RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013217
(447 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 504 bits (1299), Expect = e-178
Identities = 272/453 (60%), Positives = 335/453 (73%), Gaps = 11/453 (2%)
Query: 5 NPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 64
+ EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS G PG+RYYGG E+I
Sbjct: 16 DAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHI 75
Query: 65 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 124
DELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP GGHL
Sbjct: 76 DELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHL 135
Query: 125 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 184
+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y R+
Sbjct: 136 THGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNL 195
Query: 185 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 244
DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R GMIF+
Sbjct: 196 DYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFY 255
Query: 245 KKD---------PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 295
++ + LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK YQ
Sbjct: 256 RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQR 315
Query: 296 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 355
+VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI NKN+
Sbjct: 316 QVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTC 375
Query: 356 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK-KLVQGSKLQDFM 414
PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L++F
Sbjct: 376 PGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFK 435
Query: 415 NFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 447
+ + V LR VE+ FP+PG+
Sbjct: 436 EKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 467
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 486 bits (1251), Expect = e-171
Identities = 271/450 (60%), Positives = 338/450 (75%), Gaps = 12/450 (2%)
Query: 6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
PE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +D
Sbjct: 13 PEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVD 72
Query: 66 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
E+E LCQ+RAL AF+LD +WGVNVQP SGSPAN VYTA+L+PHDRIMGLDLP GGHL+
Sbjct: 73 EIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLT 132
Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
HG+M+ +R+S TSI+FESMPY+L+ TGL+DY+ L TA LFRP+LIIAG SAY R D
Sbjct: 133 HGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLID 192
Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
Y RMR++ D V A L+ DMAHISGLVAA V+ PFK+ D+VTTTTHK+LRG R G+IF++
Sbjct: 193 YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYR 252
Query: 246 K-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 296
K DP G E+ E IN AVFP LQGGPHNH I +AV LK A +P F+ Y +
Sbjct: 253 KGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQ 312
Query: 297 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP 356
V+ N RA+A L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ P
Sbjct: 313 VLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCP 372
Query: 357 GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 416
GD+SA+ PGG+R+G+PA+T+R F E +F + DFI EGV I LE K +KLQDF +F
Sbjct: 373 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKLQDFKSF 430
Query: 417 VTSPNFSLMNNVADLRGRVEALTTQFPIPG 446
+ + +A+LR RVE FP+PG
Sbjct: 431 LLK-DSETSQRLANLRQRVEQFARAFPMPG 459
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 450 bits (1158), Expect = e-157
Identities = 198/440 (45%), Positives = 267/440 (60%), Gaps = 38/440 (8%)
Query: 6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRYYGG EY+D
Sbjct: 12 AELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVD 71
Query: 66 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
+E L RA F NVQP SGS ANF VYTA+L+P D ++G++L HGGHL+
Sbjct: 72 IVEQLAIDRAKELFGA----DYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLT 127
Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
HG V+ + + +PY +D TG +DY LEK A +PK+II G SAY D
Sbjct: 128 HG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVD 181
Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GPRGG+I K
Sbjct: 182 WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAK 241
Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
+ +N+AVFPG QGGP H I G AV LK A PEFK YQ +V N +A+
Sbjct: 242 GGSEELYK---KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV 298
Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
+E GYK+VSGG+DNHL LVDL + G + L A+IT+NKNSVP D KS V
Sbjct: 299 EVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVT 358
Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
GIR+G+PA+T RGF E E +A ++ + ++ + +
Sbjct: 359 SGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVI-------------------- 398
Query: 425 MNNVADLRGRVEALTTQFPI 444
++G+V + ++P+
Sbjct: 399 ----ERIKGKVLDICARYPV 414
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 443 bits (1140), Expect = e-155
Identities = 201/435 (46%), Positives = 263/435 (60%), Gaps = 40/435 (9%)
Query: 6 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID 65
P+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG EY+D
Sbjct: 9 PQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVD 68
Query: 66 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 125
+E L ++RA F NVQP SG+ AN VY +L+ D ++G++L HGGHL+
Sbjct: 69 IVEELARERAKQLFGA----EHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLT 124
Query: 126 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 185
HG V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAYPR D
Sbjct: 125 HGSP-----VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 186 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFK 245
+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGGMI +
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239
Query: 246 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA 305
+ I+ A+FPG+QGGP H I AV A +FK Y +VV N + LA
Sbjct: 240 EQ------FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLA 293
Query: 306 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVP 364
S L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +S V
Sbjct: 294 SALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVT 353
Query: 365 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSL 424
GIRIG+ A+TTRGF +E IA I ++ N
Sbjct: 354 SGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK------------------------NVGS 389
Query: 425 MNNVADLRGRVEALT 439
+ + R RV ALT
Sbjct: 390 EQALEEARQRVAALT 404
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 167 bits (424), Expect = 2e-47
Identities = 61/461 (13%), Positives = 125/461 (27%), Gaps = 82/461 (17%)
Query: 10 EIITKEKERQFKSLELIASEN---FTSRAVM------EAVGSCLTNKYSEGLPGKRYYGG 60
E + + + + + N S V G+ + + + G + G
Sbjct: 13 EPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSG 72
Query: 61 NEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTAILKPHDRIMGLDL 118
+ L ++ +G + G A ++K ++ GLD
Sbjct: 73 SRSYYALA-----ESVKNI------FGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 119 PHGGHLSHGFMTPKR---RVSGTS-----IYFESMPYRLDESTGLVDYDMLEKTAILFRP 170
S+ F + +++G + I + G D + LE+ P
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 171 KLII---------AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-------- 213
+ + + M IA ++MD A +
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241
Query: 214 ------SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ 267
+ + +KY D++ + K P GG++ K D V + +
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVY---TECRTLCVVQE 298
Query: 268 GGPHNHTIGGLAVCLKHAQSPEF--KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV 325
G P + G A+ + + ++ + L L E +V + H
Sbjct: 299 GFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEE--IGVVCQQAGGHAA 356
Query: 326 LVDLRPMGID--------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP----- 372
VD + A ++ +A I + G
Sbjct: 357 FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL 416
Query: 373 AMTTRGFSEKEFVAIADFIHE---------GVEITLEAKKL 404
+ +++ I + G+ T E K L
Sbjct: 417 TIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVL 457
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 146 bits (368), Expect = 1e-39
Identities = 58/421 (13%), Positives = 118/421 (28%), Gaps = 74/421 (17%)
Query: 40 VGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 99
+ ++++ + G Y G+ +L+ +A FN D + G A
Sbjct: 53 TNAMSDHQWAAMITGDEAYAGSRNYYDLK----DKAKELFNYDYI-----IPAHQGRGAE 103
Query: 100 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM------PYRLDEST 153
++ +LK + P H T + D+
Sbjct: 104 NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWK 163
Query: 154 GLVDYDMLEKTA---------ILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDM 204
G D L++ + + + + +IA G ++MD
Sbjct: 164 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 223
Query: 205 AHISGLVA--------------ASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL 250
A V+ D +KY D +T + K GG++ + + +
Sbjct: 224 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEI 283
Query: 251 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE--FKVYQNKVVSNCRALASRL 308
+ ++G + G + E + Y + + + L RL
Sbjct: 284 FT-----LARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL 338
Query: 309 VELGYKLVSGGSDNHLVLVDLRPMGID--------GARVEKILDMASITLNKNSVP---- 356
E G + H V VD + + A + + + + +
Sbjct: 339 REAGIPIQYPT-GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR 397
Query: 357 ----GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE---------GVEITLEAKK 403
G++ +R+ R ++ IAD + G+E E
Sbjct: 398 DPATGEQKHADMEFMRLTIA---RRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPV 454
Query: 404 L 404
L
Sbjct: 455 L 455
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 139 bits (350), Expect = 3e-37
Identities = 55/417 (13%), Positives = 100/417 (23%), Gaps = 53/417 (12%)
Query: 20 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-------EYIDELETLC- 71
FKSL+ S G K+ G ++G L L
Sbjct: 4 FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63
Query: 72 --------QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGH 123
+K A +N D+ S AN V +A++ D ++ H
Sbjct: 64 HEGPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119
Query: 124 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK----------LI 173
+ R + D + + A P+ +
Sbjct: 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAV 179
Query: 174 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA----------DPFKYC 223
I + ++ + + + + D A + ++ P
Sbjct: 180 IQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPG 239
Query: 224 DVVTTTTHKSLRGPRGGMIFFKKD----PVLGVELESAINNAVFPGLQGGPHNHTIGGLA 279
+V + HK G KKD L NN+ + P L
Sbjct: 240 IIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD 299
Query: 280 VCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-------GYKLVSGGSDNHLVLVDLRPM 332
V + + + ++ +L++ +V+G D+
Sbjct: 300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANN 359
Query: 333 GIDGARVEKILDMASITLNKNSVPGD--KSALVPGGIRIGSPAMTTRGFSEKEFVAI 387
+ A N D K L GI + G
Sbjct: 360 IDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANY 416
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 127 bits (320), Expect = 5e-33
Identities = 58/407 (14%), Positives = 105/407 (25%), Gaps = 71/407 (17%)
Query: 48 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTA 105
++ + G Y G+E LE + + +G V G A +
Sbjct: 61 WAGMMIGDEAYAGSENFYHLE-----KTVKEL------FGFKHIVPTHQGRGAENLLSQL 109
Query: 106 ILKPHDRIMG---LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 162
+KP + G +G G +D + L
Sbjct: 110 AIKPGQYVAGNMYFTTTRFHQEKNGA-----TFVDIVRDEAHDASLNLPFKGDIDLNKLA 164
Query: 163 K---------TAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHIS----- 208
A + + + + ++A G + D
Sbjct: 165 TLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYF 224
Query: 209 ---------GLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 259
+ +V + F Y D T + K GG + D + + +
Sbjct: 225 IKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCM-NDEEMFSAAKELVV 283
Query: 260 NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG 319
GG + +A+ L+ A E Y V R L +L E G +V
Sbjct: 284 VYEGMPSYGGLAGRDMEAMAIGLREAMQYE---YIEHRVKQVRYLGDKLREAGVPIVEPT 340
Query: 320 SDNHLVLVDLRPM--------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 371
H V +D R + I + + + + G
Sbjct: 341 -GGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPK 399
Query: 372 P-----AMTTRGFSEKEFVAIADFIHE---------GVEITLEAKKL 404
+ R ++ +AD I + G+ E K+L
Sbjct: 400 LETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQL 446
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 59.0 bits (141), Expect = 4e-10
Identities = 58/357 (16%), Positives = 110/357 (30%), Gaps = 42/357 (11%)
Query: 27 ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 84
S+ T + + +A+ ++ G YG + I+ELE R A
Sbjct: 5 RSDTVTKPTEEMRKAM--------AQAEVGDDVYGEDPTINELE-----RLAAET---FG 48
Query: 85 KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 144
K P SG+ N A + D ++ H G M V + ++
Sbjct: 49 KEAALFVP-SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN 107
Query: 145 MPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMM 202
D+ + + +T+++ + + IA G + +
Sbjct: 108 GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 167
Query: 203 DMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 260
D A I AS V + Y D V K L P G ++ +D
Sbjct: 168 DGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRD----------FIE 217
Query: 261 AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS 320
+ G+ + + N R LA +L E+GY +
Sbjct: 218 RARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDV 277
Query: 321 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 377
++V++ + ++ + L + + N A+ IR+ + +R
Sbjct: 278 KTNMVILRTDNLKVNAHGFIEALRNSGVLAN---------AVSDTEIRLVTHKDVSR 325
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 49.9 bits (118), Expect = 3e-07
Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 31/303 (10%)
Query: 60 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 119
G + L + L+ + P+S + +A K + + +
Sbjct: 107 GASIMYALTNKILESFFKQLGLNVHAIAT---PISTGMSISLCLSAARKKYGSNVVI--- 160
Query: 120 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-----TAILFRPKLII 174
+ SH G ++ + LD V + +E + RP ++
Sbjct: 161 -YPYASHKSPIKAVSFVGMNMRL--VETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 217
Query: 175 AGASAYPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAAS--VVADPFKYCDVVTTTTH 231
PR+ D + +I + +++ A+ + D V +++
Sbjct: 218 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSD 277
Query: 232 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 291
K+L P GG + + D E I+ + P +T+ L K
Sbjct: 278 KNLLTPIGGGLVYSTDA----EFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVK 333
Query: 292 VYQNKVVSNCRALASRLVELGYKL----------VSGGSDNHLVLVDLRPMGIDGARVEK 341
+N L + G K +S SD + L + + G R K
Sbjct: 334 NQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIK 393
Query: 342 ILD 344
D
Sbjct: 394 KTD 396
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 49.0 bits (115), Expect = 6e-07
Identities = 56/385 (14%), Positives = 120/385 (31%), Gaps = 31/385 (8%)
Query: 19 QFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET--LCQK--R 74
F +++ + + + +A+ ++ +G + +DE++T +
Sbjct: 1 DFINIDPLQTGGKLTEEARQAL-----LEWGDGYSVCDFCTTG-RLDEIKTPPIHDFIHN 54
Query: 75 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR 134
L F V A F V ++ K ++ + H
Sbjct: 55 QLPKF---LGCDVARVTN-GAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNI 110
Query: 135 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIAD 194
+ + ++ +L LI Y D ++ ++
Sbjct: 111 ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLA---LITYPDGNYGNLPDVKKIAKVCS 167
Query: 195 AVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL 254
L+++ A+ G + S+ D + + HKS+ + K+ + L
Sbjct: 168 EYDVPLLVNGAYAIGRMPVSL---KEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVL 224
Query: 255 ESAIN--NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG 312
+ N L TI L H + E ++ V R A+ + +LG
Sbjct: 225 RRSEKYKNKEVELLGCTARGATIITLMASFPHVR--ERIKRWDEEVEKARRFAAEMEKLG 282
Query: 313 YKLVSGGSDNHLVLVDLRPMGID-GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 371
K + NH ++ + + + + L + G K PG R
Sbjct: 283 IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIK----PGLTRYFK 338
Query: 372 PAMTTRGFSEKEFVAIADFIHEGVE 396
++T G S++E + + E +E
Sbjct: 339 --LSTYGLSDEEVDYVLNAFKEIIE 361
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 35.9 bits (82), Expect = 0.008
Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 16/155 (10%)
Query: 94 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 153
S AN ++ +L D I+ L H + + +R + + + RL E+
Sbjct: 113 SCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAR 172
Query: 154 GLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY-PRMRQIADAVGALLMMDMAHISGLV- 211
+L + G + + +AD AL+M+D +H G V
Sbjct: 173 EAGARHVL----------IATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVG 222
Query: 212 ----AASVVADPFKYCDVVTTTTHKSLRGPRGGMI 242
+ D D++T T K+L G GG
Sbjct: 223 ENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYT 257
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA
{Deinococcus radiodurans [TaxId: 1299]}
Length = 201
Score = 27.1 bits (59), Expect = 3.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 301 CRALASRLVELGYKLVSGGS 320
R R VEL KL+ GGS
Sbjct: 182 IRHQVRRQVELTAKLLEGGS 201
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor
protein-binding family A member 1 (APBA1, X11) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 25.5 bits (56), Expect = 4.4
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 87 GVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 146
G+ + G A ++ RI+ ++ H + + I+ ++MP
Sbjct: 22 GIICSLMRGGIA----ERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 77
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 90
Score = 25.4 bits (56), Expect = 5.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 296 KVVSNCRALASRLVELGYKLV-----SGGSDNHL-VLVDLRPMGID 335
+V R + ++E ++LV GSD L + VD +P GI
Sbjct: 9 TIVELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFVD-KPEGIT 53
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase
CheR, N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 81
Score = 24.7 bits (54), Expect = 7.8
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 374 MTTR-GFSEKEFVAIADFIHEGVEITLEAKK--LVQGSKLQDFMNFVTSPNFS-----LM 425
MT R S+ F I I++ I L K +V ++L + + +F L
Sbjct: 6 MTQRLALSDAHFRRICQLIYQRAGIVLADHKRDMVY-NRLVRRLRALGLDDFGRYLSMLE 64
Query: 426 NN--VADLRGRVEALTT 440
N A+ + + ALTT
Sbjct: 65 ANQNSAEWQAFINALTT 81
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 26.3 bits (57), Expect = 9.0
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 165 AILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMD 203
A + P AG ++ + I L + D
Sbjct: 189 AFIVEPIQGEAGVIVPSDNY-LQGVYDICKKYNVLFVAD 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,649,185
Number of extensions: 75988
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 19
Length of query: 447
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,199,356
Effective search space: 430568804
Effective search space used: 430568804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)