhcc--CCC--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217 235 RGPRGGMIFFKKDPVLGVELESAINNAV--FPG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE 310 (447)
Q Consensus 235 ~Gp~gG~i~~~~~~~~~~~~~~~i~~~~--~~~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 310 (447)
+.|.||+++.+++. ++.+.+.... ..+ ..++.+...+++++.+++.... .+..++..++++.+.+.|.+
T Consensus 269 g~~~Gg~~~~~d~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 341 (467)
T 1ax4_A 269 LLNIGGLVAIRDNE----EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE 341 (467)
T ss_dssp CCSSCEEEEESSCH----HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEeCCHH----HHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh
Confidence 66657888877310 2333332210 011 2234444445555556665443 22344555778899999988
Q ss_pred CCcEeeeCCCCCeeEEec-------CCCCCCCHHHHHHHH-hhcCeEEcc-CCC-----C--CCCCCCCCCeEEEecCcc
Q 013217 311 LGYKLVSGGSDNHLVLVD-------LRPMGIDGARVEKIL-DMASITLNK-NSV-----P--GDKSALVPGGIRIGSPAM 374 (447)
Q Consensus 311 ~g~~~~~~~~~~~~~~v~-------~~~~~~~~~~~~~~L-~~~gI~v~~-~~~-----p--~~~~~~~~~~iRig~~~~ 374 (447)
.|+++..+ ...+.+|++ +...+.+..++.+.| .++||.+.. +.. | +...+...+.+|++++..
T Consensus 342 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~ 420 (467)
T 1ax4_A 342 AGIPIQYP-TGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 420 (467)
T ss_dssp TTCCBCSS-CCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred CCCCcccC-CCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccc
Confidence 88876543 345667777 322234567788877 899999875 311 1 100011236899998843
Q ss_pred -ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 375 -TTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 375 -~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
++ ++|++++++.|+++++..
T Consensus 421 ~~t----~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 421 VYT----NDHMDYIADALIGLKEKF 441 (467)
T ss_dssp SSC----HHHHHHHHHHHHTTHHHH
T ss_pred cCC----HHHHHHHHHHHHHHHHhh
Confidence 44 999999999999988753
No 171
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.89 E-value=8e-22 Score=195.06 Aligned_cols=290 Identities=18% Similarity=0.144 Sum_probs=188.7
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217 60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 139 (447)
Q Consensus 60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 139 (447)
+.+...+++ +++++++|.+. .+.+++|++|+..++.++++|||+|++.++.|+++..... ..+...|
T Consensus 60 ~~~~~~~l~----~~ia~~~g~~~-----~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g 126 (404)
T 1e5e_A 60 GNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE----HALTKFG 126 (404)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred cChHHHHHH----HHHHHHhCCCc-----EEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcC
Confidence 344445555 67888889862 3446888899999999999999999999999877542110 0123345
Q ss_pred ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHH-hCCEEEEehhhhccccccccC
Q 013217 140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVV 216 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~-~g~~livD~a~~~g~~~~~~~ 216 (447)
. +++.++++ |++++++++++ +|++|++++++||+ ..|+++|.++|++ +|+++++|++|+.+...
T Consensus 127 ~--~~~~v~~~------d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~---- 193 (404)
T 1e5e_A 127 I--QVDFINTA------IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT---- 193 (404)
T ss_dssp C--EEEEECTT------STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC----
T ss_pred C--EEEEECCC------CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC----
Confidence 4 45554442 78999999987 89999998887775 7799999999999 99999999998765421
Q ss_pred CCCCC-cccEEEeCCCcccCCC--C-CceEEeecCCcchhhHHH-HhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217 217 ADPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291 (447)
Q Consensus 217 ~~~~~-~~Di~~~s~~K~l~Gp--~-gG~i~~~~~~~~~~~~~~-~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~ 291 (447)
.|+. ++|+++.|+||++++| | +|++++++ ++.+ .+.........++++.....+...+++ ...
T Consensus 194 -~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~------~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~-----~~~ 261 (404)
T 1e5e_A 194 -NPVDFGVDVVVHSATKYINGHTDVVAGLICGKA------DLLQQIRMVGIKDITGSVISPHDAWLITRGLS-----TLN 261 (404)
T ss_dssp -CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT-----THH
T ss_pred -CccccCCEEEEEcCccccCCCCCCeEEEEEECH------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHh-----HHH
Confidence 1222 4899999999998765 4 49999988 5655 666543322023344433333333333 244
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-cE-eeeCC---------------CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC
Q 013217 292 VYQNKVVSNCRALASRLVELG-YK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS 354 (447)
Q Consensus 292 ~~~~~~~~~~~~l~~~L~~~g-~~-~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~ 354 (447)
.+.++..++++.+.+.|++.. +. +..+. ....++.+++.. ...++.+.|++.||.+....
T Consensus 262 ~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~i~~~~~s 338 (404)
T 1e5e_A 262 IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS---GFEGAKKLLDNLKLITLAVS 338 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHHTCSSSEESSC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC---CHHHHHHHHHhCCCceeccC
Confidence 567777888888888887743 21 11110 013334446542 13567778888998443211
Q ss_pred C---------CCCC------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 355 V---------PGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 355 ~---------p~~~------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
. |... ....++.+|++++. +|++++.+.|++++...
T Consensus 339 ~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--------e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 339 LGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--------EDADELIADFKQGLDAL 395 (404)
T ss_dssp CCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--------SCHHHHHHHHHHHHHHH
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--------CCHHHHHHHHHHHHHHH
Confidence 1 1000 01114689999764 57888888888877643
No 172
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.89 E-value=8.2e-22 Score=194.75 Aligned_cols=342 Identities=17% Similarity=0.186 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHhh-cCeeEecCCC-------CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc
Q 013217 8 VCEIITKEKERQF-KSLELIASEN-------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF 79 (447)
Q Consensus 8 ~~~~~~~e~~~~~-~~i~l~~~~n-------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~ 79 (447)
+..+...-.+..+ +.|+|..+.. ++.+++.+++...+.+....+|+.. .| ..++.+.+.+++.+.+
T Consensus 15 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr~~ia~~~~~~~ 88 (401)
T 7aat_A 15 ILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPI---AG---LADFTRASAELALGEN 88 (401)
T ss_dssp HHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCT---TC---CHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCC---CC---CHHHHHHHHHHhcCCC
Confidence 4454443322222 3578766552 2235788888776653223344432 12 2344434444555444
Q ss_pred CCC--CCccceeeecCCcHHHHHHHHHHh---cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCC
Q 013217 80 NLD--ENKWGVNVQPLSGSPANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-EST 153 (447)
Q Consensus 80 g~~--~~~~~~~v~~~sGs~a~~~~~~al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~ 153 (447)
|.. ++++ +.+++++|++|+..++.++ ++|||+|++.+|.|.++.. .+...|. +++.++++ +++
T Consensus 89 ~~~~~~~~i-~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~ 157 (401)
T 7aat_A 89 SEAFKSGRY-VTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGL--QLQAYRYYDPKT 157 (401)
T ss_dssp CHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEETTT
T ss_pred ccccccCce-EEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHH--------HHHHcCC--eeEeeeeecccc
Confidence 432 4433 1122344458988777665 4999999999998877642 2344554 44555553 246
Q ss_pred CCCCHHHHHHHhhh--hCCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccC--CCC-----
Q 013217 154 GLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADP----- 219 (447)
Q Consensus 154 ~~id~~~l~~~~~~--~~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~----- 219 (447)
+.+|++++++.+++ .++++|+++.++||+ .. ++++|.++|+++|+++++|++|. ++...+.. ..+
T Consensus 158 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~ 236 (401)
T 7aat_A 158 CSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ-GFASGDINRDAWALRHFI 236 (401)
T ss_dssp TEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHHHHTHHHHHHH
T ss_pred CccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccc-cccCCCccccHHHHHHHH
Confidence 78999988877754 267888888888886 34 46788999999999999999963 33322210 000
Q ss_pred -CCcccEEEeCCCccc--CCCCCceEEeecCCcchhh----HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh--c---C
Q 013217 220 -FKYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--Q---S 287 (447)
Q Consensus 220 -~~~~Di~~~s~~K~l--~Gp~gG~i~~~~~~~~~~~----~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~--~---~ 287 (447)
.....+++.|+||++ +|+|.|++++..... + +...+......+.. ++.....++.+.++..- . .
T Consensus 237 ~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 312 (401)
T 7aat_A 237 EQGIDVVLSQSYAKNMGLYGERAGAFTVICRDA---EEAKRVESQLKILIRPMYS-NPPMNGARIASLILNTPELRKEWL 312 (401)
T ss_dssp HTTCCCEEEEECTTTSCCGGGCEEEEEEECSSH---HHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred hcCCcEEEEecCCcccccccCceEEEEEEeCCH---HHHHHHHHHHHHHHHhccC-CCChHHHHHHHHHhCCHHHHHHHH
Confidence 012458899999997 577779988632100 3 22333322111112 22222222222233210 0 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCC
Q 013217 288 PEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALV 363 (447)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~ 363 (447)
...++..+++.++++.+.+.|.+.| +++..+ ..+++.|+++ +.+.+...|+++||.+.
T Consensus 313 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~ll~~~gi~v~------------ 374 (401)
T 7aat_A 313 VEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD-QIGMFCFTGL-----KPEQVERLTKEFSIYMT------------ 374 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEECC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecC-CcceEEecCC-----CHHHHHHHHHhCCEecc------------
Confidence 2245667788888999999998865 444332 2344555543 46677777788999983
Q ss_pred CCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 364 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 364 ~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
+++|+++...++ ++++++++.|++++
T Consensus 375 -~~~Ris~~~~~~-----~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 375 -KDGRISVAGVAS-----SNVGYLAHAIHQVT 400 (401)
T ss_dssp -TTCEEEGGGCCT-----TTHHHHHHHHHHHH
T ss_pred -CCCeEEeccCCh-----hhHHHHHHHHHHHh
Confidence 247998876554 56999999998765
No 173
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.89 E-value=1.4e-21 Score=192.58 Aligned_cols=289 Identities=19% Similarity=0.172 Sum_probs=186.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc
Q 013217 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 140 (447)
Q Consensus 61 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 140 (447)
++...+++ +++++++|.+. .+.++||++|+..++.+++++||+|++..+.|++...... ......|
T Consensus 65 ~~~~~~l~----~~la~~~g~~~-----~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~g- 130 (392)
T 3qhx_A 65 NPTRTALE----AALAAVEDAAF-----GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLID----KVFTGWN- 130 (392)
T ss_dssp CHHHHHHH----HHHHHHTTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HTGGGGT-
T ss_pred ChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHH----HHHHhcC-
Confidence 34445554 68899999873 3456889999999999999999999999999876532110 0112234
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217 141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 218 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~ 218 (447)
++++.++.+ |++++++++++ +|++|++..++|++ ..|+++|+++|+++|+++++|++|+.+.. ..
T Consensus 131 -~~~~~v~~~------d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-----~~ 197 (392)
T 3qhx_A 131 -VEYTPVALA------DLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-----QQ 197 (392)
T ss_dssp -CEEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-----CC
T ss_pred -cEEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-----CC
Confidence 355554432 89999999987 89999998777775 78999999999999999999999865532 12
Q ss_pred CCC-cccEEEeCCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217 219 PFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 294 (447)
Q Consensus 219 ~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~ 294 (447)
++. ++|+++.|+||+++|+ ++|+++++++ ++.+.+....... ..+++....+ .+++.+. .+..++
T Consensus 198 ~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~-----~~~~~l~~~~~~~-g~~~~~~~~~---~~~~~l~--~l~~~~ 266 (392)
T 3qhx_A 198 PLSLGADVVLHSTTKYIGGHSDVVGGALVTNDE-----ELDQSFAFLQNGA-GAVPGPFDAY---LTMRGLK--TLVLRM 266 (392)
T ss_dssp GGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHHH-CCCCCHHHHH---HHHHHHT--THHHHH
T ss_pred hHHhCCcEEEEcCccccCCCCCceEEEEEECcH-----HHHHHHHHHHHhc-CCCCCHHHHH---HHHhhhh--HHHHHH
Confidence 233 5899999999999764 5799998853 5666554422111 1122222222 1223222 245667
Q ss_pred HHHHHHHHHHHHHHHHC-CcEee-eCCCC---------------CeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCC--
Q 013217 295 NKVVSNCRALASRLVEL-GYKLV-SGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASITLNKNSV-- 355 (447)
Q Consensus 295 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~~---------------~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~-- 355 (447)
++..++++.+.+.|++. ++..+ .++-. ..++.+.+.........+...|...+|.++.+..
T Consensus 267 ~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~s 346 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVES 346 (392)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCc
Confidence 88899999999999873 44322 22110 2245556543112344555666666777665321
Q ss_pred ----CCCC---------CCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217 356 ----PGDK---------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391 (447)
Q Consensus 356 ----p~~~---------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i 391 (447)
|... ....++.||+|++..++ +++++.+.++|
T Consensus 347 l~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~----~~~i~~l~~al 391 (392)
T 3qhx_A 347 LIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDV----ADLLDDLKQAL 391 (392)
T ss_dssp EEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCH----HHHHHHHHHHH
T ss_pred eeeCcccccccccCHHHcCCCCCeEEEEeccCCH----HHHHHHHHHHh
Confidence 2110 01235679999887666 67777666654
No 174
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.89 E-value=7.9e-22 Score=194.97 Aligned_cols=288 Identities=17% Similarity=0.117 Sum_probs=188.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccce
Q 013217 62 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY 141 (447)
Q Consensus 62 ~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 141 (447)
+....++ +.+++++|.+. .+.++||++|+..++. +++|||+|++.++.|++++.... ..+...|.
T Consensus 67 p~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~G~- 131 (403)
T 3cog_A 67 PTRNCLE----KAVAALDGAKY-----CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFR----QVASEFGL- 131 (403)
T ss_dssp HHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH----HTGGGGTC-
T ss_pred chHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHH----HHHHHcCC-
Confidence 4455565 67888999862 4556899999999988 89999999999999887532110 01123343
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhC-CEEEEehhhhccccccccCCC
Q 013217 142 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVAD 218 (447)
Q Consensus 142 ~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g-~~livD~a~~~g~~~~~~~~~ 218 (447)
+++.++.+ |++++++++++ +|++|++++++||+ ..|+++|.++|+++| +++++|++|..+... .
T Consensus 132 -~v~~v~~~------d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~-----~ 198 (403)
T 3cog_A 132 -KISFVDCS------KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQ-----R 198 (403)
T ss_dssp -EEEEECTT------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTC-----C
T ss_pred -EEEEECCC------CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccC-----C
Confidence 55554432 89999999987 89999998888775 789999999999999 999999998665421 2
Q ss_pred CCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217 219 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 294 (447)
Q Consensus 219 ~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~ 294 (447)
|+. ++|+++.|+||+++||. +|+++++++ ++.+.+.....+. .++++.....+...+++ .+..+.
T Consensus 199 ~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~-----~l~~~l~~~~~~~-g~~~~~~~~~~~~~~l~-----~l~~r~ 267 (403)
T 3cog_A 199 PLALGADISMYSATKYMNGHSDVVMGLVSVNCE-----SLHNRLRFLQNSL-GAVPSPIDCYLCNRGLK-----TLHVRM 267 (403)
T ss_dssp TTTTTCSEEEEETTTTTTCSSCCCCEEEEECCH-----HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHT-----THHHHH
T ss_pred ccccCCeEEEEcChhhccCCCCCeEEEEEECcH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhhhh-----HHHHHH
Confidence 333 58999999999998775 599998643 6666665432221 12333333222222332 244567
Q ss_pred HHHHHHHHHHHHHHHHCC---------------cEeeeCC--CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEcc---CC
Q 013217 295 NKVVSNCRALASRLVELG---------------YKLVSGG--SDNHLVLVDLRPMGIDGARVEKILDMASITLNK---NS 354 (447)
Q Consensus 295 ~~~~~~~~~l~~~L~~~g---------------~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~---~~ 354 (447)
++..+|+..+.+.|++.. +++..+. ....++.+.+.. ....+.++|.+.||.+.. +.
T Consensus 268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s~G~ 344 (403)
T 3cog_A 268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG---TLQHAEIFLKNLKLFTLAESLGG 344 (403)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS---CHHHHHHHHHHCSSSEECSCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC---CHHHHHHHHHhCCcceEccCCCC
Confidence 778888888888887641 1111100 012334445532 235677888888886542 21
Q ss_pred ------CCCCCC------------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 355 ------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 355 ------~p~~~~------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
.|.... ...++.||++++..++ +++++.+.++|++++
T Consensus 345 ~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~----~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 345 FESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDE----EDLLEDLDQALKAAH 399 (403)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCH----HHHHHHHHHHHHHHC
T ss_pred cceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCH----HHHHHHHHHHHHHhh
Confidence 222110 1225689999988776 888888888776544
No 175
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.88 E-value=9.5e-22 Score=195.03 Aligned_cols=328 Identities=15% Similarity=0.172 Sum_probs=202.1
Q ss_pred hcCeeEecCC----C---CCCHHHHHHHhh-hhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCcccee
Q 013217 20 FKSLELIASE----N---FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVN 89 (447)
Q Consensus 20 ~~~i~l~~~~----n---~~~~~v~~a~~~-~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~ 89 (447)
+..++|..+. + ++++.+.+++.. .+......+|.. .....++++...+++...+|. +++++ +.
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~~i-~~ 101 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG------ITGLPSLTSNAAKIIFGTQSDALQEDRV-IS 101 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EE
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCC------CCCcHHHHHHHHHHHhcCCCCCCCcceE-EE
Confidence 3567876554 2 567999999988 664321223321 111234554434444433342 34432 21
Q ss_pred eecCCcHHHHHHH--HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCCCCCCHHHHHHHhh
Q 013217 90 VQPLSGSPANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAI 166 (447)
Q Consensus 90 v~~~sGs~a~~~~--~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~~~ 166 (447)
+++++|++|+..+ +..+++|||+|++.+|.|.++.. .+...|. +++.+++ +++++.+|+++++++++
T Consensus 102 ~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~ 171 (412)
T 1yaa_A 102 VQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA--------IFENQGL--KTATYPYWANETKSLDLNGFLNAIQ 171 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH--------HHHTTTC--CEEEEECEETTTTEECHHHHHHHHH
T ss_pred EeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHH--------HHHHcCc--eEEEEeeecCCCCccCHHHHHHHHH
Confidence 2245556888877 34556799999999998877532 2234454 4445545 43467899999999997
Q ss_pred hhC-Cc-EEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccc----cCCC-CCC--c----ccEEEe
Q 013217 167 LFR-PK-LIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS----VVAD-PFK--Y----CDVVTT 228 (447)
Q Consensus 167 ~~~-~k-lii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~----~~~~-~~~--~----~Di~~~ 228 (447)
+.+ ++ +++++.++||+ ..+ +++|.++|+++|+++++|++|. ++...+ ..+. .+. + .+++++
T Consensus 172 ~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 250 (412)
T 1yaa_A 172 KAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQ 250 (412)
T ss_dssp HSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSSCHHHHTHHHHHHHHHTTTTCCEEEEE
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCcccchhHHHHHHHhcCCCCcceEEEe
Confidence 632 24 44447778875 443 6688999999999999999973 333221 0000 010 1 357889
Q ss_pred CCCcccC--CCCCceEE--e-----ecCCcchhh----HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-----ChhH
Q 013217 229 TTHKSLR--GPRGGMIF--F-----KKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SPEF 290 (447)
Q Consensus 229 s~~K~l~--Gp~gG~i~--~-----~~~~~~~~~----~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-----~~~~ 290 (447)
|+||+++ |.|.|+++ + ++ + +.+.+....... .++++....+++..+++... ..+.
T Consensus 251 s~sK~~~~~GlriG~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 323 (412)
T 1yaa_A 251 SFAKNAGMYGERVGCFHLALTKQAQNK------TIKPAVTSQLAKIIRSE-VSNPPAYGAKIVAKLLETPELTEQWHKDM 323 (412)
T ss_dssp ECTTTSCCGGGCEEEEEEECCSCTTHH------HHHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccCCCCCCcCCcceEEEEEecCCCCCH------HHHHHHHHHHHHHHhhc-cCCCChHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999874 45569988 6 33 4 555555422222 23445554555555565431 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCe
Q 013217 291 KVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGG 366 (447)
Q Consensus 291 ~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~ 366 (447)
++..+++.++++.+.+.|++.+ +++..+ ..+.+.|+.+ +..++...|+++||.+.. .
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~-------------~ 384 (412)
T 1yaa_A 324 VTMSSRITKMRHALRDHLVKLGTPGNWDHIVN-QCGMFSFTGL-----TPQMVKRLEETHAVYLVA-------------S 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEECCT-------------T
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCeeeecc-CceEEEeeCC-----CHHHHHHHHHhCCEEecc-------------C
Confidence 6777888889999999998855 666543 2244445433 456777777889999842 4
Q ss_pred EEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 367 IRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 367 iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+|+++... + ++|++++.+.|+++++
T Consensus 385 ~Ris~~~~-~----~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 385 GRASIAGL-N----QGNVEYVAKAIDEVVR 409 (412)
T ss_dssp SEEEGGGC-C----TTTHHHHHHHHHHHHH
T ss_pred cEEEEccC-C----HhHHHHHHHHHHHHHH
Confidence 89997642 4 8999999999988875
No 176
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.88 E-value=2.8e-21 Score=197.67 Aligned_cols=338 Identities=13% Similarity=0.127 Sum_probs=203.3
Q ss_pred eeEecCCC-CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc-C-CCCCccceeeecCCcH-HH
Q 013217 23 LELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-N-LDENKWGVNVQPLSGS-PA 98 (447)
Q Consensus 23 i~l~~~~n-~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~-g-~~~~~~~~~v~~~sGs-~a 98 (447)
++|..++. ..++.+.+++...+.. .+|+. .......+++.+.+++.+.+ + ...+.- ..|.+++|+ +|
T Consensus 106 i~l~~g~~~~~~~~~v~a~~~~~~~---~~y~~-----~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~~i~~t~G~t~a 176 (533)
T 3f6t_A 106 VNYCHTELGLNRDKVVAEWVNGAVA---NNYPV-----PDRCLVNTEKIINYFLQELSYKDANLAEQ-TDLFPTEGGTAA 176 (533)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHT---CSCCS-----SSSCCHHHHHHHHHHHHHHHTTTCCCGGG-EEEEEEEHHHHH
T ss_pred eeccCCCCCcCCcHHHHHHHHHHHh---CCCCC-----CcccHHHHHHHHHHHHHHhcCCCCCCCCc-ceEEEECCHHHH
Confidence 44443333 2356666665554432 12221 11122456655556666552 3 222100 134446665 89
Q ss_pred HHHHHHH-----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCCCCHHHHHHHhhhhCCcE
Q 013217 99 NFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKL 172 (447)
Q Consensus 99 ~~~~~~a-----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~id~~~l~~~~~~~~~kl 172 (447)
+..++.+ +++|||+|++.+|.|.++.. .+...|..+..+++..+ .+++.+|+++|++++++ ++++
T Consensus 177 l~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~ 247 (533)
T 3f6t_A 177 IVYAFHSLAENHLLKKGDKIAINEPIFTPYLR--------IPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKA 247 (533)
T ss_dssp HHHHHHHHHHTTSSCTTCEEEEESSCCHHHHT--------SGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT-TEEE
T ss_pred HHHHHHHhhhhhccCCcCEEEEcCCCcHHHHH--------HHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC-CCeE
Confidence 9888888 78999999999999877642 23345554444444321 24578999999999976 8999
Q ss_pred EEEcCCCCCC--CCChH---HHHHHHH-HhCCEEEEehhhhccccccccCCCCC----CcccEEEeCCCccc--CCCCCc
Q 013217 173 IIAGASAYPR--DFDYP---RMRQIAD-AVGALLMMDMAHISGLVAASVVADPF----KYCDVVTTTTHKSL--RGPRGG 240 (447)
Q Consensus 173 ii~~~~~~~~--~~~~~---~i~~ia~-~~g~~livD~a~~~g~~~~~~~~~~~----~~~Di~~~s~~K~l--~Gp~gG 240 (447)
|+++.++||+ ..+.+ +|.++|+ ++|+++|+|++|. ++.... .++ +..++++.|+||++ .|.|.|
T Consensus 248 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~-~~~~~~---~~~~~~~~~~~i~~~S~SK~~g~~G~RiG 323 (533)
T 3f6t_A 248 LIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYG-AFVPNF---KSIYSVVPYNTMLVYSYSKLFGCTGWRLG 323 (533)
T ss_dssp EEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTG-GGSTTC---CCHHHHSGGGEEEEEESHHHHTCGGGCEE
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcc-ccccCc---cCHhhcCCCCEEEEecCcccCCCcccceE
Confidence 9988778875 55655 8888888 5899999999975 443321 111 13459999999987 477789
Q ss_pred eEEeecCCcchhhHHHHhhh-----------------------------------ccCCCCCCCCcHHHHHHHHH-HHHH
Q 013217 241 MIFFKKDPVLGVELESAINN-----------------------------------AVFPGLQGGPHNHTIGGLAV-CLKH 284 (447)
Q Consensus 241 ~i~~~~~~~~~~~~~~~i~~-----------------------------------~~~~~~~g~p~~~~~aal~~-al~~ 284 (447)
+++++++ ...+++.. .......++++....++++. ++..
T Consensus 324 ~l~~~~~-----~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~ 398 (533)
T 3f6t_A 324 VIALNEK-----NVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTH 398 (533)
T ss_dssp EEEEESS-----CHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHH
T ss_pred EEEECcH-----HHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Confidence 9999874 22221110 01111223334333333211 2222
Q ss_pred h--------cChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC-----C----------CCH-HHHH
Q 013217 285 A--------QSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-----G----------IDG-ARVE 340 (447)
Q Consensus 285 ~--------~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~-----~----------~~~-~~~~ 340 (447)
+ .....++..+.+.++++.|.+.|. .++.+..+ ...++.|+++... + .+. +.+.
T Consensus 399 L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~-~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~ 476 (533)
T 3f6t_A 399 LLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDT-NTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLL 476 (533)
T ss_dssp HTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTT-BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCC-CceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHH
Confidence 2 223346677778888889999886 66654332 3345567766420 1 233 3445
Q ss_pred HHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 341 KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 341 ~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+.++++||.+..+..++. ..+.+|+++... ++++++++++.|.+++...
T Consensus 477 ~ll~~~GV~v~pg~~f~~----~~~~iRls~a~~-----~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 477 KLAEKNGVVLVDGVGFGA----KPGELRVSQANL-----PTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp HHHHHTTSSSCTTEEECS----STTEEEEESSSS-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEeCCcccCC----CCCEEEEEEeeC-----CHHHHHHHHHHHHHHHHHH
Confidence 666789999855432221 246899997533 3889999999999998765
No 177
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.6e-21 Score=193.25 Aligned_cols=289 Identities=18% Similarity=0.170 Sum_probs=183.8
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217 60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 139 (447)
Q Consensus 60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 139 (447)
+++....++ +++++++|.+. .+.++||++|+..++.++++|||+|++.++.|++...... ......|
T Consensus 79 ~~p~~~~l~----~~la~~~g~~~-----~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~g 145 (414)
T 3ndn_A 79 GNPTVSVFE----ERLRLIEGAPA-----AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCS----EILPRWG 145 (414)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHH----HHHHHcC
Confidence 345556665 68888999753 3556899999999999999999999999998877532110 0011234
Q ss_pred ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217 140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 217 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~ 217 (447)
. +++.++.+ |++++++++++ +|++|++++++||+ ..|+++|+++|+++|+++++|++|+.|...
T Consensus 146 ~--~~~~v~~~------d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~----- 211 (414)
T 3ndn_A 146 V--QTVFVDGD------DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQ----- 211 (414)
T ss_dssp C--EEEEECTT------CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC-----
T ss_pred c--EEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence 3 45554432 89999999987 89999999888775 789999999999999999999998766432
Q ss_pred CCCC-cccEEEeCCCcccCC---CCCceEEeecCCcchhhHHH-HhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHH
Q 013217 218 DPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 292 (447)
Q Consensus 218 ~~~~-~~Di~~~s~~K~l~G---p~gG~i~~~~~~~~~~~~~~-~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~ 292 (447)
.++. ++|+++.|+||+++| +++|++++++ +... .+...... ..++++... + +.+++.+ ..+..
T Consensus 212 ~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~------~~~~~~l~~~~~~-~g~~~~~~~-a--~~~~~~l--~~l~~ 279 (414)
T 3ndn_A 212 QGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDR------EYIDGPVQKLMRH-TGPAMSAFN-A--WVLLKGL--ETLAI 279 (414)
T ss_dssp CCGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHTTHHHHHHHH-HCCCCCHHH-H--HHHHHHG--GGHHH
T ss_pred CchhcCCCeEeccCCccccCCCCceEEEEEECH------HHHHHHHHHHHHH-cCCCCCHHH-H--HHHHHHH--HHHHH
Confidence 2333 589999999999966 4579999987 4333 34321110 011222221 1 2233333 24567
Q ss_pred HHHHHHHHHHHHHHHHHH-CCcEee-eCCC---------------CCeeEEecCCCC----CCCHHHHHHHHhhcCeEEc
Q 013217 293 YQNKVVSNCRALASRLVE-LGYKLV-SGGS---------------DNHLVLVDLRPM----GIDGARVEKILDMASITLN 351 (447)
Q Consensus 293 ~~~~~~~~~~~l~~~L~~-~g~~~~-~~~~---------------~~~~~~v~~~~~----~~~~~~~~~~L~~~gI~v~ 351 (447)
+++++.++++.+.+.|++ +++..+ .++- ...++++.+... ......+.+.|...++.++
T Consensus 280 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s 359 (414)
T 3ndn_A 280 RVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNN 359 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCC
Confidence 788899999999999987 344332 2211 123556666431 1123445555555666665
Q ss_pred cCCC------CCCC------------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 352 KNSV------PGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 352 ~~~~------p~~~------------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
.+.. |... ....++.||++... |+.+.+.+.|++++
T Consensus 360 ~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--------e~~~dli~dl~~al 413 (414)
T 3ndn_A 360 LGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--------EDTDDLIADIDRAL 413 (414)
T ss_dssp CSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--------SCHHHHHHHHHHHH
T ss_pred CCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--------CCHHHHHHHHHHhh
Confidence 4321 1110 01234579998763 45556666665554
No 178
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.88 E-value=9.1e-21 Score=189.57 Aligned_cols=312 Identities=14% Similarity=0.084 Sum_probs=198.0
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 107 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---- 107 (447)
.+|.|.+++.+.+.+. . +.... + ..+...+++ +++++++|.+. .+.++||++|+..++.++.
T Consensus 93 ~~p~v~~Ai~~~~~~~-~--~~~~~-~-~~~~~~~l~----~~la~~~g~~~-----v~~~~sGseA~~~al~~~~~~~~ 158 (439)
T 2oat_A 93 CHPKIVNALKSQVDKL-T--LTSRA-F-YNNVLGEYE----EYITKLFNYHK-----VLPMNTGVEAGETACKLARKWGY 158 (439)
T ss_dssp TCHHHHHHHHHHHTTC-S--CCCTT-S-EESSHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-C--cccCc-c-CCHHHHHHH----HHHHHhcCCCE-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 5799999998877542 1 11111 2 123334444 57777887542 2345778899999888764
Q ss_pred -----CCC-CEEEEecCCCCcccCCCccccccccccccc----------eeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 013217 108 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLVDYDMLEKTAILFRPK 171 (447)
Q Consensus 108 -----~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k 171 (447)
.|| |+|++.++.|.+.... .+...+. ...++.++. .|+++|+++++..+++
T Consensus 159 ~~~g~~~g~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~ 225 (439)
T 2oat_A 159 TVKGIQKYKAKIVFAAGNFWGRTLS-------AISSSTDPTSYDGFGPFMPGFDIIPY------NDLPALERALQDPNVA 225 (439)
T ss_dssp HTTCCCTTCCEEEEETTCCCCSSHH-------HHTTCCCHHHHTTSCSCCTTEEEECS------SCHHHHHHHTTSTTEE
T ss_pred hccCCCCCCCeEEEEcCCCCCCCHh-------HhhcCCChhcccCCCCCCCCeEEeCC------CCHHHHHHHhCCCCEE
Confidence 467 8999998876554210 0111110 011222222 3899999999533778
Q ss_pred EEEEcCCCCC-C-CC----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC--CCCc
Q 013217 172 LIIAGASAYP-R-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGG 240 (447)
Q Consensus 172 lii~~~~~~~-~-~~----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G--p~gG 240 (447)
+|++++.+++ + .. ++++|.++|++||+++|+|++| .|+...+.. . ...+ ..|++ |++|+|+| .++|
T Consensus 226 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G 302 (439)
T 2oat_A 226 AFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVS 302 (439)
T ss_dssp EEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCE
T ss_pred EEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCcchhHHHhCCCCcEE--EecccccCCCCCeE
Confidence 8888754332 3 33 6899999999999999999998 564332211 0 0111 35877 55699865 4789
Q ss_pred eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeeeC-C
Q 013217 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-G 319 (447)
Q Consensus 241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~ 319 (447)
++++++ ++.+.+......+.. +.+....++..++++.+..+ ++.+++.++.+++.+.|++.+++++.. .
T Consensus 303 ~v~~~~------~~~~~l~~~~~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~ 372 (439)
T 2oat_A 303 AVLCDD------DIMLTIKPGEHGSTY-GGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLPSDVVTAVR 372 (439)
T ss_dssp EEEECH------HHHTTSCTTSSCCSS-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSCTTTEEEEE
T ss_pred EEEECH------HHHhccCCCCcccCC-CcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999987 676666543222222 23445555555577765432 356778888999999998765543211 0
Q ss_pred CCCeeEEecCCCCC-CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 320 SDNHLVLVDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 320 ~~~~~~~v~~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
....++++++.... .+..++.+.|.++||.+.. . ..+.+|++++..++ ++|++++++.|++++.
T Consensus 373 ~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~----~-----~~~~iRi~~~~~~t----~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 373 GKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKP----T-----HGDIIRFAPPLVIK----EDELRESIEIINKTIL 437 (439)
T ss_dssp EETTEEEEEECCCSSCCHHHHHHHHHHTTEECCB----S-----SSSEEEECCCTTCC----HHHHHHHHHHHHHHHH
T ss_pred eeeeEEEEEEecCccHHHHHHHHHHHHCCeEEec----C-----CCCEEEEECccCCC----HHHHHHHHHHHHHHHH
Confidence 12345566664321 3567888888889999853 1 24589999877666 9999999999998875
No 179
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.88 E-value=3.4e-21 Score=189.95 Aligned_cols=313 Identities=15% Similarity=0.102 Sum_probs=199.0
Q ss_pred CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--C
Q 013217 31 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K 108 (447)
Q Consensus 31 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~ 108 (447)
+.++.+.+++...+... . +.... | ..+...+ .++++++++|++++.+ +.+++|++|+..++.++. .
T Consensus 61 ~~~~~v~~a~~~~~~~~-~--~~~~~-~-~~~~~~~----l~~~la~~~~~~~~~v---~~~~gg~~a~~~al~~~~~~~ 128 (395)
T 1vef_A 61 HGNPEVVEAVKRQAETL-M--AMPQT-L-PTPMRGE----FYRTLTAILPPELNRV---FPVNSGTEANEAALKFARAHT 128 (395)
T ss_dssp BTCHHHHHHHHHHHHHC-C--CCCTT-S-CCHHHHH----HHHHHHHTSCTTEEEE---EEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-C--CCccc-c-CCHHHHH----HHHHHHHhcCCCcCEE---EEcCcHHHHHHHHHHHHHHHh
Confidence 36899999998887642 1 11111 2 1222333 4468889998765422 334566799998888764 6
Q ss_pred CCCEEEEecCCCCcccCCCccccccccccccceeE---EEecccCCCC---CCCCHHHHHHHhhhhCCcEEEEcCCCCC-
Q 013217 109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE---SMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASAYP- 181 (447)
Q Consensus 109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~---~~id~~~l~~~~~~~~~klii~~~~~~~- 181 (447)
+||+|++.++.|.+.... .+...|.... ..+ +..+. ...|+++|++++++ ++++|++++++++
T Consensus 129 ~~~~vi~~~~~y~~~~~~-------~~~~~g~~~~~~~~~p--~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t 198 (395)
T 1vef_A 129 GRKKFVAAMRGFSGRTMG-------SLSVTWEPKYREPFLP--LVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEG 198 (395)
T ss_dssp SCCEEEEETTCCCCSSHH-------HHHTCCCHHHHGGGCS--CSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTT
T ss_pred CCCeEEEEcCCcCCCchh-------hhhhcCCcccccccCC--CCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCC
Confidence 899999998876543211 1112222100 001 11000 02589999999986 8899988765443
Q ss_pred C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C-cccEEEeCCCcccCC-CCCceEEeecCCcch
Q 013217 182 R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLG 251 (447)
Q Consensus 182 ~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~~~ 251 (447)
+ ..+ +++|.++|+++|+++++|++|+ |+...+. ..++ + ..|++ |+||++++ ++.|++++++
T Consensus 199 G~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~-~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~----- 269 (395)
T 1vef_A 199 GVRPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGK-RFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMRE----- 269 (395)
T ss_dssp TSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSS-SSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEH-----
T ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCc-hhHhhhcCCCCCEE--EEcccccCCCceEEEEehH-----
Confidence 4 557 9999999999999999999986 5432221 1111 1 36777 56899865 4569999988
Q ss_pred hhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCcEeee-CCCCCeeEEecCC
Q 013217 252 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GGSDNHLVLVDLR 330 (447)
Q Consensus 252 ~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~v~~~ 330 (447)
++.+.+...... ...+++....++...+++.+.. .++.+++.++++++.+.|++.+.+++. ......++++++.
T Consensus 270 -~~~~~l~~~~~~-~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~ 344 (395)
T 1vef_A 270 -EVARSMPKGGHG-TTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELK 344 (395)
T ss_dssp -HHHHTSCTTSSC-CSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEES
T ss_pred -HHHhhhccCCcC-CCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEc
Confidence 676666542111 1223455555556667765532 345677888899999999886542211 0112345677765
Q ss_pred CCCCCHHHHHHHHh-hcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 331 PMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 331 ~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
. +..++.+.|. ++||.+... ..+.+|++++..++ ++|++++++.|++++
T Consensus 345 ~---~~~~l~~~l~~~~gi~v~~~---------~~~~iRi~~~~~~~----~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 345 E---KAAPYIARLEKEHRVLALQA---------GPTVIRFLPPLVIE----KEDLERVVEAVRAVL 394 (395)
T ss_dssp S---CSHHHHHHHHHHHCEECEES---------STTEEEECCCTTCC----HHHHHHHHHHHHHHH
T ss_pred C---hHHHHHHHHHHHCCeEEecC---------CCCEEEEeCCCCCC----HHHHHHHHHHHHHHh
Confidence 3 2567888887 899998642 14589999876666 999999999998765
No 180
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.88 E-value=6.7e-22 Score=196.74 Aligned_cols=341 Identities=16% Similarity=0.169 Sum_probs=205.7
Q ss_pred HHHHHHHHHHH-hhcCeeEecC---CC----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc
Q 013217 8 VCEIITKEKER-QFKSLELIAS---EN----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF 79 (447)
Q Consensus 8 ~~~~~~~e~~~-~~~~i~l~~~---~n----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~ 79 (447)
++.+...-.+. ..+.|+|..+ ++ ++++.|++++...+......+|+.. ....++.+...+++....
T Consensus 36 i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~------~g~~~lr~~ia~~l~~~~ 109 (420)
T 4f4e_A 36 ILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPI------DGIAAYDASVQKLLLGDD 109 (420)
T ss_dssp HHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCT------TCCHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCC------CCcHHHHHHHHHHhcCCC
Confidence 55555543332 2356888776 22 2348999999887765222344332 112344433334444333
Q ss_pred CC--CCCccceeeecCCcH-HHHHHH--HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCC
Q 013217 80 NL--DENKWGVNVQPLSGS-PANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DEST 153 (447)
Q Consensus 80 g~--~~~~~~~~v~~~sGs-~a~~~~--~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~ 153 (447)
+. +++.+ +|.+++|+ +|+..+ +.++++|||+|++.+|.|.++.. .+...|. +++.+++ ++++
T Consensus 110 ~~~~~~~~~--~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~ 177 (420)
T 4f4e_A 110 SPLIAAGRV--VTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRA--------LFDMAGF--EVVAYPYYDAKT 177 (420)
T ss_dssp CHHHHTTCE--EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHTTC--CEEEEECEETTT
T ss_pred ccccccCce--EEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH--------HHHHcCC--eEEEeeeecccc
Confidence 21 23310 23335554 898888 55778999999999998876532 2334554 4445445 3356
Q ss_pred CCCCHHHHHHHhhh--hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCC------
Q 013217 154 GLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP------ 219 (447)
Q Consensus 154 ~~id~~~l~~~~~~--~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~------ 219 (447)
+.+|++++++.+++ .++++++++.++||+ ..+ +++|.++|+++|+++++|+++ .++...+. ...+
T Consensus 178 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~ 256 (420)
T 4f4e_A 178 NGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAY-QGFGESIEADAAAVRLFAA 256 (420)
T ss_dssp TEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTSSSCTTGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccc-ccccCCcchhhHHHHHHHh
Confidence 78999999999974 267888888888876 433 678899999999999999996 44443310 0000
Q ss_pred CCcccEEEeCCCcccC--CCCCceEEeecCCcchhhHHHH----hhhccCCCCCCCCcHHHHHHHHHHHHHhc-----Ch
Q 013217 220 FKYCDVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESA----INNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SP 288 (447)
Q Consensus 220 ~~~~Di~~~s~~K~l~--Gp~gG~i~~~~~~~~~~~~~~~----i~~~~~~~~~g~p~~~~~aal~~al~~~~-----~~ 288 (447)
....++++.|+||+++ |.|.|+++...... ++.+. +......... +++....++.+.++.... ..
T Consensus 257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~ 332 (420)
T 4f4e_A 257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSK---DEAARVLSQLKRVIRTNYS-NPPTHGGAIVAAVLASPELRASWVQ 332 (420)
T ss_dssp TTCCEEEEEECTTTTTCGGGCEEEEEEECSSH---HHHHHHHHHHHHHHHTTTS-SCCSHHHHHHHHHHHCHHHHHHHHH
T ss_pred cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCH---HHHHHHHHHHHHHHhcccC-CCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 1124688999999974 77779986421100 33332 2221112222 223333333333333210 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHC----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCC
Q 013217 289 EFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVP 364 (447)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~ 364 (447)
..++..+++.++++.+.+.|++. |+.+..+ ....+.|+.+ +.+.+.+.|.++||.+..
T Consensus 333 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~~l~~~gI~v~~------------ 394 (420)
T 4f4e_A 333 ELGEMRDRIRAMRNGLVERLKAAGIERDFSFINA-QRGMFSYSGL-----TSAQVDRLREEFGIYAVS------------ 394 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH-SCSSEEECCC-----CHHHHHHHHHHHCEECCT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECC-CccEEEEeCC-----CHHHHHHHHHhCCEEecC------------
Confidence 34667788889999999999885 6655443 2344555543 457788889999999842
Q ss_pred CeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 365 ~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
+.|+++..++ +++++++++.|++++
T Consensus 395 -~~Ris~~~~~-----~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 395 -TGRICVAALN-----TRNLDVVANAIAAVL 419 (420)
T ss_dssp -TSEEEGGGCC-----TTTHHHHHHHHHHHH
T ss_pred -CCeEEEecCC-----HHHHHHHHHHHHHHh
Confidence 2388875433 577999999998775
No 181
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.88 E-value=2.8e-20 Score=185.67 Aligned_cols=313 Identities=12% Similarity=0.074 Sum_probs=192.9
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 107 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---- 107 (447)
.+|.|.+++...+.+. . +.... + ..+...+++ +++++++|.+. .+.++||++|+..++..+.
T Consensus 82 ~~p~v~~ai~~~~~~~-~--~~~~~-~-~~~~~~~l~----~~la~~~g~~~-----v~~~~sGseA~~~al~~a~~~~~ 147 (433)
T 1z7d_A 82 CHPNILNAMINQAKNL-T--ICSRA-F-FSVPLGICE----RYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY 147 (433)
T ss_dssp TCHHHHHHHHHHHTTC-S--CCCTT-S-EEHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-C--CccCC-c-CCHHHHHHH----HHHHhhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 5799999998877542 1 11111 2 223333443 57788888542 2445778899999887753
Q ss_pred -----CCC-CEEEEecCCCCcccCCCccccccccccccce----------eEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 013217 108 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGLVDYDMLEKTAILFRPK 171 (447)
Q Consensus 108 -----~pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~id~~~l~~~~~~~~~k 171 (447)
.|| |+|++.++.|.+..... +...+.. ..++.++. .|+++|+++++..+++
T Consensus 148 ~~~g~~~gr~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~ 214 (433)
T 1z7d_A 148 EVKKIPENMAKIVVCKNNFSGRTLGC-------ISASTTKKCTSNFGPFAPQFSKVPY------DDLEALEEELKDPNVC 214 (433)
T ss_dssp HTSCCCTTCCEEEEETTC---------------------------------CEEEECT------TCHHHHHHHHTSTTEE
T ss_pred hccCCCCCCCeEEEEeCCcCCcchhh-------hcccCCccccccCCCCCCCeEEeCC------CCHHHHHHHhCCCCEE
Confidence 478 99999998775542111 1122210 11222221 3899999999433788
Q ss_pred EEEEcCCCC-CC-CC----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC--CCCc
Q 013217 172 LIIAGASAY-PR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGG 240 (447)
Q Consensus 172 lii~~~~~~-~~-~~----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G--p~gG 240 (447)
+|++++.++ ++ .. ++++|.++|+++|+++|+|++|. |+...+.. . ...+ ..|++ |++|+++| .++|
T Consensus 215 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G 291 (433)
T 1z7d_A 215 AFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPIS 291 (433)
T ss_dssp EEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCE
T ss_pred EEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeE
Confidence 888875433 23 33 68999999999999999999984 64332211 0 1111 36877 45699864 4789
Q ss_pred eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeC
Q 013217 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG 318 (447)
Q Consensus 241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~ 318 (447)
++++++ ++.+.+......+.. +.+....++..++++.+... ++.+++.++.+++.+.|++. ++..+..
T Consensus 292 ~v~~~~------~~~~~l~~~~~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~ 361 (433)
T 1z7d_A 292 AVLAND------DIMLVIKPGEHGSTY-GGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRD 361 (433)
T ss_dssp EEEECH------HHHTTCCTTCCCCTT-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred EEEECH------HHHhhhccccccccC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 999987 676666543222222 33455555555577765432 35677788888888888763 5432210
Q ss_pred -CCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 319 -GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 319 -~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
.....++++++.....+..++.+.|.++||.+... ..+.+|++++..++ ++|++++++.|+++++.
T Consensus 362 ~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~---------~~~~iRi~~~~~~t----~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 362 VRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV---------HDKTIRLTPPLCIT----KEQLDECTEIIVKTVKF 428 (433)
T ss_dssp EEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE---------TTTEEEECCCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred EEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC---------CCCEEEEECCcCCC----HHHHHHHHHHHHHHHHH
Confidence 01234566676532135678888888899998532 14589999887666 99999999999988764
No 182
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.87 E-value=1.4e-20 Score=185.03 Aligned_cols=282 Identities=17% Similarity=0.122 Sum_probs=186.1
Q ss_pred HHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC
Q 013217 72 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 151 (447)
Q Consensus 72 ~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 151 (447)
++.+++++|.+ + .+.++||++|+..++.+++++||+|++..+.|++.+.... ......|. +++.++.
T Consensus 58 ~~~la~~~~~~-~----~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~-- 124 (386)
T 1cs1_A 58 QRALAELEGGA-G----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD----SLAKRGCY--RVLFVDQ-- 124 (386)
T ss_dssp HHHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HHHTTTSC--EEEEECT--
T ss_pred HHHHHHHhCCC-c----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHH----HHHHhcCC--EEEEeCC--
Confidence 36788899987 2 3445899999999999999999999999998876432100 00122343 4444333
Q ss_pred CCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEe
Q 013217 152 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT 228 (447)
Q Consensus 152 ~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~ 228 (447)
.|++++++++++ ++++|+++.++|++ ..|+++|.++|+++|+++++|++|..+.... ++. ++|++++
T Consensus 125 ----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-----~~~~~~di~~~ 194 (386)
T 1cs1_A 125 ----GDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN-----PLALGADLVLH 194 (386)
T ss_dssp ----TCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-----GGGGTCSEEEE
T ss_pred ----CCHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-----ccccCceEEEE
Confidence 289999999987 89999998777774 7799999999999999999999987664321 222 4799999
Q ss_pred CCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013217 229 TTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305 (447)
Q Consensus 229 s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~ 305 (447)
|+||+++||. ||+++++++ ++.+.+....... .++++....++...+++ .+.++.++..++++.+.
T Consensus 195 s~sK~~~~~~~~~~G~~~~~~~-----~l~~~l~~~~~~~-~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~ 263 (386)
T 1cs1_A 195 SCTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNI-GVTGGAFDSYLLLRGLR-----TLVPRMELAQRNAQAIV 263 (386)
T ss_dssp ETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHH-TCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHH
T ss_pred cCcccccCCCCceeEEEEeCcH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhccc-----HHHHHHHHHHHHHHHHH
Confidence 9999987665 399998763 4666655432221 12334333222222222 24556777888889999
Q ss_pred HHHHHCC-cEee-eCC---------------CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCC---------CCCC-
Q 013217 306 SRLVELG-YKLV-SGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS---------VPGD- 358 (447)
Q Consensus 306 ~~L~~~g-~~~~-~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~---------~p~~- 358 (447)
+.|.+.+ +.-. .+. ....++.+.+.. ....+.+.|.+.||.++... .|..
T Consensus 264 ~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~ 340 (386)
T 1cs1_A 264 KYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG---DEQTLRRFLGGLSLFTLAESLGGVESLISHAATM 340 (386)
T ss_dssp HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---CHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGT
T ss_pred HHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC---CHHHHHHHHHhCCcceEcccCCCcceeeeccccc
Confidence 8887742 3211 110 013344445432 25678888989999886311 0100
Q ss_pred --C--C-------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 359 --K--S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 359 --~--~-------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
. + ...++.+|++++..++ +++++.+.++|+++
T Consensus 341 ~~~~~~~~~~~~~g~~~~~iRis~~~~~~----~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 341 THAGMAPEARAAAGISETLLRISTGIEDG----EDLIADLENGFRAA 383 (386)
T ss_dssp TTTTSCHHHHHHHTCCTTEEEEECCSSCH----HHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHhcCCCCCeEEEEEccCCH----HHHHHHHHHHHHHh
Confidence 0 0 1124689999988766 88988888887654
No 183
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.87 E-value=6.7e-20 Score=182.75 Aligned_cols=325 Identities=14% Similarity=0.047 Sum_probs=200.6
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---C
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---K 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---~ 108 (447)
.+|.|++++...+.... +++..+| . .+...++ +++++++++.+++++ +..++|++|+..++.++. +
T Consensus 60 ~~p~v~~a~~~~~~~~~--~~~~~~~-~-~~~~~~l----~~~la~~~~~~~~~v---~~~~ggtea~~~ai~~~~~~~~ 128 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMS--HVMFGGI-T-HAPAIEL----CRKLVAMTPQPLECV---FLADSGSVAVEVAMKMALQYWQ 128 (429)
T ss_dssp SCHHHHHHHHHHHHHCS--CCCCSSE-E-CHHHHHH----HHHHHHHSCTTCCEE---EEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--ccccccc-C-CHHHHHH----HHHHHHhCCCCCCEE---EEeCCHHHHHHHHHHHHHHHhc
Confidence 47999999988876532 1211111 1 1222223 357888998766532 334566799998887653 2
Q ss_pred ----CCCEEEEecCCCCcccCCCccc------cccccccccceeEEEecccC---CCCCCCCHHHHHHHhhh--hCCcEE
Q 013217 109 ----PHDRIMGLDLPHGGHLSHGFMT------PKRRVSGTSIYFESMPYRLD---ESTGLVDYDMLEKTAIL--FRPKLI 173 (447)
Q Consensus 109 ----pgd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~---~~~~~id~~~l~~~~~~--~~~kli 173 (447)
|||+|++.++.|.+........ ..............++++.. ...+.+|+++|++++++ .++++|
T Consensus 129 ~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 208 (429)
T 1s0a_A 129 AKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAV 208 (429)
T ss_dssp HHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEE
T ss_pred ccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEE
Confidence 7999999998765532100000 00000000011244443321 01235899999999874 256777
Q ss_pred EEcCC-CCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC--CCCce
Q 013217 174 IAGAS-AYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGGM 241 (447)
Q Consensus 174 i~~~~-~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G--p~gG~ 241 (447)
++++. +++ + ..+ +++|.++|++||+++|+|++|. |+...+.. . .... ..|++++ +|+|+| .+.|+
T Consensus 209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~g~~g~~~~~~~~~~~~d~~t~--sK~l~~G~~~iG~ 285 (429)
T 1s0a_A 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSA 285 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEE
T ss_pred EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCcccchHHHhhhcCCCCCEEEe--cccccCCCccceE
Confidence 77765 554 3 455 8999999999999999999985 33211110 0 0011 3577755 499876 46699
Q ss_pred EEeecCCcchhhHHHHhhhcc----CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----Cc
Q 013217 242 IFFKKDPVLGVELESAINNAV----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GY 313 (447)
Q Consensus 242 i~~~~~~~~~~~~~~~i~~~~----~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~ 313 (447)
+++++ ++.+.+.... ..+...+++...+++..++++.+... ++.+++.++++++.+.|++. ++
T Consensus 286 ~~~~~------~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~ 356 (429)
T 1s0a_A 286 TLTTR------EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMV 356 (429)
T ss_dssp EEECH------HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTE
T ss_pred EEeCH------HHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99887 6777665421 01112234566666666788766543 34677778888999998773 34
Q ss_pred EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHH
Q 013217 314 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~ 393 (447)
..+.+ ...++++++.. ..+..++.+.|.++||.++.. .+.+|++++..++ ++|++++++.|++
T Consensus 357 ~~~~~--~g~~~~~~~~~-~~~~~~l~~~l~~~Gi~v~~~----------~~~iRis~~~~~t----~e~i~~~~~~l~~ 419 (429)
T 1s0a_A 357 ADVRV--LGAIGVVETTH-PVNMAALQKFFVEQGVWIRPF----------GKLIYLMPPYIIL----PQQLQRLTAAVNR 419 (429)
T ss_dssp EEEEE--ETTEEEEEESS-CBCHHHHHHHHHHTTEECCCB----------TTEEEECCCTTCC----HHHHHHHHHHHHH
T ss_pred EEEEE--eeEEEEEEECC-cccHHHHHHHHHHCCCEEecc----------CCEEEEECCCCCC----HHHHHHHHHHHHH
Confidence 32222 23356777653 245677888888899998531 2589999887777 9999999999988
Q ss_pred HHH
Q 013217 394 GVE 396 (447)
Q Consensus 394 ~l~ 396 (447)
++.
T Consensus 420 ~~~ 422 (429)
T 1s0a_A 420 AVQ 422 (429)
T ss_dssp HTS
T ss_pred HHH
Confidence 765
No 184
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.87 E-value=1.6e-21 Score=193.76 Aligned_cols=225 Identities=17% Similarity=0.115 Sum_probs=150.8
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217 60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 139 (447)
Q Consensus 60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 139 (447)
+++..+.+| +++++++|.+. .+.++||++|+..++.++++|||+|++.++.|++...... ..+...|
T Consensus 80 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G 146 (430)
T 3ri6_A 80 SNPTVEDLE----QRLKNLTGALG-----VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQ----KTLPSFG 146 (430)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----THHHHTT
T ss_pred CCHHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcC
Confidence 445566776 67889999864 3456899999999999999999999999998877542110 0122334
Q ss_pred ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCC
Q 013217 140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 217 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~ 217 (447)
. +++.++.+ |++++++++++ +|++|+++.++||+ ..|+++|.++|+++|+++++|++|+.+.. .
T Consensus 147 ~--~~~~v~~~------d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-----~ 212 (430)
T 3ri6_A 147 I--EVRFVDVM------DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-----L 212 (430)
T ss_dssp C--EEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-----C
T ss_pred C--EEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 3 55554332 89999999987 89999998887775 78999999999999999999999876643 2
Q ss_pred CCCC-cccEEEeCCCcccCCC---CCceEEeecCCcc-----hhh---------HHHHhhhccCCCCCCCCcHHHHHHHH
Q 013217 218 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVL-----GVE---------LESAINNAVFPGLQGGPHNHTIGGLA 279 (447)
Q Consensus 218 ~~~~-~~Di~~~s~~K~l~Gp---~gG~i~~~~~~~~-----~~~---------~~~~i~~~~~~~~~g~p~~~~~aal~ 279 (447)
.|.. ++|+++.|++|+|+|+ .||+++.+..... +.. +..++.........+.+.. ..+.
T Consensus 213 ~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~-~~a~-- 289 (430)
T 3ri6_A 213 EAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSP-HNAY-- 289 (430)
T ss_dssp CGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCH-HHHH--
T ss_pred ChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCH-HHHH--
Confidence 2333 5899999999999887 6788886543110 001 1121111100001112222 1221
Q ss_pred HHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-CCcEee
Q 013217 280 VCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLV 316 (447)
Q Consensus 280 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~ 316 (447)
.+++.+ ..+..++++..+|++.+++.|++ ++++.+
T Consensus 290 l~l~~l--~~l~~r~~~~~~na~~la~~L~~~p~v~~V 325 (430)
T 3ri6_A 290 LQSLGL--ETMALRIERSCQNAQELAHWLLSIPQVKCV 325 (430)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred HHHhhh--hhHHHHHHHHHHHHHHHHHHHhCCCCccEE
Confidence 223322 23566788889999999999987 466533
No 185
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.87 E-value=3.9e-21 Score=189.41 Aligned_cols=284 Identities=13% Similarity=0.097 Sum_probs=179.6
Q ss_pred HHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217 71 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 150 (447)
Q Consensus 71 ~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 150 (447)
.++.+++++|.+. .+.++||++|+..++. +++|||+|++..+.|++.+.... ..+...|. +++.++++
T Consensus 60 lr~~la~~~g~~~-----~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~G~--~v~~v~~~ 127 (393)
T 1n8p_A 60 LERAVAALENAQY-----GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFT----KVANAHGV--ETSFTNDL 127 (393)
T ss_dssp HHHHHHHHTTCSE-----EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHH----HTSTTTCS--CCEEESSH
T ss_pred HHHHHHHHhCCCc-----EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHH----HHHHHcCc--EEEEeCCC
Confidence 3468899999872 3456899999999999 99999999999998876432100 01123343 33443332
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHh----CCEEEEehhhhccccccccCCCCCC-cc
Q 013217 151 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFK-YC 223 (447)
Q Consensus 151 ~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~----g~~livD~a~~~g~~~~~~~~~~~~-~~ 223 (447)
| +++++++++ +|++|++.+++|++ ..|+++|.++|+++ |+++++|++|+.+... .++. ++
T Consensus 128 ------d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~~~~~~ 194 (393)
T 1n8p_A 128 ------L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NPLNFGA 194 (393)
T ss_dssp ------H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CGGGGTC
T ss_pred ------h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CHHHcCC
Confidence 7 899998876 89999998777775 78999999999999 9999999999766432 1222 48
Q ss_pred cEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 013217 224 DVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300 (447)
Q Consensus 224 Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~ 300 (447)
|++++|+||+++++. ||+++++++ ++.+.+....... .++++....++...+++ .+....++..++
T Consensus 195 di~~~S~sK~~g~~G~rigG~~~~~~~-----~~~~~l~~~~~~~-g~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~ 263 (393)
T 1n8p_A 195 DIVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQFLQNAI-GAIPSPFDAWLTHRGLK-----TLHLRVRQAALS 263 (393)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHT-----THHHHHHHHHHH
T ss_pred eEEEEECcccccCCCCceeEEEEeCCH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhccc-----hHHHHHHHHHHH
Confidence 999999999986543 399988642 5666655432111 11223222222222222 245667788889
Q ss_pred HHHHHHHHHHCC--cE-eeeCC--------------C--C-CeeEEecCCCCCCCHHHHHHHHhhcCeEEccC------C
Q 013217 301 CRALASRLVELG--YK-LVSGG--------------S--D-NHLVLVDLRPMGIDGARVEKILDMASITLNKN------S 354 (447)
Q Consensus 301 ~~~l~~~L~~~g--~~-~~~~~--------------~--~-~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~------~ 354 (447)
++.+.+.|.+.+ +. +..++ . . ..++.+.+.....+...+...|...++.++.+ .
T Consensus 264 ~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~ 343 (393)
T 1n8p_A 264 ANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLE 343 (393)
T ss_dssp HHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEE
T ss_pred HHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcceee
Confidence 999999987743 32 21111 0 1 33455555421012233334444445555433 1
Q ss_pred CCCCCC------------CCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 355 VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 355 ~p~~~~------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
.|.... ....+.||+|++..++ +++++.+.++|+++
T Consensus 344 ~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~----~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 344 VPAVMTHGGIPKEAREASGVFDDLVRISVGIEDT----DDLLEDIKQALKQA 391 (393)
T ss_dssp CTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCH----HHHHHHHHHHHHHH
T ss_pred ccccccccccCHHHHHhcCCCCCeEEEEEccCCH----HHHHHHHHHHHHHh
Confidence 222110 1124689999999888 99999999888754
No 186
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.87 E-value=2e-21 Score=195.94 Aligned_cols=326 Identities=17% Similarity=0.172 Sum_probs=195.2
Q ss_pred HHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCC----
Q 013217 34 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP---- 109 (447)
Q Consensus 34 ~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~p---- 109 (447)
+.|.+++...+.. |. ..|+......+++ +++++++|.+. .+.++||++|+..++.+++++
T Consensus 53 ~~v~~a~~~~l~~----~~---~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~~gt~A~~~al~~~~~~~~~~ 116 (467)
T 2oqx_A 53 GAVTQSMQAAMMR----GD---EAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQE 116 (467)
T ss_dssp SCCCHHHHHHTTS----CC---CCSSSCHHHHHHH----HHHHHHHCCSE-----EEEEC--CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----Cc---ceeccCchhHHHH----HHHHHHhCcCc-----EEEcCCcHHHHHHHHHHHhcccccc
Confidence 7777777666532 11 1233344445555 57888888753 234567789999999998888
Q ss_pred -C----CEEEEecCCCCcccCCCccccccccccccceeE----EEecccC---CCCCCCCHHHHHHHhhh---hCCcEEE
Q 013217 110 -H----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE----SMPYRLD---ESTGLVDYDMLEKTAIL---FRPKLII 174 (447)
Q Consensus 110 -g----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~---~~~~~id~~~l~~~~~~---~~~klii 174 (447)
| |+|++. ..|+..+.. .....+.... ...++.+ +.++.+|+++|++++++ .++++|+
T Consensus 117 ~G~~~~d~Ii~~-~~h~~t~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi 188 (467)
T 2oqx_A 117 KGLDRSKMVAFS-NYFFDTTQG-------HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIV 188 (467)
T ss_dssp HCCCTTTCEEEE-SSCCHHHHH-------HHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEE
T ss_pred CCCCccceEEec-ccccccchh-------hhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEE
Confidence 8 997765 444221000 0001111100 0011111 13467899999999985 3789999
Q ss_pred EcCCCCC--C-CC---ChHHHHHHHHHhCCEEEEehhhhc-ccc--------ccccCCCCC-----CcccEEEeCCCccc
Q 013217 175 AGASAYP--R-DF---DYPRMRQIADAVGALLMMDMAHIS-GLV--------AASVVADPF-----KYCDVVTTTTHKSL 234 (447)
Q Consensus 175 ~~~~~~~--~-~~---~~~~i~~ia~~~g~~livD~a~~~-g~~--------~~~~~~~~~-----~~~Di~~~s~~K~l 234 (447)
+++++|+ + .. ++++|+++|++||+++|+|++|+. +.. ..+.....+ .++|++++|+||++
T Consensus 189 ~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~ 268 (467)
T 2oqx_A 189 ATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDA 268 (467)
T ss_dssp EESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTT
T ss_pred EeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEeccccc
Confidence 9877665 3 33 478999999999999999988766 321 122111011 23688899999999
Q ss_pred CCCCCceEEeecCCcchhh-HH---HHhhhcc--CCC--CCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Q 013217 235 RGPRGGMIFFKKDPVLGVE-LE---SAINNAV--FPG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS 306 (447)
Q Consensus 235 ~Gp~gG~i~~~~~~~~~~~-~~---~~i~~~~--~~~--~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~ 306 (447)
+.|.||++++++ + +. .++.... ..+ ..++.....++++..+++.... ++..++..++++.+.+
T Consensus 269 g~~~Gg~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~~l~~ 339 (467)
T 2oqx_A 269 MVPMGGLLCMKD------DSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVD 339 (467)
T ss_dssp CCSSCEEEEECS------GGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEecC------hhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHH
Confidence 777688888876 4 22 3332211 111 1233333444444444343322 1235556788899999
Q ss_pred HHHHCCcEeeeCCCCCeeEEecCCC--CCCC-----HHHHHHHH-hhcCeEEccCCC------C--CCCCCCCCCeEEEe
Q 013217 307 RLVELGYKLVSGGSDNHLVLVDLRP--MGID-----GARVEKIL-DMASITLNKNSV------P--GDKSALVPGGIRIG 370 (447)
Q Consensus 307 ~L~~~g~~~~~~~~~~~~~~v~~~~--~~~~-----~~~~~~~L-~~~gI~v~~~~~------p--~~~~~~~~~~iRig 370 (447)
.|.+.|+++. + ...+++++++.. .+.+ ...+.+.| .++||.+..... | +...+...+.+|++
T Consensus 340 ~L~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~ 417 (467)
T 2oqx_A 340 GLEEIGVVCQ-Q-AGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLT 417 (467)
T ss_dssp HHHHTTCCEE-E-ECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEC
T ss_pred HHHHCCCeee-c-CCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEE
Confidence 9988888766 3 335566777631 1223 33457777 889999865211 1 00011123689999
Q ss_pred cCcc-ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 371 SPAM-TTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 371 ~~~~-~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
++.. ++ ++|++++++.|++++...
T Consensus 418 ~~~~~~t----~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 418 IPRATYT----QTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp CCTTTSC----HHHHHHHHHHHHHHHHSG
T ss_pred ecCCCCC----HHHHHHHHHHHHHHHhhh
Confidence 8876 66 999999999999988753
No 187
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.87 E-value=3.6e-21 Score=190.78 Aligned_cols=328 Identities=16% Similarity=0.129 Sum_probs=200.3
Q ss_pred hcCeeEecCCC-------CCCHHHHHHHhhhhhcc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCcccee
Q 013217 20 FKSLELIASEN-------FTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVN 89 (447)
Q Consensus 20 ~~~i~l~~~~n-------~~~~~v~~a~~~~~~~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~ 89 (447)
+..++|..+.. ++++.+.+++...+... ...+|.. .....++++...+++...+|. +++++ +.
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~lr~~la~~~~~~~~~~~~~~~v-~~ 102 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP------ILGLAEFRTCASRLALGDDSPALQEKRV-GG 102 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EE
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCC------CCCCHHHHHHHHHHHhcCCCCccCCCcE-EE
Confidence 35678876651 45689999988766221 1122321 111234543333333222222 34432 21
Q ss_pred eecCCcHHHHHHHH--HHhcCCC-----CEEEEecCCCCcccCCCccccccccccccceeE-EEecccCC-CCCCCCHHH
Q 013217 90 VQPLSGSPANFEVY--TAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-SMPYRLDE-STGLVDYDM 160 (447)
Q Consensus 90 v~~~sGs~a~~~~~--~al~~pg-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~-~~~~id~~~ 160 (447)
+++++|++|+..++ .++++|| |+|++.+|.|.++.. .+...|. + ++.+++++ +++.+|+++
T Consensus 103 ~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------VFTTAGF--KDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------HHHHTTC--SCEEEEECEETTTTEECHHH
T ss_pred EECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHH--------HHHHcCC--ceeEEEeeecCCCCccCHHH
Confidence 22455668998885 3557899 999999998877532 2234454 3 44444421 457899999
Q ss_pred HHHHhhhh--CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccc---cC-C-CCC---CcccE
Q 013217 161 LEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS---VV-A-DPF---KYCDV 225 (447)
Q Consensus 161 l~~~~~~~--~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~---~~-~-~~~---~~~Di 225 (447)
+++++++. ++++|+++.++||+ ..+ +++|.++|+++|+++|+|++|. ++...+ .. + ..+ ...++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~i 251 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQ-GFASGNLEKDAWAIRYFVSEGFELF 251 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TTTTSCHHHHTHHHHHHHHTTCCEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccc-cccCCcccccchHHHHHhccCCcEE
Confidence 99998764 45677778788875 433 5689999999999999999963 333221 00 0 001 11248
Q ss_pred EEeCCCcccC--CCCCceEEe---ecCCcchhh----HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-----ChhHH
Q 013217 226 VTTTTHKSLR--GPRGGMIFF---KKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SPEFK 291 (447)
Q Consensus 226 ~~~s~~K~l~--Gp~gG~i~~---~~~~~~~~~----~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~-----~~~~~ 291 (447)
++.|+||+++ |.|.|++++ ++ + +.+.+...... ..++++....++...+++... ....+
T Consensus 252 ~~~s~sK~~~~~G~riG~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 324 (412)
T 1ajs_A 252 CAQSFSKNFGLYNERVGNLTVVAKEP------DSILRVLSQMQKIVRV-TWSNPPAQGARIVARTLSDPELFHEWTGNVK 324 (412)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECSSH------HHHHHHHHHHHHHHHT-TTSSCCSHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEecccccCCCCcceEEEEEecCCH------HHHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHcCcchhHHHHHHHH
Confidence 8999999874 555699998 54 4 33333331111 123334444445555665431 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeE
Q 013217 292 VYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGI 367 (447)
Q Consensus 292 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~i 367 (447)
+..+++.++++.+.+.|.+.+ +++..+ ..+.+.|+.+ +...+...|.++||.+.. ++
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~-------------~~ 385 (412)
T 1ajs_A 325 TMADRILSMRSELRARLEALKTPGTWNHITD-QIGMFSFTGL-----NPKQVEYLINQKHIYLLP-------------SG 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH-CCSSEEECCC-----CHHHHHHHHHTTCEECCT-------------TS
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC-CCceEEEeCC-----CHHHHHHHHHhCCEEecC-------------Cc
Confidence 777888899999999998865 665443 2244455543 356677788899999842 37
Q ss_pred EEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 368 RIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 368 Rig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
|+++... + +++++++++.|+++++
T Consensus 386 Ris~~~~-~----~~~i~~~~~~l~~~l~ 409 (412)
T 1ajs_A 386 RINMCGL-T----TKNLDYVATSIHEAVT 409 (412)
T ss_dssp EEEGGGC-C----TTTHHHHHHHHHHHHH
T ss_pred EEEeeeC-C----HHHHHHHHHHHHHHHH
Confidence 9987632 4 7899999999988875
No 188
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.86 E-value=1.5e-20 Score=185.93 Aligned_cols=312 Identities=17% Similarity=0.095 Sum_probs=200.8
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--- 108 (447)
.+|.+.+++.+.+...+ .+ +.. + ..+...++ ++++++++|.+. .+.+++|++|+..++.+++.
T Consensus 56 ~~p~v~~a~~~~~~~~~--~~-~~~-~-~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~~a~~~al~~~~~~~~ 121 (406)
T 4adb_A 56 AHPELREALNEQASKFW--HT-GNG-Y-TNEPVLRL----AKKLIDATFADR-----VFFCNSGAEANEAALKLARKFAH 121 (406)
T ss_dssp TCHHHHHHHHHHHTTCS--CC-CTT-S-CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--cc-cCC-c-CCHHHHHH----HHHHHhhCCCCe-----EEEeCcHHHHHHHHHHHHHHHHH
Confidence 37999999988775421 11 111 1 22333334 468889998762 23456777999999988764
Q ss_pred ----CC-CEEEEecCCCCcccCCCccccccccccccc----------eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217 109 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 173 (447)
Q Consensus 109 ----pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~id~~~l~~~~~~~~~kli 173 (447)
+| |+|++.++.|.+..... ....+. ...+..++ ..|+++|++++++ ++++|
T Consensus 122 ~~~~~g~~~vi~~~~~y~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v 187 (406)
T 4adb_A 122 DRYGSHKSGIVAFKNAFHGRTLFT-------VSAGGQPAYSQDFAPLPADIRHAA------YNDINSASALIDD-STCAV 187 (406)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHHH-------HHHSSCGGGTGGGCSCCSSEEEEC------TTCHHHHHTTCST-TEEEE
T ss_pred hcCCCCCcEEEEECCCcCCCcHHH-------hhccCCccccccCCCCCCCceEeC------CCcHHHHHHHhcC-CeEEE
Confidence 66 99999998876653110 011110 00111111 1489999999875 89999
Q ss_pred EEcCCCCCC--CC-----ChHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCceE
Q 013217 174 IAGASAYPR--DF-----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMI 242 (447)
Q Consensus 174 i~~~~~~~~--~~-----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~i 242 (447)
+++ |+||+ .. ++++|.++|++||+++|+|++|+ |+...+... ...+ ..|++++ ||+++ |.|+|++
T Consensus 188 ~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~ 263 (406)
T 4adb_A 188 IVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLLTT--AKALGGGFPVGAL 263 (406)
T ss_dssp EEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEE
T ss_pred EEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEEEe--chhhcCCCCeEEE
Confidence 998 56653 32 57899999999999999999985 543322110 0001 2577754 89985 5578999
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCCc--EeeeC-C
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY--KLVSG-G 319 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~-~ 319 (447)
++++ ++.+.+......+.. +++....++...+++.+.. +++.+++.++++++.+.|++.+. ..... .
T Consensus 264 ~~~~------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 333 (406)
T 4adb_A 264 LATE------ECARVMTVGTHGTTY-GGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR 333 (406)
T ss_dssp EECH------HHHHTCCTTSSCCSS-TTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred EEcH------HHHhhhccCCcCCCC-CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 9888 777776654332222 3455555566667776543 45677888888899888876321 11111 0
Q ss_pred CCCeeEEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 320 SDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 320 ~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
....++++.+... ..+..++.+.|.++||.+... ..+.+|++++..++ ++|++++++.|+++++..
T Consensus 334 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~---------~~~~iRi~~~~~~~----~e~i~~~~~~l~~~l~~~ 400 (406)
T 4adb_A 334 GLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIA---------GGNVVRFAPALNVS----EEEVTTGLDRFAAACEHF 400 (406)
T ss_dssp EETTEEEEEECTTTTTCHHHHHHHHHHTTEECEES---------STTEEEECCCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeec---------CCCeEEEECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence 1233455655431 125678888898899998642 14689998877776 999999999999988754
No 189
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.86 E-value=7.2e-21 Score=187.57 Aligned_cols=327 Identities=15% Similarity=0.134 Sum_probs=195.6
Q ss_pred cCeeEecCC---C----CCCHHHHHHHhh-hhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CCCccceee
Q 013217 21 KSLELIASE---N----FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV 90 (447)
Q Consensus 21 ~~i~l~~~~---n----~~~~~v~~a~~~-~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~~~~~~~v 90 (447)
+.|+|..+. + ++++.|++++.. .+.+....+|+.. .| ..++.+...+++....+. +++.+ +|
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~---~g---~~~lr~~la~~~~~~~~~~~~~~~~--~i 98 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPM---EG---LNCYRHAIAPLLFGADHPVLKQQRV--AT 98 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCT---TC---CHHHHHHHHHHHHCTTCHHHHTTCE--EE
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCC---Cc---hHHHHHHHHHHHhcCCcccccccce--EE
Confidence 458887662 2 234899999988 7654222344332 11 233443333344333221 33310 23
Q ss_pred ecCCcH-HHHHHH--HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCCCCCHHHHHHHhh
Q 013217 91 QPLSGS-PANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAI 166 (447)
Q Consensus 91 ~~~sGs-~a~~~~--~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~id~~~l~~~~~ 166 (447)
.+++|+ +|+..+ +.++++|||+|++..|.|.++.. .+...|. +++.+++. ++++.+|++++++.++
T Consensus 99 ~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~ 168 (397)
T 3fsl_A 99 IQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA--------IFAGAGF--EVSTYPWYDEATNGVRFNDLLATLK 168 (397)
T ss_dssp EEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHH--------HHHHTTC--CEEEECCEETTTTEECHHHHHHHHT
T ss_pred EEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHH--------HHHHcCC--ceEEEeeeeccCCcCcHHHHHHHHH
Confidence 335554 888888 45678999999999988876531 2334454 44454452 2467899999999997
Q ss_pred hh--CCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccc-cCCCC------CCcccEEEeCCCc
Q 013217 167 LF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADP------FKYCDVVTTTTHK 232 (447)
Q Consensus 167 ~~--~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~-~~~~~------~~~~Di~~~s~~K 232 (447)
++ ++++++++.++||+ .. ++++|.++|+++|+++++|++|. ++...+ ....+ .....+++.|++|
T Consensus 169 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 169 TLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ-GFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp TCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred hCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCch-hhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence 42 56788888778775 44 45699999999999999999974 333221 00000 0124588899999
Q ss_pred ccC--CCCCceEEeecCCcchhhHHHHhh----hccCCCCCCCCcHHHHHHHHHHHHHh-----cChhHHHHHHHHHHHH
Q 013217 233 SLR--GPRGGMIFFKKDPVLGVELESAIN----NAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNC 301 (447)
Q Consensus 233 ~l~--Gp~gG~i~~~~~~~~~~~~~~~i~----~~~~~~~~g~p~~~~~aal~~al~~~-----~~~~~~~~~~~~~~~~ 301 (447)
+++ |.|.|+++...... +..+.+. ...... .++++....++++.++... .....++..+++.+++
T Consensus 248 ~~~~~G~riG~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDA---EAAGRVLGQLKATVRRN-YSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp TTTCGGGCCEEEEEECSSH---HHHHHHHHHHHHHHHTT-TSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCH---HHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 874 77779987632100 3333221 111111 2233333333333333311 0123466778888999
Q ss_pred HHHHHHHHHC----CcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217 302 RALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 377 (447)
Q Consensus 302 ~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~ 377 (447)
+.+.+.|.+. |+.+..+ ....+.|+++ +.+.+.+.|+++||.+.. + + |+++...+
T Consensus 324 ~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~----g--------~-Ris~~~~~-- 382 (397)
T 3fsl_A 324 QELVKVLSTEMPERNFDYLLN-QRGMFSYTGL-----SAAQVDRLREEFGVYLIA----S--------G-RMCVAGLN-- 382 (397)
T ss_dssp HHHHHHHHHHCTTSCCTHHHH-CCSSEEECCC-----CHHHHHHHHHTTCEECCT----T--------C-EEEGGGCC--
T ss_pred HHHHHHHHhcCCCCCceeecC-CceEEEecCC-----CHHHHHHHHHhCCEEECC----C--------C-eEEEEecC--
Confidence 9999999885 6665543 2244555554 457788889999999842 2 1 88875433
Q ss_pred CCCHHHHHHHHHHHHHH
Q 013217 378 GFSEKEFVAIADFIHEG 394 (447)
Q Consensus 378 g~~~~di~~l~~~i~~~ 394 (447)
+++++++++.|+++
T Consensus 383 ---~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 383 ---TANVQRVAKAFAAV 396 (397)
T ss_dssp ---TTTHHHHHHHHHHH
T ss_pred ---HhhHHHHHHHHHhh
Confidence 57799999998765
No 190
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.86 E-value=3e-20 Score=186.37 Aligned_cols=328 Identities=17% Similarity=0.176 Sum_probs=195.6
Q ss_pred CeeEecCCC-------CCCHHHHHHHhhhhh--ccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH-cCCC-----CCcc
Q 013217 22 SLELIASEN-------FTSRAVMEAVGSCLT--NKYSEGLPGKRYYGGNEYIDELETLCQKRALAA-FNLD-----ENKW 86 (447)
Q Consensus 22 ~i~l~~~~n-------~~~~~v~~a~~~~~~--~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~-~g~~-----~~~~ 86 (447)
.|+|-.+.. ++.+++.+++..... .....+|+.. .| ..++. +.++++ +|.+ ++++
T Consensus 51 ~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~---~G---~~~lr----~~ia~~l~g~~~~~~~~~~i 120 (448)
T 3meb_A 51 KVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPV---AG---FPLFL----EAAQFLMFGKDSKAAQEGRI 120 (448)
T ss_dssp CEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCT---TC---CHHHH----HHHHHHHHCTTCHHHHTTCE
T ss_pred eEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCC---cc---hHHHH----HHHHHHhcCCCccccCcCcE
Confidence 477754332 356888888665541 1122233322 12 23343 334444 3776 3443
Q ss_pred ceeeecCCcHHHHHH--HHHHhcCCCCEEEEecCCCCcccCCCccccccccc----cccceeEEEeccc-CCC-CCCCCH
Q 013217 87 GVNVQPLSGSPANFE--VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS----GTSIYFESMPYRL-DES-TGLVDY 158 (447)
Q Consensus 87 ~~~v~~~sGs~a~~~--~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~-~~~-~~~id~ 158 (447)
+.+++++|++|+.. .+.+++.|||+|++.+|.|.++.. .+. ..|. +++.+++ +++ ++.+|+
T Consensus 121 -~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~~~~~G~--~v~~~~~~~~~~~~~~d~ 189 (448)
T 3meb_A 121 -ASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYG--------IYDKVFNKLKV--PYKEYTYLRKDGELEIDF 189 (448)
T ss_dssp -EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHH--------HHHHHHCTTTS--CCEEECCBCTTSCSSBCH
T ss_pred -EEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHH--------HHHhhHHhCCC--eEEEEeccccccCCCcCH
Confidence 33445666788866 566778999999999999877642 233 4454 4555556 544 588999
Q ss_pred HHHHHHhhh--hCCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC--CCCC------Ccc
Q 013217 159 DMLEKTAIL--FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPF------KYC 223 (447)
Q Consensus 159 ~~l~~~~~~--~~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~~~------~~~ 223 (447)
+++++.+++ .++++++++.++||+ ..+ +++|+++|+++|+++++|+++ .++...+.. ..++ ...
T Consensus 190 e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay-~~~~~~~~~~~~~~~~~~~~~~~~ 268 (448)
T 3meb_A 190 SNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAY-QGFATGSFEADAFAVRMFVDAGVE 268 (448)
T ss_dssp HHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTTSSSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccc-ccccCCCcccCchhHHHHhhcCCc
Confidence 999999975 246777778788886 445 566999999999999999996 343333210 0001 113
Q ss_pred cEEEeCCCccc--CCCCCceE--Ee--------ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-----
Q 013217 224 DVVTTTTHKSL--RGPRGGMI--FF--------KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ----- 286 (447)
Q Consensus 224 Di~~~s~~K~l--~Gp~gG~i--~~--------~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~----- 286 (447)
.+++.|+||++ .|.|.|++ ++ .++ ....++.+.+....... .++++.....+.+.++....
T Consensus 269 ~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~ 346 (448)
T 3meb_A 269 VLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNK-ALSAAMVSGMTLQIRKT-WSMSAIHGAYIVQVIVHDKRLLQMF 346 (448)
T ss_dssp EEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHH-HHHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHTSHHHHHHH
T ss_pred EEEEecccccCCCccccceeeeeeeccccccccCCH-HHHHHHHHHHHHHHhcc-cCCccHHHHHHHHHHhcChHHHHHH
Confidence 47789999987 46777987 55 331 00001333333222222 22344444333333433210
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHCCc---------EeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC
Q 013217 287 SPEFKVYQNKVVSNCRALASRLVELGY---------KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~~L~~~g~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~ 357 (447)
....++..+++.++++.+.+.|.+.|+ .+..+ ....+.|+++ +.+.+..+|+++||.+.. |
T Consensus 347 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~ll~~~gV~v~~----G 416 (448)
T 3meb_A 347 YDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT-AIGMFTFTGL-----TPEHVDYLKEKWSIYLVK----A 416 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEEECS----G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCC-CceEEEecCC-----CHHHHHHHHHhCCEEEeC----C
Confidence 022466678888899999999988643 22222 2234455444 356666777889999943 2
Q ss_pred CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 358 ~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
. .||++..++ +++++++++.|+++++
T Consensus 417 ~--------gRis~a~~~-----~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 417 G--------GRMSMCGLT-----ESNCDYVAEAIHDAVT 442 (448)
T ss_dssp G--------GEEEGGGCC-----TTTHHHHHHHHHHHHH
T ss_pred C--------cEEEEecCC-----HHHHHHHHHHHHHHHH
Confidence 1 388875434 5679999999999886
No 191
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.86 E-value=1.8e-20 Score=184.93 Aligned_cols=308 Identities=14% Similarity=0.094 Sum_probs=197.1
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--- 108 (447)
.+|.+.+++.+.+.+ +. +.+.. | ..+...++ ++++++++|.+. .+.+++|++|+..++.++..
T Consensus 57 ~~~~v~~a~~~~~~~-~~--~~~~~-~-~~~~~~~l----~~~la~~~g~~~-----v~~~~gg~~a~~~al~~~~~~~~ 122 (397)
T 2ord_A 57 SHPRLVEAIKDQAEK-LI--HCSNL-F-WNRPQMEL----AELLSKNTFGGK-----VFFANTGTEANEAAIKIARKYGK 122 (397)
T ss_dssp TCHHHHHHHHHHHHH-CS--CCCTT-S-EEHHHHHH----HHHHHHTTTSCE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cc--cCccc-c-CCHHHHHH----HHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 479999999888764 22 21111 2 22333444 467888888532 23456778999998888753
Q ss_pred ---C-CCEEEEecCCCCcccCCCccccccccccccce-----e-----EEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 013217 109 ---P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLII 174 (447)
Q Consensus 109 ---p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~id~~~l~~~~~~~~~klii 174 (447)
| +|+|++.++.+.+.... .+...|.. + .++.++. .|+++|++++++ ++++|+
T Consensus 123 ~~~~~~~~vi~~~~~yh~~~~~-------~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~l~~-~~~~v~ 188 (397)
T 2ord_A 123 KKSEKKYRILSAHNSFHGRTLG-------SLTATGQPKYQKPFEPLVPGFEYFEF------NNVEDLRRKMSE-DVCAVF 188 (397)
T ss_dssp HHCTTCCEEEEEBTCCCCSSHH-------HHHHSBCHHHHGGGCSCCTTEEEECT------TCHHHHHHHCCT-TEEEEE
T ss_pred cCCCCCceEEEEcCCcCCCchh-------hhhccCChhhccccCCCCCCeeEecC------CCHHHHHHHhhc-CeEEEE
Confidence 5 47899888776443210 11222221 0 0222222 389999999986 899999
Q ss_pred EcCCCCCC-C-----CChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC---C-cccEEEeCCCcccC-CCCCceEE
Q 013217 175 AGASAYPR-D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLR-GPRGGMIF 243 (447)
Q Consensus 175 ~~~~~~~~-~-----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~---~-~~Di~~~s~~K~l~-Gp~gG~i~ 243 (447)
+++++||+ . .++++|.++|+++|+++++|++|. |+...+. ..++ + ..|++ |++|+++ |.|.|+++
T Consensus 189 ~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~-~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~ 264 (397)
T 2ord_A 189 LEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGK-LFAYQKYGVVPDVL--TTAKGLGGGVPIGAVI 264 (397)
T ss_dssp ECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSS-SSHHHHHTCCCSEE--EECGGGGTTSCCEEEE
T ss_pred EecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCcc-chhhhhhCCCCCee--eeccccCCCcCeEEEE
Confidence 98777774 3 368999999999999999999985 6543321 1111 1 25777 4479986 45679999
Q ss_pred eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeeeC-CC
Q 013217 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG-GS 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~-~~ 320 (447)
+++ ++. .+....... ..+++....++...+++.+.. ++..+++.++++++.+.|++. +++++.. ..
T Consensus 265 ~~~------~~~-~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 333 (397)
T 2ord_A 265 VNE------RAN-VLEPGDHGT-TFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG 333 (397)
T ss_dssp ECS------TTC-CCCTTSSCC-SSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred Ech------Hhc-ccCCCCcCC-CCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE
Confidence 887 443 443211111 223455555666667776553 345677888888888888764 3432210 01
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 321 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
...++++++.. ..+..++.+.|.++||.+..+ .++.+|++++..++ ++|++++++.|+++++
T Consensus 334 ~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~---------~~~~iRis~~~~~~----~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 334 MGLMIGIQFRE-EVSNREVATKCFENKLLVVPA---------GNNTIRFLPPLTVE----YGEIDLAVETLKKVLQ 395 (397)
T ss_dssp ETTEEEEEECT-TSCHHHHHHHHHHTTEECEEE---------TTTEEEECCCTTCC----HHHHHHHHHHHHHHHH
T ss_pred EeEEEEEEECC-hHHHHHHHHHHHHCCCEEccC---------CCCEEEEECCcCCC----HHHHHHHHHHHHHHHh
Confidence 23455666643 235778888888899998542 14589999876666 9999999999988765
No 192
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.86 E-value=3e-21 Score=190.25 Aligned_cols=330 Identities=15% Similarity=0.141 Sum_probs=196.7
Q ss_pred hcCeeEecCC---C----CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceee
Q 013217 20 FKSLELIASE---N----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNV 90 (447)
Q Consensus 20 ~~~i~l~~~~---n----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v 90 (447)
+..|+|..+. + +.++.+.+++...+.+....+|.. .....++++...+++.+..+ ++++++ +.+
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr~~la~~~~~~~~~~~~~~~v-~~~ 98 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLG------IDGIPEFGRCTQELLFGKGSALINDKRA-RTA 98 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EEE
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCC------CCCCHHHHHHHHHHHhcCCCCccccccE-EEE
Confidence 3567887665 1 456999999987765321223321 11123444333333322212 124432 111
Q ss_pred ecCCcHHHHHHHHHHh--cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhh
Q 013217 91 QPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL 167 (447)
Q Consensus 91 ~~~sGs~a~~~~~~al--~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~ 167 (447)
++++|++|+..++.++ +.|||+|++.+|.|.++.. .+...|. +++.+++++ +++.+|++++++.+++
T Consensus 99 ~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~ 168 (396)
T 2q7w_A 99 QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS--------VFNSAGL--EVREYAYYDAENHTLDFDALINSLNE 168 (396)
T ss_dssp EESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECEETTTTEECHHHHHHHHTT
T ss_pred ecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHH--------HHHHcCC--ceEEEecccCCCCCcCHHHHHHHHHh
Confidence 2455668998888665 4799999999998877532 2334454 444544532 3578999999999875
Q ss_pred h--CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccc--cC-C-CCC---CcccEEEeCCCcc
Q 013217 168 F--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS--VV-A-DPF---KYCDVVTTTTHKS 233 (447)
Q Consensus 168 ~--~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~--~~-~-~~~---~~~Di~~~s~~K~ 233 (447)
. ++++++++.++||+ ..+ +++|.++|+++|+++++|++|.. +...+ .. + ..+ ...++++.|+||+
T Consensus 169 ~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 247 (396)
T 2q7w_A 169 AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQG-FARGLEEDAEGLRAFAAMHKELIVASSYSXN 247 (396)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT-SSSCHHHHTHHHHHHHHHCSCEEEEEECTTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEeccccc-ccCCccchhHHHHHHHhcCCcEEEEEecccc
Confidence 3 35677778888875 443 56899999999999999999743 32211 00 0 001 1235889999998
Q ss_pred cC--CCCCceEEe---ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHh-----cChhHHHHHHHHHHHHHH
Q 013217 234 LR--GPRGGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNCRA 303 (447)
Q Consensus 234 l~--Gp~gG~i~~---~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~-----~~~~~~~~~~~~~~~~~~ 303 (447)
++ |.|.|++++ +++ ...++.+.+...... ..++++....++...+++.. .....++..+++.++++.
T Consensus 248 ~~~~G~riG~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 324 (396)
T 2q7w_A 248 FGLYNERVGACTLVAADSE--TVDRAFSQMKAAIRA-NYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQL 324 (396)
T ss_dssp TTCGGGCCEEEEEECSSHH--HHHHHHHHHHHHHHT-TTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHH
T ss_pred ccccccccceEEEEcCCHH--HHHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 74 667799986 331 000233333321111 12334554444444454321 012345667778888999
Q ss_pred HHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCC
Q 013217 304 LASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF 379 (447)
Q Consensus 304 l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~ 379 (447)
+.+.|.+.| +++..+ ..+.+.|+.+ +...+...|+++||.+.. ++|++++.. +
T Consensus 325 l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~-------------~~Ris~~~~-~--- 381 (396)
T 2q7w_A 325 FVNTLQEKGANRDFSFIIK-QNGMFSFSGL-----TKEQVLRLREEFGVYAVA-------------SGRVNVAGM-T--- 381 (396)
T ss_dssp HHHHHHHTTCCSCCTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEECCT-------------TCEEEGGGC-C---
T ss_pred HHHHHHhcCCCCCcceecC-CCceEEEecC-----CHHHHHHHHHhcCeeecC-------------CceEEEeec-C---
Confidence 999998866 655433 2244455544 346677888899999842 479997643 4
Q ss_pred CHHHHHHHHHHHHHH
Q 013217 380 SEKEFVAIADFIHEG 394 (447)
Q Consensus 380 ~~~di~~l~~~i~~~ 394 (447)
++|++++++.|+++
T Consensus 382 -~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 382 -PDNMAPLCEAIVAV 395 (396)
T ss_dssp -TTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhc
Confidence 78999999988765
No 193
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.86 E-value=2.2e-20 Score=185.71 Aligned_cols=311 Identities=14% Similarity=0.118 Sum_probs=196.8
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--- 108 (447)
.+|.+.+++.+.+.. +. +.... + ..+...++ ++++++++|.+. .+.++||++|+..++.++..
T Consensus 74 ~~p~v~~ai~~~~~~-~~--~~~~~-~-~~~~~~~l----~~~la~~~g~~~-----v~~~~ggteA~~~al~~~~~~~~ 139 (420)
T 2pb2_A 74 CHPALVEALKSQGET-LW--HTSNV-F-TNEPALRL----GRKLIDATFAER-----VLFMNSGTEANETAFKLARHYAC 139 (420)
T ss_dssp TCHHHHHHHHHHHTT-CC--CCCTT-S-CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cc--cccCc-c-CCHHHHHH----HHHHHhhCCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 479999999887754 22 11111 2 22333333 467888888542 23456778999999988765
Q ss_pred ----CC-CEEEEecCCCCcccCCCccccccccccccce-----e-----EEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 013217 109 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLI 173 (447)
Q Consensus 109 ----pg-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~id~~~l~~~~~~~~~kli 173 (447)
+| ++|++.++.|.+.... .+...|.. + .+..++ ..|+++|++++++ ++++|
T Consensus 140 ~~~~~g~~~vi~~~~~yh~~~~~-------~~~~~g~~~~~~~~~p~~~~~~~~~------~~d~~~le~~i~~-~~~~v 205 (420)
T 2pb2_A 140 VRHSPFKTKIIAFHNAFHGRSLF-------TVSVGGQPKYSDGFGPKPADIIHVP------FNDLHAVKAVMDD-HTCAV 205 (420)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHH-------HHHHSSCHHHHTTSSSCCSCEEEEC------TTCHHHHHHHCCT-TEEEE
T ss_pred hccCCCCCEEEEEeCCcCCcCHH-------HHHhcCCccccccCCCCCCCeEEec------CCCHHHHHHHhcc-CceEE
Confidence 77 4999998877554211 01112210 0 112211 1389999999986 89999
Q ss_pred EEcCCCCCC-C-----CChHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCceEE
Q 013217 174 IAGASAYPR-D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIF 243 (447)
Q Consensus 174 i~~~~~~~~-~-----~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~i~ 243 (447)
+++++++++ . .++++|.++|+++|+++|+|++| .|+...+... ...+ ..|+++ ++|+++ |.+.|+++
T Consensus 206 i~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~-~g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~~ 282 (420)
T 2pb2_A 206 VVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQ-CGMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAML 282 (420)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEE
T ss_pred EEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCC-cCcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEEE
Confidence 998655543 2 35789999999999999999998 5654333110 0011 358775 569985 45679999
Q ss_pred eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEeee--CC
Q 013217 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--GG 319 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~ 319 (447)
+++ ++.+.+......... +.+....++..++++.+.. +++.+++.++++++.+.|++. +++.+. .+
T Consensus 283 ~~~------~l~~~l~~~~~~~t~-~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 352 (420)
T 2pb2_A 283 TTQ------EIASAFHVGSHGSTY-GGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG 352 (420)
T ss_dssp ECH------HHHTTCC----CCEE-CCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred EhH------HHHHhhcCCCcCccc-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 987 666655442111112 3355555555567776654 356778888888888888763 232211 11
Q ss_pred CCCeeEEecCCCC-CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 320 SDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 320 ~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
...++++++... +.+..++.+.|.++||.+... . ++.+|++++..++ ++|++++++.|+++++.
T Consensus 353 -~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~----~-----~~~iRl~~~~~~t----~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 353 -MGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA----G-----ADVMRFAPSLVVE----EADIHEGMQRFAQAVGK 417 (420)
T ss_dssp -ETTEEEEEECGGGTTCHHHHHHHHHHTTEECEES----S-----TTEEEECCCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred -cceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC----C-----CCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence 234556666431 124677888888899998642 1 3589999886666 99999999999988764
No 194
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.86 E-value=2.7e-20 Score=183.68 Aligned_cols=338 Identities=16% Similarity=0.143 Sum_probs=204.9
Q ss_pred HHHHHHHHHHH-hhcCeeEecCC-------CCCCHHHHHHHhhhh-hccCCCCCCCCcccCchhHHHHHHHHHHHHHHHH
Q 013217 8 VCEIITKEKER-QFKSLELIASE-------NFTSRAVMEAVGSCL-TNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 78 (447)
Q Consensus 8 ~~~~~~~e~~~-~~~~i~l~~~~-------n~~~~~v~~a~~~~~-~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~ 78 (447)
+..+...-.+. ..+.|+|..++ .++++.|.+++. .+ ......+|+.. ....++.+.+.+++.+.
T Consensus 16 i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~------~G~~~lr~aia~~~~~~ 88 (405)
T 3k7y_A 16 ILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLG------NGTEDFSTLTQNLIFGN 88 (405)
T ss_dssp HHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTT------SSCHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCC------CCcHHHHHHHHHHHcCC
Confidence 55555443222 23568987664 245788998876 43 22212234332 12234554555566544
Q ss_pred cCCC-CCccceeeecCCcH-HHHHHHHHHhcC--CCCEEEEecCCCCcccCCCccccccccccccceeEEEeccc-CCCC
Q 013217 79 FNLD-ENKWGVNVQPLSGS-PANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DEST 153 (447)
Q Consensus 79 ~g~~-~~~~~~~v~~~sGs-~a~~~~~~al~~--pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~ 153 (447)
.+.. .++. +.+..|+|+ +|+..++.++++ | |+|++.+|.|.++.. .+...|. +++.+++ ++++
T Consensus 89 ~~~~~~~~~-i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~ 156 (405)
T 3k7y_A 89 NSKYIEDKK-ICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN--------MIESRGF--NLKYINFFDYNL 156 (405)
T ss_dssp SCTTTTTTC-EEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH--------HHHTTTC--EEEEECCEETTT
T ss_pred CCccccccc-eEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH--------HHHHcCC--eEEEEecccccc
Confidence 4432 1122 123346665 899988888877 9 999999998877642 3345565 5555555 4346
Q ss_pred CCCCHHHHHHHhhhh-CCcEEEEcCC-CCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCC----
Q 013217 154 GLVDYDMLEKTAILF-RPKLIIAGAS-AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF---- 220 (447)
Q Consensus 154 ~~id~~~l~~~~~~~-~~klii~~~~-~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~---- 220 (447)
+.+|++++++.+++. ++++|+++.+ +||+ ..+ +++|.++|++||+++++|+++ .++.+.+... .++
T Consensus 157 ~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y-~~l~~~~~~~~~~~~~~~~ 235 (405)
T 3k7y_A 157 IDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAY-QGFGHTNLEEDVLLIRKFE 235 (405)
T ss_dssp TEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESC-TTTSSSSTTGGGHHHHHHH
T ss_pred CCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCc-ccccCCCcccchHHHHHHH
Confidence 789999999998752 4678888754 7886 444 578888999999999999985 5555432110 001
Q ss_pred C--cccEEEeCCCccc--CCCCCceEEe--ecCCcchhhHHHHhh----hccCCCCCCCCcHHHHHHHHHHHHHh--c--
Q 013217 221 K--YCDVVTTTTHKSL--RGPRGGMIFF--KKDPVLGVELESAIN----NAVFPGLQGGPHNHTIGGLAVCLKHA--Q-- 286 (447)
Q Consensus 221 ~--~~Di~~~s~~K~l--~Gp~gG~i~~--~~~~~~~~~~~~~i~----~~~~~~~~g~p~~~~~aal~~al~~~--~-- 286 (447)
. ..-+++.|++|++ +|+|.|++++ .++ ++.+++. ...... .+.++.....+.+.++..- .
T Consensus 236 ~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~-----~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~ 309 (405)
T 3k7y_A 236 EKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQ-----EEKKIVFNNLCFIVRKF-YSSPVIHTNRILCQLLNNQNLKLN 309 (405)
T ss_dssp TTTCCEEEEEECTTTSCCTTTTEEEEEEECSSH-----HHHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHHCHHHHHH
T ss_pred hcCCcEEEEeeCCccCCCccccceEEEEEeCCH-----HHHHHHHHHHHHHHhcc-cCCCcHHHHHHHHHHhCCHHHHHH
Confidence 1 1237789999987 5899999864 232 4443332 211111 2233433333333344321 0
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHH----HCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC
Q 013217 287 -SPEFKVYQNKVVSNCRALASRLV----ELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357 (447)
Q Consensus 287 -~~~~~~~~~~~~~~~~~l~~~L~----~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~ 357 (447)
....+++.+++.++++.+.+.|. +.| +++..+ ..++++|+.+. .+.+ ..|+++||.+. |+
T Consensus 310 ~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p-~gg~f~~~~l~-----~~~~-~~L~~~gV~v~----p~ 378 (405)
T 3k7y_A 310 WIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKK-QRGLFSFVPLL-----AKIA-EHLKTHHIYII----NN 378 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS-CCSSEEECGGG-----GGGT-TTTTTTTEECC----TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC-CceEEEecCCC-----HHHH-HHHHHCCEeec----CC
Confidence 11235566778899999999998 766 454433 34666676653 2334 44588999983 32
Q ss_pred CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 358 ~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
+ ||++...+ +++++++++.|++++.
T Consensus 379 --------~-Ris~a~~~-----~~~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 379 --------G-RINVSGIT-----KNNVDYIADKICLSLS 403 (405)
T ss_dssp --------S-EEEGGGCC-----TTHHHHHHHHHHHHHH
T ss_pred --------C-eEEEeccC-----HHHHHHHHHHHHHHHh
Confidence 2 88865433 6899999999999875
No 195
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.86 E-value=1.3e-20 Score=185.40 Aligned_cols=285 Identities=15% Similarity=0.121 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccc
Q 013217 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 140 (447)
Q Consensus 61 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 140 (447)
++...+++ +++++++|.+. .+.++||++|+..++.+++++||+|++.++.|++...... ..+...|.
T Consensus 58 ~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~----~~~~~~g~ 124 (389)
T 3acz_A 58 NPTVEQFE----EMVCSIEGAAG-----SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFT----HWLPRFGI 124 (389)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHH----HHHHHTTC
T ss_pred ChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCC
Confidence 34455555 68889999872 3456899999999999999999999999998877532110 00123343
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCC
Q 013217 141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 218 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~ 218 (447)
+++.++. .|++++++++++ ++++|++++++||+ ..|+++|.++|+++|+++++|++|..+... .
T Consensus 125 --~~~~v~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~-----~ 190 (389)
T 3acz_A 125 --EVDLIDT------SDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL-----K 190 (389)
T ss_dssp --EEEEECT------TCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-----C
T ss_pred --EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc-----C
Confidence 4444332 489999999987 89999998777765 789999999999999999999998766421 2
Q ss_pred CCC-cccEEEeCCCcccCCCC---CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217 219 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 294 (447)
Q Consensus 219 ~~~-~~Di~~~s~~K~l~Gp~---gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~ 294 (447)
|+. ++|+++.|+||+++||. +|+++++++ ++.+.+....... .++.+....+ .++..+. .+..+.
T Consensus 191 ~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~-----~~~~~l~~~~~~~-g~~~~~~~~~---~~~~~l~--~l~~r~ 259 (389)
T 3acz_A 191 PLELGADIALHSVSKYINGHGDVIGGVSSAKTA-----EDIATIKFYRKDA-GSLMAPMDAF---LCARGMK--TLPIRM 259 (389)
T ss_dssp GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHH-CCCCCHHHHH---HHHHHHT--THHHHH
T ss_pred ccccCCeEEEECChhhccCCCCceeEEEEECcH-----HHHHHHHHHHHhc-CCCCCHHHHH---HHHcCcc--HHHHHH
Confidence 222 58999999999998764 488888872 3555554432111 1222322221 1222222 245567
Q ss_pred HHHHHHHHHHHHHHHHCC-cE-eeeCC---------------CCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccC----
Q 013217 295 NKVVSNCRALASRLVELG-YK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKN---- 353 (447)
Q Consensus 295 ~~~~~~~~~l~~~L~~~g-~~-~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~---- 353 (447)
++..+++..+.+.|++.+ +. ++.++ ....++.+.+. + ..++.+.|.+.||.+...
T Consensus 260 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~--~--~~~~~~~l~~~~i~~~~~s~G~ 335 (389)
T 3acz_A 260 QIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK--S--FEAAKKLMEHLKVCTLAVSLGC 335 (389)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--S--HHHHHHHHTTCSSSEEBSCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC--C--HHHHHHHHHhCCCcEECcCCCC
Confidence 788889999999998743 21 11111 01223344443 2 567888888888876542
Q ss_pred -----CCCCCCC------------CCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217 354 -----SVPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391 (447)
Q Consensus 354 -----~~p~~~~------------~~~~~~iRig~~~~~~~g~~~~di~~l~~~i 391 (447)
..|.... ...++.||++++..++ ++.++.+.++|
T Consensus 336 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~----~~li~~l~~al 386 (389)
T 3acz_A 336 VDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENV----DDIIADLKQAL 386 (389)
T ss_dssp SSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCH----HHHHHHHHHHH
T ss_pred cccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCH----HHHHHHHHHHH
Confidence 1121100 1124689999876554 55555555444
No 196
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.86 E-value=1.3e-20 Score=186.75 Aligned_cols=336 Identities=16% Similarity=0.151 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHh-hcCeeEecCCC---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-
Q 013217 8 VCEIITKEKERQ-FKSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD- 82 (447)
Q Consensus 8 ~~~~~~~e~~~~-~~~i~l~~~~n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~- 82 (447)
+..+...-.+.. .+.|+|..+.. ..++.+.+++.+.... ...+|.. .....++++...+++ +|.+
T Consensus 28 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~-~~~~y~~------~~g~~~lr~~ia~~~---~~~~~ 97 (409)
T 4eu1_A 28 ILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATLG-TNMDYAP------VTGIASFVEEAQKLC---FGPTC 97 (409)
T ss_dssp HHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCC-SCCCCCC------TTCCHHHHHHHHHHH---HCSSC
T ss_pred HHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCcc-ccccCCC------CCCcHHHHHHHHHHH---cCCCc
Confidence 455554433322 34578866653 2355666666554211 1123322 111234543322332 3654
Q ss_pred ----CCccceeeecCCcHHHHHHH---HHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC-CCCC
Q 013217 83 ----ENKWGVNVQPLSGSPANFEV---YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTG 154 (447)
Q Consensus 83 ----~~~~~~~v~~~sGs~a~~~~---~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~ 154 (447)
++++ ..+++.+|++++..+ +.+++++||+|++.+|.|.++.. .+...|. +++.++++ .+++
T Consensus 98 ~~~~~~~i-~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~ 166 (409)
T 4eu1_A 98 AALRDGRI-ASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES--------IFAKAGM--ELTPYSYYDPATK 166 (409)
T ss_dssp HHHHTTCE-EEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCEETTTT
T ss_pred hhhccCce-eeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCC--eEEEEEeecCcCC
Confidence 3332 112335555666554 44567899999999998877632 2344554 55555552 3567
Q ss_pred CCCHHHHHHHhhhh--CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccccC--CC------C
Q 013217 155 LVDYDMLEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV--AD------P 219 (447)
Q Consensus 155 ~id~~~l~~~~~~~--~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~--~~------~ 219 (447)
.+|++++++.+++. ++++++++.++||+ ..+ +++|.++|+++|+++++|++|. ++...+.. .. .
T Consensus 167 ~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~ 245 (409)
T 4eu1_A 167 GLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ-GFATGQLDYDAFVPRHLVD 245 (409)
T ss_dssp EECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHHHHTHHHHHHHT
T ss_pred cCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc-ccccCCcccchHHHHHHHh
Confidence 89999999999742 45566667788886 555 5569999999999999999964 33332210 00 0
Q ss_pred CCcccEEEeCCCccc--CCCCCceE--EeecCCcchhh----HHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc-----
Q 013217 220 FKYCDVVTTTTHKSL--RGPRGGMI--FFKKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ----- 286 (447)
Q Consensus 220 ~~~~Di~~~s~~K~l--~Gp~gG~i--~~~~~~~~~~~----~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~----- 286 (447)
.....+++.|++|++ +|.|.|++ ++.++ + +.+.+......+. .+++....++.+.+++...
T Consensus 246 ~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~-----~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 319 (409)
T 4eu1_A 246 MVPNLIVAQSFSKNFGLYGHRCGALHISTASA-----EEAKRLVSQLALLIRPMY-NNPPLYGAWVVSSILKDPQLTALW 319 (409)
T ss_dssp TSSCCEEEEECTTTSSCGGGCCEEEEEECSSH-----HHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHCHHHHHHH
T ss_pred hCCcEEEEecCcccccCccCCceEEEEEeCCH-----HHHHHHHHHHHHHHhhhc-CCCChHHHHHHHHHhCCHHHHHHH
Confidence 011237889999987 46777996 55442 5 4444433211111 2233333334444554210
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCC
Q 013217 287 SPEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSAL 362 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~ 362 (447)
....++..+++.++++.+.+.|.+.| +++..+ ..+.+.|+++ +.+.+...|+++||.+..
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~ll~~~gv~v~p---------- 383 (409)
T 4eu1_A 320 KKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIER-QVGMMAYTGL-----TREQVELLRSEYHIYMTL---------- 383 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH-SCSSEEECCC-----CHHHHHHHHHHHCEECCT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC-CceEEEEeCC-----CHHHHHHHHHcCCEEEcC----------
Confidence 12246677888899999999999877 554432 2344555443 355666777789999842
Q ss_pred CCCeEEEecCccccCCCCHHHHHHHHHHHHHHH
Q 013217 363 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 395 (447)
Q Consensus 363 ~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l 395 (447)
+.|+++...+ ++|+++++++|++++
T Consensus 384 ---~~Ri~~~~~~-----~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 384 ---NGRAAVSGLN-----STNVEYVSQAIHNVT 408 (409)
T ss_dssp ---TCEEEGGGCC-----TTTHHHHHHHHHHHH
T ss_pred ---CCEEEEEecC-----HhhHHHHHHHHHHHh
Confidence 2477765444 577999999998765
No 197
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.86 E-value=9.6e-20 Score=181.30 Aligned_cols=321 Identities=15% Similarity=0.031 Sum_probs=197.8
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcHHHHHHHHH---Hhc
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYT---AIL 107 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs~a~~~~~~---al~ 107 (447)
.+|.+++++...+.. + ++....+ ...+...++ ++.++++++.+. +. .+.+++|++|+..++. ++.
T Consensus 58 ~~~~v~~a~~~~~~~-~--~~~~~~~-~~~~~~~~l----~~~la~~~~~~~~~~---v~~~~g~~~a~~~~~~~a~~~~ 126 (426)
T 1sff_A 58 LHPKVVAAVEAQLKK-L--SHTCFQV-LAYEPYLEL----CEIMNQKVPGDFAKK---TLLVTTGSEAVENAVKIARAAT 126 (426)
T ss_dssp TCHHHHHHHHHHTTT-C--SCCCTTT-EECHHHHHH----HHHHHHHSSCSSCEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-C--CCccccc-cCCHHHHHH----HHHHHHhCCcccccE---EEEeCchHHHHHHHHHHHHHhh
Confidence 579999999887754 2 1211112 222333334 467888883222 32 1333555699998887 677
Q ss_pred CCCCEEEEecCCCCcccCCCccccccccccccc-------------eeEEEecccCC--CCCCCCHHHHHHHhhh----h
Q 013217 108 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVDYDMLEKTAIL----F 168 (447)
Q Consensus 108 ~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~~id~~~l~~~~~~----~ 168 (447)
++| +|++.++.|.+.... .+...|. .+..++++.+. .++.+|+++|++++++ .
T Consensus 127 ~~~-~vi~~~p~y~~~~~~-------~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (426)
T 1sff_A 127 KRS-GTIAFSGAYHGRTHY-------TLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPE 198 (426)
T ss_dssp TCC-EEEEETTCCCCSSHH-------HHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGG
T ss_pred CCC-eEEEECCCcCCCchH-------hhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCC
Confidence 787 888888887554210 0111111 12334433210 1235799999998874 3
Q ss_pred CCcEEEEcC-CCCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCC
Q 013217 169 RPKLIIAGA-SAYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPR 238 (447)
Q Consensus 169 ~~klii~~~-~~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~ 238 (447)
++++|++++ +++++ ..+ +++|.++|++||+++|+|++|+ |+...+.. . ...+ ..|++ |++|+++ |.|
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~Glr 275 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFP 275 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSC
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccCCCc
Confidence 678888863 34456 667 8999999999999999999986 65433211 0 0111 25766 5669985 445
Q ss_pred CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHCC--cE--
Q 013217 239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YK-- 314 (447)
Q Consensus 239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-- 314 (447)
.|++++++ ++.+.+....... ..+++....+++.++++.+... ++.+++.++++.+.+.|.+.+ +.
T Consensus 276 iG~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~ 345 (426)
T 1sff_A 276 LAGVTGRA------EVMDAVAPGGLGG-TYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEI 345 (426)
T ss_dssp CEEEEEEH------HHHTTSCTTSBCC-SSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred eEEEEEcH------HHHhhhccCCcCc-CCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 59999988 6766665321112 2233555556666677765432 346677788888888886632 22
Q ss_pred -eeeCCCCCeeEEecCCC-------CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217 315 -LVSGGSDNHLVLVDLRP-------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA 386 (447)
Q Consensus 315 -~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~ 386 (447)
...+ ...++++++.. .+.+..++.+.|.++||.+..+ .. .++.+|++++..++ ++|+++
T Consensus 346 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~----~~---~~~~iRi~~~~~~~----~~~i~~ 412 (426)
T 1sff_A 346 GDVRG--LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSC----GP---YYNVLRILVPLTIE----DAQIRQ 412 (426)
T ss_dssp EEEEE--ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEE----ST---TSCEEEECCCTTCC----HHHHHH
T ss_pred EEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecC----CC---CCCEEEEECCccCC----HHHHHH
Confidence 2222 24566777642 1234566788888899998643 21 14689999886666 999999
Q ss_pred HHHHHHHHHHH
Q 013217 387 IADFIHEGVEI 397 (447)
Q Consensus 387 l~~~i~~~l~~ 397 (447)
+++.|+++++.
T Consensus 413 ~~~~l~~~l~~ 423 (426)
T 1sff_A 413 GLEIISQCFDE 423 (426)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 198
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.86 E-value=7.2e-21 Score=187.45 Aligned_cols=321 Identities=15% Similarity=0.146 Sum_probs=195.4
Q ss_pred cCeeEecCC----C---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc-CC--CCCccceee
Q 013217 21 KSLELIASE----N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NL--DENKWGVNV 90 (447)
Q Consensus 21 ~~i~l~~~~----n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~-g~--~~~~~~~~v 90 (447)
..|+|..+. + ++++.+.+++...+.+....+|+.. ....++++ .+++++ +. +++.+ +.+
T Consensus 27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~----~la~~~~~~~~~~~~v-~~~ 95 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGL------SGEPEFQK----AMGELILGDGLKSETT-ATL 95 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCS------SCCHHHHH----HHHHHHHGGGCCGGGE-EEE
T ss_pred cccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCC------CCcHHHHH----HHHHHHhCCCCCcccE-EEE
Confidence 567887666 1 3469999999877653212233321 11234443 344443 33 44432 111
Q ss_pred ecCCcHHHHHHHHHHhc--CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCC-CCCCCCHHHHHHHhhh
Q 013217 91 QPLSGSPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL 167 (447)
Q Consensus 91 ~~~sGs~a~~~~~~al~--~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~~~~ 167 (447)
++++|++|+..++.++. .|||+|++..|.|.++.. .+...|. +++.+++++ +++.+|++++++++++
T Consensus 96 ~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~ 165 (394)
T 2ay1_A 96 ATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS--------IMNFMGL--PVQTYRYFDAETRGVDFEGMKADLAA 165 (394)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHHTC--CEEEEECEETTTTEECHHHHHHHHHT
T ss_pred ecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCC--ceEEEecccccCCccCHHHHHHHHHh
Confidence 24556699998887764 499999999988876531 2233454 344444432 3577999999999876
Q ss_pred h--CCcEEEEcCCCCCC--CCC---hHHHHHHHHHhCCEEEEehhhhccccccc---cCC-CCCC--c-ccEEEeCCCcc
Q 013217 168 F--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS---VVA-DPFK--Y-CDVVTTTTHKS 233 (447)
Q Consensus 168 ~--~~klii~~~~~~~~--~~~---~~~i~~ia~~~g~~livD~a~~~g~~~~~---~~~-~~~~--~-~Di~~~s~~K~ 233 (447)
. ++++++++.++||+ ..+ +++|.++|+++|+++++|++|... ...+ ..+ ..+. + ..+++.|+||+
T Consensus 166 ~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 244 (394)
T 2ay1_A 166 AKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGF-GDGLEEDAAGTRLIASRIPEVLIAASCSKN 244 (394)
T ss_dssp CCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTS-SSCHHHHHHHHHHHHHHCSSEEEEEECTTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCcccc-ccCcccchHHHHHHhhcCCCEEEEEeccCC
Confidence 3 25667777778775 444 568899999999999999997532 2211 000 0011 1 24778999999
Q ss_pred cC--CCCCceEEe---ecCCcchhhHH----HHhhhccCCCCCCCCcHHHHHHHHHHHHHh-----cChhHHHHHHHHHH
Q 013217 234 LR--GPRGGMIFF---KKDPVLGVELE----SAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVS 299 (447)
Q Consensus 234 l~--Gp~gG~i~~---~~~~~~~~~~~----~~i~~~~~~~~~g~p~~~~~aal~~al~~~-----~~~~~~~~~~~~~~ 299 (447)
++ |.|.|++++ ++ ++. +.+....... .++++....++...+++.. ...+.++..+++.+
T Consensus 245 ~~~~G~riG~~~~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~ 317 (394)
T 2ay1_A 245 FGIYRERTGCLLALCADA------ATRELAQGAMAFLNRQT-YSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLR 317 (394)
T ss_dssp TTCGGGCEEEEEEECSSH------HHHHHHHHHHHHHHHTT-TSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCCccceEEEEeCCH------HHHHHHHHHHHHHHhhh-cCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 74 666699987 33 332 2222111111 2233444444444455432 01235667788888
Q ss_pred HHHHHHHHHHHCC----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217 300 NCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 375 (447)
Q Consensus 300 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~ 375 (447)
+++.+.+.|.+.+ +++..+ ....+.|+++ +.+.+.+.|.++||.+.. ++|++++ .+
T Consensus 318 ~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~~l~~~gi~v~~-------------~~Ris~~-~~ 377 (394)
T 2ay1_A 318 LREQLAGELRDLSGSDRFGFVAE-HRGMFSRLGA-----TPEQVKRIKEEFGIYMVG-------------DSRINIA-GL 377 (394)
T ss_dssp HHHHHHHHHHHHHTSSTTTHHHH-CCSSEEECCC-----CHHHHHHHHHHHCEECCT-------------TCEEEGG-GC
T ss_pred HHHHHHHHHHhcCCCCCeeEEcC-CceEEEeeCC-----CHHHHHHHHHhCCEEecC-------------CCeEEee-cC
Confidence 8889999988753 665443 2244556554 346678888899999842 4799976 33
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 013217 376 TRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 376 ~~g~~~~di~~l~~~i~~~ 394 (447)
+ ++|++++++.|+++
T Consensus 378 ~----~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 378 N----DNTIPILARAIIEV 392 (394)
T ss_dssp C----TTTHHHHHHHHHHH
T ss_pred C----HhhHHHHHHHHHHc
Confidence 4 89999999988764
No 199
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.85 E-value=2.5e-19 Score=176.51 Aligned_cols=315 Identities=14% Similarity=0.119 Sum_probs=190.7
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 107 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---- 107 (447)
.+|.|.+++...+... ..++ ..+ ..+...++ ++++++++|.+. .+.++||++|+..++.++.
T Consensus 53 ~~p~v~~a~~~~~~~~-~~~~--~~~--~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~ea~~~al~~~~~~~~ 118 (395)
T 3nx3_A 53 NHAKFNAKIKAQVDKL-LHTS--NLY--YNENIAAA----AKNLAKASALER-----VFFTNSGTESIEGAMKTARKYAF 118 (395)
T ss_dssp SCHHHHHHHHHHHTTC-SCCC--TTS--BCHHHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cccc--ccc--CCHHHHHH----HHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 3799999998877542 2222 111 22333344 367888888432 2445777899999888764
Q ss_pred ---CCCCEEEEecCCCCcccCCCcccccccc---ccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-C
Q 013217 108 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRV---SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-Y 180 (447)
Q Consensus 108 ---~pgd~Vl~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~-~ 180 (447)
.++|+|++.++.|.+............. .+......+..++ ..|+++|++++++ ++++|++.+++ +
T Consensus 119 ~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~~~~~~ 191 (395)
T 3nx3_A 119 NKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAK------YNDISSVEKLVNE-KTCAIILESVQGE 191 (395)
T ss_dssp HTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEEC------TTCHHHHHTTCCT-TEEEEEEESEECT
T ss_pred ccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeC------CCCHHHHHHhccC-CeEEEEEeCccCC
Confidence 4689999999887654210000000000 0000000111211 1389999999875 78888887543 3
Q ss_pred CC-CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CC-CCCC-cccEEEeCCCcccC-CCCCceEEeecCCcch
Q 013217 181 PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLG 251 (447)
Q Consensus 181 ~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~-~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~~~ 251 (447)
++ ..+ +++|.++|++||+++|+|++|. |+...+. .. ...+ ..|++++| |+++ |++.|++++++
T Consensus 192 ~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~----- 263 (395)
T 3nx3_A 192 GGINPANKDFYKALRKLCDEKDILLIADEIQC-GMGRSGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVINQ----- 263 (395)
T ss_dssp TSCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEECH-----
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCcCCcchhHHhcCCCCCEEEec--ccccCCCceEEEEEch-----
Confidence 34 334 8999999999999999999974 3322221 00 0011 25777654 9874 56679999988
Q ss_pred hhH-HHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CC-cEeeeCCCCCeeE
Q 013217 252 VEL-ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LG-YKLVSGGSDNHLV 325 (447)
Q Consensus 252 ~~~-~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~ 325 (447)
++ .+.+......+.+ +.+....++..++++.+..+ ++.+++.++.+++++.|.+ .+ +....+ ...++
T Consensus 264 -~~~~~~~~~~~~~~~~-~~~~~~~~aa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~ 336 (395)
T 3nx3_A 264 -KVASNSLEAGDHGSTY-GGNPLVCAGVNAVFEIFKEE---KILENVNKLTPYLEQSLDELINEFDFCKKRKG--LGFMQ 336 (395)
T ss_dssp -HHHHHHSCTTCCSSCB-SCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE--ETTEE
T ss_pred -hhhhhhcCCcccCCCC-CCCHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--EEEEE
Confidence 66 7776554322222 33445555555567655322 3355566666666666654 22 222221 23455
Q ss_pred EecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 326 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 326 ~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
++++... .+..++.+.|.++||.++.. ..+.+|++++..++ ++|++++++.|+++++
T Consensus 337 ~~~~~~~-~~~~~~~~~l~~~Gi~v~~~---------~~~~iRi~~~~~~t----~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 337 GLSLDKS-VKVAKVIQKCQENALLLISC---------GENDLRFLPPLILQ----KEHIDEMSEKLRKALK 393 (395)
T ss_dssp EEEECTT-SCHHHHHHHHHHTTEECEEE---------TTTEEEECCCTTCC----HHHHHHHHHHHHHHHH
T ss_pred EEEeCCc-chHHHHHHHHHHCCCEEecC---------CCCEEEEECCCCCC----HHHHHHHHHHHHHHHH
Confidence 6666432 35678888898999998642 14589999887777 9999999999998875
No 200
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=6.4e-20 Score=182.33 Aligned_cols=327 Identities=15% Similarity=0.081 Sum_probs=194.3
Q ss_pred eeEecCC--CCC----CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCc
Q 013217 23 LELIASE--NFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSG 95 (447)
Q Consensus 23 i~l~~~~--n~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sG 95 (447)
|++..+. +++ +|.|.+++...+... .. +...+| . .+...++ ++++++++|.+ ++++ +..++|
T Consensus 45 lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~-~~-~~~~~~-~-~~~~~~l----~~~la~~~~~~~~~~v---~~~~gg 113 (419)
T 2eo5_A 45 LDFTSGIGVNNLGWPSHPEVIKIGIEQMQKL-AH-AAANDF-Y-NIPQLEL----AKKLVTYSPGNFQKKV---FFSNSG 113 (419)
T ss_dssp EESSGGGGTTTTCBSCCHHHHHHHHHHHTTS-CC-CSCSCS-C-CHHHHHH----HHHHHHHSSCSSCEEE---EEESSH
T ss_pred EEccCChhhhccCCCCCHHHHHHHHHHHhhC-cc-cccccc-C-CHHHHHH----HHHHHHhCCCCcCCEE---EEeCch
Confidence 4554554 333 799999998877542 11 111111 1 1222233 35788899987 5432 223556
Q ss_pred HHHHHHHHHHhcC-CCCEEEEecCCCCcccCCCcc------ccccccccccceeEEEecccCCCCCC-------------
Q 013217 96 SPANFEVYTAILK-PHDRIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRLDESTGL------------- 155 (447)
Q Consensus 96 s~a~~~~~~al~~-pgd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~------------- 155 (447)
++|+..++.++.. +||+|++.+|.+.+....... ..+.........+..++ ++ +.+.
T Consensus 114 ~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~~~~g~~~~~~~~~ 190 (419)
T 2eo5_A 114 TEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVP--YP-NPYRNPWHINGYENPSE 190 (419)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEEC--CC-CSSSCTTCCCTTTCHHH
T ss_pred HHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEEC--CC-ccccccccccccccchh
Confidence 6999998887643 499999999887543210000 00000000011223333 32 2221
Q ss_pred ---CCHHHHH-HHhhh----hCCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-
Q 013217 156 ---VDYDMLE-KTAIL----FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP- 219 (447)
Q Consensus 156 ---id~~~l~-~~~~~----~~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~- 219 (447)
+|+++|+ +++++ .++++|++++.+++ + ..+ +++|.++|++||+++|+|++|. |+...+.. ...
T Consensus 191 ~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-~~g~~g~~~~~~~ 269 (419)
T 2eo5_A 191 LVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM-GLGRTGKLFAIEN 269 (419)
T ss_dssp HHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGG
T ss_pred hHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCcchhhHHh
Confidence 4789999 88874 35678887755444 4 455 8999999999999999999985 33222211 001
Q ss_pred CC-cccEEEeCCCcccCC--CCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHH
Q 013217 220 FK-YCDVVTTTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 296 (447)
Q Consensus 220 ~~-~~Di~~~s~~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~ 296 (447)
.. ..|+++ ++|++++ .|.|++++++ ++. .+ .....+. .+.+...+++..++++... +..++
T Consensus 270 ~~~~~d~~t--~sK~~~~G~~riG~~~~~~------~~~-~~-~~~~~~t-~~~n~~~~~aa~aal~~~~-----~~~~~ 333 (419)
T 2eo5_A 270 FNTVPDVIT--LAKALGGGIMPIGATIFRK------DLD-FK-PGMHSNT-FGGNALACAIGSKVIDIVK-----DLLPH 333 (419)
T ss_dssp GTCCCSEEE--ECGGGGTTTSCCEEEEEEG------GGC-CC-------C-CCCCHHHHHHHHHHHHHHH-----HHHHH
T ss_pred cCCCCCEEE--ecccccCCccceEEEEEch------Hhh-cC-CcccCCC-CCCCHHHHHHHHHHHHHHH-----HHHHH
Confidence 11 357764 5599864 5669999987 444 44 2111111 2335555666666776532 25778
Q ss_pred HHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcccc
Q 013217 297 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT 376 (447)
Q Consensus 297 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~ 376 (447)
+.+++++|.+.|.+. +..+.+ ...++++++.+...... +.+.|.++||.++.. . .+.+|++++..++
T Consensus 334 ~~~~~~~l~~~L~~~-~~~~~~--~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~----~-----~~~lRis~~~~~t 400 (419)
T 2eo5_A 334 VNEIGKIFAEELQGL-ADDVRG--IGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPA----G-----RSAIRVIPPLVIS 400 (419)
T ss_dssp HHHHHHHHHHHHTTS-SSEEEE--ETTEEEEECSCHHHHHH-HHHHHHHTTEECEEE----T-----TTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHHh-hhheEe--eeEEEEEEEecCccHHH-HHHHHHHCCCEEecC----C-----CCEEEEECCCCCC
Confidence 888899999999775 322222 23455677642111234 777777899998642 1 3589998887777
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 013217 377 RGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 377 ~g~~~~di~~l~~~i~~~l~~ 397 (447)
++|++++++.|++++..
T Consensus 401 ----~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 401 ----EEEAKQGLDILKKVIKV 417 (419)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHh
Confidence 99999999999988753
No 201
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.85 E-value=1.6e-19 Score=181.02 Aligned_cols=321 Identities=16% Similarity=0.066 Sum_probs=197.1
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcc-cCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC--
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-- 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~-~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~-- 108 (447)
.+|.|.+++...+.+. . + .++ .+..+...++ +++++++++.+.+. .+.+++|++|+.+++.++..
T Consensus 67 ~~~~v~~a~~~~~~~~-~--~--~~~~~~~~~~~~~l----~~~la~~~~~~~~~---v~~~~ggsea~~~al~~~~~~~ 134 (449)
T 3a8u_X 67 TRKEIQEAVAKQLSTL-D--Y--SPGFQYGHPLSFQL----AEKITDLTPGNLNH---VFFTDSGSECALTAVKMVRAYW 134 (449)
T ss_dssp SCHHHHHHHHHHTTTC-S--C--CCSSSCCCHHHHHH----HHHHHTTSSTTEEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-C--C--ccccccCCHHHHHH----HHHHHHhCCCCCCE---EEEcCcHHHHHHHHHHHHHHHH
Confidence 3799999998877542 1 1 111 1112222333 46788888766542 23346677999999887753
Q ss_pred ------CCCEEEEecCCCCcccCCCcccccccccccc------------ceeEEEecccCCC-C-CCCC--------HHH
Q 013217 109 ------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES-T-GLVD--------YDM 160 (447)
Q Consensus 109 ------pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~-~-~~id--------~~~ 160 (447)
+||+|++.++.|.+.... .+...| ..+..++++.... . ..+| +++
T Consensus 135 ~~~g~~~~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~ 207 (449)
T 3a8u_X 135 RLKGQATKTKMIGRARGYHGVNIA-------GTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207 (449)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHH-------HHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCCChh-------hhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHH
Confidence 789999998887654210 011111 1123344322100 0 1246 999
Q ss_pred HHHHhhh---hCCcEEEEcCCCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhh-ccccccccCC-CCCC-cccEEEe
Q 013217 161 LEKTAIL---FRPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVA-DPFK-YCDVVTT 228 (447)
Q Consensus 161 l~~~~~~---~~~klii~~~~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~-~g~~~~~~~~-~~~~-~~Di~~~ 228 (447)
|++++++ .++++|++++.++ ++ ..+ +++|.++|++||+++|+|++|. .|.... ... ..+. ..|++
T Consensus 208 le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~~~~di~-- 284 (449)
T 3a8u_X 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS-MFGADSFGVTPDLM-- 284 (449)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHTCCCSEE--
T ss_pred HHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc-chhhhhcCCCCCEE--
Confidence 9999874 2567887775433 34 577 9999999999999999999984 332211 000 0001 25777
Q ss_pred CCCcccCC--CCCceEEeecCCcchhhHHHHhhhcc--------CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 013217 229 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINNAV--------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV 298 (447)
Q Consensus 229 s~~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~~--------~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~ 298 (447)
|++|+|+| .|.|++++++ ++.+.+.... ..+...+.+...+++..++++.+... ++.+++.
T Consensus 285 s~sK~l~~G~~~~G~~~~~~------~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~---~~~~~~~ 355 (449)
T 3a8u_X 285 CIAKQVTNGAIPMGAVIAST------EIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE---NLVQSVA 355 (449)
T ss_dssp EECGGGGTTSSCCEEEEEEH------HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHH
T ss_pred EEcccccCCCCceEEEEECH------HHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence 45599965 5788888887 6777765431 11112233555566666677765432 3567788
Q ss_pred HHHHHHHHHHHHCC-cEeeeC-CCCCeeEEecCCCCCC----CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecC
Q 013217 299 SNCRALASRLVELG-YKLVSG-GSDNHLVLVDLRPMGI----DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP 372 (447)
Q Consensus 299 ~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~v~~~~~~~----~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~ 372 (447)
++.+.+.+.|.+.+ +..+.. .....++++++..... +..++.+.|.++||.++.. .+.+|++++
T Consensus 356 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g~~iRis~~ 425 (449)
T 3a8u_X 356 EVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG----------GDTLQFGPT 425 (449)
T ss_dssp HHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE----------TTEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC----------CCEEEEECC
Confidence 88889999887732 322210 0123456777653211 1236788888889998642 158999988
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 373 AMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 373 ~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
..++ ++|++++++.|+++++.
T Consensus 426 ~~~t----~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 426 FNSK----PQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp TTCC----HHHHHHHHHHHHHHHHH
T ss_pred CcCC----HHHHHHHHHHHHHHHHH
Confidence 7777 99999999999988763
No 202
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.85 E-value=3.3e-20 Score=186.18 Aligned_cols=281 Identities=17% Similarity=0.133 Sum_probs=177.2
Q ss_pred HHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccC
Q 013217 71 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 150 (447)
Q Consensus 71 ~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 150 (447)
+++++++++|.+. .+.+++|++|+.+++. +++|||+|++.++.|+++..... ..+...|. +++.++.
T Consensus 138 l~~~la~~~g~~~-----~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G~--~v~~v~~- 204 (464)
T 1ibj_A 138 LESLLAKLDKADR-----AFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLS----QVVPRSGV--VVKRVNT- 204 (464)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH----HTSGGGTC--EEEEECT-
T ss_pred HHHHHHHHhCCCe-----EEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHH----HHHHHcCC--EEEEeCC-
Confidence 3478899999762 3445888888887764 78999999999998876531100 01223444 4445433
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEE
Q 013217 151 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT 227 (447)
Q Consensus 151 ~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~ 227 (447)
.|++++++++++ +|++|++++++||+ ..|+++|.++|+++|+++++|++|+.|... .++. ++|+++
T Consensus 205 -----~d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~-----~~~~~~~div~ 273 (464)
T 1ibj_A 205 -----TKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS-----RPLELGADIVM 273 (464)
T ss_dssp -----TSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC-----CGGGTTCSEEE
T ss_pred -----CCHHHHHHHhcc-CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC-----ChhhcCCEEEE
Confidence 289999999986 89999999888775 779999999999999999999999766432 1222 489999
Q ss_pred eCCCcccCCC---CCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 013217 228 TTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304 (447)
Q Consensus 228 ~s~~K~l~Gp---~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l 304 (447)
+|+||+++|| ++|+++++++ ++.+.+....... .++.+.....+...+++ ....+.++..+++..+
T Consensus 274 ~S~sK~~~g~~Gl~~G~l~~~~~-----~l~~~l~~~~~~~-g~~~~~~~~~a~~~al~-----~~~~r~~~~~~~~~~l 342 (464)
T 1ibj_A 274 HSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYFLQNSE-GSGLAPFDCWLCLRGIK-----TMALRIEKQQENARKI 342 (464)
T ss_dssp EETTTTTTCSSCCCCEEEEECSH-----HHHHHHHHHHHHT-TCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHH
T ss_pred ECCcccccCCCCCcEEEEEEChH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhchh-----hHHHHHHHHHHHHHHH
Confidence 9999999765 5599999863 5666655432111 12223322222222332 2333455556666667
Q ss_pred HHHHHHCC---------------cEeeeCCC--CCeeEEecCCCCCCC-HHHHHHHHhhcCeEEccCC------CCCCC-
Q 013217 305 ASRLVELG---------------YKLVSGGS--DNHLVLVDLRPMGID-GARVEKILDMASITLNKNS------VPGDK- 359 (447)
Q Consensus 305 ~~~L~~~g---------------~~~~~~~~--~~~~~~v~~~~~~~~-~~~~~~~L~~~gI~v~~~~------~p~~~- 359 (447)
.+.|++.+ +++..+.. ...++++++. +.. ...+.+.|...||.++.+. .|...
T Consensus 343 ~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~--~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~ 420 (464)
T 1ibj_A 343 AMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG--SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMS 420 (464)
T ss_dssp HHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS--CHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTT
T ss_pred HHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC--CHHHHHHHHHhcCcceEeecCCCCceeeecccccc
Confidence 77776532 22221110 1235666663 221 2346666766788877542 12100
Q ss_pred -----------CCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 360 -----------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 360 -----------~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
....++.+|++++. +|++++++.|++++.
T Consensus 421 ~~~~~~~~~~~~g~~~~~iRlsvg~--------edi~~li~~L~~al~ 460 (464)
T 1ibj_A 421 HASIPAEVREARGLTEDLVRISAGI--------EDVDDLISDLDIAFK 460 (464)
T ss_dssp TCSCCSSSSSSSSCCTTCEEEECCS--------SCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCCCcCeEEEEeCC--------CCHHHHHHHHHHHHh
Confidence 01124579998763 688889998888775
No 203
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.85 E-value=1.6e-18 Score=172.80 Aligned_cols=327 Identities=13% Similarity=0.083 Sum_probs=185.0
Q ss_pred CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc-----
Q 013217 33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----- 107 (447)
Q Consensus 33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~----- 107 (447)
+|.|.+++.+.+.+. ..+++ .++ ..+...++ ++++++.++.+.+.+ +..++|++|+..++.+++
T Consensus 47 ~p~v~~a~~~~~~~~-~~~~~-~~~--~~~~~~~l----~~~la~~~~~~~~~v---~~~~gg~ea~~~al~~~~~~~~~ 115 (430)
T 3i4j_A 47 RAEVGERMAAQAARL-PFVHG-SQF--SSDVLEEY----AGRLARFVGLPTFRF---WAVSGGSEATESAVKLARQYHVE 115 (430)
T ss_dssp CHHHHHHHHHHHHHC-CCCCT-TTC--EEHHHHHH----HHHHHHHTTCTTCEE---EEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-ccccc-ccc--CCHHHHHH----HHHHHHhCCCCCCEE---EEeCcHHHHHHHHHHHHHHHHHh
Confidence 899999998877542 11111 111 12223333 467888998776532 334567799999988876
Q ss_pred ---CCCCEEEEecCCCCcccCCCccccccccccccc--------------eeEEEecccCCCCCCCCHHHHHHHhhh---
Q 013217 108 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--------------YFESMPYRLDESTGLVDYDMLEKTAIL--- 167 (447)
Q Consensus 108 ---~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~~~id~~~l~~~~~~--- 167 (447)
.++|+|++.++.|.+..... ....+. .+..++++-....+..|+++|++++++
T Consensus 116 ~g~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 188 (430)
T 3i4j_A 116 RGEPGRFKVITRVPSYHGASLGS-------LAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGP 188 (430)
T ss_dssp TTCTTCCEEEEETTC--------------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCG
T ss_pred cCCCCCcEEEEEeCCcCCCCccc-------ccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCC
Confidence 45789999998876543111 011111 111111110000023477899998874
Q ss_pred hCCcEEEEcCCCC-C-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCC-C-cccEEEeCCCcccC-
Q 013217 168 FRPKLIIAGASAY-P-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF-K-YCDVVTTTTHKSLR- 235 (447)
Q Consensus 168 ~~~klii~~~~~~-~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~-~-~~Di~~~s~~K~l~- 235 (447)
.++++|+++++++ + + ..+ +++|.++|++||+++|+|++|. |+...+... ... + ..|++++ +|+++
T Consensus 189 ~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~~~~g~~~~~~~~~~~~~di~t~--sK~l~~ 265 (430)
T 3i4j_A 189 ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS-GMGRCGSPLALSRWSGVTPDIAVL--GKGLAA 265 (430)
T ss_dssp GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTTCCCSEEEE--CGGGTT
T ss_pred CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhhhhcCCCCcEEEE--cccccC
Confidence 3567777765443 2 2 344 8999999999999999999974 443222110 001 1 2467765 49985
Q ss_pred C-CCCceEEeecCCcchhhHHHHhhhc---cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH-
Q 013217 236 G-PRGGMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE- 310 (447)
Q Consensus 236 G-p~gG~i~~~~~~~~~~~~~~~i~~~---~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 310 (447)
| .|.|++++++ ++.+.+... ...+...+.+....++..++++.+..+ ++.+++.++.+++++.|.+
T Consensus 266 G~~r~G~~~~~~------~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~ 336 (430)
T 3i4j_A 266 GYAPLAGLLAAP------QVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVERE---DLTGAAKERGAQLLAGLQAL 336 (430)
T ss_dssp TSSCCEEEEECH------HHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHH
T ss_pred CccccEEEEECH------HHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHH
Confidence 4 6679999987 787777653 111122233455555555577755432 3455666666666666654
Q ss_pred ----CCcEeeeCCCCCeeEEecCCCC--------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCC
Q 013217 311 ----LGYKLVSGGSDNHLVLVDLRPM--------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG 378 (447)
Q Consensus 311 ----~g~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g 378 (447)
.++..+.+ . ..++++++... .....++.+.|.++||.+.....+. .+..++.+|++++...+
T Consensus 337 ~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--~~~~~~~iRi~~~~~~t-- 410 (430)
T 3i4j_A 337 QARFPQMMQVRG-T-GLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAE--PNGRGDHLLLGPPLSIT-- 410 (430)
T ss_dssp HHHCTTEEEEEE-E-TTEEEEEEC------------CHHHHHHHHHHTTEECC-------------CEEEECCCTTCC--
T ss_pred HHhCCCeEEEEE-E-EEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEeccccc--CCCCCCEEEEECCCCCC--
Confidence 23433332 1 23445554321 1113567888889999986431111 11224579999887777
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 013217 379 FSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 379 ~~~~di~~l~~~i~~~l~~ 397 (447)
+++++++++.|+++++.
T Consensus 411 --~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 411 --AAEVDGLLALLAGALED 427 (430)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
No 204
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.84 E-value=9.6e-20 Score=186.47 Aligned_cols=340 Identities=14% Similarity=0.101 Sum_probs=200.1
Q ss_pred CeeEecCCCC-CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCC--CC-CccceeeecCCcH-
Q 013217 22 SLELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DE-NKWGVNVQPLSGS- 96 (447)
Q Consensus 22 ~i~l~~~~n~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~--~~-~~~~~~v~~~sGs- 96 (447)
.++|..+++. .++.+.+++...+.. .+||... +.. ...+..++.++.+.++. +. +. .+|.+++|+
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~~---~~Y~~~~--g~~---~lr~~ia~~~~~~~~~~~~~~~~~--~~I~~t~G~~ 175 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGILG---CNYPVPP--RML---NISEKIVRQYIIREMGADAIPSES--VNLFAVEGGT 175 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHT---CSCCSSS--SCC---HHHHHHHHHHHHHHTTCTTSCGGG--EEEEEEEHHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhhc---CCCCCCc--CCH---HHHHHHHHHHHHHhccCCCCCCCc--ceEEEECCHH
Confidence 3455445553 356666666655432 2444431 111 23444455555665543 11 00 245567887
Q ss_pred HHHHHHHHH-----hcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCC-CCCCCHHHHHHHhhhhCC
Q 013217 97 PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRP 170 (447)
Q Consensus 97 ~a~~~~~~a-----l~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~~~~~~~ 170 (447)
+++..++.+ +++|||+|++.+|.|.++.. .+.+.+.+.++++++++++ ++.+|+++|++++.. ++
T Consensus 176 eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~ 246 (546)
T 2zy4_A 176 AAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIE--------IPELAQYALEEVAINADPSLNWQYPDSELDKLKDP-AI 246 (546)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHH--------HHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST-TE
T ss_pred HHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHH--------HHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC-CC
Confidence 888888877 57999999999998876532 1112333346666666543 467999999987755 88
Q ss_pred cEEEEcCCCCCC--CCC---hHHHHHHH--HHhCCEEEEehhhhccccccccCCCCC---CcccEEEeCCCccc--CCCC
Q 013217 171 KLIIAGASAYPR--DFD---YPRMRQIA--DAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPR 238 (447)
Q Consensus 171 klii~~~~~~~~--~~~---~~~i~~ia--~~~g~~livD~a~~~g~~~~~~~~~~~---~~~Di~~~s~~K~l--~Gp~ 238 (447)
++|+++.++||+ ..+ +++|.++| +++|+++|+|+++. ++... ..+.. +..++++.|++|++ +|.|
T Consensus 247 k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~-~~~~~--~~s~~~~~~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 247 KIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG-TFADD--FQSLFAICPENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp EEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG-GGSTT--CCCHHHHCGGGEEEEEESTTTTTCGGGC
T ss_pred eEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch-hhccc--CcCHHHhCCCCEEEEEeCccccCCCCcc
Confidence 999988888886 555 56778888 77899999999975 33321 11111 13568899999987 4778
Q ss_pred CceEEeecCCcchhhHHHHhhhcc-----------------------------------CCCCCCCCcHHHHHHHHH-HH
Q 013217 239 GGMIFFKKDPVLGVELESAINNAV-----------------------------------FPGLQGGPHNHTIGGLAV-CL 282 (447)
Q Consensus 239 gG~i~~~~~~~~~~~~~~~i~~~~-----------------------------------~~~~~g~p~~~~~aal~~-al 282 (447)
.|+++++++ ++.+.+.... ......+.+.....+++. ++
T Consensus 324 iG~~~~~~~-----~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~ 398 (546)
T 2zy4_A 324 LGVVAAHQQ-----NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSL 398 (546)
T ss_dssp EEEEEEESS-----CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHH
T ss_pred eEEEEECCH-----HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHH
Confidence 899999873 2544442100 001111222222222210 11
Q ss_pred -HHhcC-hhH-HHHHHHHHHHHHHHHHHHHHCCcEeeeCCCCCeeEEecCCCC---------------CC-CHHHHHHHH
Q 013217 283 -KHAQS-PEF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM---------------GI-DGARVEKIL 343 (447)
Q Consensus 283 -~~~~~-~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~---------------~~-~~~~~~~~L 343 (447)
..+.. ..+ ++..+.+.++.+.+.+.|. .++.+. ++..++++|+++... +. +...+.+.|
T Consensus 399 ~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll 476 (546)
T 2zy4_A 399 FALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRD-ENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIA 476 (546)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCC-TTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccC-CCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHH
Confidence 11111 223 4555666667777777764 344322 223456667776310 01 234567788
Q ss_pred hhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217 344 DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL 399 (447)
Q Consensus 344 ~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~ 399 (447)
.++||.+..+...+. ..+++|+++.. .+ +++++++++.|++++....
T Consensus 477 ~~~gV~v~pG~~F~~----~~~~iRis~~~-~~----~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 477 DETGIVLLPGRGFGS----NRPSGRASLAN-LN----EYEYAAIGRALRKMADELY 523 (546)
T ss_dssp HHHSCCCEESSCTTC----SSCEEEEESSS-SC----HHHHHHHHHHHHHHHHHHH
T ss_pred HHCCEEEeCccccCC----CCCeEEEEecc-CC----HHHHHHHHHHHHHHHHHHH
Confidence 899999965432221 24679999853 23 8999999999999887653
No 205
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.84 E-value=2.4e-19 Score=178.21 Aligned_cols=191 Identities=19% Similarity=0.153 Sum_probs=130.8
Q ss_pred eEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHH
Q 013217 24 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 103 (447)
Q Consensus 24 ~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~ 103 (447)
.+..+.++..+.+.++...+ .+. ..|+...|+ +++...+++ +++++++|.+. .+.++||++|+..++
T Consensus 24 pi~~~~~~~~~~~~~~~~~~-~~~-~~~~~y~~~--~~~~~~~l~----~~la~~~g~~~-----~v~~~sGt~A~~~~l 90 (421)
T 2ctz_A 24 PIYPTTSYVFKSPEHAANLF-ALK-EFGNIYSRI--MNPTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLAL 90 (421)
T ss_dssp CBCCCSCBCCSCHHHHHHHH-TTT-TGGGSCBTT--BCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHH
T ss_pred CeeccceeeeCCHHHHHHhh-ccc-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----eEEecCHHHHHHHHH
Confidence 44556666655555543322 111 123433333 234445555 67889999873 245689999999999
Q ss_pred HHhcCCCCEEEEecCCCCcccCCCccccccccccccceeEEEec-ccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC
Q 013217 104 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 182 (447)
Q Consensus 104 ~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~ 182 (447)
.+++++||+|++..+.|++...... ......|. +++.+ +.+ |++++++++++ +|++|++.+++|++
T Consensus 91 ~~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~~~------d~~~l~~~i~~-~~~~v~~~~~~n~~ 157 (421)
T 2ctz_A 91 TTLAQAGDNIVSTPNLYGGTFNQFK----VTLKRLGI--EVRFTSREE------RPEEFLALTDE-KTRAWWVESIGNPA 157 (421)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHH----THHHHTTC--EEEECCTTC------CHHHHHHHCCT-TEEEEEEESSCTTT
T ss_pred HHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCC--EEEEECCCC------CHHHHHHhhcc-CCeEEEEECCCCCC
Confidence 9999999999999998877643210 00123343 55554 332 89999999987 89999998777764
Q ss_pred --CCChHHHHHHHHHhCCEEEEehhh-hccccccccCCCCCC-cccEEEeCCCcccCCCCC--ceEEee
Q 013217 183 --DFDYPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRG--GMIFFK 245 (447)
Q Consensus 183 --~~~~~~i~~ia~~~g~~livD~a~-~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~Gp~g--G~i~~~ 245 (447)
..|+++|.++|+++|+++++|++| +.|... .++. ++|++++|+||+++||.+ |++++.
T Consensus 158 G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~-----~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 158 LNIPDLEALAQAAREKGVALIVDNTFGMGGYLL-----RPLAWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred CcccCHHHHHHHHHHcCCEEEEECCcccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 789999999999999999999999 776421 1222 489999999999987553 544443
No 206
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.83 E-value=3.4e-21 Score=189.21 Aligned_cols=310 Identities=8% Similarity=0.028 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccceeeecCCcH-HHHHHHHHHh---cCCCCEEEEecCCCCcccCCCcccccccccccc
Q 013217 64 IDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 139 (447)
Q Consensus 64 ~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs-~a~~~~~~al---~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 139 (447)
...+|+....++.+++|++...-+ +.++.+| .++.+++.+. ..+++.|+++.-.|.+.+ +.+.+.|
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~~~~~--~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~--------kAl~l~G 165 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHSVASC--FVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMVTAG 165 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEE--EEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCceE--EEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH--------HHHHHcC
Confidence 446777777889999999854321 2234444 3444333333 224899998876665543 3556777
Q ss_pred ceeEEEecccCCCCCCCCHHHHHHHhhhhC---CcEEEEcCCCCC--CCCChHHHHHHHHHhCCEEEEehhhhccccccc
Q 013217 140 IYFESMPYRLDESTGLVDYDMLEKTAILFR---PKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAAS 214 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~---~klii~~~~~~~--~~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~ 214 (447)
.....++...+.+.+.+|+++|+++++++. +-+|+.+.+.|+ ...|+++|+++|++||+|++||+||...+....
T Consensus 166 l~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~ 245 (450)
T 3bc8_A 166 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCM 245 (450)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHH
T ss_pred CeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhH
Confidence 655544433333567899999999998743 233444455554 378999999999999999999999875433221
Q ss_pred cCC-CCC--CcccEEEeCCCcccCCCCC-ceEEeecCCcchhhHHHHhhhccCCCCC-CCCcHHHHHHHHHHHHHhcChh
Q 013217 215 VVA-DPF--KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQ-GGPHNHTIGGLAVCLKHAQSPE 289 (447)
Q Consensus 215 ~~~-~~~--~~~Di~~~s~~K~l~Gp~g-G~i~~~~~~~~~~~~~~~i~~~~~~~~~-g~p~~~~~aal~~al~~~~~~~ 289 (447)
..+ ..+ .++|+++.|+|||+..|-+ ++++++++ +..+.+... +++.+ ++|. ..++.++......+
T Consensus 246 ~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~-----~~~~~~~~~-~~g~~s~Sps----L~l~~~l~~~G~~g 315 (450)
T 3bc8_A 246 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISKM-YPGRASASPS----LDVLITLLSLGCSG 315 (450)
T ss_dssp HHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHHH-SCSCBCSHHH----HHHHHHHHHHHHHH
T ss_pred hHHHHHhcccCCCEEEECCccCCCchhccEEEEecCH-----HHHHHHHHH-hhcCCcccHH----HHHHHHHHHHHHHH
Confidence 111 112 3699999999999999977 66666653 555555443 33332 2232 23344444444456
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-C---CcEeeeCCCCCe-eEEecCCCC----CCCHHHHHHHHhhcC---eEEccC----
Q 013217 290 FKVYQNKVVSNCRALASRLVE-L---GYKLVSGGSDNH-LVLVDLRPM----GIDGARVEKILDMAS---ITLNKN---- 353 (447)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~L~~-~---g~~~~~~~~~~~-~~~v~~~~~----~~~~~~~~~~L~~~g---I~v~~~---- 353 (447)
+.+.+++..++++++++.|.+ . |++++... .+. -..+++... ..+...+.-.+...| ..+...
T Consensus 316 ~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~-~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~ 394 (450)
T 3bc8_A 316 YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTP-HNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQ 394 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCT-TCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCc-cCCCcceeecccccccccCCCceeEEEecCCCCccceeeeccccc
Confidence 777788889999999999876 3 77766421 111 111222111 223334444443333 222200
Q ss_pred -----CCC--C-CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 354 -----SVP--G-DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 354 -----~~p--~-~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
... + ...-....+|=+- .+.|.+++|++++.+.|+++....
T Consensus 395 ~~~~~~l~~~gi~~E~~~~~~i~~~----~sig~~~~di~~l~~~L~~~~~~~ 443 (450)
T 3bc8_A 395 TVSGHTFRGFMSHADNYPCAYLNAA----AAIGMKMQDVDLFIKRLDKCLNIV 443 (450)
T ss_dssp EETTEEEETTTTTSSCCSSCEEEEE----CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCeeecCCCCcEEEE----ecCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 0 0011112344443 345667999999999999987644
No 207
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.83 E-value=1.9e-18 Score=173.48 Aligned_cols=325 Identities=12% Similarity=0.018 Sum_probs=197.9
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--- 108 (447)
.+|.|.+++.+.+... .... ..++ ..+...+ .+++++++++...+. .+.++||++|+..++..+..
T Consensus 92 ~~p~v~~A~~~~~~~~-~~~~-~~~~--~~~~~~~----L~e~la~~~~~~~~~---v~~~~sGseA~~~Alk~a~~~~~ 160 (457)
T 3tfu_A 92 GHPALDQALTTQLRVM-NHVM-FGGL--THEPAAR----LAKLLVDITPAGLDT---VFFSDSGSVSVEVAAKMALQYWR 160 (457)
T ss_dssp TCHHHHHHHHHHHHHC-SCCC-SSSE--ECHHHHH----HHHHHHHHSSTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cCcc-cccc--CCHHHHH----HHHHHHHhCCCCcCE---EEEeCcHHHHHHHHHHHHHHHHH
Confidence 4899999998877642 1111 0111 1222233 346888999765442 23357788999999887764
Q ss_pred ----CCC-EEEEecCCCCcccCCC------ccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEE
Q 013217 109 ----PHD-RIMGLDLPHGGHLSHG------FMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIA 175 (447)
Q Consensus 109 ----pgd-~Vl~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~--~~~klii~ 175 (447)
+|+ +|++.++.|.|..... .................++++.+ .....|+++|++++++ .++++|++
T Consensus 161 ~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~d~~~le~~l~~~~~~~aavi~ 239 (457)
T 3tfu_A 161 GRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR-DYDPAYSAAFEAQLAQHAGELAAVVV 239 (457)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS-SCCHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred hcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc-ccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 554 8888887765532000 00000000000011233333322 1123589999999873 36788888
Q ss_pred cC-CCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCcccCC--CCCceE
Q 013217 176 GA-SAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRG--PRGGMI 242 (447)
Q Consensus 176 ~~-~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l~G--p~gG~i 242 (447)
.+ .++++ ..+ +++|+++|++||+++|+|++| .|+...+.. ..+. ..|++++ +|.|+| ++.|++
T Consensus 240 ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~gr~G~~-~a~~~~~~~pdiit~--sK~l~gG~~~lG~v 315 (457)
T 3tfu_A 240 EPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIA-TGFGRTGAL-FAADHAGVSPDIMCV--GKALTGGYLSLAAT 315 (457)
T ss_dssp CSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSS-STHHHHTCCCSEEEE--CGGGGTTSSCCEEE
T ss_pred eCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCc-cCCccccch-hHhHhcCCCceEEEE--ChhhhCCCcceEEE
Confidence 76 55443 333 899999999999999999996 444322211 0111 2577754 599976 588999
Q ss_pred EeecCCcchhhHHHHhhh---c-cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----CcE
Q 013217 243 FFKKDPVLGVELESAINN---A-VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYK 314 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~---~-~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 314 (447)
++++ ++.+.+.. . ...+...+.+....++..++++.+..++ +.+++.++.+++.+.|.+. ++.
T Consensus 316 ~~~~------~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~ 386 (457)
T 3tfu_A 316 LCTA------DVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQD---WRTRITELAAGLTAGLDTARALPAVT 386 (457)
T ss_dssp EEEH------HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHGGGGGSTTEE
T ss_pred EEcH------HHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 9988 77777742 1 1111222335555555556777665443 4667777888888888763 232
Q ss_pred eeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHH
Q 013217 315 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 315 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~ 394 (447)
.+.+ ...+.++++.. ..+..++.+.|.++||.++. . ...+|++++...+ ++|+++++++|+++
T Consensus 387 ~vr~--~G~~~~i~l~~-~~~~~~~~~~l~~~Gv~v~~----~------~~~lRi~p~~~~t----~eei~~~l~~L~~~ 449 (457)
T 3tfu_A 387 DVRV--CGAIGVIECDR-PVDLAVATPAALDRGVWLRP----F------RNLVYAMPPYICT----PAEITQITSAMVEV 449 (457)
T ss_dssp EEEE--CSSCEEEEESS-CCCHHHHHHHHHHTTEECCC----B------TTEEEECCCTTCC----HHHHHHHHHHHHHH
T ss_pred eeec--CCeEEEEEECC-cccHHHHHHHHHHCCeEEEe----c------CCEEEEECCCCCC----HHHHHHHHHHHHHH
Confidence 2222 23345666643 23567888888889999853 1 2589999887777 99999999999998
Q ss_pred HHHH
Q 013217 395 VEIT 398 (447)
Q Consensus 395 l~~~ 398 (447)
+...
T Consensus 450 l~~~ 453 (457)
T 3tfu_A 450 ARLV 453 (457)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8743
No 208
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.83 E-value=8.6e-18 Score=168.65 Aligned_cols=331 Identities=13% Similarity=0.023 Sum_probs=191.8
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 107 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---- 107 (447)
.+|.|.+++...+.+. ++... ....+...+ .+++++++++.+.+ + +.++||++|+..++..+.
T Consensus 66 ~~p~v~~A~~~~~~~~---~~~~~--~~~~~~~~~----la~~l~~~~~~~~~-v---~~~~ggseA~~~al~~~~~~~~ 132 (452)
T 3n5m_A 66 GRKELAEAAYKQLQTL---SYFPM--SQSHEPAIK----LAEKLNEWLGGEYV-I---FFSNSGSEANETAFKIARQYYA 132 (452)
T ss_dssp CCHHHHHHHHHHHTTC---CCCCT--TSEEHHHHH----HHHHHHHHHTSCEE-E---EEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc---CCccc--ccCCHHHHH----HHHHHHHhCCCCce-E---EEeCchHHHHHHHHHHHHHHHH
Confidence 3799999998877542 11111 112222333 34678888886653 2 335777899999998876
Q ss_pred -C---CCCEEEEecCCCCcccCC-----CccccccccccccceeEEEecccCCCC---------CCCCHHHHHHHhh---
Q 013217 108 -K---PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRLDEST---------GLVDYDMLEKTAI--- 166 (447)
Q Consensus 108 -~---pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~id~~~l~~~~~--- 166 (447)
. ++|+|++.++.|.|.... +.........-....+..++.+..... +..++++|+++++
T Consensus 133 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 212 (452)
T 3n5m_A 133 QKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL 212 (452)
T ss_dssp TTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred hcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence 5 889999999887654210 000000000000001122221110000 0112899999987
Q ss_pred hhCCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCCCcccC-C
Q 013217 167 LFRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTTHKSLR-G 236 (447)
Q Consensus 167 ~~~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~~K~l~-G 236 (447)
..++++|+++++ ++++ ..+ +++|+++|++||+++|+|++|. |+...+.. ... .+ ..|++++ +|+++ |
T Consensus 213 ~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t~--sK~l~~G 289 (452)
T 3n5m_A 213 SETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVIC-GFGRTGKAFGFMNYDVKPDIITM--AKGITSA 289 (452)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEE--CGGGGTT
T ss_pred CCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcccccchhhhcCCCCCEEee--cccccCC
Confidence 236788888865 3455 454 8999999999999999999974 43222211 000 11 2577765 48874 5
Q ss_pred -CCCceEEeecCCcchhhHHHHhhh----c-cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013217 237 -PRGGMIFFKKDPVLGVELESAINN----A-VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE 310 (447)
Q Consensus 237 -p~gG~i~~~~~~~~~~~~~~~i~~----~-~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 310 (447)
++.|++++++ ++.+.+.. . ...+...+.+...+++..++++.+..+ ++.+++.++.+++++.|.+
T Consensus 290 ~~~ig~~~~~~------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~ 360 (452)
T 3n5m_A 290 YLPLSATAVKR------EIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENE---NLIERSAQMGSLLLEQLKE 360 (452)
T ss_dssp SSCCEEEEEEH------HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEECH------HHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH
Confidence 5669999988 78777743 1 111222233455555555577765432 3456677777777777765
Q ss_pred C--C---cEeeeCCCCCeeEEecCCCCCC-----C---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217 311 L--G---YKLVSGGSDNHLVLVDLRPMGI-----D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 377 (447)
Q Consensus 311 ~--g---~~~~~~~~~~~~~~v~~~~~~~-----~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~ 377 (447)
. . +..+.+ . ..++++++..... + ..++.+.|.++||.+.....+. +...+.||++++..++
T Consensus 361 ~~~~~~~~~~~~~-~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~---~~~~~~iRi~~~~~~t- 434 (452)
T 3n5m_A 361 EIGEHPLVGDIRG-K-GLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT---AGYNNILTLAPPLVIS- 434 (452)
T ss_dssp HHTTCTTEEEEEE-S-SSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS---TTCCCEEEECCCTTCC-
T ss_pred HHhcCCCeEEEEE-E-EEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc---CCCCCEEEEECCCCCC-
Confidence 2 2 222222 2 2233444421110 1 2357777888999997543221 1125689999887777
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 013217 378 GFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 378 g~~~~di~~l~~~i~~~l~ 396 (447)
++|++++++.|+++++
T Consensus 435 ---~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 435 ---SEEIAFVIGTLKTAME 450 (452)
T ss_dssp ---HHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 9999999999988874
No 209
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.83 E-value=1e-18 Score=174.62 Aligned_cols=321 Identities=15% Similarity=0.082 Sum_probs=191.8
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-CccceeeecCCcHHHHHHHHHHh--cC
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYTAI--LK 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~~sGs~a~~~~~~al--~~ 108 (447)
.+|.+.+++.+.+... ..|... .+..+...+ .+++++++++... +. .+.+++|++|+..++.++ ..
T Consensus 60 ~~p~v~~a~~~~~~~~--~~~~~~--~~~~~~~~~----l~~~la~~~~~~~~~~---v~~~~ggsea~~~al~~~~~~~ 128 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANP--AGATIL--SASNAPAVT----LAERLLASFPGEGTHK---IWFGHSGSDANEAAYRAIVKAT 128 (439)
T ss_dssp SCHHHHHHHHHHHHSC--SCSCSS--SSEEHHHHH----HHHHHHHTTTCTTTEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cCcccc--ccCCHHHHH----HHHHHHHhCCCCCCCE---EEEeCCHHHHHHHHHHHHHHHh
Confidence 5899999998877542 122211 122232333 3468888886544 32 244577889999998875 34
Q ss_pred CCCEEEEecCCCCcccCCCcccccccccccccee------------EEEecccCCCCCCC-----CHHHHHHHhh---hh
Q 013217 109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF------------ESMPYRLDESTGLV-----DYDMLEKTAI---LF 168 (447)
Q Consensus 109 pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~~~~i-----d~~~l~~~~~---~~ 168 (447)
++++|++.++.+.+.... .+...+... .+..++.+ +.+.. |+++|+++++ ..
T Consensus 129 ~~~~vi~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~ 200 (439)
T 3dxv_A 129 GRSGVIAFAGAYHGCTVG-------SMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTEKLAAVPAG 200 (439)
T ss_dssp SCCEEEEETTCCCCSSHH-------HHCC-------------CEEEECCCCSSS-CBTTBTTSHHHHHHHHHHHHTSCTT
T ss_pred CCCEEEEECCCCCCCcHH-------HHhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHHHHHHHHHHHHhcCCC
Confidence 678888888776443211 011111100 11112221 11112 7999999984 33
Q ss_pred CCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCC-CC-cccEEEeCCCcccC-CCC
Q 013217 169 RPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP-FK-YCDVVTTTTHKSLR-GPR 238 (447)
Q Consensus 169 ~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~-~~-~~Di~~~s~~K~l~-Gp~ 238 (447)
++++|++.+++++ + ..+ +++|.++|++||+++|+|++|. |+...+. .... .. ..|++ |++|+++ |.|
T Consensus 201 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~r 277 (439)
T 3dxv_A 201 SIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLP 277 (439)
T ss_dssp CEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSC
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCCEE--EEcchhcCCcc
Confidence 6788888754433 3 556 8999999999999999999985 5432221 1100 11 25777 5569885 567
Q ss_pred CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----C-c
Q 013217 239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----G-Y 313 (447)
Q Consensus 239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~ 313 (447)
.|++++++ ++.+.+......+.. .+...+++..++++.+.. +++.+++.++.+++.+.|.+. + +
T Consensus 278 iG~~~~~~------~~~~~~~~~~~~~t~--~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 346 (439)
T 3dxv_A 278 LSAVIAPA------EILDCASAFAMQTLH--GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLSELAKRHPLI 346 (439)
T ss_dssp CEEEEEEH------HHHTSCSSSSCCTTT--TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred eEEEEECH------HHHhhhcCCCcCCCc--ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 79999988 677766654222222 344455555556665433 234666777777777777652 2 2
Q ss_pred EeeeCCCCCeeEEecCC-------CCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217 314 KLVSGGSDNHLVLVDLR-------PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA 386 (447)
Q Consensus 314 ~~~~~~~~~~~~~v~~~-------~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~ 386 (447)
....+ ...++++++. +...+..++.+.|.++||.+..+ . ..++.+|++++..++ ++|+++
T Consensus 347 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~---~~~~~iRi~~~~~~t----~e~i~~ 413 (439)
T 3dxv_A 347 GDIRG--RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYV----G---MNGNVLEFTPPLTIT----ETDIHK 413 (439)
T ss_dssp EEEEE--ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEE----S---TTSCEEEECCCTTCC----HHHHHH
T ss_pred EEEEE--EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeec----C---CCCCEEEEECCCCCC----HHHHHH
Confidence 22222 2334455442 11123456777888889998643 1 123689999887777 999999
Q ss_pred HHHHHHHHHHHH
Q 013217 387 IADFIHEGVEIT 398 (447)
Q Consensus 387 l~~~i~~~l~~~ 398 (447)
+.+.|++++...
T Consensus 414 ~l~~l~~~l~~~ 425 (439)
T 3dxv_A 414 ALDLLDRAFSEL 425 (439)
T ss_dssp HHHHHHHHHHTG
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 210
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.83 E-value=4.3e-18 Score=169.79 Aligned_cols=331 Identities=15% Similarity=0.073 Sum_probs=193.4
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--CC
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 109 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~p 109 (447)
.+|.|.+++...+... . +....| . .+...++ +++++++++.+.+.+ +.+++|++|+..++..+. ..
T Consensus 60 ~~p~v~~a~~~~~~~~-~--~~~~~~-~-~~~~~~l----~~~la~~~~~~~~~v---~~~~gg~ea~~~a~~~~~~~~~ 127 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKL-D--HLFSEM-L-SRPVVDL----ATRLANITPPGLDRA---LLLSTGAESNEAAIRMAKLVTG 127 (433)
T ss_dssp TCHHHHHHHHHHHHHC-C--CCCTTC-C-CHHHHHH----HHHHHHHSCTTCCEE---EEESCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC-c--cccccc-C-CHHHHHH----HHHHHHhCCCCcCEE---EEeCchHHHHHHHHHHHHHhhC
Confidence 3899999998877542 1 111111 1 1222333 357888898765432 334667799999887653 34
Q ss_pred CCEEEEecCCCCcccCCCc----cccccccccccceeEEEecccCCC---------CCCCCHHHHHHHhhh---hCCcEE
Q 013217 110 HDRIMGLDLPHGGHLSHGF----MTPKRRVSGTSIYFESMPYRLDES---------TGLVDYDMLEKTAIL---FRPKLI 173 (447)
Q Consensus 110 gd~Vl~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~---------~~~id~~~l~~~~~~---~~~kli 173 (447)
+|+|++.++.|.|...... .............+..++++.... .+.+|+++|++++++ .++++|
T Consensus 128 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v 207 (433)
T 1zod_A 128 KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAF 207 (433)
T ss_dssp CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEE
Confidence 6899999987754321000 000000000001233443321100 112579999999874 366788
Q ss_pred EEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCCCcccC-CCCCceEE
Q 013217 174 IAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTTHKSLR-GPRGGMIF 243 (447)
Q Consensus 174 i~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~~K~l~-Gp~gG~i~ 243 (447)
++++.+++ + ..+ +++|.++|++||+++|+|++|. |+...+.. ... .. ..|++ |++|+|+ |.|.|+++
T Consensus 208 i~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~ 284 (433)
T 1zod_A 208 IAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIV 284 (433)
T ss_dssp EECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEE
T ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCchHhHHhhcCCCCCEE--EecccccCCCCeeEEE
Confidence 87754443 4 344 8999999999999999999985 33222210 000 01 24666 4559985 45669999
Q ss_pred eecCCcchhhHHHHhhhccCC-CCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----C-cEeee
Q 013217 244 FKKDPVLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----G-YKLVS 317 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~~~~-~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~ 317 (447)
+++ ++.+.+...... +...+.+....++..++++.+.+.+ +.+++.++++++.+.|++. + +..+.
T Consensus 285 ~~~------~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 355 (433)
T 1zod_A 285 TSA------AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVR 355 (433)
T ss_dssp ECH------HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred EhH------HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 987 777777653211 1112234555555556777654333 4566777788888877652 2 22222
Q ss_pred CCCCCeeEEecCCCC-------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHH
Q 013217 318 GGSDNHLVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 390 (447)
Q Consensus 318 ~~~~~~~~~v~~~~~-------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~ 390 (447)
+ ...++++++... .....++.+.|.++||.+..+ .... .++.+|++++..++ ++|++++++.
T Consensus 356 ~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~~~-~~~~lRi~~~~~~t----~~~i~~~l~~ 424 (433)
T 1zod_A 356 G--RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIV----QLPG-MGGVFRIAPPLTVS----EDEIDLGLSL 424 (433)
T ss_dssp E--ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEE----CCTT-SCCEEEECCCTTCC----HHHHHHHHHH
T ss_pred E--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEecc----CCCC-CCCEEEEECCcCCC----HHHHHHHHHH
Confidence 2 233456665321 123566888888899998643 2111 13689999887777 9999999999
Q ss_pred HHHHHHH
Q 013217 391 IHEGVEI 397 (447)
Q Consensus 391 i~~~l~~ 397 (447)
|++++..
T Consensus 425 l~~~l~~ 431 (433)
T 1zod_A 425 LGQAIER 431 (433)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 211
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.82 E-value=9.6e-19 Score=172.40 Aligned_cols=216 Identities=18% Similarity=0.136 Sum_probs=147.6
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCCCCEEEEecCCCCcccCCCccccccc-cccc
Q 013217 60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGT 138 (447)
Q Consensus 60 g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~-~~~~ 138 (447)
+++...++| +++++++|.+. .+.++||++|+.+ +.++++|||+|++.++.|++.+.... .. +...
T Consensus 65 ~~p~~~~l~----~~la~l~g~~~-----~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~~ 130 (400)
T 3nmy_A 65 HNPTRFAYE----RCVAALEGGTR-----AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFE----RVRRRTA 130 (400)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHH----HTHHHHH
T ss_pred CCHHHHHHH----HHHHHHhCCCC-----EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHH----HhhHhhc
Confidence 455666676 57888999763 3456899999887 67789999999999998876532110 00 1112
Q ss_pred cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccC
Q 013217 139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 216 (447)
Q Consensus 139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~ 216 (447)
|. +++.++. .|++++++++++ +|++|++.+++||+ ..|+++|+++|+++|+++++|++|..+...
T Consensus 131 g~--~~~~v~~------~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~---- 197 (400)
T 3nmy_A 131 GL--DFSFVDL------TDPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ---- 197 (400)
T ss_dssp CC--EEEEECT------TSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC----
T ss_pred Ce--EEEEECC------CCHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence 43 4445433 289999999987 89999998777775 779999999999999999999998755432
Q ss_pred CCCCC-cccEEEeCCCcccCCC---CCc-eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217 217 ADPFK-YCDVVTTTTHKSLRGP---RGG-MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291 (447)
Q Consensus 217 ~~~~~-~~Di~~~s~~K~l~Gp---~gG-~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~ 291 (447)
.|+. ++|+++.|+||+|+|+ .|| +++++++ ++.+++....... .++++... .+.+++.+. .+.
T Consensus 198 -~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~-----~~~~~l~~~~~~~-g~~~~~~~---a~~~l~~l~--~l~ 265 (400)
T 3nmy_A 198 -RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNA-----ELAEQMAFLQNSI-GGVQGPFD---SFLALRGLK--TLP 265 (400)
T ss_dssp -CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCH-----HHHHHHHHHHHHH-CCBCCHHH---HHHHHHHHT--THH
T ss_pred -ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCH-----HHHHHHHHHHHhc-CCCCCHHH---HHHHHHhHh--HHH
Confidence 2333 5899999999999876 457 5666553 5666554322111 11222222 122333332 356
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CcE
Q 013217 292 VYQNKVVSNCRALASRLVEL-GYK 314 (447)
Q Consensus 292 ~~~~~~~~~~~~l~~~L~~~-g~~ 314 (447)
.++++..+|++.+.+.|++. .+.
T Consensus 266 ~r~~~~~~~a~~l~~~L~~~p~v~ 289 (400)
T 3nmy_A 266 LRMRAHCENALALAQWLETHPAIE 289 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEe
Confidence 67888999999999999873 444
No 212
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.82 E-value=1.7e-17 Score=166.84 Aligned_cols=330 Identities=12% Similarity=0.038 Sum_probs=191.1
Q ss_pred CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC----
Q 013217 33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 108 (447)
Q Consensus 33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---- 108 (447)
+|.|.+++.+.+.+. ...++...+ ..+...+ ..++++++++.+.+. .+..+||++|+..++.++..
T Consensus 69 ~p~v~~A~~~~~~~~-~~~~~~~~~--~~~~~~~----la~~l~~~~~~~~~~---v~~~~gGseA~~~al~~~~~~~~~ 138 (460)
T 3gju_A 69 RQKIADAIATQAKNL-AYYHAYVGH--GTEASIT----LAKMIIDRAPKGMSR---VYFGLSGSDANETNIKLIWYYNNV 138 (460)
T ss_dssp CHHHHHHHHHHHHHH-SCCCCCTTC--CCHHHHH----HHHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-ccccccccc--CCHHHHH----HHHHHHhhCCCCcCE---EEEeCchHHHHHHHHHHHHHHHHh
Confidence 799999988777542 112221111 1222223 346788887665542 23356778999999988763
Q ss_pred ----CCCEEEEecCCCCcccCC-----CccccccccccccceeEEEeccc--CCCCCCCC--------HHHHHHHhhh--
Q 013217 109 ----PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL-- 167 (447)
Q Consensus 109 ----pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~id--------~~~l~~~~~~-- 167 (447)
++++|++.++.|.|.... +...+..........+..++++. ..++...| +++|++++++
T Consensus 139 ~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~ 218 (460)
T 3gju_A 139 LGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG 218 (460)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC
Confidence 568999999887554210 00000000001111223333222 10111233 6889988863
Q ss_pred -hCCcEEEEcCCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCC-CC-cccEEEeCCCcccCC-
Q 013217 168 -FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP-FK-YCDVVTTTTHKSLRG- 236 (447)
Q Consensus 168 -~~~klii~~~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~-~~-~~Di~~~s~~K~l~G- 236 (447)
.++++|++.++++++ ..+ +++|+++|++||+++|+|++|. |+...+. .... .+ ..|++++| |+|+|
T Consensus 219 ~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~l~gG 295 (460)
T 3gju_A 219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT-GFGRLGTMFGSDHYGIKPDLITIA--KGLTSA 295 (460)
T ss_dssp GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEEC--GGGTTT
T ss_pred CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeeee--hhhcCC
Confidence 356788887554443 344 8999999999999999999974 4422221 0000 01 24777655 99976
Q ss_pred -CCCceEEeecCCcchhhHHHHhhh------ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217 237 -PRGGMIFFKKDPVLGVELESAINN------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV 309 (447)
Q Consensus 237 -p~gG~i~~~~~~~~~~~~~~~i~~------~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 309 (447)
+|.|++++++ ++.+.+.. ....+...+.+....++..++++.+..++ +.+++.++.+++++.|.
T Consensus 296 ~~~lg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~ 366 (460)
T 3gju_A 296 YAPLSGVIVAD------RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMD---LVTNAGETGAYFRAELA 366 (460)
T ss_dssp SSCCEEEEEEH------HHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECH------HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH
Confidence 6789999988 77777742 11222222334555555556777654333 35555666666666653
Q ss_pred H----CC-cEeeeCCCCCeeEEecCCCCC----------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCcc
Q 013217 310 E----LG-YKLVSGGSDNHLVLVDLRPMG----------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM 374 (447)
Q Consensus 310 ~----~g-~~~~~~~~~~~~~~v~~~~~~----------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~ 374 (447)
+ .+ +..+.+ . ..++++.+.... ....++.+.|.++||.+... . ..+.+|++++..
T Consensus 367 ~~l~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~----~~~~iRi~~~~~ 436 (460)
T 3gju_A 367 KAVGGHKNVGEVRG-D-GMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAM----P----QGDILGFAPPLC 436 (460)
T ss_dssp HHHTTSTTEEEEEE-E-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEC----S----SSCEEEECCCTT
T ss_pred HHHhcCCCeEEEee-e-eEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecC----C----CCCEEEEECCCC
Confidence 3 22 322222 1 223444443211 01456778888899988642 1 135899998877
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 375 TTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 375 ~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
++ ++|++++++.|+++++..
T Consensus 437 ~t----~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 437 LT----REQADIVVSKTADAVKSV 456 (460)
T ss_dssp CC----HHHHHHHHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHHHHHHH
Confidence 77 999999999999988753
No 213
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.82 E-value=5.1e-19 Score=171.38 Aligned_cols=310 Identities=12% Similarity=0.097 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcCC---C-CEEEEecCCCCcccCCCccccccccccccc
Q 013217 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP---H-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 140 (447)
Q Consensus 65 ~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~p---g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 140 (447)
..-+..+.+|++.+ |.+...-.+.| ..+|.++.+++++.+++ | |+|+++...|.+.+ +.+.+.|.
T Consensus 116 ~ltn~l~ld~L~~~-G~~~~~~~flV--nGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~--------kAliL~Gl 184 (501)
T 3hl2_A 116 KITNSLVLDIIKLA-GVHTVANCFVV--PMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMITAGF 184 (501)
T ss_dssp HHHHHHHHHHHHHT-TCTTCCEEEEE--SSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHHHTTC
T ss_pred HHHHHHHHHHHHHc-CCCCCCcEEEE--CcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH--------HHHHHcCC
Confidence 34455677888877 99854221222 33345666666666553 4 99999877665543 35567777
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCCc--EEEEc-CCCC-CC-CCChHHHHHHHHHhCCEEEEehhhhcccccccc
Q 013217 141 YFESMPYRLDESTGLVDYDMLEKTAILFRPK--LIIAG-ASAY-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASV 215 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~k--lii~~-~~~~-~~-~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~ 215 (447)
....++...+++...+|+++|+++++++.++ ++++. .+.| |+ +.|+++|+++|++||++++||+||.+.+.....
T Consensus 185 ~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~ 264 (501)
T 3hl2_A 185 EPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMH 264 (501)
T ss_dssp EEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHH
T ss_pred eEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhh
Confidence 5555554444455789999999999886333 33333 4555 33 579999999999999999999998765533211
Q ss_pred CC-CCCC-c-ccEEEeCCCcccCCCCCc-eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHH
Q 013217 216 VA-DPFK-Y-CDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291 (447)
Q Consensus 216 ~~-~~~~-~-~Di~~~s~~K~l~Gp~gG-~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~ 291 (447)
.+ ..+. + +|+++.|+||++..|-|| +++++++ ++.+++.. .+|+.++ ......++.++..+...+|+
T Consensus 265 lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~-----e~l~~~~~-~yPGr~S---~Spsldl~~tLL~lGr~Gy~ 335 (501)
T 3hl2_A 265 LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND-----SFIQEISK-MYPGRAS---ASPSLDVLITLLSLGSNGYK 335 (501)
T ss_dssp HHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHH-TSCSCBC---SHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcEEEecccccceeecCceEEEeCCH-----HHHHHHHH-hCCCCCC---CcHHHHHHHHHHHHHHHHHH
Confidence 11 1112 4 999999999999888775 4446664 66666644 4565542 22234455566667778899
Q ss_pred HHHHHHHHHHHHHHHHHHH----CCcEeeeCCCCCeeE-EecCCCCC----CCHHHHHHHHhhcCeEEccCCCCCC----
Q 013217 292 VYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLV-LVDLRPMG----IDGARVEKILDMASITLNKNSVPGD---- 358 (447)
Q Consensus 292 ~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~-~v~~~~~~----~~~~~~~~~L~~~gI~v~~~~~p~~---- 358 (447)
+++++..+++++|++.|++ .|-+++.. ..|.+. -+++...+ ....++-..|-.++|.-.....+++
T Consensus 336 ~ll~e~~ela~~L~~~L~~la~~~ge~ll~~-~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i 414 (501)
T 3hl2_A 336 KLLKERKEMFSYLSNQIKKLSEAYNERLLHT-PHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTV 414 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCBCCC-TTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhcCC-CCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEE
Confidence 9999999999999999987 45555542 224332 23443221 1233555666665553211101111
Q ss_pred -----------CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 013217 359 -----------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL 399 (447)
Q Consensus 359 -----------~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~~ 399 (447)
...+...++-+. ...||+++|++.+.+.|++++....
T Consensus 415 ~g~~f~~~g~h~~~~~~~yl~~a----~aiG~~~~~v~~~~~~l~~~~~~~~ 462 (501)
T 3hl2_A 415 SGYTFRGFMSHTNNYPCAYLNAA----SAIGMKMQDVDLFIKRLDRCLKAVR 462 (501)
T ss_dssp TTEEESSTTTTSSCCSSCEEEEE----CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeecCcccCCCCCCchHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 011222344443 3468899999999999999998764
No 214
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.82 E-value=2.8e-17 Score=165.77 Aligned_cols=328 Identities=11% Similarity=0.002 Sum_probs=196.1
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--- 108 (447)
.+|.|.+|+.+.+.+ +..+++. . +..+...++ .++++++++.+.+. .+.++||++|+..++..+..
T Consensus 71 ~~p~v~~A~~~~l~~-~~~~~~~-~--~~~~~~~~l----a~~l~~~~~~~~~~---v~~~~sGseA~~~Aik~a~~~~~ 139 (476)
T 3i5t_A 71 GRREIVDAMAHQAMV-LPYASPW-Y--MATSPAARL----AEKIATLTPGDLNR---IFFTTGGSTAVDSALRFSEFYNN 139 (476)
T ss_dssp CCHHHHHHHHHHHHH-CCCCCTT-T--CBCHHHHHH----HHHHHTTSSTTCCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccCcccC-c--cCCHHHHHH----HHHHHhcCCCCcCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence 489999999887764 2222221 1 122323333 36888888755442 23457888999999888753
Q ss_pred -----CCCEEEEecCCCCcccCC-----CccccccccccccceeEEEecccCCCCCCCC--------HHHHHHHhhh---
Q 013217 109 -----PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRLDESTGLVD--------YDMLEKTAIL--- 167 (447)
Q Consensus 109 -----pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id--------~~~l~~~~~~--- 167 (447)
.+++|++.++.|.|.... +...++.........+..++++........| +++|++++++
T Consensus 140 ~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 219 (476)
T 3i5t_A 140 VLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP 219 (476)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG
T ss_pred hcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 367999998887554210 0000000000001112333322211111122 7899988864
Q ss_pred hCCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-C-CCC-cccEEEeCCCcccCC-
Q 013217 168 FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-D-PFK-YCDVVTTTTHKSLRG- 236 (447)
Q Consensus 168 ~~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~-~~~-~~Di~~~s~~K~l~G- 236 (447)
.++++|++.+++++ + ..+ +++|+++|++||+++|+|++|. |+...+.. . . ..+ ..|++++| |+++|
T Consensus 220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G 296 (476)
T 3i5t_A 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT-GFGRCGEWFASEKVFGVVPDIITFA--KGVTSG 296 (476)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTT
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccCceeeecccCCCcchhhhh--hhhcCC
Confidence 35678888754443 3 343 8999999999999999999984 44322211 0 0 111 25788765 99864
Q ss_pred -CCCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217 237 -PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV 309 (447)
Q Consensus 237 -p~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 309 (447)
.+.|++++++ ++.+.+... ...+...+.+...+++..++++.+..+ ++.+++.++.+++.+.|+
T Consensus 297 ~~plg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~ 367 (476)
T 3i5t_A 297 YVPLGGLAISE------AVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMERE---GIVDQAREMADYFAAALA 367 (476)
T ss_dssp SSCCEEEEECH------HHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred CcCeEEEEECH------HHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Confidence 5779999987 787777643 122222233555555555677765433 346777888888888887
Q ss_pred HCC----cEeeeCCCCCeeEEecCCCCCC----------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217 310 ELG----YKLVSGGSDNHLVLVDLRPMGI----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 375 (447)
Q Consensus 310 ~~g----~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~ 375 (447)
+.+ +..+.+ . ..++.+++..... ....+.+.|.++||.+... .+.+|++++..+
T Consensus 368 ~l~~~~~v~~v~~-~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g~~iRi~p~l~~ 435 (476)
T 3i5t_A 368 SLRDLPGVAETRS-V-GLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL----------GDLCVISPPLII 435 (476)
T ss_dssp TTTTSTTEEEEEE-E-TTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE----------TTEEEECCCTTC
T ss_pred HHhcCCCeEEEEe-c-CceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec----------CCEEEEECCCCC
Confidence 632 222221 1 2234455543211 1346777788889998541 258999988777
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 013217 376 TRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 376 ~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+ ++|++++++.|++++...
T Consensus 436 t----~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 436 S----RAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp C----HHHHHHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHHHHHH
Confidence 7 999999999999998765
No 215
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.82 E-value=9.4e-19 Score=172.79 Aligned_cols=333 Identities=15% Similarity=0.134 Sum_probs=194.3
Q ss_pred cCeeEecC-------CCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCC-Cccceeeec
Q 013217 21 KSLELIAS-------ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQP 92 (447)
Q Consensus 21 ~~i~l~~~-------~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~-~~~~~~v~~ 92 (447)
..++|-.+ ..++.|.|++|....+.+....+|+.. ....++.+.+.++ ++|-.. ..-...++.
T Consensus 45 ~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~------~G~p~lr~aia~~---~~g~~~~~~~~~~~qt 115 (420)
T 4h51_A 45 PKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPI------SGYQPFIDEAVKI---IYGNTVELENLVAVQT 115 (420)
T ss_dssp SCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCT------TCCHHHHHHHHHH---HHC---CGGGEEEEEE
T ss_pred CCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCc------CChHHHHHHHHHH---hcCCCccccccceeee
Confidence 45888655 235679999998776655433344443 2233454333333 344331 111134556
Q ss_pred CCcHHHHHHHHH----HhcCCCCEEEEecCCCCcccCCCccccccccccccce-eEEEecccCCCCCCCCHHHHHHHhhh
Q 013217 93 LSGSPANFEVYT----AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDESTGLVDYDMLEKTAIL 167 (447)
Q Consensus 93 ~sGs~a~~~~~~----al~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~id~~~l~~~~~~ 167 (447)
.+||.|+..++. ++++|||+|++++|.++.|.. .+...|.. +...++ .+++++.+|++.+.+.+..
T Consensus 116 ~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~--------i~~~aG~~~V~~~~~-~~~~~~~~d~~~~~~~l~~ 186 (420)
T 4h51_A 116 LSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYG--------VVKAAGWKNICTYAY-YDPKTVSLNFEGMKKDILA 186 (420)
T ss_dssp EHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHH--------HHHHTTCCCEEEEEC-EEGGGTEECHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHH--------HHHHcCCeEEEeecc-ccccccCCCHHHHHHHHhc
Confidence 667766655443 346799999999999887642 23445542 222232 3345678999999887764
Q ss_pred h--CCcEEEEcCCCCCC--CC---ChHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC--------cccEEEeCCCc
Q 013217 168 F--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--------YCDVVTTTTHK 232 (447)
Q Consensus 168 ~--~~klii~~~~~~~~--~~---~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~--------~~Di~~~s~~K 232 (447)
. ++++++++.++||+ .. .+++|.++|+++++++++|+++ .|+.+.+....+.. ..-+++.|++|
T Consensus 187 ~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 265 (420)
T 4h51_A 187 APDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAY-QGYASGSLDTDAYAARLFARRGIEVLLAQSFSK 265 (420)
T ss_dssp SCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred cCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhh-hhhccCCcccchHHHHhHHhhCceEEEEecccc
Confidence 2 45666777788886 33 4689999999999999999984 66665432211110 12377899999
Q ss_pred cc--CCCCCceEEeecCCc-chhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHH-----hcChhHHHHHHHHHHHHHHH
Q 013217 233 SL--RGPRGGMIFFKKDPV-LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-----AQSPEFKVYQNKVVSNCRAL 304 (447)
Q Consensus 233 ~l--~Gp~gG~i~~~~~~~-~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~-----~~~~~~~~~~~~~~~~~~~l 304 (447)
++ .|+|.|++++..+.. ....+...+....... .+.|..+.....+..+.. ......+.+.+++.+.++.|
T Consensus 266 ~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~-~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l 344 (420)
T 4h51_A 266 NMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREE-YTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTV 344 (420)
T ss_dssp TSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCceEEEEecccCHHHHHHHHHHHHHhhhcc-cCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 689999998876411 0001111121111122 233444333333323221 01123456677888889999
Q ss_pred HHHHHHCCcE----eeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCC
Q 013217 305 ASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS 380 (447)
Q Consensus 305 ~~~L~~~g~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~ 380 (447)
.+.|++.|.. .+.. ....+.++ +++.+++ ++|+++||.+ +| + -||++..+ +
T Consensus 345 ~~~L~~~g~~~~~~~i~~-q~GmF~~~-----gls~e~v-~~L~e~~Vy~----~~--------~-gRis~Agl-----~ 399 (420)
T 4h51_A 345 YDELLRLQTPGSWEHVIN-QIGMFSFL-----GLSKAQC-EYCQNHNIFI----TV--------S-GRANMAGL-----T 399 (420)
T ss_dssp HHHHHHTTCSSCCTHHHH-CCSSEEEC-----CCCHHHH-HHHHHTTEEC----CT--------T-CEEEGGGC-----C
T ss_pred HHHHHHhCCCCCCCeecC-CCceEEec-----CcCHHHH-HHHHhCCEEE----cC--------C-CEEEeccC-----C
Confidence 9999886532 2221 12333333 4455555 5788999986 22 1 28886543 4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013217 381 EKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 381 ~~di~~l~~~i~~~l~~~ 398 (447)
++.|++++++|+++++..
T Consensus 400 ~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 400 HETALMLAQTINDAVRNV 417 (420)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 799999999999998754
No 216
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.81 E-value=1.8e-17 Score=166.20 Aligned_cols=320 Identities=13% Similarity=0.042 Sum_probs=184.5
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--- 108 (447)
.+|.|.+++...+.+. ..++ .. .+..+...++ .++++++++...+. .+.++||++|+..++..+..
T Consensus 61 ~~p~v~~A~~~~~~~~-~~~~-~~--~~~~~~~~~l----a~~l~~~~~~~~~~---v~~~~sGseA~~~al~~~~~~~~ 129 (448)
T 3dod_A 61 RKKELDDAIKKQLGKI-AHST-LL--GMTNVPATQL----AETLIDISPKKLTR---VFYSDSGAEAMEIALKMAFQYWK 129 (448)
T ss_dssp SCHHHHHHHHHHHTTC-SCCC-CS--SSEEHHHHHH----HHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cCcc-cc--ccCCHHHHHH----HHHHHHhCCCCCCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence 4799999998877542 1111 11 1222333333 36788888655432 23457788999999988765
Q ss_pred -CC----CEEEEecCCCCcccCCCccccccccccccce----------eEEEecccCCCCCC-----------CCHHHHH
Q 013217 109 -PH----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGL-----------VDYDMLE 162 (447)
Q Consensus 109 -pg----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~-----------id~~~l~ 162 (447)
+| |+|++.++.|.|..... +...+.. ..+..++.+ +.+. .|+++|+
T Consensus 130 ~~G~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le 201 (448)
T 3dod_A 130 NIGKPEKQKFIAMKNGYHGDTIGA-------VSVGSIELFHHVYGPLMFESYKAPIP-YVYRSESGDPDECRDQCLRELA 201 (448)
T ss_dssp HTTCTTCCEEEEEC------------------------------------CEEECCC-CCTTSSSCCHHHHHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCCCccHHH-------HHhcCCccccccccCCCCCceEeCCC-ccccCCccchhhhhHHHHHHHH
Confidence 45 99999998875542111 1111110 011111111 1111 2589999
Q ss_pred HHhhh--hCCcEEEEcCC--CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CCC-CC-cccEEEeCC
Q 013217 163 KTAIL--FRPKLIIAGAS--AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTT 230 (447)
Q Consensus 163 ~~~~~--~~~klii~~~~--~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~~-~~-~~Di~~~s~ 230 (447)
++++. .++++|++.+. ++++ ..+ +++|+++|++||+++|+|++|. |+...+.. ... .+ ..|++++|
T Consensus 202 ~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t~s- 279 (448)
T 3dod_A 202 QLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT-GFGRTGKMFACEHENVQPDLMAAG- 279 (448)
T ss_dssp HHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC-
T ss_pred HHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccchhhhhhcCCCCCEEEec-
Confidence 98872 35677777754 3333 333 8999999999999999999974 43322211 100 11 25777654
Q ss_pred CcccC-C-CCCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 013217 231 HKSLR-G-PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR 302 (447)
Q Consensus 231 ~K~l~-G-p~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~ 302 (447)
|+++ | .+.|++++++ ++.+.+... ...+...+.+....++..++++.+..+ ++.+++.++.+
T Consensus 280 -K~l~~G~~~ig~v~~~~------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~ 349 (448)
T 3dod_A 280 -KGITGGYLPIAVTFATE------DIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESE---NIVEQVAEKSK 349 (448)
T ss_dssp -GGGGTTSSCCEEEEEEH------HHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHH
T ss_pred -ccccCCcCceEEEEECH------HHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcc---cHHHHHHHHHH
Confidence 9985 4 3779999988 787777541 112222233455555555677765433 34566666677
Q ss_pred HHHHHHHH---CC-cEeeeCCCCCeeEEecCCCCCCC----------HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEE
Q 013217 303 ALASRLVE---LG-YKLVSGGSDNHLVLVDLRPMGID----------GARVEKILDMASITLNKNSVPGDKSALVPGGIR 368 (447)
Q Consensus 303 ~l~~~L~~---~g-~~~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iR 368 (447)
++++.|.+ .+ +..+.+ ...++++.+.....+ ..++.+.|.++||.+.. + .+.+|
T Consensus 350 ~~~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~----~------~~~iR 417 (448)
T 3dod_A 350 KLHFLLQDLHALPHVGDIRQ--LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRP----L------GDVIA 417 (448)
T ss_dssp HHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCE----E------TTEEE
T ss_pred HHHHHHHHHhcCCCeEEEEe--eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEec----c------CCEEE
Confidence 77776665 22 221211 123455555331100 35677888889999843 2 25899
Q ss_pred EecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 369 IGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 369 ig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
++++..++ ++|++++++.|++++...
T Consensus 418 i~~~~~~t----~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 418 FLPPLAST----AEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp ECCCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCC----HHHHHHHHHHHHHHHHHH
Confidence 99887777 999999999999998754
No 217
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.81 E-value=1.8e-17 Score=165.34 Aligned_cols=314 Identities=13% Similarity=0.060 Sum_probs=185.4
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC--C
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P 109 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--p 109 (447)
.+|.|.+++...+.+....+|| .+...++ +++++++++ ..+. .+..+||++|+..++..+.. +
T Consensus 72 ~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~l----~~~la~~~~-~~~~---v~~~~sGsea~~~ai~~a~~~~~ 136 (434)
T 3l44_A 72 AHPHITKAITTAAENGVLYGTP-------TALEVKF----AKMLKEAMP-ALDK---VRFVNSGTEAVMTTIRVARAYTG 136 (434)
T ss_dssp TCHHHHHHHHHHHHHCSCCSSC-------CHHHHHH----HHHHHHHCT-TCSE---EEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcCCCCC-------CHHHHHH----HHHHHHhCC-CCCE---EEEeCchHHHHHHHHHHHHHhhC
Confidence 4899999998877653222222 1222233 357788886 4432 23357788999999887654 7
Q ss_pred CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCC-------------CCHHHHHHHhhhh--CCcEEE
Q 013217 110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDMLEKTAILF--RPKLII 174 (447)
Q Consensus 110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------id~~~l~~~~~~~--~~klii 174 (447)
+|+|++.++.|.+.... .+...|........+. ..+. .|+++|+++++++ ++++|+
T Consensus 137 ~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 207 (434)
T 3l44_A 137 RTKIMKFAGCYHGHSDL-------VLVAAGSGPSTLGTPD--SAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAIL 207 (434)
T ss_dssp CCEEEEETTCCCCSSGG-------GGBC-------CCCBS--STTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEE
T ss_pred CCEEEEEcCccCCCcHH-------HHhhcCCcccccCCCC--cCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEE
Confidence 89999998877554211 1111121100000000 0011 2899999998742 567777
Q ss_pred EcCCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC-C-CCC-cccEEEeCCCcccC-CCCCceEEe
Q 013217 175 AGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-D-PFK-YCDVVTTTTHKSLR-GPRGGMIFF 244 (447)
Q Consensus 175 ~~~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~-~~~-~~Di~~~s~~K~l~-Gp~gG~i~~ 244 (447)
++++++++ ..+ +++|.++|++||+++|+|++| .|+ ..+... . ... ..|++++ +|+++ |+|.|++++
T Consensus 208 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~-~g~-~~g~~~~~~~~~~~~di~t~--sK~~~~G~~iG~~~~ 283 (434)
T 3l44_A 208 VEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVI-TAF-RFMYGGAQDLLGVTPDLTAL--GKVIGGGLPIGAYGG 283 (434)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTT-TTT-TSSSSCHHHHHTCCCSEEEE--EGGGGTTSSCEEEEE
T ss_pred EcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cce-eccccHHHHHcCCCCCeeeh--hhhhcCCcCeeeEEE
Confidence 77544433 455 899999999999999999997 454 222110 0 001 2467655 49884 566799988
Q ss_pred ecCCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeC
Q 013217 245 KKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSG 318 (447)
Q Consensus 245 ~~~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~ 318 (447)
++ ++.+.+... ...+...+.+...+++..++++.+..+ ++.+++.++.+++++.|.+ .++.....
T Consensus 284 ~~------~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 354 (434)
T 3l44_A 284 KK------EIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQE---GLYEKLDELGATLEKGILEQAAKHNIDITLN 354 (434)
T ss_dssp CH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cH------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 87 777766542 112222334555556556677766543 3466677777777777765 34321111
Q ss_pred CCCCeeEEecCCCCCC------------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHH
Q 013217 319 GSDNHLVLVDLRPMGI------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA 386 (447)
Q Consensus 319 ~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~ 386 (447)
+ ...++++.+..... ...++.+.|.++||.+... . ...+|++ ..++ ++|+++
T Consensus 355 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-----~~~~rl~--~~~t----~e~i~~ 418 (434)
T 3l44_A 355 R-LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPS----K-----YEAWFLT--TEHT----KEDIEY 418 (434)
T ss_dssp E-ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSS----T-----TCCEECC--TTCC----HHHHHH
T ss_pred e-eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeec----C-----CCcEEEe--cccC----HHHHHH
Confidence 1 22344554432111 1255777888899998542 1 2368885 3444 999999
Q ss_pred HHHHHHHHHHHH
Q 013217 387 IADFIHEGVEIT 398 (447)
Q Consensus 387 l~~~i~~~l~~~ 398 (447)
++++|++++...
T Consensus 419 ~l~~l~~~l~~~ 430 (434)
T 3l44_A 419 TIEAVGRAFAAL 430 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 218
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.80 E-value=5e-17 Score=161.78 Aligned_cols=308 Identities=14% Similarity=0.048 Sum_probs=182.7
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 109 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p 109 (447)
.+|.|.+++...+......++ ..+... ...++++++++ +.+. .+.+++|++|+..++... ...
T Consensus 69 ~~p~v~~a~~~~~~~~~~~~~-------~~~~~~----~la~~l~~~~~-~~~~---v~~~~ggsea~~~al~~a~~~~~ 133 (427)
T 3fq8_A 69 AHPEVIEALKVAMEKGTSFGA-------PCALEN----VLAEMVNDAVP-SIEM---VRFVNSGTEACMAVLRIMRAYTG 133 (427)
T ss_dssp TCHHHHHHHHHHHTTCSCCSS-------CCHHHH----HHHHHHHHHST-TCSE---EEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCCcCC-------CCHHHH----HHHHHHHHhCC-CCCE---EEEeCCHHHHHHHHHHHHHHhhC
Confidence 489999999887754211111 122222 33467888887 4442 234567789999888432 234
Q ss_pred CCEEEEecCCCCcccCCCccccccccccccceeE-----------------EEecccCCCCCCCCHHHHHHHhhhh--CC
Q 013217 110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-----------------SMPYRLDESTGLVDYDMLEKTAILF--RP 170 (447)
Q Consensus 110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~~~~~~~~~id~~~l~~~~~~~--~~ 170 (447)
+++|++.++.|.|..... ....+.... ++.++. -|+++|+++++++ ++
T Consensus 134 ~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~ 200 (427)
T 3fq8_A 134 RDKIIKFEGCYHGHADMF-------LVKAGSGVATLGLPSSPGVPKKTTANTLTTPY------NDLEAVKALFAENPGEI 200 (427)
T ss_dssp CCEEEEEETCCCCSCGGG-------CSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET------TCHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCcCCCCHHH-------HHhcCCcccccCCCCCCCCCCcccCceeecCC------CCHHHHHHHHHhCCCCE
Confidence 578998888765542111 011111000 111111 1899999999764 56
Q ss_pred cEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCc
Q 013217 171 KLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGG 240 (447)
Q Consensus 171 klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG 240 (447)
++|++++++++ + ..+ +++|.++|++||+++|+|++|. |+ ..+... .... ..|++++| |+++ |.|.|
T Consensus 201 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~t~s--K~~~~G~~~G 276 (427)
T 3fq8_A 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVG 276 (427)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEEEEC--GGGGTTSSCE
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChhhhh--hhhhCCcceE
Confidence 78888754433 3 556 8999999999999999999984 55 322110 0011 24776555 9985 56789
Q ss_pred eEEeecCCcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcE
Q 013217 241 MIFFKKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYK 314 (447)
Q Consensus 241 ~i~~~~~~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~ 314 (447)
++++++ ++.+.+.... ..+...+.+...+++..++++.+..++ +.+++.++.+++.+.|.+ .++.
T Consensus 277 ~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ 347 (427)
T 3fq8_A 277 AYGGKR------EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDGLLAIAQETGHA 347 (427)
T ss_dssp EEEECH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcH------HHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998887 7777665421 111112335566666666777665433 456677777777777765 2332
Q ss_pred eeeCCCCCeeEEecCCCCCCC------------HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217 315 LVSGGSDNHLVLVDLRPMGID------------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK 382 (447)
Q Consensus 315 ~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~ 382 (447)
....+ ...+.++.+...... ..++.+.|.++||.+... . ..++| .+..++ ++
T Consensus 348 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~----~-----~~r~~--~~~~~t----~e 411 (427)
T 3fq8_A 348 ACGGQ-VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPS----Q-----FEAGF--TSLAHT----EE 411 (427)
T ss_dssp CEEEE-ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSS----T-----TSCEE--CCTTCC----HH
T ss_pred eEEEE-eeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecC----C-----CCCEE--eeCcCC----HH
Confidence 22111 133455555432221 346777888899998542 1 12344 444555 99
Q ss_pred HHHHHHHHHHHHHH
Q 013217 383 EFVAIADFIHEGVE 396 (447)
Q Consensus 383 di~~l~~~i~~~l~ 396 (447)
|++++++.|+++++
T Consensus 412 ~i~~~l~~l~~~l~ 425 (427)
T 3fq8_A 412 DIDATLAAARTVMS 425 (427)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 219
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.80 E-value=2.3e-17 Score=165.89 Aligned_cols=327 Identities=12% Similarity=0.036 Sum_probs=189.3
Q ss_pred CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC----
Q 013217 33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 108 (447)
Q Consensus 33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~---- 108 (447)
+|.|.+++.+.+.+. ..+++..++ ..+... ..+++++++++.+.+.+ +..+||++|+..++..+.+
T Consensus 68 ~p~v~~A~~~~~~~~-~~~~~~~~~--~~~~~~----~la~~l~~~~~~~~~~v---~~~~ggseA~~~al~~~~~~~~~ 137 (459)
T 4a6r_A 68 RKDFAEAARRQMEEL-PFYNTFFKT--THPAVV----ELSSLLAEVTPAGFDRV---FYTNSGSESVDTMIRMVRRYWDV 137 (459)
T ss_dssp CHHHHHHHHHHHHHC-SCCCTTSSS--CCHHHH----HHHHHHHHHSCTTCCEE---EEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-ccccccccc--CCHHHH----HHHHHHHHhCCCCCCEE---EEeCchHHHHHHHHHHHHHHHHh
Confidence 799999998877642 112222211 122222 33468888887765532 3346778999999988865
Q ss_pred ----CCCEEEEecCCCCcccCC-----CccccccccccccceeEEEeccc--CCCCCCCC--------HHHHHHHhhh--
Q 013217 109 ----PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL-- 167 (447)
Q Consensus 109 ----pgd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~id--------~~~l~~~~~~-- 167 (447)
++|+|++.++.|.|.... +..............+..++++. ....+ .| +++|++++.+
T Consensus 138 ~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~ 216 (459)
T 4a6r_A 138 QGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIG 216 (459)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcC
Confidence 579999999887654210 00000000000111123333222 00112 45 7889988864
Q ss_pred -hCCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCCC-CC-cccEEEeCCCcccCC-
Q 013217 168 -FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP-FK-YCDVVTTTTHKSLRG- 236 (447)
Q Consensus 168 -~~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~~-~~-~~Di~~~s~~K~l~G- 236 (447)
.++++|++.+.+++ + ..+ +++|+++|++||+++|+|++|. |+...+. .... .+ ..|++++| |+|+|
T Consensus 217 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg 293 (459)
T 4a6r_A 217 ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC-GFGRTGEWFGHQHFGFQPDLFTAA--KGLSSG 293 (459)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEEC--GGGGTT
T ss_pred CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeehh--hhhcCC
Confidence 35677777654333 3 444 8999999999999999999974 4432221 1000 01 25777665 99865
Q ss_pred -CCCceEEeecCCcchhhHHHHhhhc--cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH-HHHHHHHHHH-HH-
Q 013217 237 -PRGGMIFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCRALASRL-VE- 310 (447)
Q Consensus 237 -p~gG~i~~~~~~~~~~~~~~~i~~~--~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~-~~~~~l~~~L-~~- 310 (447)
.+.|++++++ ++.+.+... ...+...+.+....++..++++.+..++ +.+++. ++.+++++.| +.
T Consensus 294 ~~~lg~v~~~~------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~~l~~~l 364 (459)
T 4a6r_A 294 YLPIGAVFVGK------RVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEG---IVQRVKDDIGPYMQKRWRETF 364 (459)
T ss_dssp SSCCEEEEECH------HHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTC---HHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCccceeeCH------HHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHH
Confidence 6779999987 777766521 0111111224444455455677554333 345555 5666666666 33
Q ss_pred --C-CcEeeeCCCCCeeEEecCCCCCC----------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccC
Q 013217 311 --L-GYKLVSGGSDNHLVLVDLRPMGI----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 377 (447)
Q Consensus 311 --~-g~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~ 377 (447)
. .+..+.+ . ..++++++..... ...++.+.|.++||.+... .+.+|++++..++
T Consensus 365 ~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g~~iRi~~~~~~t- 431 (459)
T 4a6r_A 365 SRFEHVDDVRG-V-GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC----------GDHIVSAPPLVMT- 431 (459)
T ss_dssp TTCTTEEEEEE-E-TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE----------TTEEEECCCTTCC-
T ss_pred hcCCCeEEEEE-E-EEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC----------CCEEEEECCCCCC-
Confidence 2 2322222 1 2233444432110 1456778888899998642 1589999887777
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 013217 378 GFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 378 g~~~~di~~l~~~i~~~l~~~ 398 (447)
++|++++++.|++++...
T Consensus 432 ---~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 432 ---RAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 999999999999998754
No 220
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.80 E-value=2.1e-17 Score=166.43 Aligned_cols=321 Identities=14% Similarity=0.042 Sum_probs=192.8
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC---
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--- 108 (447)
.+|.|.+|+.+.+.+. ...+...++ ..+...++ .++++++++.+.+. .+..+||++|+..++..+..
T Consensus 72 ~~p~v~~A~~~~~~~~-~~~~~~~~~--~~~~~~~l----ae~l~~~~~~~~~~---v~~~~sGseA~~~aik~a~~~~~ 141 (472)
T 3hmu_A 72 GRDELAEVAARQMREL-PYYNTFFKT--THVPAIAL----AQKLAELAPGDLNH---VFFAGGGSEANDTNIRMVRTYWQ 141 (472)
T ss_dssp CCHHHHHHHHHHHHHC-SCCCSSSSE--ECHHHHHH----HHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-ccccccccc--CCHHHHHH----HHHHHHhCCCCCCE---EEEeCCHHHHHHHHHHHHHHHHH
Confidence 3799999998877642 112222221 12222333 36788888765432 23357788999999988764
Q ss_pred -----CCCEEEEecCCCCcccCCCccccccccccccc-----------eeEEEeccc--CCCCCCCC--------HHHHH
Q 013217 109 -----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------YFESMPYRL--DESTGLVD--------YDMLE 162 (447)
Q Consensus 109 -----pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~--~~~~~~id--------~~~l~ 162 (447)
++++|++.++.|.|... + .....+. .+..++++. ....+ .| +++|+
T Consensus 142 ~~g~~~~~~ii~~~~~yHg~t~-~------~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le 213 (472)
T 3hmu_A 142 NKGQPEKTVIISRKNAYHGSTV-A------SSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELE 213 (472)
T ss_dssp HTTCTTCCEEEEETTCCCCSSH-H------HHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEEcCcCCCccH-H------hhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHH
Confidence 56899999887655321 0 0011110 123333221 10111 34 78888
Q ss_pred HHhhh---hCCcEEEEcCCCCCC--CCC----hHHHHHHHHHhCCEEEEehhhhcccccccc-CCC-CCC-cccEEEeCC
Q 013217 163 KTAIL---FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD-PFK-YCDVVTTTT 230 (447)
Q Consensus 163 ~~~~~---~~~klii~~~~~~~~--~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~-~~~-~~~-~~Di~~~s~ 230 (447)
+++++ .++++|++.+.++++ ..+ +++|+++|+++|+++|+|++| .|+...+. ... ..+ ..|++++|
T Consensus 214 ~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~-~gfgr~G~~~a~~~~~v~pdi~t~s- 291 (472)
T 3hmu_A 214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVI-CGFGRTGNWFGTQTMGIRPHIMTIA- 291 (472)
T ss_dssp HHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSCHHHHHTCCCSEEEEC-
T ss_pred HHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc-cCCcccCccchhHHhCCCCceeeec-
Confidence 88863 256778887544333 444 899999999999999999997 44432221 000 001 25788765
Q ss_pred CcccCC--CCCceEEeecCCcchhhHHHHhhhcc-CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH-HHHHHHHH
Q 013217 231 HKSLRG--PRGGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCRALAS 306 (447)
Q Consensus 231 ~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~~-~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~-~~~~~l~~ 306 (447)
|+|+| ++.|++++++ ++.+.+.... ..+...+.+....++..++++.+..+ ++.+++. ++.+++++
T Consensus 292 -K~l~gg~~plG~v~~~~------~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~~l~~ 361 (472)
T 3hmu_A 292 -KGLSSGYAPIGGSIVCD------EVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEE---NILDHVRNVAAPYLKE 361 (472)
T ss_dssp -GGGTTTSSCCEEEEEEH------HHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHTHHHHHHH
T ss_pred -hhhhcCCcceEEEEECH------HHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHH
Confidence 99865 6779999988 7877774221 12222233445555555577765433 3466677 77788888
Q ss_pred HHHHC----CcEeeeCCCCCeeEEecCCCCCC-----------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEec
Q 013217 307 RLVEL----GYKLVSGGSDNHLVLVDLRPMGI-----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 371 (447)
Q Consensus 307 ~L~~~----g~~~~~~~~~~~~~~v~~~~~~~-----------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~ 371 (447)
.|++. ++..+.+ . ..++.+++..... ....+.+.|.++||.+... .+.||+++
T Consensus 362 ~L~~l~~~~~v~~vr~-~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g~~iRi~p 429 (472)
T 3hmu_A 362 KWEALTDHPLVGEAKI-V-GMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV----------GDRMIISP 429 (472)
T ss_dssp HHHGGGGSTTEEEEEE-E-TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE----------TTEEEECC
T ss_pred HHHHHhcCCCeEEEEe-c-CceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec----------CCEEEEEC
Confidence 88652 2222221 1 2234444432100 1456778888899988542 15899998
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 372 PAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 372 ~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
+...+ ++|+++++++|++++...
T Consensus 430 ~~~~t----~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 430 PLVIT----PAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp CTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCC----HHHHHHHHHHHHHHHHHH
Confidence 88777 999999999999998765
No 221
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.80 E-value=7.6e-18 Score=168.87 Aligned_cols=316 Identities=12% Similarity=0.065 Sum_probs=189.5
Q ss_pred CCHHHH-H-HHhh---hhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcC-CCCCccceeeecCCcHHHHHHHHHH
Q 013217 32 TSRAVM-E-AVGS---CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTA 105 (447)
Q Consensus 32 ~~~~v~-~-a~~~---~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g-~~~~~~~~~v~~~sGs~a~~~~~~a 105 (447)
.+|.|. + ++.. .+... . .+. .+| ..+...++ .++++++++ .+.+. .+.++||++|+..++..
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~-~-~~~-~~~--~~~~~~~l----a~~la~~~~~~~~~~---v~~~~~gseA~~~aik~ 138 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALN-K-PSN-SDV--YSVAMARF----VETFARVLGDPALPH---LFFVEGGALAVENALKA 138 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTC-C-CCT-TTC--CCHHHHHH----HHHHHHHHCCTTCCE---EEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhc-C-CCC-ccc--CCHHHHHH----HHHHHHhcCCCCCCE---EEEeCchHHHHHHHHHH
Confidence 479999 8 8887 55432 1 111 112 12222333 356888886 33432 23346778999988865
Q ss_pred hc---C----------C-CCEEEEecCCCCcccCCCccccccccccccc------ee-----EEEecccCCC-CC-----
Q 013217 106 IL---K----------P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------YF-----ESMPYRLDES-TG----- 154 (447)
Q Consensus 106 l~---~----------p-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~------~~-----~~~~~~~~~~-~~----- 154 (447)
+. + | ||+|+++++.|.|..... +...+. .+ .++.++.+.. ..
T Consensus 139 a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 211 (449)
T 2cjg_A 139 AFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT-------LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA 211 (449)
T ss_dssp HHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG-------GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHH
T ss_pred HHHHhcccccccccccCCCCEEEEECCCcCCcccch-------hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccc
Confidence 42 2 2 899999998876643211 111110 01 2333333310 11
Q ss_pred ---CCCHHHHHHHhhh--hCCcEEEEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC
Q 013217 155 ---LVDYDMLEKTAIL--FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK 221 (447)
Q Consensus 155 ---~id~~~l~~~~~~--~~~klii~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~ 221 (447)
..|+++|++++++ .++++|++++.+++ + ..+ +++|+++|++||+++|+|++|. |+...+.. . ...+
T Consensus 212 ~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~ 290 (449)
T 2cjg_A 212 ALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTAWAYQQLD 290 (449)
T ss_dssp HHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSTHHHHT
T ss_pred hhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcceeecccC
Confidence 2567779988863 36788888765443 4 456 8999999999999999999985 44332221 0 0001
Q ss_pred -cccEEEeCCCcccCCCCCceEEeecCCcchhhHHHHhhh----ccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHH
Q 013217 222 -YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN----AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 296 (447)
Q Consensus 222 -~~Di~~~s~~K~l~Gp~gG~i~~~~~~~~~~~~~~~i~~----~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~ 296 (447)
..|++++ +|+| +.|++++++ ++.+.+.. ....+...+.+....++..++++.+.++ ++.++
T Consensus 291 ~~~di~t~--sK~l---~iG~~~~~~------~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~---~~~~~ 356 (449)
T 2cjg_A 291 VAPDIVAF--GKKT---QVCGVMAGR------RVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAE---GLFER 356 (449)
T ss_dssp CCCSEEEE--CGGG---SSEEEEECG------GGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHH---THHHH
T ss_pred CCceEEEe--cCcc---cEEEEEECH------HHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhc---cHHHH
Confidence 2577755 4998 578888877 56554221 0111112233555555555677765432 34677
Q ss_pred HHHHHHHHHHHHHHC-----C-cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEe
Q 013217 297 VVSNCRALASRLVEL-----G-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIG 370 (447)
Q Consensus 297 ~~~~~~~l~~~L~~~-----g-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig 370 (447)
+.++.+++.+.|++. + +..+.+ ...++++++... .+..++.+.|.++||.+... ..+.+|++
T Consensus 357 ~~~~~~~l~~~L~~l~~~~~~~~~~~~~--~g~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~~---------g~~~iRi~ 424 (449)
T 2cjg_A 357 AVQHGKYLRARLDELAADFPAVVLDPRG--RGLMCAFSLPTT-ADRDELIRQLWQRAVIVLPA---------GADTVRFR 424 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTSEEEEE--ETTEEEEECSSH-HHHHHHHHHHHHTTEECEEE---------TTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhCCCceeeEee--ccEEEEEEECCh-HHHHHHHHHHHHCCeEEecC---------CCCEEEEE
Confidence 788888888888752 2 333322 233455676431 13456777787899998642 13589999
Q ss_pred cCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 371 SPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 371 ~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
++..++ ++|++++++.|++++..
T Consensus 425 ~~~~~t----~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 425 PPLTVS----TAEIDAAIAAVRSALPV 447 (449)
T ss_dssp CCTTCC----HHHHHHHHHHHHHHHHH
T ss_pred CCCCCC----HHHHHHHHHHHHHHHHH
Confidence 887777 99999999999988763
No 222
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.79 E-value=7.4e-18 Score=168.22 Aligned_cols=316 Identities=14% Similarity=0.083 Sum_probs=186.1
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 109 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p 109 (447)
.+|.|.+++.+.+.+....+| ..+...+ .+++++++++ ..+. .+.++||++|+.+++.+. +.+
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~-------~~~~~~~----l~~~la~~~~-~~~~---v~~~~sgseA~~~al~~ar~~~~ 137 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGA-------PGEAEVL----LAEKILGYVK-RGGM---IRFVNSGTEATMTAIRLARGYTG 137 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSS-------CCHHHHH----HHHHHHHHHC-TTCE---EEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------CCHHHHH----HHHHHHHhCC-CCCE---EEEeCCHHHHHHHHHHHHHHhhC
Confidence 579999999888765211111 1222233 3467788884 2332 234577889999988862 345
Q ss_pred CCEEEEecCCCCcccCCCccccccc------cccccce----eEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEEcC
Q 013217 110 HDRIMGLDLPHGGHLSHGFMTPKRR------VSGTSIY----FESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGA 177 (447)
Q Consensus 110 gd~Vl~~~~~~~~~~~~~~~~~~~~------~~~~g~~----~~~~~~~~~~~~~~id~~~l~~~~~~--~~~klii~~~ 177 (447)
+|+|++.++.|.+............ ....|.. ..++.++. .|+++|++++++ .++++|++++
T Consensus 138 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~ep 211 (434)
T 2epj_A 138 RDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY------NDVEALERVFAEYGDRIAGVIVEP 211 (434)
T ss_dssp CCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET------TCHHHHHHHHHHHGGGEEEEEECS
T ss_pred CCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC------CCHHHHHHHHHhCCCCEEEEEEeC
Confidence 6788888877655421110000000 0001110 01222221 489999999875 2677888875
Q ss_pred CCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccCC-CCCceEEeecC
Q 013217 178 SAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD 247 (447)
Q Consensus 178 ~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~ 247 (447)
.++ ++ ..+ +++|.++|++||+++|+|++|. |+ ..+.. . ..++ ..|++ |++|++++ .++|++++++
T Consensus 212 ~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~- 286 (434)
T 2epj_A 212 VIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF-RLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSR- 286 (434)
T ss_dssp SBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT-TSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECH-
T ss_pred CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce-eCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecH-
Confidence 433 34 567 9999999999999999999986 65 22210 0 0001 25776 45599854 5789999987
Q ss_pred CcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----CcEeeeCCCC
Q 013217 248 PVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSD 321 (447)
Q Consensus 248 ~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~ 321 (447)
++.+.+.... ..+...+.+...+++..++++.+.++ ++.+++.++.+++.+.|++. ++.....+ .
T Consensus 287 -----~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~ 357 (434)
T 2epj_A 287 -----EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEE---PVYSVSREAAKALEEAASEVLDRTGLPYTINR-V 357 (434)
T ss_dssp -----HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE-E
T ss_pred -----HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-e
Confidence 6777665411 11111134555555656677765432 34677778888888888663 55321111 2
Q ss_pred CeeEEecCCCCC------------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHH
Q 013217 322 NHLVLVDLRPMG------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD 389 (447)
Q Consensus 322 ~~~~~v~~~~~~------------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~ 389 (447)
..++++.+.... ....++.+.|.++||.+..+ . ..++|++ ..++ ++|++++++
T Consensus 358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-----~~~~~~~--~~~t----~e~i~~~l~ 422 (434)
T 2epj_A 358 ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPS----N-----LEAVFTG--LPHQ----GEALEIAVE 422 (434)
T ss_dssp TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSS----T-----TSCEECC--TTCS----HHHHHHHHH
T ss_pred eeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEecc----C-----CCcEEEe--ccCC----HHHHHHHHH
Confidence 345666664311 12456778888899998542 1 1246654 3444 999999999
Q ss_pred HHHHHHHH
Q 013217 390 FIHEGVEI 397 (447)
Q Consensus 390 ~i~~~l~~ 397 (447)
.|++++..
T Consensus 423 ~l~~~l~~ 430 (434)
T 2epj_A 423 GLRSSLKT 430 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 223
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.78 E-value=1.3e-18 Score=171.21 Aligned_cols=278 Identities=13% Similarity=0.059 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHcCCC--CCccceeeecCCcH-HHHHHHHHHhcCCCC----EEEEecCCCCcccCCCcccccccccc
Q 013217 65 DELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSG 137 (447)
Q Consensus 65 ~~le~~~~~~~~~~~g~~--~~~~~~~v~~~sGs-~a~~~~~~al~~pgd----~Vl~~~~~~~~~~~~~~~~~~~~~~~ 137 (447)
.++++.+.+++. ..|.+ +++ +|.+|+|+ +++..++.++++||| +|++.+|.|.++.. .+..
T Consensus 71 ~~lr~aia~~~~-~~g~~~~~~~---~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~--------~~~~ 138 (391)
T 3bwn_A 71 PELEDAIKDLHG-VVGNAATEDR---YIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVE--------ETTY 138 (391)
T ss_dssp HHHHHHHHHHHH-HHCSBCCSSS---EEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHH--------HHHT
T ss_pred HHHHHHHHHHHH-hcCCCCCCCC---eEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHH--------HHHH
Confidence 455544444444 33443 321 34558887 899999999999999 99999998876532 2334
Q ss_pred ccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhcccccccc
Q 013217 138 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASV 215 (447)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~ 215 (447)
.|. +++.+++|.++ ++ .+ ++|+|++++++||+ ..+ +|++.++.+++++|+|++|+.+.
T Consensus 139 ~g~--~~~~~~~d~~~--l~--------~~-~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~----- 198 (391)
T 3bwn_A 139 VRS--GMYKWEGDAWG--FD--------KK-GPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH----- 198 (391)
T ss_dssp TCB--TTEEEEEESTT--CC--------CC-SCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT-----
T ss_pred cCC--eEEEecCCHHH--cC--------CC-CCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC-----
Confidence 454 33444454322 22 13 78999888888886 433 44332222239999999986321
Q ss_pred CCCCC---CcccEEEeCCCccc--CCCCCceEEe-ecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc---
Q 013217 216 VADPF---KYCDVVTTTTHKSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--- 286 (447)
Q Consensus 216 ~~~~~---~~~Di~~~s~~K~l--~Gp~gG~i~~-~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~--- 286 (447)
..++ ...+++++|+||++ +|.|.|++++ ++ ++.+.+........ .+++.....++..+++...
T Consensus 199 -~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~------~l~~~l~~~~~~~~-~~~~~~~q~a~~~~l~~~~~~~ 270 (391)
T 3bwn_A 199 -YTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDK------EVAKKMVEYIIVNS-IGVSKESQVRTAKILNVLKETC 270 (391)
T ss_dssp -TSCCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCH------HHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHT
T ss_pred -CCccccCCCCeEEEEechhhcCCCccceEEEEecCH------HHHHHHHHHhcccc-cCCCHHHHHHHHHHHhCcchhc
Confidence 1122 24679999999986 4777899997 55 66666654322111 2334444444555666432
Q ss_pred ------ChhHHHHHHHHHHHHHHHHHHHHHC-CcEeeeC-CC-----------CCeeEEecCCCCCCCHHHHHHHHhhcC
Q 013217 287 ------SPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG-GS-----------DNHLVLVDLRPMGIDGARVEKILDMAS 347 (447)
Q Consensus 287 ------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~-----------~~~~~~v~~~~~~~~~~~~~~~L~~~g 347 (447)
....++..+.+.++++.+.+.|++. |+++..+ ++ ...++|+++.. .+.+.+.|+++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~----~~~~~~~l~~~g 346 (391)
T 3bwn_A 271 KSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE----ETDLVSELRRHK 346 (391)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS----SCCHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc----HHHHHHHHHHCC
Confidence 3345777888889999999999885 6665431 11 11256777653 245778888999
Q ss_pred eEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHH
Q 013217 348 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 348 I~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~ 396 (447)
|.+..+...+. ..+++|+++.. + +++++++++.|.++++
T Consensus 347 V~v~pg~~fg~----~~~~iRis~~~--~----~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 347 VMSRAGERCGS----DKKHVRVSMLS--R----EDVFNVFLERLANMKL 385 (391)
T ss_dssp EECEEGGGGTC----CTTEEEEESCS--C----HHHHHHHHHHHHSCC-
T ss_pred EEEccCCCCCC----CCCEEEEEecC--C----HHHHHHHHHHHHHHHH
Confidence 99976533321 24689999762 4 8899999998877654
No 224
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.78 E-value=6.5e-17 Score=161.11 Aligned_cols=311 Identities=14% Similarity=0.079 Sum_probs=184.2
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhcC--C
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P 109 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~~--p 109 (447)
.+|.|.+++...+.+....+|| .+...++ +++++++++ ..+. .+.++||++|+..++..+.. +
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~l----~~~la~~~~-~~~~---v~~~~~Gsea~~~ai~~a~~~~~ 134 (429)
T 3k28_A 70 ANDRVVEALKAVAERGTSFGAP-------TEIENKL----AKLVIERVP-SIEI---VRMVNSGTEATMSALRLARGYTG 134 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSC-------CHHHHHH----HHHHHHHST-TCSE---EEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhCcCcCCC-------CHHHHHH----HHHHHHhCC-CCCE---EEEeCChHHHHHHHHHHHHHhhC
Confidence 4899999998877653211222 2222333 357777875 3332 23457788999998877653 6
Q ss_pred CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCC-------------CCHHHHHHHhhhh--CCcEEE
Q 013217 110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDMLEKTAILF--RPKLII 174 (447)
Q Consensus 110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------id~~~l~~~~~~~--~~klii 174 (447)
+++|++.++.|.|..... +...|.......++. ..+. -|+++++++++++ ++++|+
T Consensus 135 ~~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 205 (429)
T 3k28_A 135 RNKILKFIGCYHGHGDSL-------LIKAGSGVATLGLPD--SPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVI 205 (429)
T ss_dssp CCEEEEEETCCCCSCGGG-------CSSCCTTC-----CC--CTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEE
T ss_pred CCEEEEECCCcCCCcHHH-------HHhcCCcccccCCCC--cCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEE
Confidence 789999888765442111 111111111111110 0011 1899999988742 567777
Q ss_pred EcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC-C-CCC-cccEEEeCCCcccC-CCCCceEEe
Q 013217 175 AGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-D-PFK-YCDVVTTTTHKSLR-GPRGGMIFF 244 (447)
Q Consensus 175 ~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~-~~~-~~Di~~~s~~K~l~-Gp~gG~i~~ 244 (447)
+.++++. + ..+ +++|.++|++||+++|+|++| .|+ ..+... . ..+ ..|++++ +|+++ |++.|++++
T Consensus 206 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~-~g~-~~g~~~~~~~~~~~~di~t~--sK~~~~G~~iG~~~~ 281 (429)
T 3k28_A 206 VEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVM-TGF-RVAYNCGQGYYGVTPDLTCL--GKVIGGGLPVGAYGG 281 (429)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTT-TSSTTHHHHHHTCCCSEEEE--CGGGGTTSCCEEEEE
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-ccc-ccCcchHHHHhCCCCceehh--hhhhcCCCCeEEEEE
Confidence 7754433 3 555 899999999999999999998 555 332110 0 001 2467654 59984 567799999
Q ss_pred ecCCcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----Cc-Eeee
Q 013217 245 KKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GY-KLVS 317 (447)
Q Consensus 245 ~~~~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~ 317 (447)
++ ++.+.+.... ..+...+.+...+++..++++... ++..+++.++.+++.+.|.+. ++ ..+.
T Consensus 282 ~~------~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 351 (429)
T 3k28_A 282 KA------EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHHIN 351 (429)
T ss_dssp CH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred cH------HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 87 7777665421 122223345555555555676543 456778888888888888662 22 1121
Q ss_pred CCCCCeeEEecCCCCCC------------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHH
Q 013217 318 GGSDNHLVLVDLRPMGI------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV 385 (447)
Q Consensus 318 ~~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~ 385 (447)
+ . ..++++.+..... ...++.+.|.++||.+..+ . .+.+|++ ..++ ++|++
T Consensus 352 ~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-----~~~~r~~--~~~t----~e~i~ 414 (429)
T 3k28_A 352 R-A-GSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPS----Q-----FEGLFLS--TVHS----DADIE 414 (429)
T ss_dssp E-E-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSS----T-----TSCBCCC--TTCC----HHHHH
T ss_pred e-e-ccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecC----C-----CCCEEEE--CCCC----HHHHH
Confidence 1 1 2233444422111 1356777888899998532 1 2367874 2444 99999
Q ss_pred HHHHHHHHHHHH
Q 013217 386 AIADFIHEGVEI 397 (447)
Q Consensus 386 ~l~~~i~~~l~~ 397 (447)
++.+.|++++..
T Consensus 415 ~~l~~l~~~l~~ 426 (429)
T 3k28_A 415 ATIAAAEIAMSK 426 (429)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 225
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.77 E-value=1.9e-16 Score=158.77 Aligned_cols=328 Identities=13% Similarity=0.030 Sum_probs=186.1
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHhc--C
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAIL--K 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al~--~ 108 (447)
.+|.|.+++.+.+... ..+....+ ..+... ..+++++++++.+ .+. .+.++||++|+..++.... .
T Consensus 81 ~~p~v~~A~~~~~~~~--~~~~~~~~--~~~~~~----~la~~l~~~~~~~~~~~---v~~~~sGseA~~~alk~a~~~~ 149 (453)
T 4ffc_A 81 SHPAVAAAIADQATHF--THTCFMVT--PYEQYV----QVAELLNALTPGDHDKR---TALFNSGAEAVENAIKVARLAT 149 (453)
T ss_dssp TCHHHHHHHHHHHHHC--SCCTTTTS--CCHHHH----HHHHHHHHHSSCSSCEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccccCcC--CCHHHH----HHHHHHHHhCCCCCCcE---EEEeCcHHHHHHHHHHHHHHhc
Confidence 3899999998877542 11221111 122222 3346788888754 232 2345778899999987654 3
Q ss_pred CCCEEEEecCCCCcccCCCc------cccccccccccceeEEEecccCC-CCCCCC--------HHHHHHHhhhhCCcEE
Q 013217 109 PHDRIMGLDLPHGGHLSHGF------MTPKRRVSGTSIYFESMPYRLDE-STGLVD--------YDMLEKTAILFRPKLI 173 (447)
Q Consensus 109 pgd~Vl~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~-~~~~id--------~~~l~~~~~~~~~kli 173 (447)
.+++|++.++.|.|...... ..+..........+..++++... +....+ .++|++.+...++.+|
T Consensus 150 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aav 229 (453)
T 4ffc_A 150 GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAI 229 (453)
T ss_dssp CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 45899999888765421000 00000000011123344443211 111222 4556666554345666
Q ss_pred EEcCCCCC-C-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC----cccEEEeCCCcccC-CCCCceE
Q 013217 174 IAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLR-GPRGGMI 242 (447)
Q Consensus 174 i~~~~~~~-~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~----~~Di~~~s~~K~l~-Gp~gG~i 242 (447)
++.+.+.. + ..+ +++|+++|++||+++|+|++| .|+...+.. ..+. ..|++++| |+++ |+|.|++
T Consensus 230 i~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~-~g~g~~g~~-~a~~~~~~~pdi~t~s--K~~~~G~~~G~~ 305 (453)
T 4ffc_A 230 IIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQ-TGFARTGAW-FASEHEGIVPDIVTMA--KGIAGGMPLSAV 305 (453)
T ss_dssp EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSS-STHHHHTCCCSEEEEC--GGGGTTSSCEEE
T ss_pred EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCc-cCCCccccc-chhhhcCCCcchHhhh--hhhcCCcCeEEE
Confidence 66643322 2 333 899999999999999999997 444322211 0111 24677654 9884 5677999
Q ss_pred EeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----C-CcEeee
Q 013217 243 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----L-GYKLVS 317 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~-g~~~~~ 317 (447)
++++ ++.+.+......+..+ .+....++..++++.+..+ ++.+++.++.+++++.|.+ . ++..+.
T Consensus 306 ~~~~------~i~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 375 (453)
T 4ffc_A 306 TGRA------ELMDAVYAGGLGGTYG-GNPVTCAAAVAALGVMREL---DLPARARAIEASVTSRLSALAEEVDIIGEVR 375 (453)
T ss_dssp EEEH------HHHTTSCTTSSCCSSS-SCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred EECH------HHHhhhcccCcCCCCC-cCHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 9987 7777666543333333 3444444445567655433 3455566666666666654 2 232222
Q ss_pred CCCCCeeEEecCCC------CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHH
Q 013217 318 GGSDNHLVLVDLRP------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 391 (447)
Q Consensus 318 ~~~~~~~~~v~~~~------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i 391 (447)
+ ...++++++.. ......++.+.|.++||.+... .. ..+.+|++++..++ ++|++++++.|
T Consensus 376 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~---~~~~iRi~~~~~~t----~e~i~~~l~~l 442 (453)
T 4ffc_A 376 G--RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTC----GT---FGNVIRLLPPLVIG----DDLLDEGITAL 442 (453)
T ss_dssp E--ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEE----CT---TSCEEEECCCTTCC----HHHHHHHHHHH
T ss_pred e--eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecC----CC---CCCEEEEECCCCCC----HHHHHHHHHHH
Confidence 2 12345555532 1112456777888899998542 11 13589999887777 99999999999
Q ss_pred HHHHHH
Q 013217 392 HEGVEI 397 (447)
Q Consensus 392 ~~~l~~ 397 (447)
++++..
T Consensus 443 ~~~l~~ 448 (453)
T 4ffc_A 443 SDIIRA 448 (453)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 226
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.76 E-value=6.1e-16 Score=154.05 Aligned_cols=315 Identities=14% Similarity=0.101 Sum_probs=180.3
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--CC
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 109 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~p 109 (447)
.+|.|.+++...+.+....+|| .+...++ .++++++++ ..+. .+.++||++|+..++.... .+
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~l----a~~l~~~~~-~~~~---v~~~~sGsea~~~al~~a~~~~~ 134 (429)
T 4e77_A 70 NHPAIRQAVIEAVERGLSFGAP-------TEMEVKM----AQLVTDLVP-TMDM---VRMVNSGTEATMSAIRLARGYTG 134 (429)
T ss_dssp TCHHHHHHHHHHHTTCSCCSSC-------CHHHHHH----HHHHHHHST-TCSE---EEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcccCCC-------CHHHHHH----HHHHHhhCC-CCCE---EEEeCcHHHHHHHHHHHHHHhhC
Confidence 4799999998877653222222 1222233 357888886 3332 2345778899998887542 35
Q ss_pred CCEEEEecCCCCcccCCCccc-ccccc-----ccccc----eeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcC
Q 013217 110 HDRIMGLDLPHGGHLSHGFMT-PKRRV-----SGTSI----YFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA 177 (447)
Q Consensus 110 gd~Vl~~~~~~~~~~~~~~~~-~~~~~-----~~~g~----~~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~ 177 (447)
+++|++.++.|.|........ ..... ...+. ......++ ..|+++|+++++++ ++++|++.+
T Consensus 135 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep 208 (429)
T 4e77_A 135 RDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCT------YNDLASVRQAFEQYPQEVACIIVEP 208 (429)
T ss_dssp CCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEEC------TTCHHHHHHHHHHSTTTEEEEEECS
T ss_pred CCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecC------CCCHHHHHHHHHhcCCCEEEEEECC
Confidence 678988887765442100000 00000 00000 00011111 13899999999753 456777764
Q ss_pred CCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCceEEeecC
Q 013217 178 SAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKD 247 (447)
Q Consensus 178 ~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~ 247 (447)
.++ ++ ..+ +++|.++|++||+++|+|++|. |+ ..+... ..+. ..|++++ +|+++ |.+.|++++++
T Consensus 209 ~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~t~--sK~~~~G~~~G~~~~~~- 283 (429)
T 4e77_A 209 VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLTCL--GKIIGGGMPVGAFGGRR- 283 (429)
T ss_dssp SBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEEEE--EGGGGTTSCCEEEEECH-
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCeeee--cccccCCCCeEEEEECH-
Confidence 333 23 445 8999999999999999999985 54 222110 0011 2477654 59885 56779999887
Q ss_pred CcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCcEeeeCCCC
Q 013217 248 PVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSD 321 (447)
Q Consensus 248 ~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~ 321 (447)
++.+.+.... ..+...+.+...+++..++++.+..+ ++.+++.++.+++++.|.+ .++.....+ .
T Consensus 284 -----~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~ 354 (429)
T 4e77_A 284 -----EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQV---GVYETLTELTDSLATGLRHAAKEENIPLVVNH-V 354 (429)
T ss_dssp -----HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE-E
T ss_pred -----HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEE-e
Confidence 6777665421 11112234566666666678776543 3456667777777777655 344322211 2
Q ss_pred CeeEEecCCCCC-------------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217 322 NHLVLVDLRPMG-------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA 388 (447)
Q Consensus 322 ~~~~~v~~~~~~-------------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~ 388 (447)
..++++.+.... ....++.+.|.++||.+... . ..++|++ ..++ ++|+++++
T Consensus 355 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~-----~~~~~~~--~~~t----~e~i~~~l 419 (429)
T 4e77_A 355 GGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPS----A-----FEAGFMS--LAHS----NEDIQKTV 419 (429)
T ss_dssp TTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSS----T-----TSCEECC--TTCC----HHHHHHHH
T ss_pred eeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeec----C-----CCCEEEe--ccCC----HHHHHHHH
Confidence 334556654320 01256777888889998542 1 1246653 3444 99999999
Q ss_pred HHHHHHHH
Q 013217 389 DFIHEGVE 396 (447)
Q Consensus 389 ~~i~~~l~ 396 (447)
+.|++++.
T Consensus 420 ~~l~~~l~ 427 (429)
T 4e77_A 420 NAARRCFA 427 (429)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998774
No 227
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.76 E-value=6.8e-16 Score=154.70 Aligned_cols=328 Identities=12% Similarity=0.015 Sum_probs=184.5
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCC-CCccceeeecCCcHHHHHHHHHHhcC--
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK-- 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~-~~~~~~~v~~~sGs~a~~~~~~al~~-- 108 (447)
.+|.|.+++.+.+... ..+....+ ..+... ...++++++++.. .+. .+.++||++|+.+++.....
T Consensus 78 ~~p~v~~A~~~~~~~~--~~~~~~~~--~~~~~~----~la~~l~~~~~~~~~~~---v~~~~sGseA~~~Alk~a~~~~ 146 (451)
T 3oks_A 78 SAPKVVEAVRSQVGDF--THTCFMVT--PYEGYV----AVCEQLNRLTPVRGDKR---SALFNSGSEAVENAVKIARSHT 146 (451)
T ss_dssp TCHHHHHHHHHHHTTC--SCCTTTTS--CCHHHH----HHHHHHHHHSSCCSSEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--ccccCCcc--CCHHHH----HHHHHHHHhCCcCCCCE---EEEeCcHHHHHHHHHHHHHHhc
Confidence 3899999998877542 11111111 122222 3346788888744 222 23457888999999876643
Q ss_pred CCCEEEEecCCCCcccCCCc------cccccccccccceeEEEecccC-------CCC---CCCCHHHHHHHhhh----h
Q 013217 109 PHDRIMGLDLPHGGHLSHGF------MTPKRRVSGTSIYFESMPYRLD-------EST---GLVDYDMLEKTAIL----F 168 (447)
Q Consensus 109 pgd~Vl~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~-------~~~---~~id~~~l~~~~~~----~ 168 (447)
.+++|++.++.|.|...... ..+..........+..++++.+ .+. ...+++.+++.+++ .
T Consensus 147 g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (451)
T 3oks_A 147 HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGAD 226 (451)
T ss_dssp CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGG
T ss_pred CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCC
Confidence 45899998888765421000 0000000011112333443310 000 01234555454442 3
Q ss_pred CCcEEEEcCCCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCC
Q 013217 169 RPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPR 238 (447)
Q Consensus 169 ~~klii~~~~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~ 238 (447)
++.+|++.+.+. ++ ..+ +++|+++|++||+++|+|++|. |+...+.. . ...+ ..|++++ +|+++ |+|
T Consensus 227 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~t~--sK~l~~G~~ 303 (451)
T 3oks_A 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-GFARTGAMFACEHEGIDPDLIVT--AKGIAGGLP 303 (451)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSS
T ss_pred CEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCccccchhhhhcCCCCCeeee--hhhhhCCcc
Confidence 556777764332 23 333 8999999999999999999974 44332211 0 0011 2577755 59984 567
Q ss_pred CceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----C-Cc
Q 013217 239 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----L-GY 313 (447)
Q Consensus 239 gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~-g~ 313 (447)
.|++++++ ++.+.+......+..+ .+....++..++++.+..+ ++.+++.++.+++++.|.+ . .+
T Consensus 304 iG~v~~~~------~~~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~ 373 (451)
T 3oks_A 304 LSAVTGRA------EIMDSPHVSGLGGTYG-GNPIACAAALATIETIESE---GLVARAQQIEKIMKDRLGRLQAEDDRI 373 (451)
T ss_dssp CEEEEEEH------HHHTCSCTTSBCCSSS-SCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred eEEEEECH------HHHhhhcCCCcCCCCC-CCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 79999887 7777665433322233 3444454545567665433 3456666666777766654 2 23
Q ss_pred EeeeCCCCCeeEEecCCC------CCCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHH
Q 013217 314 KLVSGGSDNHLVLVDLRP------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI 387 (447)
Q Consensus 314 ~~~~~~~~~~~~~v~~~~------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l 387 (447)
..+.+ . ..++++.+.. ......++.+.|.++||.+... .. ....+|++++..++ ++|++++
T Consensus 374 ~~~~~-~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~---~~~~iRi~~~~~~t----~e~i~~~ 440 (451)
T 3oks_A 374 GDVRG-R-GAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSC----GT---YGNVVRFLPPLSIG----DDLLNEG 440 (451)
T ss_dssp EEEEE-E-TTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEE----CT---TSCEEEECCCTTCC----HHHHHHH
T ss_pred EEEEE-e-eEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecC----CC---CCCEEEEECCCCCC----HHHHHHH
Confidence 22222 1 2345555422 1112456778888899998542 11 13589999887777 9999999
Q ss_pred HHHHHHHHH
Q 013217 388 ADFIHEGVE 396 (447)
Q Consensus 388 ~~~i~~~l~ 396 (447)
++.|++++.
T Consensus 441 l~~l~~~l~ 449 (451)
T 3oks_A 441 LDVLEEVLR 449 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
No 228
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.76 E-value=5.3e-17 Score=161.48 Aligned_cols=322 Identities=14% Similarity=0.023 Sum_probs=187.1
Q ss_pred CeeEecCC--C---CCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcH
Q 013217 22 SLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 96 (447)
Q Consensus 22 ~i~l~~~~--n---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs 96 (447)
.|++..+. + +.+|.|.+++.+.+.+....+| ..+... ...++++++++ ..+. .+.++||+
T Consensus 54 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-------~~~~~~----~l~~~l~~~~~-~~~~---v~~~~~g~ 118 (424)
T 2e7u_A 54 YLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGA-------PSPLEV----ALAKKVKRAYP-FVDL---VRFVNSGT 118 (424)
T ss_dssp EEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSS-------CCHHHH----HHHHHHHHHCT-TCCE---EEEESSHH
T ss_pred EEEccccccccccCCCCHHHHHHHHHHHHhCCCCCC-------CCHHHH----HHHHHHHHhCC-CCCE---EEEeCCHH
Confidence 35555443 2 2589999999888765211111 112223 33467888885 3332 23356778
Q ss_pred HHHHHHHHH---hcCCCCEEEEecCCCCcccCCCcccccc---c---cccccce----eEEEecccCCCCCCCCHHHHHH
Q 013217 97 PANFEVYTA---ILKPHDRIMGLDLPHGGHLSHGFMTPKR---R---VSGTSIY----FESMPYRLDESTGLVDYDMLEK 163 (447)
Q Consensus 97 ~a~~~~~~a---l~~pgd~Vl~~~~~~~~~~~~~~~~~~~---~---~~~~g~~----~~~~~~~~~~~~~~id~~~l~~ 163 (447)
+|+..++.. +. ++|+|++.++.|.++.......... . ....|.. ..++.++ ..|+++|++
T Consensus 119 ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~ 191 (424)
T 2e7u_A 119 EATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLE------YNDPEGLRE 191 (424)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEEC------TTCHHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCC------CCCHHHHHH
Confidence 999988875 44 4588888888776542110000000 0 0001100 0122221 148999999
Q ss_pred Hhhh--hCCcEEEEcCCCC-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccC-CC-CCC-cccEEEeCCCc
Q 013217 164 TAIL--FRPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHK 232 (447)
Q Consensus 164 ~~~~--~~~klii~~~~~~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~~-~~~-~~Di~~~s~~K 232 (447)
++++ .++++|++++.+. ++ ..+ +++|.++ ++||+++|+|++|. |+ ..+.. .. .++ ..|++ |++|
T Consensus 192 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK 266 (424)
T 2e7u_A 192 VLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GF-RLAFGGATELLGLKPDLV--TLGK 266 (424)
T ss_dssp HHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEE--EECG
T ss_pred HHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-cc-ccchhHHHHHhCCCcchh--hhhh
Confidence 8874 2567777764332 34 566 8999999 99999999999985 65 22210 00 001 25776 5569
Q ss_pred ccC-CCCCceEEeecCCcchhhHHHHhhhcc--CCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 013217 233 SLR-GPRGGMIFFKKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV 309 (447)
Q Consensus 233 ~l~-Gp~gG~i~~~~~~~~~~~~~~~i~~~~--~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 309 (447)
+++ |.++|++++++ ++.+.+.... ..+...+.+...+++..++++.+.. .+++.+++.++.+++.+.|+
T Consensus 267 ~l~~G~~~G~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~ 338 (424)
T 2e7u_A 267 ILGGGLPAAAYAGRR------EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLK 338 (424)
T ss_dssp GGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCcceEEEEEcH------HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH
Confidence 986 45789999987 6777665411 1111113345555555567766542 13457778888888888887
Q ss_pred HC----CcEeeeCCCCCeeEEecCCCCC------------CCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCc
Q 013217 310 EL----GYKLVSGGSDNHLVLVDLRPMG------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA 373 (447)
Q Consensus 310 ~~----g~~~~~~~~~~~~~~v~~~~~~------------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~ 373 (447)
+. ++.....+ ...++++++.... ....++.+.|.++||.+..+ . ..++|++ .
T Consensus 339 ~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-----~~~~~~~--~ 406 (424)
T 2e7u_A 339 EVLKEKGLPHTVNR-VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPS----N-----FEAAFLS--V 406 (424)
T ss_dssp HHHHHTTCCCEEEE-ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSS----S-----SSCEECC--T
T ss_pred HHHHhCCCceEEEe-eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEecc----C-----CCceEee--c
Confidence 63 54321111 2335677775311 12346777788899998542 1 1246654 3
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q 013217 374 MTTRGFSEKEFVAIADFIHEG 394 (447)
Q Consensus 374 ~~~~g~~~~di~~l~~~i~~~ 394 (447)
.++ ++|++++++.|+++
T Consensus 407 ~~t----~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 407 AHR----EEDVEKTLEALRKA 423 (424)
T ss_dssp TCC----HHHHHHHHHHHHHH
T ss_pred cCC----HHHHHHHHHHHHHh
Confidence 444 99999999998775
No 229
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.76 E-value=1.3e-16 Score=160.17 Aligned_cols=313 Identities=12% Similarity=0.056 Sum_probs=180.8
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHH---hcC
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---ILK 108 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~a---l~~ 108 (447)
.+|.|.+++...+.... .+ ++ ...++....+++++.++ ..+. .+.++||++|+..++.+ +.+
T Consensus 74 ~~~~v~~a~~~~~~~~~--~~------~~---~~~~~~~la~~l~~~~~-~~~~---v~~~~gg~eA~~~al~~ar~~~~ 138 (453)
T 2cy8_A 74 GHPRVNAAIAEALSHGV--QY------AA---SHPLEVRWAERIVAAFP-SIRK---LRFTGSGTETTLLALRVARAFTG 138 (453)
T ss_dssp TCHHHHHHHHHHHTTTC--SS------CS---SCHHHHHHHHHHHHHCT-TCSE---EEEESCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCC--CC------CC---CCHHHHHHHHHHHhhCC-CCCE---EEEeCCHHHHHHHHHHHHHHhhC
Confidence 57999999988775421 11 11 12344455678888886 4432 23357778999998887 555
Q ss_pred CCCEEEEecCCCCcccCCCccccccc---cccccce----eEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEcCCC
Q 013217 109 PHDRIMGLDLPHGGHLSHGFMTPKRR---VSGTSIY----FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASA 179 (447)
Q Consensus 109 pgd~Vl~~~~~~~~~~~~~~~~~~~~---~~~~g~~----~~~~~~~~~~~~~~id~~~l~~~~~~~--~~klii~~~~~ 179 (447)
+|+|++.++.|.|............ ....|.. ..++.++ ..|+++|+++++++ ++++|++++.+
T Consensus 139 -~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep~~ 211 (453)
T 2cy8_A 139 -RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR------PDDIEGMREVFANHGSDIAAFIAEPVG 211 (453)
T ss_dssp -CCEEEEECC----------------------------CGGGEEEEC------TTCHHHHHHHHHHHGGGEEEEEECSSE
T ss_pred -CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC------CCCHHHHHHHHHhcCCCEEEEEECCCC
Confidence 4688888877655421110000000 0001110 0111211 14899999998742 67788877543
Q ss_pred C-CC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC--CCCC-cccEEEeCCCcccC-CCCCceEEeecCCc
Q 013217 180 Y-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV 249 (447)
Q Consensus 180 ~-~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~--~~~~-~~Di~~~s~~K~l~-Gp~gG~i~~~~~~~ 249 (447)
+ ++ ..+ +++|.++|++||+++|+|++|. |+ ..+... ..++ ..|++ |++|+|+ |.++|++++++
T Consensus 212 ~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~--- 284 (453)
T 2cy8_A 212 SHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGRE--- 284 (453)
T ss_dssp HHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECH---
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechH---
Confidence 3 23 456 8999999999999999999985 65 322100 0001 25776 4559986 56789999987
Q ss_pred chhhHHHHhhh---c-cCCCCCCCCcHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHC----CcEeeeCCC
Q 013217 250 LGVELESAINN---A-VFPGLQGGPHNHTIGGLAVCLKH-AQSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGS 320 (447)
Q Consensus 250 ~~~~~~~~i~~---~-~~~~~~g~p~~~~~aal~~al~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 320 (447)
++.+.+.. . ...+...+.+...+++..++++. + .+ ++.+++.++.+++.+.|++. ++.....+
T Consensus 285 ---~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~- 356 (453)
T 2cy8_A 285 ---DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-ED---DVCAKINDLGQFAREAMNHLFARKGLNWLAYG- 356 (453)
T ss_dssp ---HHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HT---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEEC-
T ss_pred ---HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hh---hHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-
Confidence 67766654 1 01111123455555555567776 4 22 34567777788888877652 44221122
Q ss_pred CCeeEEecCCC-----C-------------CCCHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217 321 DNHLVLVDLRP-----M-------------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK 382 (447)
Q Consensus 321 ~~~~~~v~~~~-----~-------------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~ 382 (447)
...++++++.. . .....++.+.|.++||.+. |+ +.+|++ ..++ ++
T Consensus 357 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~----~~-------~~~~l~--~~~t----~~ 419 (453)
T 2cy8_A 357 RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIG----GR-------GSVFLS--AQHE----RE 419 (453)
T ss_dssp CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECB----TT-------TEEECC--TTCC----HH
T ss_pred eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEe----CC-------CCEEee--ccCC----HH
Confidence 23456777653 1 0124567778888999983 21 246653 4444 99
Q ss_pred HHHHHHHHHHHHHHHH
Q 013217 383 EFVAIADFIHEGVEIT 398 (447)
Q Consensus 383 di~~l~~~i~~~l~~~ 398 (447)
|++++++.|++++...
T Consensus 420 ~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 420 HVEHLVTTFDRVLDRL 435 (453)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998754
No 230
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.75 E-value=2.6e-18 Score=170.95 Aligned_cols=322 Identities=10% Similarity=0.010 Sum_probs=195.4
Q ss_pred cCeeEecCCCCC--CHHHHHHHhhhhhccCCC--CCCCCcccCchhHHHHHHHHHHHHHHHHcC--CCCCccceeeecCC
Q 013217 21 KSLELIASENFT--SRAVMEAVGSCLTNKYSE--GLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLS 94 (447)
Q Consensus 21 ~~i~l~~~~n~~--~~~v~~a~~~~~~~~~~~--g~~~~~~~~g~~~~~~le~~~~~~~~~~~g--~~~~~~~~~v~~~s 94 (447)
..++|..+++.. ++.+++++...+...-.. +|+... .|.....++++...+++.+..+ ++++ +|.+++
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~--~G~~~~~~lr~aia~~~~~~~~~~~~~~----~iv~t~ 130 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNP--VSNFISFELEKTIKELHEVVGNAAAKDR----YIVFGV 130 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSS--CCTTCCHHHHHHHHHHHHHHTCBCCTTC----EEEEES
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCC--CCccchHHHHHHHHHHHHHhCCcCCCCC----EEEEeC
Confidence 346777777743 356677776655221011 243321 0211134566555555555443 3444 344577
Q ss_pred cH-HHHHHHHHHh--------cCCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHh
Q 013217 95 GS-PANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA 165 (447)
Q Consensus 95 Gs-~a~~~~~~al--------~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~ 165 (447)
|+ +++..++.++ ++|||+|++.+|.|.++.. .+...|. +++. +.+|+++|++++
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~-------~~~d~~~l~~~~ 193 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE--------QTKYFDK--KGYV-------WAGNAANYVNVS 193 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH--------HHHHSCB--TTEE-------EEEEGGGGTTCS
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH--------HHHHcCC--eeee-------ecCCHHHHHHhh
Confidence 76 8999999999 9999999999998866431 2233343 2222 346778888777
Q ss_pred hhhCCcEEEEcCCCCCC--CCChHHHHHHHHHhCCEEEEehhhhccccccccCCCCC-CcccEEEeCCCccc--CCCCCc
Q 013217 166 ILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-KYCDVVTTTTHKSL--RGPRGG 240 (447)
Q Consensus 166 ~~~~~klii~~~~~~~~--~~~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~-~~~Di~~~s~~K~l--~Gp~gG 240 (447)
++ ++|+|+++.++||+ ..+ + +++ ++..+.|++++.... .. ..+ ...+++++|+||++ +|.|.|
T Consensus 194 ~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~--s~--~~~~~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 194 NP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHY--TP--IKYKADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp CG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTT--SC--CCSCBCCSEEEEEHHHHTSCGGGCCE
T ss_pred cC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCC--Cc--cccCCCceEEEEeChhcCCCCCceEE
Confidence 66 78999988888886 556 3 333 567888887642110 00 111 24689999999986 477889
Q ss_pred eEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhc----------ChhHHHHHHHHHHHHHHHHHHHHH
Q 013217 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ----------SPEFKVYQNKVVSNCRALASRLVE 310 (447)
Q Consensus 241 ~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~ 310 (447)
+++++++ ++.+.+.........+.+...+.+ +..+++... ...+++..+++.++++.+.+.|++
T Consensus 262 ~~~~~~~-----~l~~~l~~~~~~~~~~~~~~~q~a-~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (427)
T 2hox_A 262 WALIKDE-----SVYNNLLNYMTKNTEGTPRETQLR-SLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ 335 (427)
T ss_dssp EEEECCH-----HHHHHHHHHHHHHTSSCCHHHHHH-HHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCH-----HHHHHHHHHHHhcCCCCCHHHHHH-HHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999532 677766654322223333333333 334555321 223355667888889999999988
Q ss_pred C-CcEe--ee-C----------CCCCeeEEecCCCCCCCHHHHH-HHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccc
Q 013217 311 L-GYKL--VS-G----------GSDNHLVLVDLRPMGIDGARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 375 (447)
Q Consensus 311 ~-g~~~--~~-~----------~~~~~~~~v~~~~~~~~~~~~~-~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~ 375 (447)
. |+.+ +. + +....++|+++.. +..++. .+|+++||.+..+...+. .++++|+++..
T Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f~~----~~~~~Ris~~~-- 406 (427)
T 2hox_A 336 SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW---EEDKDCYQTFQNGRINTQNGVGFEA----SSRYVRLSLIK-- 406 (427)
T ss_dssp SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS---GGGCSHHHHHHHTTEECEEGGGGTS----CTTEEEEECSS--
T ss_pred CcCccccccccccccccccccCCCCceEEEEECCC---cHHHHHHHHHHHCCEEEcCCCccCC----CCCEEEEEecC--
Confidence 5 7765 11 1 1224567888753 333444 455789999975432221 35689999762
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 013217 376 TRGFSEKEFVAIADFIHEGVE 396 (447)
Q Consensus 376 ~~g~~~~di~~l~~~i~~~l~ 396 (447)
+ ++++++.++.|.+++.
T Consensus 407 ~----~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 407 T----QDDFDQLMYYLKDMVK 423 (427)
T ss_dssp C----HHHHHHHHHHHHHHHT
T ss_pred C----HHHHHHHHHHHHHHHh
Confidence 4 7889999888887764
No 231
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.70 E-value=1.9e-15 Score=152.18 Aligned_cols=317 Identities=13% Similarity=0.101 Sum_probs=182.1
Q ss_pred CCHHHHHHHhhhhhcc-CCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc---
Q 013217 32 TSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 107 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~-~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--- 107 (447)
.+|.|.+|+...+... +..+ . . ++. ....++++.+.++++++++...+. .+.++||++||..++..+.
T Consensus 80 ~~p~v~~A~~~~~~~~~~~~~--~-~-~~~-~~~~~l~~~la~~l~~~~~~~~~~---v~f~~sGseA~~~Aik~a~~~~ 151 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVSTFINR--P-A-LGI-LPPENFVEKLRESLLSVAPKGMSQ---LITMACGSCSNENAFKTIFMWY 151 (472)
T ss_dssp TCHHHHHHHHCGGGHHHHHCC--C-C-TTT-SCBTTHHHHHHHTGGGGCCTTCCE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccccc--c-c-ccc-ccHHHHHHHHHHHHHHhCCCCcCE---EEEeCCchhHHHHHHHHHHHHh
Confidence 3899999998765321 1111 0 1 111 111234433344566666444332 2345889999999987663
Q ss_pred -----C-----------------CC---CEEEEecCCCCcccCCCccccccccccccce-----------eEEEecccC-
Q 013217 108 -----K-----------------PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----------FESMPYRLD- 150 (447)
Q Consensus 108 -----~-----------------pg---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~- 150 (447)
. || ++|+++++.|.|+... .+.+.|.. +..++++..
T Consensus 152 ~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 224 (472)
T 1ohv_A 152 RSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG-------CLATTHSKAIHKIDIPSFDWPIAPFPRLK 224 (472)
T ss_dssp HHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHH-------HHHHCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred hhhccCcccccccccccccccccccCCCCeEEEECCCcccccHH-------HHhcCCCccccccCCCCCCCcccCCCccc
Confidence 1 56 8999998776554211 11111110 011122110
Q ss_pred -C--CC-------CCCCHHHHHHHhhhh-----CCcEEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhcc
Q 013217 151 -E--ST-------GLVDYDMLEKTAILF-----RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISG 209 (447)
Q Consensus 151 -~--~~-------~~id~~~l~~~~~~~-----~~klii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g 209 (447)
+ .. ...|+++|+++++++ ++++|++.+. +..+ ..+ +++|+++|++||+++|+|++|. |
T Consensus 225 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g 303 (472)
T 1ohv_A 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-G 303 (472)
T ss_dssp SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred CccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc-C
Confidence 0 00 023789999988763 6788888743 3344 556 8999999999999999999985 4
Q ss_pred ccccccC-C---CCCC-cccEEEeCCCcc-cCCCCCceEEeecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHH
Q 013217 210 LVAASVV-A---DPFK-YCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 283 (447)
Q Consensus 210 ~~~~~~~-~---~~~~-~~Di~~~s~~K~-l~Gp~gG~i~~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~ 283 (447)
+...+.. . ..+. ..|++++| |+ ++ ||+++ ++ ++. .+......++. +.+...+++..++++
T Consensus 304 ~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~---GG~~~-~~------~~~-~~~~~~~~~T~-~~~~~~~aaa~aal~ 369 (472)
T 1ohv_A 304 GGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---GGFFH-KE------EFR-PNAPYRIFNTW-LGDPSKNLLLAEVIN 369 (472)
T ss_dssp TTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---EEEEE-CG------GGS-CSSSSSSCCSS-SSCHHHHHHHHHHHH
T ss_pred CCCCCCchhccccCCCCCCCEEEEc--ccccc---CCccC-ch------hhc-ccccccccCcc-CccHHHHHHHHHHHH
Confidence 3322210 0 0110 16877655 98 44 47776 44 431 11111111222 234555555556777
Q ss_pred HhcChhHHHHHHHHHHHHHHHHHHHHHC--C----cEeeeCCCCCeeEEecCCCCCCCHHHHHHHHhhcCeEEccCCCCC
Q 013217 284 HAQSPEFKVYQNKVVSNCRALASRLVEL--G----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357 (447)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~ 357 (447)
.+.+++ +.+++.++.++|.+.|.+. + +..+.+ ...++++++.. ..+...+.+.|.++||.+...
T Consensus 370 ~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~--~g~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~---- 439 (472)
T 1ohv_A 370 IIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRVRG--RGTFCSFDTPD-ESIRNKLISIARNKGVMLGGC---- 439 (472)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE--ETTEEEEECSS-HHHHHHHHHHHHHTTEECEEE----
T ss_pred HHHhCC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC--CceEEEEEeCC-hhHHHHHHHHHHHCCeEEecC----
Confidence 654333 4667777888888888663 2 222222 23345556542 112456777787899998531
Q ss_pred CCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 358 ~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
..+.||++++..++ ++|++++++.|++++..
T Consensus 440 -----g~~~iRi~~~~~~t----~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 440 -----GDKSIRFRPTLVFR----DHHAHLFLNIFSDILAD 470 (472)
T ss_dssp -----TTTEEEECCCTTCC----HHHHHHHHHHHHHHHHT
T ss_pred -----CCCEEEEECCCCCC----HHHHHHHHHHHHHHHHh
Confidence 13589999988887 99999999999988763
No 232
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.58 E-value=1.4e-12 Score=129.28 Aligned_cols=309 Identities=18% Similarity=0.125 Sum_probs=173.7
Q ss_pred CHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc--CCC
Q 013217 33 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KPH 110 (447)
Q Consensus 33 ~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~--~pg 110 (447)
.|.|.+|+.+.+.+....+ ..+....+++ +++++.+..-. . ...++||++|+..++.... ...
T Consensus 105 hp~v~~Av~~q~~~~~~~~-------~~~~~~~~la----e~l~~~~p~~~-~---v~f~~SGsEA~e~AiklAr~~tgr 169 (454)
T 4ao9_A 105 APEIRDAVIEAMQGGINLT-------GHNLLEGRLA----RLICERFPQIE-Q---LRFTNSGTEANLMALTAALHFTGR 169 (454)
T ss_dssp CHHHHHHHHHHHHTCSCCC-------SEESSHHHHH----HHHHHHSTTCS-E---EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhcCCCcc-------CCcHHHHHHH----HHHHHhCCCCC-E---EEEeCchHHHHHHHHHHHHhcccC
Confidence 6999999888776532111 1122222333 56777764221 1 2335899999999887542 234
Q ss_pred CEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhC--CcEEEEcCC-CCCC-CCC-
Q 013217 111 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGAS-AYPR-DFD- 185 (447)
Q Consensus 111 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~--~klii~~~~-~~~~-~~~- 185 (447)
++|+...-.|.|+.. +..... ...........++ .-|.+.+++.++++. +.+||+.+. .+.+ ..+
T Consensus 170 ~~ii~~~~~yHG~t~-~~~~~~---~~~~~~~~~~~~p------~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~ 239 (454)
T 4ao9_A 170 RKIVVFSGGYHGGVL-GFGARP---SPTTVPFDFLVLP------YNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQ 239 (454)
T ss_dssp CEEEEETTCBCSTTC-BBSSSB---CTTSCCSEEEEEC------TTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECC
T ss_pred CeEEEEeCCcCCccc-cccccc---cCccCCCCcccCC------CchHHHHHHHHhhcCCceEEEEeccccCCCCccCCc
Confidence 688887766544321 110000 0001111222222 247899999887643 456777531 2233 333
Q ss_pred ---hHHHHHHHHHhCCEEEEehhhhccccccccCCCCCC-cccEEEeCCCcccCC-CCCceEEeecCCcchhhHHHHhhh
Q 013217 186 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVELESAINN 260 (447)
Q Consensus 186 ---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~~~~-~~Di~~~s~~K~l~G-p~gG~i~~~~~~~~~~~~~~~i~~ 260 (447)
+++|+++|++||+++|+|++|. |-+.......-++ ..|+++.+ |.++| .+.|.+.+++ ++.+.+..
T Consensus 240 ~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~------ei~~~~~~ 310 (454)
T 4ao9_A 240 PDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRA------DVMALFDP 310 (454)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECH------HHHGGGCT
T ss_pred hhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHH------HHHHHHhh
Confidence 7999999999999999999985 5332211000001 25898776 88854 4458888888 77777654
Q ss_pred ccCCCCC-C--CCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----CCc--EeeeCCCCCeeEEecCCC
Q 013217 261 AVFPGLQ-G--GPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGY--KLVSGGSDNHLVLVDLRP 331 (447)
Q Consensus 261 ~~~~~~~-g--~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~--~~~~~~~~~~~~~v~~~~ 331 (447)
...+..+ + +.|...+++..++|+.+.+++ ..+++.++.++|++.|++ .++ .+..-+ .. +-+.+..
T Consensus 311 ~~~~~~h~~T~~gnPla~AAala~L~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G--~m-~gi~f~~ 384 (454)
T 4ao9_A 311 RTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPE---AAGALAERGEALRARLNALCANEGVAMQFTGIG--SL-MNAHFVQ 384 (454)
T ss_dssp TTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEET--TE-EEEESCC
T ss_pred ccCCccccCCCCCCHHHHHHHHHHHHHHhccC---hhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeec--eE-EEEEEec
Confidence 3211111 1 224555665556788776654 466777778888887765 232 222111 21 1122211
Q ss_pred C---------CCCH---HHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 332 M---------GIDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 332 ~---------~~~~---~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
. ..+. ..+...|.++||.+.+ .+.+.+++ .+| ++|+++++++|++++...
T Consensus 385 ~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p-----------~~~~~~s~--~~T----~~dId~~l~al~~~l~~~ 446 (454)
T 4ao9_A 385 GDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSP-----------RGFVVLSL--PLT----DADIDRYVAAIGSFIGGH 446 (454)
T ss_dssp SCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCT-----------TCEEECCT--TCC----HHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcC-----------CCCEEEeC--CCC----HHHHHHHHHHHHHHHHhc
Confidence 1 1122 2345567789998732 12344443 244 999999999999999864
No 233
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.32 E-value=3.4e-16 Score=156.30 Aligned_cols=320 Identities=13% Similarity=0.020 Sum_probs=178.8
Q ss_pred CeeEecCCCC-----CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHc-CCCCCccceeeecCCc
Q 013217 22 SLELIASENF-----TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLSG 95 (447)
Q Consensus 22 ~i~l~~~~n~-----~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~-g~~~~~~~~~v~~~sG 95 (447)
.|++..+... .+|.|.+++.+.+.+....+|+ .+...++ .+++++++ +.+. .+.++||
T Consensus 102 yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~-------~~~~~~L----ae~L~~~~p~~~~-----v~~~nSG 165 (465)
T 2yky_A 102 YVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQ-------TENEALF----AEAVCDRFPSIDL-----VRFTNSG 165 (465)
Confidence 4555544331 2678888877665442111111 1222233 35777787 4332 2345889
Q ss_pred HHHHHHHHHHhc--CCCCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhh--hCCc
Q 013217 96 SPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPK 171 (447)
Q Consensus 96 s~a~~~~~~al~--~pgd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~--~~~k 171 (447)
++|+..++.... ..+|+|++.+..|.|+..... . .....|....++.++ ..|+++|++++++ .+++
T Consensus 166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-s---g~~~~g~~~~~~~~~------~~d~~~l~~~l~~~~~~~a 235 (465)
T 2yky_A 166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-S---GHAPTNAPYHVVLGV------YNDVEGTADLLKRHGHDCA 235 (465)
Confidence 999999887652 456899998877655321100 0 000011100112222 1478999998873 3788
Q ss_pred EEEEcCC-CCCC-CCC----hHHHHHHHHHhCCEEEEehhhhccccccccCC-CCCC-cccEEEeCCCcccC-CCCCceE
Q 013217 172 LIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK-YCDVVTTTTHKSLR-GPRGGMI 242 (447)
Q Consensus 172 lii~~~~-~~~~-~~~----~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~-~~~~-~~Di~~~s~~K~l~-Gp~gG~i 242 (447)
+|++.+. ++++ ..+ +++|+++|+++|+++|+|++|. + ....... ...+ ..|++ |++|+++ |.+.|++
T Consensus 236 avi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v 311 (465)
T 2yky_A 236 AILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAF 311 (465)
Confidence 8888742 3344 444 8999999999999999999987 4 2111100 0011 24665 5679985 4566999
Q ss_pred EeecCCcchhhHHHHhhhc----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC--CcEee
Q 013217 243 FFKKDPVLGVELESAINNA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLV 316 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~i~~~----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 316 (447)
++++ ++.+.+... .+.+...+.+...+++..++++.+.++ ++.+++.++.++|++.|++. .+.+.
T Consensus 312 ~~~~------~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~ 382 (465)
T 2yky_A 312 GGRR------DLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAP 382 (465)
Confidence 9888 676666541 111111122333444444567766543 34667777788888877663 22221
Q ss_pred --eCCCCCeeEEecCCCCCC------------CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHH
Q 013217 317 --SGGSDNHLVLVDLRPMGI------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK 382 (447)
Q Consensus 317 --~~~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~ 382 (447)
..+ ...++++.+....+ ....+.+.|.++||.+... . + .. ++..++ ++
T Consensus 383 ~~v~g-~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~----~---~---~~---~s~~~t----~e 444 (465)
T 2yky_A 383 LQFTG-LGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPR----G---M---YA---LSLEIA----DA 444 (465)
Confidence 111 22344554432000 1345667777899998532 1 0 01 233344 99
Q ss_pred HHHHHHHHHHHHHHHH
Q 013217 383 EFVAIADFIHEGVEIT 398 (447)
Q Consensus 383 di~~l~~~i~~~l~~~ 398 (447)
|+++++++|.+++...
T Consensus 445 did~~l~~l~~~l~~~ 460 (465)
T 2yky_A 445 GRDAFAEALADFIGEQ 460 (465)
Confidence 9999999999887643
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.48 E-value=1.5e-10 Score=115.09 Aligned_cols=331 Identities=15% Similarity=0.129 Sum_probs=173.7
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHh--cCC
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 109 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al--~~p 109 (447)
-.|.|.+|+.+.+.+- ... .. +....+. .++ ..+++.+++..+..+. .+.++||++|+..++... ...
T Consensus 81 ~~p~v~~Ai~~q~~~~-~~~--~~-~~~~~~~--~~~--lae~L~~~~p~~~~~~--v~f~~sGsEA~e~AlklAr~~t~ 150 (456)
T 4atq_A 81 SDPAVVAAVQEAAAHF-THT--CF-MVTPYEG--YVA--VTEQLNRLTPGDHAKR--TVLFNSGAEAVENAVKVARLATG 150 (456)
T ss_dssp TCHHHHHHHHHHHHHC-SCC--TT-TTSCCHH--HHH--HHHHHHHHSSCSSCEE--EEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhhc-cCc--cc-CccCcHH--HHH--HHHHHHHhCCCCCCcE--EEEeCChHHHHHHHHHHHhhhhc
Confidence 3689999987766542 111 10 1111111 121 2356777775432211 233589999999888643 234
Q ss_pred CCEEEEecCCCCccc------CCCccccccccccccceeEEEecccC--CC-CCCCCHHHHHHHhh-------hhCCcEE
Q 013217 110 HDRIMGLDLPHGGHL------SHGFMTPKRRVSGTSIYFESMPYRLD--ES-TGLVDYDMLEKTAI-------LFRPKLI 173 (447)
Q Consensus 110 gd~Vl~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~--~~-~~~id~~~l~~~~~-------~~~~kli 173 (447)
..+|+...-.|.|.- +...........-....+..++++.. .. ....+.+.+++.++ ..++.+|
T Consensus 151 r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAv 230 (456)
T 4atq_A 151 RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAI 230 (456)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEE
Confidence 578888876654431 00000000000000011222333221 11 11233444433332 2345677
Q ss_pred EEcCC-CCCC-CC----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC-CCCCceEE
Q 013217 174 IAGAS-AYPR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRGGMIF 243 (447)
Q Consensus 174 i~~~~-~~~~-~~----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~-Gp~gG~i~ 243 (447)
|+.+- ...+ .. =+++++++|++||+++|+|++| .|+--.|.. . ..++ ..|+++++ |.++ |.+.|.++
T Consensus 231 ivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~-tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~ 307 (456)
T 4atq_A 231 IIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQ-SGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAIT 307 (456)
T ss_dssp EECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEE
T ss_pred EeccccCCCCccccchhhhHHHHHHHhhcCCceEecccc-cccCCccccccccccCCCCchhhhh--hcccCcCCceeeE
Confidence 77632 1222 11 2799999999999999999998 443222211 0 0011 26999887 8875 34457888
Q ss_pred eecCCcchhhHHHHhhhccCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHC----C---cEee
Q 013217 244 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----G---YKLV 316 (447)
Q Consensus 244 ~~~~~~~~~~~~~~i~~~~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g---~~~~ 316 (447)
+++ ++.+.+......+++++ |...+++..+.++.+.++++ .++..+..++|.+.|++. . ..++
T Consensus 308 ~~~------~i~~~~~~~~~~~Tf~g-npla~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v 377 (456)
T 4atq_A 308 GRA------DLLDAVHPGGLGGTYGG-NPVACAAALAAIDTMEQHDL---NGRARHIEELALGKLRELAAELSAGGGSVV 377 (456)
T ss_dssp EEH------HHHTTSCTTSSCCSSSS-CHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-----CE
T ss_pred ecH------HHHhcccccCCCCCCCC-ChHHHHhhHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhcccccCCce
Confidence 887 67666654433333333 45555555557777765544 445555556666665541 1 1222
Q ss_pred eC--CCCCeeEEecCCCCC---CC---HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHH
Q 013217 317 SG--GSDNHLVLVDLRPMG---ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA 388 (447)
Q Consensus 317 ~~--~~~~~~~~v~~~~~~---~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~ 388 (447)
.+ +... +.-+++.... -+ ...+.+.|.++|+.+... + .....||+.++...| ++|++++.
T Consensus 378 ~~VRG~Gl-~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~---g----~~~~~irl~PpL~it----~~~id~~l 445 (456)
T 4atq_A 378 GDIRGRGA-MLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC---G----TYGNVIRLLPPLVIS----DELLIDGL 445 (456)
T ss_dssp EEEEEETT-EEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE---C----TTSCEEEECCCTTCC----HHHHHHHH
T ss_pred EEeeecce-EEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec---C----CCCCEEEEECCCCCC----HHHHHHHH
Confidence 21 1111 2223332211 11 245677788899987542 1 113479999886666 99999999
Q ss_pred HHHHHHHHH
Q 013217 389 DFIHEGVEI 397 (447)
Q Consensus 389 ~~i~~~l~~ 397 (447)
++|.++|+.
T Consensus 446 ~~l~~al~a 454 (456)
T 4atq_A 446 EVLAAAIKA 454 (456)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999873
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.30 E-value=2.1e-09 Score=107.29 Aligned_cols=327 Identities=12% Similarity=0.080 Sum_probs=173.0
Q ss_pred CCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCCccceeeecCCcHHHHHHHHHHhc----
Q 013217 32 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 107 (447)
Q Consensus 32 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~~~~~~v~~~sGs~a~~~~~~al~---- 107 (447)
-.|.+.+|+...+.+-. .+ + .+++ ......++ ..+++.++...+.+. .....||++|+..++....
T Consensus 84 ~~p~v~~Ai~~q~~~l~--~~-~-~~~~-~~~~~~~~--lAe~L~~~~p~~~~~---v~f~~sGsEA~e~AiKlAr~~~~ 153 (473)
T 4e3q_A 84 DHKGLIDAAKAQYERFP--GY-H-AFFG-RMSDQTVM--LSEKLVEVSPFDSGR---VFYTNSGSEANDTMVKMLWFLHA 153 (473)
T ss_dssp CCHHHHHHHHHHHHHCC--CC-C-CCTT-EEEHHHHH--HHHHHHHHSSCSSCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--cc-c-cccc-ccCHHHHH--HHHHHHhhCCCCccE---EEEeCchHHHHHHHHHHHHHHHH
Confidence 36999999887775421 01 0 1111 11111222 235777787654322 2335899999998886432
Q ss_pred ---CCC-CEEEEecCCCCcccC----CCcccccccc--ccccceeEEEeccc--C-CCCCCC-------CHHHHHHHhhh
Q 013217 108 ---KPH-DRIMGLDLPHGGHLS----HGFMTPKRRV--SGTSIYFESMPYRL--D-ESTGLV-------DYDMLEKTAIL 167 (447)
Q Consensus 108 ---~pg-d~Vl~~~~~~~~~~~----~~~~~~~~~~--~~~g~~~~~~~~~~--~-~~~~~i-------d~~~l~~~~~~ 167 (447)
+++ .+|+...-.|.|.-. .......+.. ...+ +..++.+. . ...+.. ..+++++.+..
T Consensus 154 ~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 231 (473)
T 4e3q_A 154 AEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPG--FVHLTCPHYWRYGEEGETEEQFVARLARELEETIQR 231 (473)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTT--EEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcceEEEeeceECCCccccccccccccccccCCCCCc--ccccCCCcccccccccchhhHHHHHHHHHHHHHHHh
Confidence 243 467777655443210 0000000000 0001 11222111 0 011111 13455555543
Q ss_pred h---CCcEEEEcCC-CCCC-CC----ChHHHHHHHHHhCCEEEEehhhhccccccccC-C-CCCC-cccEEEeCCCcccC
Q 013217 168 F---RPKLIIAGAS-AYPR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR 235 (447)
Q Consensus 168 ~---~~klii~~~~-~~~~-~~----~~~~i~~ia~~~g~~livD~a~~~g~~~~~~~-~-~~~~-~~Di~~~s~~K~l~ 235 (447)
. ++.+|++... ...+ .. =+++|+++|++||+++|+|+++ .|+--.+.. . ..++ ..|+++.+ |.+.
T Consensus 232 ~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~-tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~ 308 (473)
T 4e3q_A 232 EGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVI-CGFGRTGNTWGCVTYDFTPDAIISS--KNLT 308 (473)
T ss_dssp HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTT-TSSSTTSSSCHHHHTTCCCSEEEEC--GGGG
T ss_pred hCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCcc-ccCCcccchhHHHhcCCCCChHHhc--cccc
Confidence 2 3456666522 2223 11 2699999999999999999997 454222210 0 0001 25999877 9885
Q ss_pred C--CCCceEEeecCCcchhhHHHHhhhc------cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 013217 236 G--PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR 307 (447)
Q Consensus 236 G--p~gG~i~~~~~~~~~~~~~~~i~~~------~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (447)
| .+.|.+++++ ++.+.+... ...+.+-+-|+..+++..+.++.+.++++ .+++.+..++|.+.
T Consensus 309 gG~~Pl~av~~~~------~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l---~~~~~~~g~~l~~~ 379 (473)
T 4e3q_A 309 AGFFPMGAVILGP------ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGL---AENVRRLAPRFEER 379 (473)
T ss_dssp TTSSCCEEEEECH------HHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSH---HHHHHHHHHHHHHH
T ss_pred CCCCCcccccccH------HHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccH---HHHHHHHHHHHHHH
Confidence 4 4568888887 676665431 11222222355555555557777665544 55666677778887
Q ss_pred HHHC----CcEeeeCCCCCeeEEecCCC-C----CC-----CHHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCc
Q 013217 308 LVEL----GYKLVSGGSDNHLVLVDLRP-M----GI-----DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA 373 (447)
Q Consensus 308 L~~~----g~~~~~~~~~~~~~~v~~~~-~----~~-----~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~ 373 (447)
|++. .+.-+.+ ..- +.-+++.. . .. -...+.+.+.++|+.++.. ...+|+.++.
T Consensus 380 L~~l~~~~~v~~vRG-~Gl-~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------g~~i~l~PPL 447 (473)
T 4e3q_A 380 LKHIAERPNIGEYRG-IGF-MWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----------GQSVVLCPPF 447 (473)
T ss_dssp HHHHTTSTTEEEEEE-ETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----------TTEEEECCCT
T ss_pred HHHHhcCCCeeEEee-cce-EEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----------CCEEEEeCCC
Confidence 7662 2211111 111 12222211 0 00 1346778888999998532 2479998876
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 374 MTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 374 ~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
..| ++|++++.+++.++|+..
T Consensus 448 ~it----~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 448 ILT----EAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp TCC----HHHHHHHHHHHHHHHHHH
T ss_pred CCC----HHHHHHHHHHHHHHHHHH
Confidence 666 999999999999998754
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.23 E-value=2.9e-10 Score=121.10 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=121.6
Q ss_pred HHHHHHhhh-------hCCcEEEEcCC--CCCCCC--C---hHHHHHHHHHhCCEEEEehhhhccccccccCCC--CCC-
Q 013217 159 DMLEKTAIL-------FRPKLIIAGAS--AYPRDF--D---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK- 221 (447)
Q Consensus 159 ~~l~~~~~~-------~~~klii~~~~--~~~~~~--~---~~~i~~ia~~~g~~livD~a~~~g~~~~~~~~~--~~~- 221 (447)
++|++.+++ .++.+||+.+. +.++.. + +++|+++|++||+++|+|++| .|+...|.... .++
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~-tGfGRtG~~fa~e~~gv 655 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVF-TGFWRLGVETTTELLGC 655 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTT-TTTTTTSBSSTHHHHSS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCc-cccccCCCchhhHhcCC
Confidence 567777652 24567777642 333432 2 799999999999999999997 44322221100 001
Q ss_pred cccEEEeCCCcccCC--CCCceEEeecCCcchhhHHHHhhhc-----cCCCCCCCCcHHHHHHHHHHHHHhcChhHHHHH
Q 013217 222 YCDVVTTTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 294 (447)
Q Consensus 222 ~~Di~~~s~~K~l~G--p~gG~i~~~~~~~~~~~~~~~i~~~-----~~~~~~g~p~~~~~aal~~al~~~~~~~~~~~~ 294 (447)
..|++++| |.|+| .+.|++++++ ++.+.+... ...+.+.+.+....++..++++.+.++++.
T Consensus 656 ~PDiitls--K~L~gG~~Plgav~~~~------~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~--- 724 (831)
T 4a0g_A 656 KPDIACFA--KLLTGGMVPLAVTLATD------AVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN--- 724 (831)
T ss_dssp CCSEEEEC--GGGGTTSSCCEEEEECH------HHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTC---
T ss_pred CCcEEEEe--cccccCccCcEEEEECH------HHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHH---
Confidence 25888655 99965 3558888888 677766432 112222233555555555677776554431
Q ss_pred HHHHHHHH--------HHHHHHHHC-CcEeeeCCCCCeeEEecCCCC-------CCCHHHHHHHHhhcCeEEccCCCCCC
Q 013217 295 NKVVSNCR--------ALASRLVEL-GYKLVSGGSDNHLVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGD 358 (447)
Q Consensus 295 ~~~~~~~~--------~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~L~~~gI~v~~~~~p~~ 358 (447)
+++.++.+ .+.+.+.+. .+..+.+ . ..+..+++... ......+.+.|.++||.++. .
T Consensus 725 ~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg-~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p----~- 797 (831)
T 4a0g_A 725 HNITSQGKTLRELWDEELVQQISSHSAVQRVVV-I-GTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRP----L- 797 (831)
T ss_dssp TTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE-E-TTEEEEEEC---------CHHHHHHHHHHHHTTEECCC----B-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee-c-ccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEe----c-
Confidence 22211111 233445443 2322221 1 12333443211 11234677888899999853 1
Q ss_pred CCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHH
Q 013217 359 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 397 (447)
Q Consensus 359 ~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~ 397 (447)
...||+.++..++ ++|++++.+.|.++++.
T Consensus 798 -----g~~lrl~pp~~~t----~e~id~~~~~l~~~l~~ 827 (831)
T 4a0g_A 798 -----GNVIYLMCGPCTS----PEICRRLLTKLYKRLGE 827 (831)
T ss_dssp -----TTEEEEECCTTCC----HHHHHHHHHHHHHHHTT
T ss_pred -----CCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
Confidence 3589999888777 99999999999988763
No 237
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=62.71 E-value=7.5 Score=31.93 Aligned_cols=52 Identities=13% Similarity=-0.020 Sum_probs=36.7
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhC
Q 013217 141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVG 197 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g 197 (447)
+++++.++. ...++++.+.+.+++|++|.++....+....++++.+.+++.|
T Consensus 46 G~eVi~lG~-----~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 46 GFEVVYTGL-----RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp TCEEECCCS-----BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCC-----CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcC
Confidence 356655433 3788999988888899999998655544445677777777654
No 238
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=60.63 E-value=17 Score=32.52 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=42.7
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC---CCCChHHHHHHHHHhC----CEEEEehh
Q 013217 141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP---RDFDYPRMRQIADAVG----ALLMMDMA 205 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~---~~~~~~~i~~ia~~~g----~~livD~a 205 (447)
+++++.++. .+.++++.+.+.++++++|.++....+ ....+.++.+.+++.| +.+++=++
T Consensus 157 G~eVi~LG~-----~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 157 MIDAYNLGS-----QVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp TEEEEECCS-----SBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred CcEEEECCC-----CCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 477777554 378999998888889999999876665 3345667777777765 55655443
No 239
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=59.31 E-value=15 Score=31.43 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=42.6
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhC----CEEEEehh
Q 013217 141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVG----ALLMMDMA 205 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g----~~livD~a 205 (447)
+++++.++. .+.++++.+.+.+++|++|.++....+....+.++.+.+++.+ +.+++=++
T Consensus 116 G~~v~~LG~-----~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 116 GFTVYNLGV-----DIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp TCEEEECCS-----SBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEEST
T ss_pred CCEEEECCC-----CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEECC
Confidence 467666543 3788999988888899999998655444445777777777765 66666543
No 240
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=54.33 E-value=23 Score=33.66 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=42.0
Q ss_pred CCC-CCHHHHHHHhhh----hCCcEEEEc--CCCCCC----CCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217 153 TGL-VDYDMLEKTAIL----FRPKLIIAG--ASAYPR----DFDYPRMRQIADAVGALLMMDMAHISG 209 (447)
Q Consensus 153 ~~~-id~~~l~~~~~~----~~~klii~~--~~~~~~----~~~~~~i~~ia~~~g~~livD~a~~~g 209 (447)
+|. .+++++..+++. .+++++++. .+.||. ..|+..|..+.+..++++++|.+|+.|
T Consensus 256 ~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D~th~~G 323 (385)
T 3nvt_A 256 RGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHSTG 323 (385)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEEHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEcCCCCCC
Confidence 455 788888776643 256777663 455654 468888988888889999999999765
No 241
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=54.16 E-value=26 Score=31.49 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=40.8
Q ss_pred CCC-CCHHHHHHHhhh----hCCcEEEEc--CCCC---CC-CCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217 153 TGL-VDYDMLEKTAIL----FRPKLIIAG--ASAY---PR-DFDYPRMRQIADAVGALLMMDMAHISG 209 (447)
Q Consensus 153 ~~~-id~~~l~~~~~~----~~~klii~~--~~~~---~~-~~~~~~i~~ia~~~g~~livD~a~~~g 209 (447)
+|. .++++++.+++. .+++++++. .++| +. ..|+..|..+.+.+|+++++|..|+.|
T Consensus 152 ~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~dssH~~g 219 (276)
T 1vs1_A 152 RGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPAG 219 (276)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 455 488888876642 256776653 3344 33 668888988887789999999999877
No 242
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=53.47 E-value=19 Score=33.69 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=40.5
Q ss_pred CCC-CCHHHHHHHhhh----hCCcEEEEc--C---CCCCC-CCChHHHHHHHHHhCCEEEEehhhhcc
Q 013217 153 TGL-VDYDMLEKTAIL----FRPKLIIAG--A---SAYPR-DFDYPRMRQIADAVGALLMMDMAHISG 209 (447)
Q Consensus 153 ~~~-id~~~l~~~~~~----~~~klii~~--~---~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g 209 (447)
+|. .++++++.+++. .+++++++. . ++|+. ..|+..|..+.+.+++++++|..|+.|
T Consensus 220 ~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~~lpVi~dssHs~G 287 (350)
T 1vr6_A 220 RGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGG 287 (350)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhhCCCEEEeCCCCCc
Confidence 454 488888766542 356787772 2 33323 678889888888779999999999876
No 243
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=51.65 E-value=20 Score=32.02 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=41.8
Q ss_pred CCC-CCHHHHHHHhhh----hCCcEEEEc-----CCCCCC-CCChHHHHHHHHHhCCEEEEehhhhccc
Q 013217 153 TGL-VDYDMLEKTAIL----FRPKLIIAG-----ASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGL 210 (447)
Q Consensus 153 ~~~-id~~~l~~~~~~----~~~klii~~-----~~~~~~-~~~~~~i~~ia~~~g~~livD~a~~~g~ 210 (447)
+|. .+++++..++.. .++.++++- .++|+. ..|+..+..+.+..++++++|..|+.|.
T Consensus 137 ~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~ 205 (262)
T 1zco_A 137 RGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGR 205 (262)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCS
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCc
Confidence 444 488888876642 245666653 246765 6788899888887799999999998663
No 244
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=50.28 E-value=12 Score=29.77 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=35.5
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhC
Q 013217 141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVG 197 (447)
Q Consensus 141 ~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g 197 (447)
+++++.++. ...++++.+++.+.++++|.++....+....++++.+..++.|
T Consensus 31 G~~Vi~lG~-----~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 31 GFNVVNIGV-----LSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp TCEEEEEEE-----EECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred CCEEEECCC-----CCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 466666543 3778999888888899999998655444334566666666653
No 245
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=48.87 E-value=51 Score=25.47 Aligned_cols=50 Identities=6% Similarity=-0.134 Sum_probs=37.9
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 155 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 155 ~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
.++.++++.+++. +|.+++++.-.......-.++.+..+++|+-+-+-.+
T Consensus 48 ~l~~~~l~~ll~~-~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T 97 (122)
T 2ab1_A 48 GVQPADVKEVVEK-GVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQT 97 (122)
T ss_dssp CCCHHHHHHHHTT-CCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECH
T ss_pred HCCHHHHHHHhhC-CCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCH
Confidence 4889999999887 8999999854444432457888888999988766544
No 246
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=41.62 E-value=26 Score=30.22 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=42.5
Q ss_pred ceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE--cCCCCCCCCChHHHHHHHHHhC----CEEEEeh
Q 013217 140 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA--GASAYPRDFDYPRMRQIADAVG----ALLMMDM 204 (447)
Q Consensus 140 ~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~--~~~~~~~~~~~~~i~~ia~~~g----~~livD~ 204 (447)
.+++++.++.+ +.++++.+.+.+++|++|.+ +....+....++++.+..++.| +.+++=+
T Consensus 119 ~G~~Vi~LG~~-----vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 119 NGFQIVDLGVD-----VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp TSCEEEECCSS-----CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred CCCeEEEcCCC-----CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 44677776543 78899988888889999999 6544444556788888888775 4555544
No 247
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=41.07 E-value=56 Score=25.12 Aligned_cols=46 Identities=9% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCHHHHHHHhhh--------hCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEE
Q 013217 156 VDYDMLEKTAIL--------FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLM 201 (447)
Q Consensus 156 id~~~l~~~~~~--------~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~li 201 (447)
.|++++.+.+.+ ++-.-|+++.+......|+.+|.++++++|+.++
T Consensus 25 ~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 25 AEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLESPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECCSSCCHHHHHHHHHTTTCEEE
T ss_pred CCHHHHHHHHHHHHHhChHhhCCCcEEEEccccCChHHHHHHHHHHHHcCCEEE
Confidence 577777665543 1333456653333345789999999999999885
No 248
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=38.47 E-value=87 Score=23.01 Aligned_cols=52 Identities=12% Similarity=-0.084 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEcCCCC--CC----CCChHHHHHHHHHhCCEEE-Eehh
Q 013217 154 GLVDYDMLEKTAILFRPKLIIAGASAY--PR----DFDYPRMRQIADAVGALLM-MDMA 205 (447)
Q Consensus 154 ~~id~~~l~~~~~~~~~klii~~~~~~--~~----~~~~~~i~~ia~~~g~~li-vD~a 205 (447)
...+++.|+++++++++..|+++-|-+ ++ .....++++..++.++++. +|+-
T Consensus 36 ~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DER 94 (98)
T 1iv0_A 36 LEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCS
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 456789999999998999999984422 22 3344555554433376654 7764
No 249
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=38.25 E-value=40 Score=29.89 Aligned_cols=86 Identities=8% Similarity=-0.008 Sum_probs=51.1
Q ss_pred CCEEEEecCCCCcccCCCccccccccccccceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHH
Q 013217 110 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM 189 (447)
Q Consensus 110 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i 189 (447)
+.+|++..+.-..|-- +.... ..-+...+++++.++.+ +.++++.+.+.+++|++|.++....+....+.++
T Consensus 123 ~~~vlla~~~gd~Hdi-G~~iv--a~~L~~~G~~Vi~LG~~-----vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~ 194 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDI-GKNIV--TALLRANGYNVVDLGRD-----VPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEV 194 (258)
T ss_dssp SCEEEEEECTTCCCCH-HHHHH--HHHHHHTTCEEEEEEEE-----CCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHH
T ss_pred CCeEEEEeCCCCccHH-HHHHH--HHHHHHCCCEEEECCCC-----CCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHH
Confidence 4577776665444411 10000 00122334677665543 5678888888877999999986655555567788
Q ss_pred HHHHHHhC--CEEEEe
Q 013217 190 RQIADAVG--ALLMMD 203 (447)
Q Consensus 190 ~~ia~~~g--~~livD 203 (447)
.+..++.| +.+++=
T Consensus 195 i~~l~~~~~~~~v~vG 210 (258)
T 2i2x_B 195 NDMLLENGIKIPFACG 210 (258)
T ss_dssp HHHHHTTTCCCCEEEE
T ss_pred HHHHHhcCCCCcEEEE
Confidence 87777654 444443
No 250
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=34.59 E-value=1.2e+02 Score=28.67 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHhhh----hCCcEEEE-cCCCCCC---CCChHHHHHHHHHh-CCEEEEehhhhcc-ccccccCCCCCCc
Q 013217 153 TGLVDYDMLEKTAIL----FRPKLIIA-GASAYPR---DFDYPRMRQIADAV-GALLMMDMAHISG-LVAASVVADPFKY 222 (447)
Q Consensus 153 ~~~id~~~l~~~~~~----~~~klii~-~~~~~~~---~~~~~~i~~ia~~~-g~~livD~a~~~g-~~~~~~~~~~~~~ 222 (447)
+|.-++++++.+++- .+..++++ +.+.||. ..|+..|..+.+.+ ++++ .|..|..| .... .-. -.-+
T Consensus 165 tGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpV-G~SdHt~G~~~~~-~AA-vAlG 241 (385)
T 1vli_A 165 TAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVI-GFSDHSEHPTEAP-CAA-VRLG 241 (385)
T ss_dssp CTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEE-EEEECCSSSSHHH-HHH-HHTT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCE-EeCCCCCCchHHH-HHH-HHcC
Confidence 455688888776542 23477766 4677876 56899999999999 8887 67888877 2211 000 0015
Q ss_pred ccEE--EeCCCcccCCCCC
Q 013217 223 CDVV--TTTTHKSLRGPRG 239 (447)
Q Consensus 223 ~Di~--~~s~~K~l~Gp~g 239 (447)
||++ -++..|++.||-+
T Consensus 242 A~iIEkHftldra~~G~D~ 260 (385)
T 1vli_A 242 AKLIEKHFTIDKNLPGADH 260 (385)
T ss_dssp CSEEEEEBCSCTTSSCSSC
T ss_pred CCEEEeCCCccccCCCCch
Confidence 6754 3677788777655
No 251
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=34.42 E-value=22 Score=25.47 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhCCEEEEehh
Q 013217 186 YPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 186 ~~~i~~ia~~~g~~livD~a 205 (447)
-++|.++|+++|++++.|..
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 37999999999999999975
No 252
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=33.19 E-value=81 Score=24.19 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCC-hHHHHHHHHHhCCEEE
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFD-YPRMRQIADAVGALLM 201 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~-~~~i~~ia~~~g~~li 201 (447)
..++.++++..+.++|++.....| .+ ...|..+|+++|++++
T Consensus 25 ~~~v~kai~~gkakLViiA~D~~~--~~~~~~l~~lc~~~~VP~~ 67 (121)
T 2lbw_A 25 VKEVVKALRKGEKGLVVIAGDIWP--ADVISHIPVLCEDHSVPYI 67 (121)
T ss_dssp HHHHHHHHHHSCCCEEEECTTCSC--TTHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHcCCceEEEEeCCCCH--HHHHHHHHHHHHhcCCcEE
Confidence 466777777768899988643332 34 6778899999999975
No 253
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=32.11 E-value=38 Score=23.99 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEe
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMD 203 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD 203 (447)
..+..++++..+.++|++.....+ .-...|..+|+++|++++.-
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~--~~~~~i~~lc~~~~Ip~~~v 59 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADP--ILTSSVVSLAEDQGISVSMV 59 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCH--HHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 466777787767888888643333 23578888999999988753
No 254
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=30.01 E-value=18 Score=35.17 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=24.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||+|.+
T Consensus 71 ~~~Gt~~df~~lv~~aH~~Gi~VilD~V 98 (496)
T 4gqr_A 71 TRSGNEDEFRNMVTRCNNVGVRIYVDAV 98 (496)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 4556677899999999999999999997
No 255
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=29.67 E-value=65 Score=29.98 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHhh---hhCCcEEEE-cCCCCCC---CCChHHHHHHHHHh-CCEEEEehhhhccccccccCCCCCCccc
Q 013217 153 TGLVDYDMLEKTAI---LFRPKLIIA-GASAYPR---DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFKYCD 224 (447)
Q Consensus 153 ~~~id~~~l~~~~~---~~~~klii~-~~~~~~~---~~~~~~i~~ia~~~-g~~livD~a~~~g~~~~~~~~~~~~~~D 224 (447)
+|.-++++++.+++ .....++++ +.+.||. ..|+..|..+.+.+ ++++ .|..|..|.... .-. -.-+||
T Consensus 155 tGmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpV-g~sdHt~G~~~~-~AA-vAlGA~ 231 (349)
T 2wqp_A 155 TGMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAII-GLSDHTLDNYAC-LGA-VALGGS 231 (349)
T ss_dssp CTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEE-EEECCSSSSHHH-HHH-HHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCE-EeCCCCCcHHHH-HHH-HHhCCC
Confidence 45558888876653 223367766 4677876 56899999999999 8987 578898772111 000 001577
Q ss_pred EE--EeCCCcccCCCCCceEEeec
Q 013217 225 VV--TTTTHKSLRGPRGGMIFFKK 246 (447)
Q Consensus 225 i~--~~s~~K~l~Gp~gG~i~~~~ 246 (447)
++ -++..|++.||-+..=+.++
T Consensus 232 iIEkH~tld~a~~G~D~~~SL~p~ 255 (349)
T 2wqp_A 232 ILERHFTDRMDRPGPDIVCSMNPD 255 (349)
T ss_dssp EEEEEBCSCTTCCSTTGGGCBCHH
T ss_pred EEEeCCCccccCCCCChhhhCCHH
Confidence 64 36778888887664444333
No 256
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=29.19 E-value=1.5e+02 Score=25.59 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=36.3
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 157 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 157 d~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.++++++... ..+.|++....-.....++++.+.+++.|..+++|..
T Consensus 90 ~~~~i~~~~~a-Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~ 137 (229)
T 3q58_A 90 YLQDVDALAQA-GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCS 137 (229)
T ss_dssp SHHHHHHHHHH-TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECS
T ss_pred cHHHHHHHHHc-CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecC
Confidence 45677777765 7888888755433345789999999999999999853
No 257
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=29.08 E-value=1.5e+02 Score=25.64 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=36.2
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 157 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 157 d~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+++++++++.. ..+.|++....-.....++++.+.++++|..+++|..
T Consensus 90 ~~~~i~~~~~~-Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~ 137 (232)
T 3igs_A 90 FLDDVDALAQA-GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCS 137 (232)
T ss_dssp SHHHHHHHHHH-TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECC
T ss_pred cHHHHHHHHHc-CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCC
Confidence 45678777765 7788888755433345789999999999999999853
No 258
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=28.32 E-value=32 Score=25.23 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhCCEEEEehh
Q 013217 186 YPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 186 ~~~i~~ia~~~g~~livD~a 205 (447)
-++|.++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEECHH
Confidence 37999999999999999975
No 259
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=28.32 E-value=31 Score=25.49 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhCCEEEEehh
Q 013217 186 YPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 186 ~~~i~~ia~~~g~~livD~a 205 (447)
-++|.++|+++|++++.|..
T Consensus 44 A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCeEEECHH
Confidence 47999999999999999975
No 260
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=28.01 E-value=1.1e+02 Score=22.45 Aligned_cols=14 Identities=7% Similarity=0.358 Sum_probs=10.1
Q ss_pred hhhCCcEEEEcCCC
Q 013217 166 ILFRPKLIIAGASA 179 (447)
Q Consensus 166 ~~~~~klii~~~~~ 179 (447)
+.++|++|+++..|
T Consensus 73 ~~~~P~vV~vd~~N 86 (97)
T 1uhe_A 73 NAHKPSIVLVDEKN 86 (97)
T ss_dssp HHCCCEEEEECTTS
T ss_pred hcCCCEEEEECCCC
Confidence 35689998887544
No 261
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=27.66 E-value=71 Score=28.76 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=35.5
Q ss_pred CCHHHHHHHh----hhhCCcEEEEc-CCCCCC---CCChHHHHHHHHHh-CCEEEEehhhhc
Q 013217 156 VDYDMLEKTA----ILFRPKLIIAG-ASAYPR---DFDYPRMRQIADAV-GALLMMDMAHIS 208 (447)
Q Consensus 156 id~~~l~~~~----~~~~~klii~~-~~~~~~---~~~~~~i~~ia~~~-g~~livD~a~~~ 208 (447)
.++++++.++ ...+.+++++. .++|+. ..|+..|..+.+.. |+++++|..|+.
T Consensus 145 ~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~ 206 (285)
T 3sz8_A 145 MSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSL 206 (285)
T ss_dssp SCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEEETTTTC
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEEeCCCcc
Confidence 4555444333 23356777764 455544 36899998888877 799999999963
No 262
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=27.60 E-value=33 Score=25.44 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhCCEEEEehh
Q 013217 186 YPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 186 ~~~i~~ia~~~g~~livD~a 205 (447)
-.+|.++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCeecCHH
Confidence 37999999999999999974
No 263
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=27.37 E-value=1.2e+02 Score=21.83 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhcccCCCCccchHHHHHHHHHHHHHHhhC
Q 013217 381 EKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQF 442 (447)
Q Consensus 381 ~~di~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 442 (447)
+|+|..+++-......++-. .+..|. .-+....+++++++...+.+.|
T Consensus 34 ee~MvtvV~DWvnfYinyy~--~~~~Ge------------qqEqdrAlqel~qeL~tl~~pF 81 (102)
T 1z8u_A 34 EEDMVTVVEDWMNFYINYYR--QQVTGE------------PQERDKALQELRQELNTLANPF 81 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TTCCSC------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhccc------------HHHHHHHHHHHHHHHHHHhhHH
Confidence 89999888755555444421 111121 1112246788888888887754
No 264
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=27.19 E-value=84 Score=23.30 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEE
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLM 201 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~li 201 (447)
.+++.+.++..+.++|++.....+. -...|..+|.+++++++
T Consensus 27 ~~~v~kai~~gkaklViiA~D~~~~--~~~~i~~~c~~~~ip~~ 68 (104)
T 4a18_G 27 YKSTIKAIRNGTAKLVFISNNCPTV--RKSEIEYYASLAQISIH 68 (104)
T ss_dssp HHHHHHHHHHTCCCEEEECTTSCHH--HHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHH--HHHHHHHHHHHcCCcEE
Confidence 4777788877788998886433221 25788889999999988
No 265
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=27.18 E-value=1e+02 Score=22.57 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=10.0
Q ss_pred hhhCCcEEEEcCCC
Q 013217 166 ILFRPKLIIAGASA 179 (447)
Q Consensus 166 ~~~~~klii~~~~~ 179 (447)
+.++|++|+++..|
T Consensus 75 ~~~~P~vV~vd~~N 88 (96)
T 1vc3_B 75 RNLKPTVVLVDERN 88 (96)
T ss_dssp TTCCCEEEEECTTC
T ss_pred hcCCCEEEEECCCC
Confidence 45689988887544
No 266
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=26.93 E-value=2e+02 Score=24.40 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=44.7
Q ss_pred hcCeeEecCCCCCCHHHHHHHhhhhhccCCCCCCCCcccCchhHHHHHHHHHHHHHHHHcCCCCC
Q 013217 20 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 84 (447)
Q Consensus 20 ~~~i~l~~~~n~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~le~~~~~~~~~~~g~~~~ 84 (447)
+..+-+.|.+.+.++..++.|...-...+.--.|...+|...+.++++.+....++.+.+|.+++
T Consensus 131 ~~plvl~Paem~~~~~~~~Nm~~L~~~G~~iipp~~g~ya~p~~iediv~~vv~r~ld~lgi~~~ 195 (209)
T 3zqu_A 131 RRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQD 195 (209)
T ss_dssp TCCEEEEECCSSCCHHHHHHHHHHHHHTCEECCSCCCCTTCCCSHHHHHHHHHHHHHHHHTCCCS
T ss_pred CCcEEEEEcccccCHHHHHHHHHHHHCCCEEeCCCcccccCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 34688888899999999998876544333211222234566666777777777889999999864
No 267
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=26.25 E-value=1.3e+02 Score=22.22 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=9.5
Q ss_pred hhCCcEEEEcCCC
Q 013217 167 LFRPKLIIAGASA 179 (447)
Q Consensus 167 ~~~~klii~~~~~ 179 (447)
.++|++|+++..|
T Consensus 75 ~~~P~vv~vd~~N 87 (102)
T 3plx_B 75 TFKPKVVFVDENN 87 (102)
T ss_dssp HCCCEEEEECTTS
T ss_pred cCCCEEEEECCCC
Confidence 4689998887543
No 268
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=26.19 E-value=90 Score=24.40 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=36.3
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 155 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 155 ~id~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
.++.++++.++.. +|.+|+++.-.... ..-.++.+..++.|+-+-+-.+
T Consensus 51 ~l~~e~l~~ll~~-~pevliiGTG~~~~-~l~p~~~~~l~~~GI~vE~m~T 99 (132)
T 2gm2_A 51 QLQPAHMDAVLAL-NPAVILLGTGERQQ-FPSTDVLAACLTRGIGLEAMTN 99 (132)
T ss_dssp GCCTTTSHHHHHH-CCSEEEEECTTSCC-CCCHHHHHHHHHHTCEEEEECH
T ss_pred cCCHHHHHHHHhc-CCCEEEECCCCCCC-cCCHHHHHHHHHcCCEEEEeCH
Confidence 4778888887776 79999998655544 3347788888899988765544
No 269
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=26.05 E-value=87 Score=31.76 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=44.3
Q ss_pred cceeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCC---CCCChHHHHHHHHHhCC----EEEEehh
Q 013217 139 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP---RDFDYPRMRQIADAVGA----LLMMDMA 205 (447)
Q Consensus 139 g~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~klii~~~~~~~---~~~~~~~i~~ia~~~g~----~livD~a 205 (447)
..+++++.++.+ +.++++.+++.++++++|.++....+ ....++++.+.+++.|. .+++=++
T Consensus 632 ~aGFEVIDLGvd-----VPpEeIVeAA~EedADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa 700 (763)
T 3kp1_A 632 KYGVEVHYLGTS-----VPVEKLVDAAIELKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGT 700 (763)
T ss_dssp GGTCEEEECCSS-----BCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECT
T ss_pred hCCCEEEECCCC-----CCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 345788776553 78899988888889999999865544 23456788888888764 5665443
No 270
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=25.98 E-value=26 Score=33.75 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=21.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||.|.+
T Consensus 64 p~~Gt~~df~~lv~~aH~~Gi~VilD~V 91 (441)
T 1lwj_A 64 AEYGSEREFKEMIEAFHDSGIKVVLDLP 91 (441)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3445556788888888888888888876
No 271
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=25.22 E-value=25 Score=34.06 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=24.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||.|.+
T Consensus 59 p~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 86 (448)
T 1g94_A 59 SRGGNRAQFIDMVNRCSAAGVDIYVDTL 86 (448)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4456677899999999999999999987
No 272
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=25.03 E-value=28 Score=34.03 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||.|.+
T Consensus 73 ~~~Gt~~df~~lv~~aH~~Gi~VilD~V 100 (483)
T 3bh4_A 73 TKYGTKSELQDAIGSLHSRNVQVYGDVV 100 (483)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 3455677899999999999999999987
No 273
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=24.20 E-value=30 Score=33.87 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
|.+++..+++++++-||++|+.||.|.+
T Consensus 77 p~~Gt~~df~~Lv~~aH~~Gi~VilD~V 104 (485)
T 1wpc_A 77 TKYGTRSQLQAAVTSLKNNGIQVYGDVV 104 (485)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3455667899999999999999999987
No 274
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=24.08 E-value=30 Score=33.78 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=24.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||.|.+
T Consensus 75 p~~Gt~~df~~lv~~aH~~Gi~VilD~V 102 (480)
T 1ud2_A 75 TKYGTKAQLERAIGSLKSNDINVYGDVV 102 (480)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 3455667899999999999999999987
No 275
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=23.96 E-value=1.1e+02 Score=23.38 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=25.9
Q ss_pred HHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEE
Q 013217 159 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLM 201 (447)
Q Consensus 159 ~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~li 201 (447)
+.++++.+. .+|.|+++. +. .-+++.++|+++|+.++
T Consensus 73 ~~v~e~~~~-g~k~v~~~~----G~-~~~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 73 SEYNYILSL-KPKRVIFNP----GT-ENEELEEILSENGIEPV 109 (122)
T ss_dssp GGHHHHHHH-CCSEEEECT----TC-CCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhc-CCCEEEECC----CC-ChHHHHHHHHHcCCeEE
Confidence 344555555 788877753 21 23799999999999988
No 276
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=23.84 E-value=31 Score=32.85 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||.|.+
T Consensus 63 ~~~Gt~~d~~~lv~~~h~~Gi~VilD~V 90 (405)
T 1ht6_A 63 SKYGNAAELKSLIGALHGKGVQAIADIV 90 (405)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4556667899999999999999999987
No 277
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=23.82 E-value=1.1e+02 Score=27.45 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=34.8
Q ss_pred CHHHHHHHhh----hhCCcEEEEc-CCCCCC---CCChHHHHHHHHHh-CCEEEEehhhh
Q 013217 157 DYDMLEKTAI----LFRPKLIIAG-ASAYPR---DFDYPRMRQIADAV-GALLMMDMAHI 207 (447)
Q Consensus 157 d~~~l~~~~~----~~~~klii~~-~~~~~~---~~~~~~i~~ia~~~-g~~livD~a~~ 207 (447)
+++++..++. ..+++++++- .+.|+. ..|+..|..+.+.. +.++++|..|+
T Consensus 141 t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~~~~~~~~dl~~i~~lk~~~~~~pV~~D~sH~ 200 (280)
T 2qkf_A 141 SPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHS 200 (280)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHHHHTTTCCEEEEHHHH
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHHHhCCCCCEEEECCCC
Confidence 5556655443 2356776663 444443 36888988888877 89999999996
No 278
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=23.80 E-value=30 Score=34.15 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||.|.+
T Consensus 76 p~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 103 (515)
T 1hvx_A 76 TKYGTKAQYLQAIQAAHAAGMQVYADVV 103 (515)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4556677899999999999999999987
No 279
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.79 E-value=91 Score=22.81 Aligned_cols=42 Identities=17% Similarity=-0.015 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEE
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLM 201 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~li 201 (447)
.+++.+.++..+.++|++... .| ..-.+.|..+|++++++++
T Consensus 20 ~~~v~kai~~gka~lViiA~D-~~-~~~~~~i~~~c~~~~ip~~ 61 (99)
T 3j21_Z 20 SNETIRLAKTGGAKLIIVAKN-AP-KEIKDDIYYYAKLSDIPVY 61 (99)
T ss_dssp HHHHHHHHHHTCCSEEEEECC-CC-HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCccEEEEeCC-CC-HHHHHHHHHHHHHcCCCEE
Confidence 467778887778899888643 22 2225688888999999864
No 280
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=23.56 E-value=1.2e+02 Score=23.73 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=34.5
Q ss_pred HHHHHhhhhCCcEEEEcCC-CCCC--CCChHHHHHHHHHhCCEEEEehh
Q 013217 160 MLEKTAILFRPKLIIAGAS-AYPR--DFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 160 ~l~~~~~~~~~klii~~~~-~~~~--~~~~~~i~~ia~~~g~~livD~a 205 (447)
++.+.+...+..+||.... .... ..|...|+..|..++++++...+
T Consensus 65 ~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~la 113 (134)
T 2xw6_A 65 QMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPM 113 (134)
T ss_dssp HHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHH
T ss_pred hHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCHH
Confidence 5666777767888877643 1222 56899999999999999997665
No 281
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=23.44 E-value=85 Score=23.09 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEE
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMM 202 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~liv 202 (447)
.+++.+.++..+.++|++.....+. -...|..+|++++++++.
T Consensus 23 ~~~v~kai~~gka~lViiA~D~~~~--~~~~i~~~c~~~~ip~~~ 65 (101)
T 3on1_A 23 EEQVVKAVQNGQVTLVILSSDAGIH--TKKKLLDKCGSYQIPVKV 65 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCHH--HHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCHH--HHHHHHHHHHHcCCCEEE
Confidence 5777888877688998886433322 357888899999988763
No 282
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=23.21 E-value=87 Score=23.06 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEEE
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMM 202 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~liv 202 (447)
.+++.+.++..+.++|++.....+. -...|..+|++++++++.
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~~~--~~~~i~~~c~~~~vp~~~ 66 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDASSN--TAKKVTDKCNYYKVPYKK 66 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCHH--HHHHHHHHHHHTTCCEEE
T ss_pred hhhhHHHHhcCceeEEEEecccccc--chhhhcccccccCCCeee
Confidence 5778888887788998886433222 357788889999988664
No 283
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=23.21 E-value=1.4e+02 Score=22.57 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=29.7
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCC-hHHHHHHHHHhCCEEE
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFD-YPRMRQIADAVGALLM 201 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~-~~~i~~ia~~~g~~li 201 (447)
..++.+.++..+.++|++.....| .+ ...|..+|+++|++++
T Consensus 32 ~~~v~kal~~gka~lViiA~D~~~--~~~~~~l~~lc~~~~Vp~~ 74 (119)
T 1rlg_A 32 TNETTKAVERGLAKLVYIAEDVDP--PEIVAHLPLLCEEKNVPYI 74 (119)
T ss_dssp HHHHHHHHTTTCCSEEEEESCCSC--STTTTHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCh--HHHHHHHHHHHHHcCCCEE
Confidence 466777777767889888643333 22 5678889999998865
No 284
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=23.20 E-value=1.6e+02 Score=24.99 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCcEEEEcC--CCC-CCCCChHHHHHHHHHhCCEEEE
Q 013217 169 RPKLIIAGA--SAY-PRDFDYPRMRQIADAVGALLMM 202 (447)
Q Consensus 169 ~~klii~~~--~~~-~~~~~~~~i~~ia~~~g~~liv 202 (447)
.|-.|++.- .+- ++.....++.++|++||+.++.
T Consensus 158 ~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 158 QPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp CSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 788888864 433 3477899999999999999873
No 285
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=23.17 E-value=1.3e+02 Score=23.62 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEcCCC--CCCCCC----hHHHHH-HHHHhCCEE-EEehh
Q 013217 154 GLVDYDMLEKTAILFRPKLIIAGASA--YPRDFD----YPRMRQ-IADAVGALL-MMDMA 205 (447)
Q Consensus 154 ~~id~~~l~~~~~~~~~klii~~~~~--~~~~~~----~~~i~~-ia~~~g~~l-ivD~a 205 (447)
+..|++.|++++++.++..|+++-|- +++..+ ..++++ +.+++++++ ++|+-
T Consensus 38 ~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 38 GTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp TEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred cchHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 45789999999999899999998442 223322 233333 333457654 57875
No 286
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=23.04 E-value=32 Score=34.07 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.6
Q ss_pred CCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 179 AYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 179 ~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
.+++..|++++++-||+.|+.||.|.+
T Consensus 75 ~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 101 (549)
T 4aie_A 75 QYGTMADMDELISKAKEHHIKIVMDLV 101 (549)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 444555789999999999999999987
No 287
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=23.01 E-value=33 Score=33.08 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||.|.+
T Consensus 81 ~~~Gt~~df~~lv~~~H~~Gi~VilD~V 108 (435)
T 1mxg_A 81 TRFGSKEELVRLIQTAHAYGIKVIADVV 108 (435)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4455667899999999999999999987
No 288
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=22.60 E-value=1.7e+02 Score=22.64 Aligned_cols=46 Identities=2% Similarity=-0.076 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEE-Eeh
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLM-MDM 204 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~li-vD~ 204 (447)
..+..++++..+.++|++.....| ..-...|..+|++++++++ ++.
T Consensus 29 ~~~v~Kai~~gka~LViiA~D~~p-~~~~~~i~~lc~~~~Ip~~~v~s 75 (126)
T 2xzm_U 29 LHEVLRTIEAKQALFVCVAEDCDQ-GNYVKLVKALCAKNEIKYVSVPK 75 (126)
T ss_dssp HHHHHHHHHHTCCSEEEEESSCCS-TTHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCh-HHHHHHHHHHHHHhCCCEEEECC
Confidence 356666777768899988643322 1224788899999999976 443
No 289
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=22.57 E-value=33 Score=33.43 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||.|.+
T Consensus 92 p~~Gt~~df~~lv~~~H~~Gi~VilD~V 119 (478)
T 2guy_A 92 ENYGTADDLKALSSALHERGMYLMVDVV 119 (478)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4556667899999999999999999987
No 290
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=22.02 E-value=36 Score=33.73 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..|++++++-||++|+.||.|.+
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V 114 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVV 114 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5566677899999999999999999986
No 291
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=21.97 E-value=1.2e+02 Score=27.37 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=34.4
Q ss_pred CHHHHHHHhh----hhCCcEEEEc-CCCCCC---CCChHHHHHHHHHh-CCEEEEehhhh
Q 013217 157 DYDMLEKTAI----LFRPKLIIAG-ASAYPR---DFDYPRMRQIADAV-GALLMMDMAHI 207 (447)
Q Consensus 157 d~~~l~~~~~----~~~~klii~~-~~~~~~---~~~~~~i~~ia~~~-g~~livD~a~~ 207 (447)
++++++.++. ..+++++++- .+.|+. ..|+..|..+.+.. +.++++|..|+
T Consensus 144 t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~~y~~~~~dl~~i~~lk~~~~~~pV~~D~sH~ 203 (292)
T 1o60_A 144 SPSQMGNIVEKIEECGNDKIILCDRGTNFGYDNLIVDMLGFSVMKKASKGSPVIFDVTHS 203 (292)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHHHHTTSCCEEEEHHHH
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHHhhCCCCCEEEECCCc
Confidence 5556655443 2356776664 333432 36899998887777 89999999997
No 292
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=21.66 E-value=89 Score=28.70 Aligned_cols=94 Identities=15% Similarity=0.037 Sum_probs=46.3
Q ss_pred cCCCCEEEEecCCCCcccCCCcccccccc-ccccceeEEEecccC-CCCCC------CCHHHHHHHhhhhCCcEEEEcCC
Q 013217 107 LKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLD-ESTGL------VDYDMLEKTAILFRPKLIIAGAS 178 (447)
Q Consensus 107 ~~pgd~Vl~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~------id~~~l~~~~~~~~~klii~~~~ 178 (447)
++|||+|-+.+|..+.......... ..+ .+...+++++..+.- ...+. -..++|.+++.+...|+|++..-
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~-~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVE-IAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHH-HHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHH-HHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 6899999988887542110000000 001 122233455443221 11111 13445555665546688888644
Q ss_pred CCCC-----CCChHHHHHHHHHhCCEEE--Eehh
Q 013217 179 AYPR-----DFDYPRMRQIADAVGALLM--MDMA 205 (447)
Q Consensus 179 ~~~~-----~~~~~~i~~ia~~~g~~li--vD~a 205 (447)
.|.. .+|++.|. ++.-+++ +|.+
T Consensus 88 G~g~~rlL~~LD~~~i~----~~PK~~~GySDiT 117 (327)
T 4h1h_A 88 GFNSNQLLPYLDYDLIS----ENPKILCGFSDIT 117 (327)
T ss_dssp CSCGGGGGGGCCHHHHH----HSCCEEEECTTHH
T ss_pred chhHHHHhhhcchhhhc----cCCeEEEeccccc
Confidence 4443 35676653 4666666 7765
No 293
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=21.43 E-value=2.6e+02 Score=23.71 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCeEEccCCCCCCCCCCCCCeEEEecCccccCCCCHHHHHHHHHHHHHHHHHH
Q 013217 336 GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 398 (447)
Q Consensus 336 ~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~~~~g~~~~di~~l~~~i~~~l~~~ 398 (447)
-..+++.+.+.++.+++. . .+..||+.+|.+| +|-=+.++..+++..+.+
T Consensus 99 i~~IekAI~~S~LglnP~----~----dG~~Iri~iP~LT-----eErRkelvK~ak~~~E~a 148 (209)
T 4gfq_A 99 IGDIEKAILKADLGLNPS----N----DGTVIRIAFPALT-----EERRRDLVKVVKKYAEEA 148 (209)
T ss_dssp HHHHHHHHHHHTSSCCCE----E----CSSCEEEECCBCC-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCC----c----CCCceeeeCCCcc-----HHHHHHHHHHHHHHHHHH
Confidence 356888888777766432 1 2347999999887 455566666665544433
No 294
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=21.32 E-value=98 Score=28.03 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=35.2
Q ss_pred CCHHHHHHHhh----hhCCcEEEEc-CCCCCC---CCChHHHHHHHHHhCCEEEEehhhhc
Q 013217 156 VDYDMLEKTAI----LFRPKLIIAG-ASAYPR---DFDYPRMRQIADAVGALLMMDMAHIS 208 (447)
Q Consensus 156 id~~~l~~~~~----~~~~klii~~-~~~~~~---~~~~~~i~~ia~~~g~~livD~a~~~ 208 (447)
.++++++.+++ ..+.+++++. .++|+. ..|+..|..+.+ +++++++|..|+.
T Consensus 166 ~t~~ei~~ave~i~~~Gn~~iiL~erg~~y~~~~~~vdl~~i~~lk~-~~~PV~~D~sHsv 225 (298)
T 3fs2_A 166 LAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAG-LGAPVIFDATHSV 225 (298)
T ss_dssp CCGGGHHHHHHHHHTTTCCCEEEEECCEECSSSCEECCTTHHHHHHT-TTSCEEEEHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccCHHHHHHHHH-cCCcEEEcCCCcc
Confidence 46655554433 2356777764 445543 368988888776 9999999999973
No 295
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=21.01 E-value=1.4e+02 Score=25.29 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=27.0
Q ss_pred CCcEEEEcCC-C-CCCCCChHHHHHHHHHhCCEEEE
Q 013217 169 RPKLIIAGAS-A-YPRDFDYPRMRQIADAVGALLMM 202 (447)
Q Consensus 169 ~~klii~~~~-~-~~~~~~~~~i~~ia~~~g~~liv 202 (447)
+|..|++.-. + .+.....+++.++|++||+.++.
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 7888888743 3 24577899999999999998774
No 296
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=20.94 E-value=1.2e+02 Score=22.38 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEE
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLM 201 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~li 201 (447)
.++..+.++..+.++|++..... ..-.+.|..+|.+++++++
T Consensus 27 ~~~v~kai~~gkaklVilA~D~~--~~~~~~i~~~c~~~~ip~~ 68 (105)
T 3u5e_c 27 YKSTVKSLRQGKSKLIIIAANTP--VLRKSELEYYAMLSKTKVY 68 (105)
T ss_dssp HHHHHHHHHTTCCSEEEECTTSC--HHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHcCCceEEEEeCCCC--HHHHHHHHHHHHHcCCCEE
Confidence 57777888777889988864322 1225788889999999998
No 297
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=20.83 E-value=2e+02 Score=23.74 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=35.0
Q ss_pred HHHHHhhhhCCcEEEEcCC-CCCC--CCChHHHHHHHHHhCCEEEEehh
Q 013217 160 MLEKTAILFRPKLIIAGAS-AYPR--DFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 160 ~l~~~~~~~~~klii~~~~-~~~~--~~~~~~i~~ia~~~g~~livD~a 205 (447)
++.+.+...+..+||.... .... ..|...|+..|-.+|++++.-.+
T Consensus 89 qI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~Tnla 137 (178)
T 1vmd_A 89 QIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRS 137 (178)
T ss_dssp HHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHH
T ss_pred hHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHH
Confidence 5667777768899887643 1232 56899999999999999997665
No 298
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=20.82 E-value=1.1e+02 Score=24.05 Aligned_cols=43 Identities=14% Similarity=0.007 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCChHHHHHHHHHhCCEEE
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLM 201 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~~~~i~~ia~~~g~~li 201 (447)
..++.++++..+.++|++.....|. .-...|..+|+++|++++
T Consensus 37 ~~~v~kai~~gkakLViiA~D~~p~-~~~~~l~~lc~~~~VP~~ 79 (134)
T 2ale_A 37 ANEATKTLNRGISEFIIMAADCEPI-EILLHLPLLCEDKNVPYV 79 (134)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCSSG-GGGTHHHHHHHHHTCCEE
T ss_pred chHHHHHHHhCCCeEEEEeCCCCHH-HHHHHHHHHHHhcCCCEE
Confidence 4667777777678888886433332 125678899999999965
No 299
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=20.78 E-value=32 Score=33.63 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCEEEEehh
Q 013217 178 SAYPRDFDYPRMRQIADAVGALLMMDMA 205 (447)
Q Consensus 178 ~~~~~~~~~~~i~~ia~~~g~~livD~a 205 (447)
+.+++..+++++++-||++|+.||.|.+
T Consensus 76 p~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 103 (488)
T 1wza_A 76 PDYGTLEDFHKLVEAAHQRGIKVIIDLP 103 (488)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3445566788999999999999999986
No 300
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=20.66 E-value=1.1e+02 Score=23.34 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCCCCC-hHHHHHHHHHhCCEEE
Q 013217 158 YDMLEKTAILFRPKLIIAGASAYPRDFD-YPRMRQIADAVGALLM 201 (447)
Q Consensus 158 ~~~l~~~~~~~~~klii~~~~~~~~~~~-~~~i~~ia~~~g~~li 201 (447)
..++.++++..+.++|++.....|. + ...|..+|++++++++
T Consensus 34 ~~~v~kai~~gka~lViiA~D~~p~--~~~~~l~~lc~~~~VP~~ 76 (120)
T 1xbi_A 34 ANEVTKAVERGIAKLVIIAEDVKPE--EVVAHLPYLCEEKGIPYA 76 (120)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSSG--GGTTTHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCceEEEEcCCCChH--HHHHHHHHHHHhcCCCEE
Confidence 4667777777678998886433332 2 4677788999998765
No 301
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=20.29 E-value=1.4e+02 Score=25.68 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=26.8
Q ss_pred CCcEEEEcCCC-CCCCCChHHHHHHHHHhCCEEEE
Q 013217 169 RPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMM 202 (447)
Q Consensus 169 ~~klii~~~~~-~~~~~~~~~i~~ia~~~g~~liv 202 (447)
+|..|++.--+ .+.....+++.++|++||+.++.
T Consensus 178 ~Pa~VicEi~~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 178 VPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp CSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 78888886323 24577899999999999998874
No 302
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=20.17 E-value=84 Score=21.51 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhCCC
Q 013217 429 ADLRGRVEALTTQFPI 444 (447)
Q Consensus 429 ~~~~~~v~~~~~~~p~ 444 (447)
..|+++|.+++++.|-
T Consensus 14 ~~Lq~kV~aIV~~~Ps 29 (70)
T 2lh0_A 14 ESLSRKIGTVVRVLPS 29 (70)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCcc
Confidence 4788888888888873
Done!