RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013217
(447 letters)
>gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional.
Length = 475
Score = 886 bits (2292), Expect = 0.0
Identities = 317/450 (70%), Positives = 364/450 (80%), Gaps = 11/450 (2%)
Query: 6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
PE+ +II KEK RQ+K LELIASENFTSRAVMEA+GSCLTNKYSEGLPG RYYGGNEYID
Sbjct: 20 PEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYID 79
Query: 66 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
++ETLCQKRAL AF LD KWGVNVQPLSGSPANF VYTA+L+PHDRIMGLDLPHGGHLS
Sbjct: 80 QIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLS 139
Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
HG+ T +++S TSIYFESMPYRLDESTGL+DYD LEK A+LFRPKLIIAGASAYPRD+D
Sbjct: 140 HGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAGASAYPRDWD 199
Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
Y RMR+IAD VGALLM DMAHISGLVAA A PF+YCDVVTTTTHKSLRGPRGGMIFF+
Sbjct: 200 YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRGGMIFFR 259
Query: 246 KDPVLG--------VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 297
K P + E IN AVFPGLQGGPHNHTI LAV LK A +PEFK YQ +V
Sbjct: 260 KGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQV 319
Query: 298 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 357
+N ALA+RL+ GYKLV+GG+DNHLVL DLRP+G+ G+RVEK+LD+A ITLNKN+VPG
Sbjct: 320 KANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPG 379
Query: 358 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFV 417
D SALVPGG+RIG+PAMT+RG EK+F +A+F+H V I L+ +K G KL+DF +
Sbjct: 380 DSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIALKIQK-EHGKKLKDFKKGL 438
Query: 418 TSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
S +FS ++ LR VE T FP+PG
Sbjct: 439 ESNDFS--KDIEALRAEVEEFATSFPMPGF 466
>gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional.
Length = 452
Score = 753 bits (1947), Expect = 0.0
Identities = 277/442 (62%), Positives = 340/442 (76%), Gaps = 11/442 (2%)
Query: 6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
PE+ E+I KEKERQ + LELIASENFTSRAV+E +GSC TNKY+EGLPG RYYGGNE +D
Sbjct: 20 PELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVD 79
Query: 66 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
++E LCQKRAL AF LD +WGVNVQP SGSPANF VYTA+L+PHDRIMGLDLP GGHL+
Sbjct: 80 KIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLT 139
Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
HGF T K++VS TSIYFES+PY+++E GL+DYD LE+ A FRPKLIIAGASAYPRD D
Sbjct: 140 HGFYTAKKKVSATSIYFESLPYQVNE-KGLIDYDKLEELAKAFRPKLIIAGASAYPRDID 198
Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
Y R R+I D+VGA LM D+AH SGLVAA V+ PF Y DVVTTTTHKSLRGPR G+IF++
Sbjct: 199 YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRSGLIFYR 258
Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
K + ++E+ IN AVFPGLQGGPHNH I +AV LK QSPE+K Y +V+ N +ALA
Sbjct: 259 KK--VKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALA 316
Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPG 365
+ L + GY LV+GG+DNHLVLVDLRP GI G+++EK+LD +I++NKN++PGDKSAL P
Sbjct: 317 AALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPS 376
Query: 366 GIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFM-NFVTSPNFSL 424
G+R+G+PA+TTRG EK+F +ADF+ V++ E +K V G KL DF +P
Sbjct: 377 GVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQKQV-GKKLVDFKKALEKNP---- 431
Query: 425 MNNVADLRGRVEALTTQFPIPG 446
+ LR V +QFP PG
Sbjct: 432 --ELQKLRQEVVEFASQFPFPG 451
>gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase.
Length = 380
Score = 657 bits (1696), Expect = 0.0
Identities = 252/388 (64%), Positives = 296/388 (76%), Gaps = 13/388 (3%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+PE+ +II KEKERQ + +ELIASENFTSRAVMEA+GS LTNKY+EG PGKRYYGG EY+
Sbjct: 5 DPEIFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYAEGYPGKRYYGGCEYV 64
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
DE+ETL Q RA F LD GVNVQPLSGS AN VYTA+L P DRIMGLDLPHGGHL
Sbjct: 65 DEVETLAQDRAKELFGLD----GVNVQPLSGSQANLAVYTALLNPGDRIMGLDLPHGGHL 120
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG+ + +FESMPY +D TGL+DYD LEK A LF+PKLI+AG SAY R
Sbjct: 121 THGYPVNF-----SGKFFESMPYGVDPDTGLIDYDQLEKNAKLFKPKLIVAGTSAYSRLI 175
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
DY R R+IAD VGA LM+DMAHI+GLVAA V+ PF Y VVTTTTHK+LRGPRGGMIFF
Sbjct: 176 DYARFREIADEVGAYLMVDMAHIAGLVAAGVIPSPFPYAHVVTTTTHKTLRGPRGGMIFF 235
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
++ ELE IN+AVFPGLQGGP NH I AV LK A +PEFKVYQ +V+ N +AL
Sbjct: 236 REIL---YELEKKINSAVFPGLQGGPLNHVIAAKAVALKQALTPEFKVYQQQVLKNAKAL 292
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
A L E GYKLVSGG+DNHLVLVDLRP G+DG R EK L+ A+IT NKN++PGD KS V
Sbjct: 293 AEALKERGYKLVSGGTDNHLVLVDLRPKGLDGKRAEKALERANITANKNTIPGDPKSPFV 352
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFI 391
G+R+G+PA+T+RGF E +F +A +I
Sbjct: 353 TSGLRLGTPALTSRGFGEADFEEVAGYI 380
>gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). SHMT
carries out interconversion of serine and glycine; it
catalyzes the transfer of hydroxymethyl group of N5,
N10-methylene tetrahydrofolate to glycine resulting in
the formation of serine and tetrahydrofolate. Both
eukaryotic and prokaryotic SHMT enzymes form tight
obligate homodimers; the mammalian enzyme forms a
homotetramer comprising four pyridoxal phosphate-bound
active sites.
Length = 402
Score = 643 bits (1661), Expect = 0.0
Identities = 237/400 (59%), Positives = 282/400 (70%), Gaps = 13/400 (3%)
Query: 6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
PE+ EII KE ERQ ++LELIASENFTS AVMEA+GS LTNKY+EG PGKRYYGG EY+D
Sbjct: 5 PEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVD 64
Query: 66 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
E+E L +RA F + NVQP SGS AN VY A+L+P D IMGLDL HGGHL+
Sbjct: 65 EIEDLAIERAKKLFGAE----YANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLT 120
Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
HG T +VS + FES+PY +D TGL+DYD LEK A+ F+PKLI+AGASAYPR D
Sbjct: 121 HGSFT---KVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPID 177
Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
+ R R+IAD VGA L++DMAH++GLVA V +P DVVTTTTHK+LRGPRGG+I +
Sbjct: 178 FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTR 237
Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
K EL IN+AVFPGLQGGPH H I AV LK A PEFK Y +VV N +ALA
Sbjct: 238 KG-----ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALA 292
Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS-ALVP 364
L E G+K+VSGG+DNHLVLVDLRP GI G E L+ A IT+NKN++P D S VP
Sbjct: 293 EALKERGFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVP 352
Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKL 404
GIRIG+PAMTTRG E+E IADFI ++ +
Sbjct: 353 SGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAEDVAVA 392
>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid
transport and metabolism].
Length = 413
Score = 608 bits (1571), Expect = 0.0
Identities = 227/442 (51%), Positives = 279/442 (63%), Gaps = 41/442 (9%)
Query: 6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
PE+ E I +E ERQ + +ELIASENFTS AVMEA GS LTNKY+EG PGKRYYGG EY+D
Sbjct: 12 PEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVD 71
Query: 66 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
E+E L +RA F + NVQP SGS AN VY A+L+P D IMGLDL HGGHL+
Sbjct: 72 EVEELAIERAKKLFGAE----YANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLT 127
Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
HG V+ + F + Y +D TGL+DYD +EK A +PKLIIAG SAY R D
Sbjct: 128 HG-----SPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYSRPID 182
Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
+ R R+IAD VGA LM+DMAH++GL+A V +P + DVVTTTTHK+LRGPRGG+I
Sbjct: 183 FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTN 242
Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
+ EL IN+AVFPGLQGGP H I AV K A PEFK Y +VV N +ALA
Sbjct: 243 DE-----ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALA 297
Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
L E G+K+VSGG+DNHLVLVDLR G+ G + E L+ A IT+NKN++P D +S V
Sbjct: 298 EALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVT 357
Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
GIRIG+PA+TTRGF E E IAD I + L+ K V
Sbjct: 358 SGIRIGTPAVTTRGFGEAEMEEIADLIAD----VLDGLKDV------------------- 394
Query: 425 MNNVADLRGRVEALTTQFPIPG 446
A+++ V L +FP+
Sbjct: 395 ---PAEVKEEVAELCRRFPLYK 413
>gnl|CDD|234571 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.
Length = 416
Score = 599 bits (1548), Expect = 0.0
Identities = 221/443 (49%), Positives = 280/443 (63%), Gaps = 39/443 (8%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+PE+ + I +E +RQ + +ELIASENF S AVMEA GS LTNKY+EG PGKRYYGG EY+
Sbjct: 10 DPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYV 69
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D +E L RA F + NVQP SGS AN VY A+LKP D I+G+DL HGGHL
Sbjct: 70 DVVEQLAIDRAKELFGAEY----ANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHL 125
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HG V+ + + + Y +DE TGL+DYD +EK A+ +PKLIIAGASAY R
Sbjct: 126 THG-----SPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPI 180
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
D+ R R+IAD VGA LM+DMAHI+GLVAA V P + DVVTTTTHK+LRGPRGG+I
Sbjct: 181 DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILT 240
Query: 245 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 304
+ EL IN+AVFPG+QGGP H I AV K A PEFK Y +VV N +AL
Sbjct: 241 NDE-----ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKAL 295
Query: 305 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 363
A L E G+++VSGG+DNHLVLVDLR G+ G E L+ A+IT+NKN+VP D +S V
Sbjct: 296 AEALAERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFV 355
Query: 364 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFS 423
GIRIG+PA+TTRGF E E IA+ I + ++ N
Sbjct: 356 TSGIRIGTPAITTRGFKEAEMKEIAELIADVLD------------------------NPD 391
Query: 424 LMNNVADLRGRVEALTTQFPIPG 446
+ +++ V+ L +FP+
Sbjct: 392 DEAVIEEVKEEVKELCKRFPLYK 414
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 590 bits (1523), Expect = 0.0
Identities = 250/459 (54%), Positives = 323/459 (70%), Gaps = 25/459 (5%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+P++ E++ KEK+RQFK +ELIASENF RAVMEA+GS LTNKYSEG+PG RYY GN+YI
Sbjct: 133 DPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYI 192
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
D++E LC +RALAAF LD KWGVNVQP S + ANF VYT +L P DRIMGLD P GGH+
Sbjct: 193 DQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHM 252
Query: 125 SHGFMTPK-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD 183
SHG+ TP ++VSG SI+FES+PY+++ TG +DYD LE+ A+ FRPK++I G S+YPR+
Sbjct: 253 SHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYPRE 312
Query: 184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
+DY R RQIAD GA+LM DMAHISGLVAA +PF YCD+VT+TTHKSLRGPRGG+IF
Sbjct: 313 WDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRGGIIF 372
Query: 244 FKKDPVL---------GVE-----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE 289
++K P L G + E IN AVFP LQGGPHN+ I LA+ LK +PE
Sbjct: 373 YRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPE 432
Query: 290 FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASIT 349
+K Y +V N +ALAS L+ +LV+GG+DNHL+L DL +G+ G EK+ +M IT
Sbjct: 433 YKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHIT 492
Query: 350 LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSK 409
LNK ++ GD + PGG+RIG+PAMT+RG E +F IADF+ +I ++ G
Sbjct: 493 LNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQIASAVQR-EHGKL 551
Query: 410 LQDFMNFVTSPNFSLMNN--VADLRGRVEALTTQFPIPG 446
++F+ L NN + +LR RVEA +QF +PG
Sbjct: 552 QKEFLK-------GLQNNKDIVELRNRVEAFASQFAMPG 583
>gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed.
Length = 416
Score = 525 bits (1354), Expect = 0.0
Identities = 231/446 (51%), Positives = 289/446 (64%), Gaps = 39/446 (8%)
Query: 1 MQACNPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 60
++ + EV I KE ERQ LELIASENFTS AVMEA GS LTNKY+EG PGKRYYGG
Sbjct: 9 LEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGG 68
Query: 61 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 120
E++DE+E L +RA F D NVQP SGS AN VY A+LKP D I+G+ L H
Sbjct: 69 CEFVDEVEALAIERAKQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTILGMSLSH 124
Query: 121 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 180
GGHL+HG +VS + ++ ++ Y +D TGL+DYD +E+ A +PKLIIAG SAY
Sbjct: 125 GGHLTHG-----AKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSAY 179
Query: 181 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 240
PR+ D+ R R+IAD VGALLM+DMAHI+GLVAA +PF + VVTTTTHK+LRGPRGG
Sbjct: 180 PRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGG 239
Query: 241 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 300
MI + E+ IN+AVFPGLQGGP H I AV A PEFK Y +V++N
Sbjct: 240 MILTNDE-----EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIAN 294
Query: 301 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 359
+ALA L E GY LVSGG+DNHL+LVDLRP G+ G E+ L+ A IT+NKN+VPGD +
Sbjct: 295 AQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTE 354
Query: 360 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTS 419
S V GIRIG+PA TTRGF E EF IA++I + L+ + + L+
Sbjct: 355 SPFVTSGIRIGTPAGTTRGFGEAEFREIANWILD----VLDD---LGNAALE-------- 399
Query: 420 PNFSLMNNVADLRGRVEALTTQFPIP 445
+R V+AL ++FPI
Sbjct: 400 ---------QRVRKEVKALCSRFPIY 416
>gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional.
Length = 493
Score = 364 bits (936), Expect = e-122
Identities = 180/480 (37%), Positives = 255/480 (53%), Gaps = 64/480 (13%)
Query: 6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
P + E I +E Q SL+LIASEN++S AV A+G+ LT+KY+EG PG R+Y G + +D
Sbjct: 35 PRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVD 94
Query: 66 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH--------------- 110
+E + A F + VQP SG+ AN + AIL
Sbjct: 95 TVEWEAAEHAKELFGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVN 150
Query: 111 ----------------DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 154
R++G+ L GGHL+HGF R + + F Y +D TG
Sbjct: 151 DLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGF-----RPNISGKMFHQRSYGVDPDTG 205
Query: 155 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS 214
L+DYD + A F+P +++AG SAYPR ++ ++R+IAD VGA+LM+DMAH +GLVA
Sbjct: 206 LLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGK 265
Query: 215 VVA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPH 271
V DP + D+VTTTTHK+LRGPRGG++ KK E A++ P + GGP
Sbjct: 266 VFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK------EYADAVDKGC-PLVLGGPL 318
Query: 272 NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP 331
H + AV L A++PEF+ Y +VV N RALA ++ G +LV+GG+DNHLVL+D+
Sbjct: 319 PHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTS 378
Query: 332 MGIDGARVEKILDMASITLNKNSVPGDKS-ALVPGGIRIGSPAMTTRGFSEKEFVAIADF 390
G+ G + E L A I N+NS+P D + A GIR+G+PA+TT G E +A+
Sbjct: 379 FGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAEL 438
Query: 391 IHEGVE-ITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVAD-LRGRVEALTTQFPI-PGV 447
I + + T SK + VA +R RV L +FP+ P +
Sbjct: 439 IVKVLSNTTPGTTAEGAPSK----AKYELDE------GVAQEVRARVAELLARFPLYPEI 488
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 105 bits (263), Expect = 1e-26
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 15/182 (8%)
Query: 67 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 126
+++ P SG+ AN A+L P D ++ HG
Sbjct: 1 KLEELEEKLARLLQ--PGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRY-- 55
Query: 127 GFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
V+ + +P +D++ G +D +LE+ LI+ +
Sbjct: 56 -------WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVL 108
Query: 186 YP--RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
P +R+IA G LL++D A G A V P DVVT + HK+L G GG++
Sbjct: 109 VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVI 168
Query: 244 FK 245
K
Sbjct: 169 VK 170
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 46.6 bits (111), Expect = 2e-05
Identities = 64/334 (19%), Positives = 117/334 (35%), Gaps = 43/334 (12%)
Query: 53 PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGV---NVQPLSGS-PANFEVYTAILK 108
G Y + + EL + A+A + V + +G+ A + A+L
Sbjct: 27 AGLLGYYPDPGLPEL-----REAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN 81
Query: 109 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF 168
P D ++ +P + + R++G + P LDE G + L + A
Sbjct: 82 PGDEVL---VPDPTYPGYEAAA---RLAGAEVV----PVPLDEEGGFLLDLELLEAAKTP 131
Query: 169 RPKLIIAGASAYP--RDFDYPRMRQIADAV---GALLMMDMAHISGLVAASVVADPFKYC 223
+ KL+ P + ++A+ G L++ D A+ + LV
Sbjct: 132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAY-AELVYDGEPPPALALL 190
Query: 224 D-----VVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG 276
D +V + K+ P R G + + +L + P GP +
Sbjct: 191 DAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELL------ERLKKLLPYTTSGPSTLSQA 244
Query: 277 GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDG 336
A L + + + + AL L ELG +V S + +DL G D
Sbjct: 245 AAAAALDDGEE-HLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPE-GDDE 302
Query: 337 ARVEKILDMASITLNKNSVPGDKSALVPGGIRIG 370
+E++L A + + S G+ G +R+
Sbjct: 303 EFLERLLLEAGVVVRPGSAFGEGG---EGFVRLS 333
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 45.0 bits (107), Expect = 5e-05
Identities = 44/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)
Query: 184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMI 242
+ ++A GAL+++D A +G + V CD + + HK L GP G G++
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL---GCDFLAFSGHKWLLGPTGIGVL 235
Query: 243 FFKKD-------PVLGVELESAINNAVFPGLQGGPHN------HTIG--GLAVCLKHAQS 287
+ +K+ + G + ++ L P + G GLA L +
Sbjct: 236 YVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLE 295
Query: 288 PEFKVYQNKVVSNCRALASRLVELGYKLVSG-GSDNHLVLVDLRPMGIDGARVEKILDMA 346
+ + L L EL + G + +V GI V +LD
Sbjct: 296 IGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEK 355
Query: 347 SITL---NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 396
I + + + P + V IR S + +E++ + + + + +
Sbjct: 356 GIAVRAGHHCAQPLHRLLGVDATIRA-SLHLYN---TEEDVDRLLEALKKALA 404
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 39.6 bits (93), Expect = 0.002
Identities = 64/348 (18%), Positives = 112/348 (32%), Gaps = 66/348 (18%)
Query: 58 YGGNEYIDELETLCQKRALAAFNLDENKWG----VNVQPLSGSPANFEVYTAILK--PHD 111
YG + + EL ALA F V SG+ AN E +L+ P D
Sbjct: 37 YGPTDGLPELRE-----ALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGD 91
Query: 112 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEK--TAILF 168
I+ + + F R++G E + Y L + +D+D LE
Sbjct: 92 AILVPAPTYPSY-IRIF-----RLAG----GEVVRYPLYSSNDFHLDFDALEAALKEATE 141
Query: 169 RPKLIIAG------ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLV-----AASVVA 217
K+++ + + + ++ +A LL++D A+ G V A + A
Sbjct: 142 GNKVVLHTSPHNPTGTVATLE-ELEKLLDLAKEHNILLLVDEAYA-GFVFGSLDAVATRA 199
Query: 218 DPFKYCDVVTTTT-HKS--LRGPRGGMIFFKKDPVLGV-ELESAINNAVFPGLQGGPHNH 273
+ +++ + K+ L G R G I LG + S + P
Sbjct: 200 LLAEGPNLLVVGSFSKAFGLAGWRVGYI-------LGNAAVISQLRKLA------RPFYS 246
Query: 274 TIGGLAVCLKHAQSPEFKVYQNK-----VVSNCRALASRLVELGYKLVSGGSDNHLVLVD 328
+ A P + + + L L G ++ S L+
Sbjct: 247 STHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLSVL--PSQAGFFLLT 304
Query: 329 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT 376
A + +L+ + + S G PG +RI T
Sbjct: 305 GLDPEAALALAQVLLEEVGVYVTPGSSFG-----GPGWLRITVAGGTE 347
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 36.8 bits (86), Expect = 0.015
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 188 RMRQIADAVGALLMMDMAHISGLVAAS--VVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
+R IA G L +D A ++ A +V + Y D V+ + K L P G ++
Sbjct: 153 EIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGLGAPVGSVLAGS 212
Query: 246 KD 247
D
Sbjct: 213 DD 214
>gnl|CDD|225576 COG3033, TnaA, Tryptophanase [Amino acid transport and metabolism].
Length = 471
Score = 37.4 bits (87), Expect = 0.015
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 24/160 (15%)
Query: 189 MRQIADAVGALLMMDMAHIS--------------GLVAASVVADPFKYCDVVTTTTHKSL 234
+ +IA ++MD A + + + + Y D T + K
Sbjct: 211 VYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDG 270
Query: 235 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ--GGPHNHTIGGLAVCLKHAQSPEFKV 292
GG + FK D V E V G GG + LAV L+ + ++
Sbjct: 271 LVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLA 330
Query: 293 YQNKVVSNCRALASRLVELGYKLV--SGGSDNHLVLVDLR 330
++ V+ + LA L E G +V +GG H V VD
Sbjct: 331 HR---VAQVQYLADGLEEAGVPIVQPAGG---HAVFVDAG 364
>gnl|CDD|227010 COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound
transport system, large permease component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 447
Score = 35.4 bits (82), Expect = 0.058
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 20/77 (25%)
Query: 141 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALL 200
+F M L E +GL + D+LE LF P + G AY VGALL
Sbjct: 72 FFTFMGLVL-ERSGLAE-DLLETIGQLFGP---VRGGLAYAVII-----------VGALL 115
Query: 201 MMDMAHISGLVAASVVA 217
A +G+VAASVVA
Sbjct: 116 ----AATTGVVAASVVA 128
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 35.2 bits (81), Expect = 0.061
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 189 MRQIADAVGALLMMDMAHISGLVAAS-----VVADPFKYCDVVTTTTHKSLRGPRGGMIF 243
+ +AD AL+M+D H +G + + + D++T T K+L G GG
Sbjct: 192 ICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTT 251
Query: 244 FKKDPV 249
+K+ V
Sbjct: 252 ARKEVV 257
>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium
transferase] [Amino acid transport and metabolism].
Length = 395
Score = 32.3 bits (74), Expect = 0.50
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 223 CDVVTTTTHKSLRGPRGGMIFFKKD 247
D+V+ + K L GP+ G+I KK+
Sbjct: 214 ADLVSFSGDKLLGGPQAGIIVGKKE 238
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 32.1 bits (74), Expect = 0.66
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 187 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYC------DVVTTTTHKSLRGPRGG 240
P + +AD AL+M+D +H G V + ++ D++T T K+L G GG
Sbjct: 194 PEICDLADKYDALVMVDDSHAVGFVGENGRGTV-EHFGVMDRVDIITGTLGKALGGASGG 252
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 31.8 bits (73), Expect = 0.80
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
Query: 160 MLEKTAILFRPKLIIA-------GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLV- 211
+L + + KLI+ G A P + +A GA+L +D AH G+
Sbjct: 123 LLREARRPYGKKLIVTEGVYSMDGDIA-----PLPELVDLAKKYGAILFVDEAHSVGVYG 177
Query: 212 -AASVVADPFKYC---DVVTTTTHKSLRGPRGGMIFFKKD 247
V + D++ T K+ G GG I K+
Sbjct: 178 PHGRGVEEFGGLTDDVDIIMGTLGKAF-GAVGGYIAGSKE 216
>gnl|CDD|213830 TIGR03576, pyridox_MJ0158, pyridoxal phosphate enzyme, MJ0158
family. Members of this archaeal protein family are
pyridoxal phosphate enzymes of unknown function.
Sequence similarity to SelA, a bacterial enzyme of
selenocysteine biosynthesis, has led to some members
being misannotated as functionally equivalent, but
selenocysteine is made on tRNA in Archaea by a two-step
process that does not involve a SelA homolog [Unknown
function, Enzymes of unknown specificity].
Length = 346
Score = 30.5 bits (69), Expect = 1.7
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 224 DVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE 255
D+V T+T K + GPRGG++ +K+ V ++
Sbjct: 196 DLVVTSTDKLMDGPRGGLLAGRKELVDKIKSV 227
>gnl|CDD|99741 cd00617, Tnase_like, Tryptophanase family (Tnase). This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to tryptophanase (Tnase) and
tyrosine phenol-lyase (TPL). Tnase and TPL are active as
tetramers and catalyze beta-elimination reactions. Tnase
catalyzes degradation of L-tryptophan to yield indole,
pyruvate and ammonia and TPL catalyzes degradation of
L-tyrosine to yield phenol, pyruvate and ammonia.
Length = 431
Score = 30.0 bits (68), Expect = 3.0
Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 23/157 (14%)
Query: 190 RQIADAVGALLMMDMAHI--------------SGLVAASVVADPFKYCDVVTTTTHKSLR 235
R++A G +++D A A + + F Y D T + K
Sbjct: 179 RELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGL 238
Query: 236 GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
GG + + D + + + F GG + LA L+ A ++ ++
Sbjct: 239 VNIGGFLALRDDELYEEARQRVVLYEGFVTY-GGMAGRDMEALAQGLREAVEEDYLRHR- 296
Query: 296 KVVSNCRALASRLVELGYKLV--SGGSDNHLVLVDLR 330
V R L RL E G +V +GG H V +D R
Sbjct: 297 --VEQVRYLGDRLDEAGVPIVEPAGG---HAVFIDAR 328
>gnl|CDD|237314 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase,
PLP-dependent; Provisional.
Length = 460
Score = 29.4 bits (67), Expect = 4.0
Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 39/164 (23%)
Query: 189 MRQIADAVGALLMMDMAHIS--------------GLVAASVVADPFKYCDVVTTTTHKSL 234
+ +IA G +++D A + + + F Y D +T + K
Sbjct: 203 VYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDA 262
Query: 235 RGPRGGMIFFKKDPVLGVELESAINNAV-----FP---GLQGGPHNHTIGGLAVCLKHAQ 286
GG++ F+ + +L + FP GL G + LAV L
Sbjct: 263 MVNIGGLLCFRDE-----DLFTECRTLCILYEGFPTYGGLAG----RDMEALAVGLYEGM 313
Query: 287 SPEFKVYQNKVVSNCRALASRLVELGYKLV--SGGSDNHLVLVD 328
++ Y+ + L L E G + +GG H V VD
Sbjct: 314 DEDYLAYR---IGQVEYLGEGLEEAGVPIQTPAGG---HAVFVD 351
>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc). A C-terminal peptidase
with different substrates in different species including
processing of D1 protein of the photosystem II reaction
center in higher plants and cleavage of a peptide of 11
residues from the precursor form of penicillin-binding
protein in E.coli E.coli and H influenza have the most
distal branch of the tree and their proteins have an
N-terminal 200 amino acids that show no homology to
other proteins in the database [Protein fate,
Degradation of proteins, peptides, and glycopeptides,
Protein fate, Protein modification and repair].
Length = 334
Score = 29.3 bits (66), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 90 VQPLSGSPANFEVYTAILKPHDRIMGLD 117
V P GSPA A +KP D+I+ ++
Sbjct: 67 VSPFEGSPA----EKAGIKPGDKIIKIN 90
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 29.1 bits (66), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 162 EKTAILFRPKLIIAGASAY---PRDFDYPRMRQIADAVGALLMMD 203
E AI+ P I G Y P++F + +R++AD G LL+ D
Sbjct: 221 EVAAIIVEP---IQGEGGYVVPPKNF-FKELRKLADKYGILLIDD 261
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 28.8 bits (65), Expect = 5.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 184 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY----CDVVTTTTHKSLRGPRG 239
+ ++A GAL+++D A +V P D + + HK L GP G
Sbjct: 156 NPVEEIGKLAHEYGALVVVDA-------AQAVGHRPIDVQALGVDFLAFSGHK-LYGPTG 207
Query: 240 -GMIFFKKDPVLGVELE 255
G+++ ++D L +L
Sbjct: 208 IGVLYGRRD--LLEKLP 222
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 28.9 bits (65), Expect = 6.3
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 191 QIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP 248
++A G ++D A +G++ + D++ T HK L GP+G + ++
Sbjct: 161 ELAQENGIFFILDAAQTAGVIPIDMTELAI---DMLAFTGHKGLLGPQGTGGLYIREG 215
>gnl|CDD|226039 COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 427
Score = 28.6 bits (64), Expect = 7.5
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 144 SMPYRLDESTGLVDYDMLEKT-AILFRPKL--IIAGASAYPRDFDYPRMR 190
+R++ G E A P+L I A A PRDF P R
Sbjct: 179 GTTFRVELKDGEARGYGCENYGAKFRLPELGPIGANGLANPRDFKTPVAR 228
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 28.5 bits (64), Expect = 8.6
Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 20/159 (12%)
Query: 224 DVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPH-NHTI-----G 276
D +T HK P G G++ F+ + L I + L GG N TI G
Sbjct: 268 DSITVDGHKYGLAPIGCGVVLFRDEEAL---RRILIFADYY--LPGGGIPNFTILGSRPG 322
Query: 277 GLAVC----LKHAQSPEFKVYQNKVVSNCRALASRLVELG-YKLVSGGSDNHLVLVDLRP 331
A+ L+ ++ ++ + R LA L +LG ++LV ++ L +V R
Sbjct: 323 RQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELV---NEPELPIVAFRL 379
Query: 332 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIG 370
+ + + + K + G +
Sbjct: 380 KDDEDTLADLSERLDRRGWQVPAQLLPKGLAIVFGTHVT 418
>gnl|CDD|222946 PHA02935, PHA02935, Hypothetical protein; Provisional.
Length = 349
Score = 28.5 bits (63), Expect = 8.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 408 SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQF 442
S L+D + T+ N S+ N+ DL GRV LT +
Sbjct: 121 SHLKDGVIVTTTMNISVKANIIDLTGRVRYLTRNY 155
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 28.1 bits (63), Expect = 9.9
Identities = 43/236 (18%), Positives = 72/236 (30%), Gaps = 42/236 (17%)
Query: 27 ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 84
S+ T + ++EA+ + G YG + +LE RA F +
Sbjct: 3 RSDTVTGPTPEMLEAM--------AAANVGDDVYGEDPTTAKLE----ARAAELFGKEAA 50
Query: 85 KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 144
+ SG+ AN A +P ++ H+
Sbjct: 51 LFVP-----SGTAANQLALAAHTQPGGSVI---CHETAHIYT------DEAGAPEFLSGV 96
Query: 145 MPYRLDESTGLVDYDMLEKTAILF------RPKLI-----IAGASAYPRDFDYPRMRQIA 193
+ G + + LE P L+ G + YP D + +A
Sbjct: 97 KLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDE-LKAISALA 155
Query: 194 DAVGALLMMDMAHISGLVAASVVADP--FKYCDVVTTTTHKSLRGPRGGMIFFKKD 247
G L +D A ++ AA VA D V+ K P G ++ +D
Sbjct: 156 KENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRD 211
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,069,692
Number of extensions: 2285083
Number of successful extensions: 1894
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1857
Number of HSP's successfully gapped: 38
Length of query: 447
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 347
Effective length of database: 6,502,202
Effective search space: 2256264094
Effective search space used: 2256264094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)