Query 013218
Match_columns 447
No_of_seqs 241 out of 2161
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05704 dihydrolipoamide succ 100.0 2.1E-90 4.5E-95 708.8 45.2 403 24-446 3-407 (407)
2 TIGR01347 sucB 2-oxoglutarate 100.0 2.8E-90 6.1E-95 706.3 45.5 401 24-446 1-403 (403)
3 PLN02528 2-oxoisovalerate dehy 100.0 1.9E-89 4.2E-94 704.1 45.7 416 26-447 1-416 (416)
4 PLN02744 dihydrolipoyllysine-r 100.0 1.3E-88 2.8E-93 708.8 42.8 415 4-444 97-539 (539)
5 TIGR02927 SucB_Actino 2-oxoglu 100.0 3.2E-87 6.9E-92 714.5 44.2 414 23-441 135-584 (590)
6 TIGR01348 PDHac_trf_long pyruv 100.0 6E-86 1.3E-90 699.7 45.5 413 23-444 116-546 (546)
7 TIGR01349 PDHac_trf_mito pyruv 100.0 1.1E-85 2.4E-90 679.7 45.3 403 26-444 2-435 (435)
8 COG0508 AceF Pyruvate/2-oxoglu 100.0 1.6E-83 3.5E-88 657.4 38.2 402 23-445 2-404 (404)
9 PRK11854 aceF pyruvate dehydro 100.0 2.5E-82 5.4E-87 683.7 45.9 414 22-444 205-633 (633)
10 PRK11855 dihydrolipoamide acet 100.0 1.7E-81 3.7E-86 668.6 46.1 417 22-444 118-547 (547)
11 KOG0557 Dihydrolipoamide acety 100.0 1.5E-81 3.3E-86 625.8 34.2 410 20-444 35-470 (470)
12 PLN02226 2-oxoglutarate dehydr 100.0 2.4E-80 5.3E-85 634.5 41.6 374 19-445 87-462 (463)
13 PRK11856 branched-chain alpha- 100.0 8.6E-80 1.9E-84 636.3 46.2 398 24-445 3-411 (411)
14 KOG0558 Dihydrolipoamide trans 100.0 3E-81 6.4E-86 598.1 28.0 428 6-447 47-474 (474)
15 PTZ00144 dihydrolipoamide succ 100.0 3.7E-79 8E-84 622.1 40.0 379 17-446 38-418 (418)
16 PRK14843 dihydrolipoamide acet 100.0 1.5E-71 3.3E-76 557.7 29.7 298 135-444 48-347 (347)
17 PRK11857 dihydrolipoamide acet 100.0 3E-71 6.5E-76 546.7 30.8 302 136-444 2-305 (306)
18 KOG0559 Dihydrolipoamide succi 100.0 9.1E-72 2E-76 535.6 23.6 388 18-446 67-457 (457)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 2.6E-60 5.7E-65 453.3 23.7 228 215-444 3-231 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 8E-49 1.7E-53 417.7 23.3 223 215-437 114-349 (1228)
21 PRK13757 chloramphenicol acety 99.9 3.9E-25 8.4E-30 208.4 21.7 181 238-438 30-214 (219)
22 PF00302 CAT: Chloramphenicol 99.9 3.5E-25 7.7E-30 207.4 20.8 178 237-433 24-206 (206)
23 COG4845 Chloramphenicol O-acet 99.9 1.9E-20 4.2E-25 169.3 18.0 189 234-442 24-217 (219)
24 PF00364 Biotin_lipoyl: Biotin 99.7 6.2E-18 1.3E-22 133.2 9.1 74 24-97 1-74 (74)
25 PRK14875 acetoin dehydrogenase 99.7 1.7E-17 3.7E-22 168.3 12.2 119 24-170 3-121 (371)
26 PRK06748 hypothetical protein; 99.6 1.6E-15 3.4E-20 120.9 9.7 63 37-99 12-75 (83)
27 PRK05889 putative acetyl-CoA c 99.5 5.6E-14 1.2E-18 109.7 9.4 63 36-98 9-71 (71)
28 PRK11892 pyruvate dehydrogenas 99.5 1.4E-13 3E-18 143.8 12.8 79 24-102 3-82 (464)
29 cd06663 Biotinyl_lipoyl_domain 99.5 1.6E-13 3.6E-18 107.5 9.7 72 26-97 2-73 (73)
30 COG0511 AccB Biotin carboxyl c 99.5 9.1E-14 2E-18 122.8 8.2 63 36-98 77-139 (140)
31 PRK08225 acetyl-CoA carboxylas 99.4 7.4E-13 1.6E-17 103.1 9.0 63 36-98 8-70 (70)
32 PRK11854 aceF pyruvate dehydro 99.4 1.5E-12 3.3E-17 141.6 12.9 75 24-100 3-77 (633)
33 PF02817 E3_binding: e3 bindin 99.4 2.5E-13 5.5E-18 92.6 4.1 38 135-172 2-39 (39)
34 TIGR02927 SucB_Actino 2-oxoglu 99.4 3.1E-12 6.7E-17 137.8 11.2 77 24-100 3-79 (590)
35 PRK06549 acetyl-CoA carboxylas 99.3 4.8E-12 1E-16 109.7 9.2 62 36-97 68-129 (130)
36 PRK11855 dihydrolipoamide acet 99.3 1.5E-11 3.4E-16 131.8 12.2 78 24-102 3-80 (547)
37 PRK05641 putative acetyl-CoA c 99.3 1.3E-11 2.8E-16 110.3 9.0 62 36-97 91-152 (153)
38 PRK07051 hypothetical protein; 99.3 4.5E-11 9.7E-16 95.6 10.0 69 24-98 4-79 (80)
39 TIGR01348 PDHac_trf_long pyruv 99.2 3.3E-11 7.2E-16 128.9 10.6 75 25-100 2-76 (546)
40 cd06850 biotinyl_domain The bi 99.2 6.2E-11 1.3E-15 90.5 9.1 62 36-97 6-67 (67)
41 PLN02983 biotin carboxyl carri 99.2 3.9E-11 8.4E-16 114.1 8.8 62 37-98 205-273 (274)
42 TIGR00531 BCCP acetyl-CoA carb 99.2 5.2E-11 1.1E-15 107.1 8.5 62 37-98 88-156 (156)
43 cd06849 lipoyl_domain Lipoyl d 99.2 4.3E-10 9.3E-15 86.1 10.9 73 25-97 2-74 (74)
44 PRK06302 acetyl-CoA carboxylas 99.1 1.4E-10 3E-15 104.3 8.6 62 37-98 87-155 (155)
45 PRK14042 pyruvate carboxylase 99.1 2.7E-10 5.8E-15 122.1 9.7 64 36-99 532-595 (596)
46 TIGR02712 urea_carbox urea car 99.0 1.7E-09 3.7E-14 125.0 9.5 63 36-98 1139-1201(1201)
47 TIGR01108 oadA oxaloacetate de 98.9 1.9E-09 4E-14 115.9 7.7 59 36-94 524-582 (582)
48 PRK14040 oxaloacetate decarbox 98.9 3.3E-09 7.2E-14 114.1 9.3 62 36-97 531-592 (593)
49 TIGR01235 pyruv_carbox pyruvat 98.9 4.2E-09 9.2E-14 120.7 9.0 63 36-98 1081-1143(1143)
50 PRK09282 pyruvate carboxylase 98.8 1.1E-08 2.4E-13 110.3 9.1 63 36-98 529-591 (592)
51 COG4770 Acetyl/propionyl-CoA c 98.8 1.3E-08 2.8E-13 105.5 8.7 62 37-98 583-644 (645)
52 PRK12999 pyruvate carboxylase; 98.7 3.5E-08 7.6E-13 113.7 9.2 63 36-98 1083-1145(1146)
53 COG1038 PycA Pyruvate carboxyl 98.6 7.5E-08 1.6E-12 103.0 6.0 62 37-98 1087-1148(1149)
54 KOG0369 Pyruvate carboxylase [ 98.3 1.1E-06 2.3E-11 92.6 6.3 62 37-98 1114-1175(1176)
55 cd06848 GCS_H Glycine cleavage 98.2 3.5E-06 7.6E-11 69.6 5.9 66 21-87 13-79 (96)
56 KOG0238 3-Methylcrotonyl-CoA c 98.0 3.6E-06 7.8E-11 86.5 4.3 62 37-98 609-670 (670)
57 TIGR03077 not_gcvH glycine cle 97.9 1.9E-05 4.2E-10 66.7 6.0 63 22-85 15-78 (110)
58 PRK09783 copper/silver efflux 97.8 7.2E-05 1.6E-09 77.8 9.5 66 36-101 130-244 (409)
59 PRK00624 glycine cleavage syst 97.8 4.6E-05 1E-09 64.8 6.2 59 22-81 17-76 (114)
60 KOG0368 Acetyl-CoA carboxylase 97.8 3.4E-05 7.5E-10 87.3 6.5 67 34-101 690-756 (2196)
61 PRK13380 glycine cleavage syst 97.7 4.5E-05 9.8E-10 67.7 5.5 62 22-84 29-91 (144)
62 TIGR00998 8a0101 efflux pump m 97.7 9.3E-05 2E-09 74.6 8.3 35 67-101 205-239 (334)
63 PRK14843 dihydrolipoamide acet 97.7 3.2E-05 7E-10 78.4 4.0 42 135-176 5-46 (347)
64 PRK10559 p-hydroxybenzoic acid 97.7 7.9E-05 1.7E-09 74.7 6.8 65 36-100 54-188 (310)
65 PRK01202 glycine cleavage syst 97.7 0.00014 3E-09 63.3 7.1 78 22-100 22-107 (127)
66 TIGR01730 RND_mfp RND family e 97.6 0.00011 2.4E-09 73.2 6.7 65 36-100 33-168 (322)
67 PRK10476 multidrug resistance 97.6 0.00015 3.2E-09 73.7 7.5 34 68-101 210-243 (346)
68 PRK15136 multidrug efflux syst 97.4 0.00039 8.5E-09 71.9 8.1 35 67-101 216-250 (390)
69 PRK09578 periplasmic multidrug 97.4 0.00039 8.4E-09 71.8 7.4 65 36-100 70-207 (385)
70 PRK15030 multidrug efflux syst 97.4 0.00031 6.7E-09 72.8 6.5 64 36-99 72-208 (397)
71 PRK03598 putative efflux pump 97.3 0.00038 8.3E-09 70.2 6.7 34 67-100 204-237 (331)
72 PF13533 Biotin_lipoyl_2: Biot 97.3 0.00031 6.7E-09 50.8 4.3 34 67-100 3-36 (50)
73 TIGR00527 gcvH glycine cleavag 97.3 0.00034 7.4E-09 60.8 5.0 60 23-83 22-82 (127)
74 PRK09859 multidrug efflux syst 97.3 0.00064 1.4E-08 70.2 7.5 65 36-100 68-205 (385)
75 PF13533 Biotin_lipoyl_2: Biot 97.3 0.00056 1.2E-08 49.4 5.0 29 36-64 9-37 (50)
76 PRK11556 multidrug efflux syst 97.1 0.001 2.2E-08 69.4 7.2 64 36-99 94-230 (415)
77 PRK11578 macrolide transporter 97.1 0.0014 3.1E-08 67.1 7.8 65 36-100 68-220 (370)
78 PF01597 GCV_H: Glycine cleava 96.9 0.0017 3.7E-08 56.0 5.8 44 38-81 31-75 (122)
79 PRK12784 hypothetical protein; 96.9 0.0049 1.1E-07 47.9 7.2 65 36-100 12-77 (84)
80 TIGR02971 heterocyst_DevB ABC 96.9 0.0034 7.3E-08 63.2 8.1 32 68-100 206-237 (327)
81 PF12700 HlyD_2: HlyD family s 96.7 0.0013 2.8E-08 65.7 3.9 64 36-100 28-193 (328)
82 TIGR03309 matur_yqeB selenium- 96.7 0.0044 9.4E-08 59.7 7.1 59 37-101 172-230 (256)
83 COG0509 GcvH Glycine cleavage 96.7 0.002 4.2E-08 55.7 4.2 67 14-81 16-83 (131)
84 PRK05889 putative acetyl-CoA c 96.7 0.0035 7.5E-08 48.6 5.0 35 67-101 3-37 (71)
85 PRK06748 hypothetical protein; 96.2 0.0076 1.6E-07 48.3 4.6 32 68-99 6-37 (83)
86 TIGR01843 type_I_hlyD type I s 95.7 0.034 7.4E-07 57.6 8.0 32 69-100 274-306 (423)
87 PRK08225 acetyl-CoA carboxylas 95.6 0.025 5.4E-07 43.6 5.1 34 68-101 3-36 (70)
88 TIGR00999 8a0102 Membrane Fusi 95.6 0.024 5.3E-07 54.9 6.0 32 69-100 91-122 (265)
89 cd06850 biotinyl_domain The bi 95.5 0.022 4.9E-07 42.7 4.3 32 69-100 2-33 (67)
90 COG1566 EmrA Multidrug resista 95.3 0.041 8.9E-07 55.9 6.8 33 69-101 211-243 (352)
91 cd06253 M14_ASTE_ASPA_like_3 A 95.3 0.059 1.3E-06 53.8 7.8 58 38-97 237-297 (298)
92 PF13375 RnfC_N: RnfC Barrel s 95.2 0.032 7E-07 46.5 4.7 44 37-81 38-81 (101)
93 cd06251 M14_ASTE_ASPA_like_1 A 95.0 0.081 1.7E-06 52.5 7.8 59 36-97 226-286 (287)
94 COG0511 AccB Biotin carboxyl c 95.0 0.035 7.6E-07 49.1 4.6 35 66-100 70-104 (140)
95 cd06252 M14_ASTE_ASPA_like_2 A 94.7 0.12 2.5E-06 52.1 8.1 59 38-98 252-314 (316)
96 cd06250 M14_PaAOTO_like An unc 94.4 0.12 2.5E-06 53.0 7.5 59 37-97 296-358 (359)
97 PRK06549 acetyl-CoA carboxylas 94.4 0.072 1.6E-06 46.5 5.0 37 65-101 60-96 (130)
98 PF00364 Biotin_lipoyl: Biotin 94.3 0.07 1.5E-06 41.7 4.3 34 68-101 2-41 (74)
99 TIGR01235 pyruv_carbox pyruvat 94.2 0.15 3.2E-06 59.7 8.5 81 20-101 1019-1109(1143)
100 PF13437 HlyD_3: HlyD family s 94.2 0.074 1.6E-06 44.0 4.5 32 69-100 2-33 (105)
101 TIGR02994 ectoine_eutE ectoine 94.1 0.16 3.5E-06 51.3 7.6 58 38-97 263-324 (325)
102 COG3608 Predicted deacylase [G 93.8 0.13 2.7E-06 51.7 6.1 60 37-98 263-325 (331)
103 PRK05641 putative acetyl-CoA c 93.8 0.11 2.3E-06 46.7 5.0 36 66-101 84-119 (153)
104 PF09891 DUF2118: Uncharacteri 93.3 0.12 2.6E-06 46.0 4.4 47 36-82 87-134 (150)
105 PF05896 NQRA: Na(+)-transloca 93.2 0.16 3.4E-06 49.3 5.5 49 37-86 37-85 (257)
106 cd06254 M14_ASTE_ASPA_like_4 A 93.2 0.19 4.1E-06 49.8 6.3 55 38-94 231-287 (288)
107 TIGR02971 heterocyst_DevB ABC 92.9 0.16 3.4E-06 51.1 5.3 43 58-100 5-50 (327)
108 PF00529 HlyD: HlyD family sec 92.9 0.092 2E-06 51.7 3.5 34 67-100 2-35 (305)
109 PRK07051 hypothetical protein; 92.8 0.17 3.6E-06 40.2 4.3 35 66-100 3-44 (80)
110 PRK10476 multidrug resistance 92.6 0.19 4.2E-06 50.9 5.6 41 58-100 42-82 (346)
111 TIGR00998 8a0101 efflux pump m 92.3 0.16 3.4E-06 51.1 4.3 35 66-100 42-76 (334)
112 PRK11556 multidrug efflux syst 91.8 0.33 7.1E-06 50.7 6.1 61 39-100 61-121 (415)
113 TIGR01936 nqrA NADH:ubiquinone 91.5 0.27 5.9E-06 51.7 5.2 45 37-82 37-81 (447)
114 PF12700 HlyD_2: HlyD family s 91.4 0.22 4.8E-06 49.5 4.3 41 57-100 14-54 (328)
115 PRK14042 pyruvate carboxylase 91.3 0.67 1.4E-05 50.6 8.1 35 67-101 526-560 (596)
116 PRK11578 macrolide transporter 91.2 0.42 9E-06 49.0 6.2 59 40-99 36-94 (370)
117 PRK09859 multidrug efflux syst 91.2 0.44 9.6E-06 49.1 6.3 56 44-100 40-95 (385)
118 PF00529 HlyD: HlyD family sec 91.1 0.16 3.5E-06 50.0 2.9 29 36-64 8-36 (305)
119 TIGR01000 bacteriocin_acc bact 91.0 0.4 8.6E-06 50.7 5.9 42 60-101 53-94 (457)
120 TIGR01730 RND_mfp RND family e 90.9 0.37 8E-06 47.8 5.3 35 66-100 26-60 (322)
121 TIGR01843 type_I_hlyD type I s 90.8 0.39 8.5E-06 49.6 5.6 44 58-101 35-78 (423)
122 PF07247 AATase: Alcohol acety 90.8 4.7 0.0001 42.6 13.8 68 358-436 403-480 (480)
123 COG1726 NqrA Na+-transporting 90.6 0.51 1.1E-05 47.4 5.8 56 41-99 41-96 (447)
124 TIGR03794 NHPM_micro_HlyD NHPM 90.4 0.42 9.1E-06 49.9 5.4 38 63-100 55-92 (421)
125 PRK09578 periplasmic multidrug 90.4 0.59 1.3E-05 48.2 6.4 57 43-100 41-97 (385)
126 PRK10559 p-hydroxybenzoic acid 90.2 0.31 6.8E-06 48.8 4.1 34 67-100 48-81 (310)
127 TIGR02946 acyl_WS_DGAT acyltra 89.9 6.9 0.00015 40.9 14.1 165 242-438 231-441 (446)
128 PRK15136 multidrug efflux syst 89.9 0.42 9E-06 49.5 4.8 35 66-100 61-95 (390)
129 PRK03598 putative efflux pump 89.7 0.42 9.2E-06 48.1 4.6 35 66-100 43-77 (331)
130 PRK05352 Na(+)-translocating N 89.5 0.52 1.1E-05 49.7 5.2 44 38-82 39-82 (448)
131 KOG3373 Glycine cleavage syste 89.5 0.53 1.1E-05 42.1 4.3 43 38-81 82-124 (172)
132 PF07831 PYNP_C: Pyrimidine nu 88.3 0.45 9.7E-06 37.4 2.8 30 35-64 28-57 (75)
133 PRK09439 PTS system glucose-sp 88.3 1.2 2.5E-05 40.7 5.9 60 36-99 27-125 (169)
134 PF13437 HlyD_3: HlyD family s 88.2 0.91 2E-05 37.4 4.9 27 36-62 6-32 (105)
135 PLN02983 biotin carboxyl carri 87.9 0.66 1.4E-05 45.0 4.2 36 67-102 198-240 (274)
136 cd06255 M14_ASTE_ASPA_like_5 A 87.6 1.8 4E-05 43.0 7.4 42 39-80 240-283 (293)
137 PRK15030 multidrug efflux syst 87.5 0.74 1.6E-05 47.8 4.7 44 56-100 56-99 (397)
138 PRK09282 pyruvate carboxylase 87.5 1.6 3.4E-05 47.8 7.4 36 66-101 522-557 (592)
139 PF00358 PTS_EIIA_1: phosphoen 87.5 1.2 2.6E-05 38.9 5.3 60 36-99 9-107 (132)
140 TIGR00531 BCCP acetyl-CoA carb 87.4 0.57 1.2E-05 42.2 3.4 27 35-61 130-156 (156)
141 TIGR01945 rnfC electron transp 87.3 0.6 1.3E-05 49.1 4.0 43 38-81 40-82 (435)
142 PRK09783 copper/silver efflux 87.3 1.2 2.5E-05 46.5 6.1 46 55-100 111-158 (409)
143 cd00210 PTS_IIA_glc PTS_IIA, P 87.3 1.6 3.5E-05 37.7 5.9 19 81-99 85-103 (124)
144 PRK06302 acetyl-CoA carboxylas 87.0 0.69 1.5E-05 41.6 3.6 27 35-61 129-155 (155)
145 TIGR00830 PTBA PTS system, glu 86.5 1.8 3.8E-05 37.3 5.7 20 80-99 84-103 (121)
146 COG2190 NagE Phosphotransferas 86.0 1.6 3.4E-05 39.2 5.3 44 54-100 33-111 (156)
147 COG4072 Uncharacterized protei 85.3 2 4.2E-05 37.4 5.3 45 36-80 98-143 (161)
148 PRK05035 electron transport co 85.3 1.8 3.8E-05 48.3 6.4 43 38-81 46-88 (695)
149 PLN02226 2-oxoglutarate dehydr 85.2 0.96 2.1E-05 47.7 4.1 29 35-63 140-168 (463)
150 PF04952 AstE_AspA: Succinylgl 85.0 2.1 4.6E-05 42.2 6.3 58 39-98 229-290 (292)
151 TIGR01108 oadA oxaloacetate de 85.0 1.2 2.6E-05 48.7 4.8 37 66-102 517-553 (582)
152 TIGR00164 PS_decarb_rel phosph 84.8 2.2 4.8E-05 39.6 6.0 53 38-95 130-182 (189)
153 KOG0559 Dihydrolipoamide succi 84.8 4.2 9.1E-05 41.1 8.1 28 36-63 122-149 (457)
154 TIGR01000 bacteriocin_acc bact 84.4 0.91 2E-05 48.0 3.6 31 35-65 65-95 (457)
155 PRK14040 oxaloacetate decarbox 83.0 1.6 3.4E-05 47.7 4.8 36 66-101 524-559 (593)
156 PRK05305 phosphatidylserine de 82.8 2.9 6.2E-05 39.4 5.9 54 38-96 150-204 (206)
157 PF00668 Condensation: Condens 82.6 16 0.00035 34.8 11.4 32 409-440 129-160 (301)
158 COG0845 AcrA Membrane-fusion p 82.2 3.6 7.7E-05 40.8 6.7 46 53-99 54-99 (372)
159 TIGR03794 NHPM_micro_HlyD NHPM 82.1 1.8 3.8E-05 45.3 4.6 33 67-99 254-286 (421)
160 PRK12999 pyruvate carboxylase; 82.0 5.1 0.00011 47.3 8.7 35 67-101 1077-1111(1146)
161 PRK14875 acetoin dehydrogenase 82.0 2.4 5.2E-05 42.7 5.4 29 36-64 52-80 (371)
162 PF02749 QRPTase_N: Quinolinat 81.6 1.3 2.9E-05 35.7 2.8 22 40-61 46-67 (88)
163 PRK12784 hypothetical protein; 81.4 2.6 5.7E-05 33.0 4.1 35 68-102 7-41 (84)
164 COG4770 Acetyl/propionyl-CoA c 81.1 1.9 4.1E-05 46.1 4.3 33 68-100 577-609 (645)
165 COG1038 PycA Pyruvate carboxyl 81.0 8 0.00017 43.2 9.0 32 69-100 1082-1113(1149)
166 COG0508 AceF Pyruvate/2-oxoglu 81.0 1.6 3.4E-05 45.6 3.7 31 72-102 14-44 (404)
167 PF02666 PS_Dcarbxylase: Phosp 79.7 3.5 7.6E-05 38.6 5.3 59 36-96 143-202 (202)
168 cd06663 Biotinyl_lipoyl_domain 79.5 3.1 6.7E-05 31.8 4.1 29 73-101 12-40 (73)
169 COG4656 RnfC Predicted NADH:ub 79.4 1.6 3.5E-05 46.2 3.1 42 38-81 42-83 (529)
170 TIGR02712 urea_carbox urea car 79.0 2.4 5.2E-05 50.2 4.8 36 66-101 1132-1167(1201)
171 COG1566 EmrA Multidrug resista 78.3 3 6.5E-05 42.6 4.7 36 66-101 53-88 (352)
172 PTZ00144 dihydrolipoamide succ 77.9 2.5 5.5E-05 44.1 4.1 29 35-63 93-121 (418)
173 COG2190 NagE Phosphotransferas 77.6 4.8 0.0001 36.2 5.1 28 37-64 85-112 (156)
174 COG0845 AcrA Membrane-fusion p 76.8 2.3 4.9E-05 42.2 3.3 27 36-62 73-99 (372)
175 PRK05704 dihydrolipoamide succ 75.9 3.4 7.3E-05 43.1 4.4 30 35-64 51-80 (407)
176 TIGR01347 sucB 2-oxoglutarate 75.9 3.4 7.4E-05 43.0 4.4 30 34-63 48-77 (403)
177 cd06849 lipoyl_domain Lipoyl d 75.1 3.5 7.7E-05 30.2 3.3 25 36-60 50-74 (74)
178 cd00210 PTS_IIA_glc PTS_IIA, P 74.1 2.8 6.1E-05 36.2 2.7 27 37-63 78-104 (124)
179 TIGR00830 PTBA PTS system, glu 73.5 2.9 6.2E-05 36.0 2.6 27 37-63 78-104 (121)
180 PLN02528 2-oxoisovalerate dehy 73.1 4.5 9.7E-05 42.4 4.4 32 33-64 45-76 (416)
181 PRK03934 phosphatidylserine de 72.6 9.9 0.00021 37.3 6.5 55 39-97 211-265 (265)
182 PRK10255 PTS system N-acetyl g 71.5 8.8 0.00019 42.4 6.4 61 36-100 505-604 (648)
183 PRK09824 PTS system beta-gluco 71.1 8 0.00017 42.6 6.0 61 36-100 485-584 (627)
184 TIGR03309 matur_yqeB selenium- 70.8 5.7 0.00012 38.6 4.2 32 67-99 165-196 (256)
185 PRK09439 PTS system glucose-sp 70.7 7.2 0.00016 35.6 4.6 28 37-64 100-127 (169)
186 TIGR01995 PTS-II-ABC-beta PTS 70.2 9.9 0.00022 41.8 6.5 61 36-100 469-568 (610)
187 PF00358 PTS_EIIA_1: phosphoen 69.4 3.2 6.9E-05 36.3 2.0 28 37-64 82-109 (132)
188 TIGR01349 PDHac_trf_mito pyruv 67.3 7.1 0.00015 41.1 4.5 29 36-64 49-78 (435)
189 TIGR01995 PTS-II-ABC-beta PTS 67.3 6.1 0.00013 43.5 4.1 61 37-97 542-609 (610)
190 PRK14844 bifunctional DNA-dire 65.6 9.9 0.00022 47.9 5.7 21 41-61 2422-2442(2836)
191 KOG0368 Acetyl-CoA carboxylase 65.3 17 0.00037 43.3 7.1 79 22-100 634-719 (2196)
192 PRK03140 phosphatidylserine de 63.1 9.6 0.00021 37.2 4.2 57 38-97 202-258 (259)
193 KOG0369 Pyruvate carboxylase [ 62.5 6.4 0.00014 43.0 3.0 33 68-100 1108-1140(1176)
194 PRK09824 PTS system beta-gluco 61.4 9.1 0.0002 42.2 4.1 28 37-64 558-585 (627)
195 PRK11892 pyruvate dehydrogenas 59.9 11 0.00024 40.0 4.3 30 34-63 50-80 (464)
196 cd06255 M14_ASTE_ASPA_like_5 A 58.7 16 0.00034 36.3 4.9 36 66-102 231-266 (293)
197 PRK09294 acyltransferase PapA5 58.5 2.2E+02 0.0047 29.3 13.7 34 245-287 211-247 (416)
198 TIGR02645 ARCH_P_rylase putati 58.2 17 0.00037 38.8 5.2 43 58-100 405-471 (493)
199 COG3608 Predicted deacylase [G 57.9 18 0.00038 36.6 5.1 42 56-100 248-289 (331)
200 cd01134 V_A-ATPase_A V/A-type 57.8 42 0.00091 34.5 7.8 54 44-99 54-110 (369)
201 COG4072 Uncharacterized protei 57.4 21 0.00046 31.1 4.8 33 70-102 95-127 (161)
202 TIGR00163 PS_decarb phosphatid 56.5 12 0.00027 35.9 3.7 48 48-96 189-236 (238)
203 cd06253 M14_ASTE_ASPA_like_3 A 56.4 15 0.00032 36.7 4.3 34 66-100 229-262 (298)
204 cd06910 M14_ASTE_ASPA_like_7 A 56.0 15 0.00033 36.0 4.3 45 45-96 226-271 (272)
205 PF13375 RnfC_N: RnfC Barrel s 55.0 19 0.00042 29.9 4.1 52 47-98 11-62 (101)
206 cd06251 M14_ASTE_ASPA_like_1 A 54.9 25 0.00055 34.7 5.7 36 66-102 219-254 (287)
207 PF06898 YqfD: Putative stage 54.7 19 0.00042 37.2 5.0 53 37-96 167-226 (385)
208 cd06250 M14_PaAOTO_like An unc 54.7 20 0.00043 36.7 5.0 35 67-102 290-324 (359)
209 PRK02597 rpoC2 DNA-directed RN 54.6 33 0.00071 41.0 7.2 57 42-98 404-507 (1331)
210 PRK11856 branched-chain alpha- 54.6 17 0.00036 38.0 4.5 30 35-64 51-80 (411)
211 PF05896 NQRA: Na(+)-transloca 53.5 10 0.00022 36.9 2.5 31 67-97 30-60 (257)
212 cd06254 M14_ASTE_ASPA_like_4 A 52.9 18 0.0004 35.7 4.4 37 64-101 221-257 (288)
213 COG0157 NadC Nicotinate-nucleo 52.1 15 0.00032 36.2 3.3 22 237-259 184-205 (280)
214 PF02458 Transferase: Transfer 51.4 20 0.00043 37.1 4.5 31 409-439 147-177 (432)
215 TIGR02994 ectoine_eutE ectoine 51.3 20 0.00043 36.3 4.3 33 66-99 255-287 (325)
216 TIGR00999 8a0102 Membrane Fusi 51.2 14 0.00031 35.4 3.2 31 25-61 90-120 (265)
217 PLN02744 dihydrolipoyllysine-r 51.0 17 0.00036 39.4 3.9 30 72-101 124-153 (539)
218 PRK10255 PTS system N-acetyl g 50.9 17 0.00038 40.2 4.1 28 37-64 578-605 (648)
219 cd06252 M14_ASTE_ASPA_like_2 A 50.5 30 0.00065 34.7 5.5 36 65-101 243-278 (316)
220 PLN02663 hydroxycinnamoyl-CoA: 50.3 18 0.00039 37.7 4.0 30 409-438 145-174 (431)
221 PF07247 AATase: Alcohol acety 49.7 17 0.00037 38.4 3.8 33 408-440 140-172 (480)
222 KOG0238 3-Methylcrotonyl-CoA c 49.7 13 0.00029 39.4 2.8 32 69-100 604-635 (670)
223 PF09891 DUF2118: Uncharacteri 48.2 20 0.00043 32.1 3.3 44 48-102 73-116 (150)
224 PF07831 PYNP_C: Pyrimidine nu 48.1 25 0.00055 27.5 3.6 29 72-102 30-58 (75)
225 PF01551 Peptidase_M23: Peptid 48.1 58 0.0013 26.0 5.9 57 35-100 19-75 (96)
226 PRK04350 thymidine phosphoryla 47.4 32 0.0007 36.7 5.3 41 60-100 399-463 (490)
227 PLN00140 alcohol acetyltransfe 47.4 21 0.00045 37.6 3.9 30 409-438 148-177 (444)
228 PRK00044 psd phosphatidylserin 47.2 23 0.00049 35.2 3.9 49 48-98 237-286 (288)
229 PLN02481 Omega-hydroxypalmitat 47.1 23 0.00049 37.2 4.1 30 409-438 158-187 (436)
230 PRK08072 nicotinate-nucleotide 47.0 20 0.00043 35.4 3.5 21 41-61 66-86 (277)
231 TIGR03327 AMP_phos AMP phospho 46.4 33 0.00072 36.7 5.2 41 60-100 408-472 (500)
232 cd01572 QPRTase Quinolinate ph 46.3 22 0.00048 34.9 3.7 21 79-99 61-81 (268)
233 TIGR02644 Y_phosphoryl pyrimid 45.9 36 0.00078 35.5 5.3 41 60-100 327-398 (405)
234 KOG0557 Dihydrolipoamide acety 45.6 16 0.00035 38.2 2.7 30 73-102 51-80 (470)
235 COG4908 Uncharacterized protei 45.5 3.1E+02 0.0068 28.7 11.7 67 269-344 238-317 (439)
236 PF01551 Peptidase_M23: Peptid 45.3 20 0.00043 28.8 2.7 27 37-63 49-75 (96)
237 TIGR02643 T_phosphoryl thymidi 44.9 36 0.00078 35.8 5.1 39 62-100 335-404 (437)
238 TIGR02876 spore_yqfD sporulati 44.6 43 0.00093 34.7 5.6 54 37-96 163-223 (382)
239 TIGR02643 T_phosphoryl thymidi 44.1 19 0.00042 37.8 3.0 29 33-61 374-402 (437)
240 PRK05820 deoA thymidine phosph 43.4 40 0.00088 35.5 5.2 39 62-100 336-405 (440)
241 PRK06543 nicotinate-nucleotide 43.3 25 0.00055 34.8 3.5 22 40-61 66-87 (281)
242 PRK06096 molybdenum transport 42.6 26 0.00056 34.8 3.5 21 41-61 63-83 (284)
243 TIGR02645 ARCH_P_rylase putati 42.5 23 0.00049 37.9 3.2 32 31-62 439-470 (493)
244 PTZ00403 phosphatidylserine de 42.4 33 0.00071 35.1 4.3 60 37-99 280-340 (353)
245 PRK05742 nicotinate-nucleotide 41.8 27 0.00059 34.5 3.5 21 41-61 68-88 (277)
246 PRK04350 thymidine phosphoryla 41.6 24 0.00052 37.6 3.3 32 31-62 431-462 (490)
247 PRK09016 quinolinate phosphori 41.6 27 0.00059 34.8 3.5 21 41-61 87-107 (296)
248 PLN03157 spermidine hydroxycin 41.4 30 0.00066 36.3 4.1 30 409-438 146-175 (447)
249 cd01573 modD_like ModD; Quinol 41.3 28 0.0006 34.3 3.5 21 41-61 58-78 (272)
250 PRK06078 pyrimidine-nucleoside 41.2 41 0.0009 35.4 4.9 40 60-99 329-399 (434)
251 COG1155 NtpA Archaeal/vacuolar 40.9 80 0.0017 34.0 6.8 57 45-102 122-180 (588)
252 TIGR03327 AMP_phos AMP phospho 40.9 25 0.00053 37.6 3.2 32 31-62 440-471 (500)
253 PRK14698 V-type ATP synthase s 40.7 75 0.0016 37.2 7.3 69 26-102 107-182 (1017)
254 PRK07428 nicotinate-nucleotide 40.6 29 0.00063 34.5 3.5 22 40-61 73-94 (288)
255 PRK05848 nicotinate-nucleotide 40.5 29 0.00063 34.2 3.5 21 41-61 60-80 (273)
256 PRK05820 deoA thymidine phosph 40.4 23 0.00051 37.3 2.9 30 33-62 375-404 (440)
257 PRK07896 nicotinate-nucleotide 40.2 30 0.00064 34.4 3.5 21 41-61 78-98 (289)
258 PLN02716 nicotinate-nucleotide 39.8 30 0.00065 34.7 3.5 21 41-61 80-100 (308)
259 PRK06978 nicotinate-nucleotide 39.6 31 0.00067 34.4 3.5 21 41-61 84-104 (294)
260 cd01568 QPRTase_NadC Quinolina 39.5 30 0.00065 33.9 3.4 24 38-61 56-79 (269)
261 PRK10252 entF enterobactin syn 38.9 2E+02 0.0043 34.4 10.8 29 409-437 133-161 (1296)
262 PRK06106 nicotinate-nucleotide 38.3 33 0.00072 34.0 3.5 22 40-61 71-92 (281)
263 PF03869 Arc: Arc-like DNA bin 38.1 94 0.002 22.2 4.9 47 237-291 3-49 (50)
264 PRK06078 pyrimidine-nucleoside 38.1 27 0.00059 36.7 3.0 30 35-64 372-401 (434)
265 PRK04192 V-type ATP synthase s 37.6 79 0.0017 34.6 6.4 57 44-102 123-182 (586)
266 TIGR02644 Y_phosphoryl pyrimid 37.2 29 0.00063 36.2 3.0 29 35-63 370-398 (405)
267 PF06898 YqfD: Putative stage 36.9 39 0.00084 35.0 3.9 25 36-60 196-227 (385)
268 PRK08385 nicotinate-nucleotide 36.5 37 0.0008 33.6 3.5 19 81-99 63-81 (278)
269 TIGR00078 nadC nicotinate-nucl 36.4 37 0.0008 33.3 3.5 20 42-61 57-76 (265)
270 TIGR01334 modD putative molybd 35.5 39 0.00085 33.4 3.5 21 41-61 62-82 (277)
271 TIGR01042 V-ATPase_V1_A V-type 35.3 83 0.0018 34.4 6.1 54 44-99 123-179 (591)
272 TIGR00164 PS_decarb_rel phosph 34.0 2.1E+02 0.0045 26.4 7.9 64 36-100 79-154 (189)
273 PF02749 QRPTase_N: Quinolinat 31.8 60 0.0013 25.9 3.5 25 75-99 44-68 (88)
274 PRK10871 nlpD lipoprotein NlpD 31.6 28 0.0006 35.1 1.8 18 44-61 273-290 (319)
275 PRK10871 nlpD lipoprotein NlpD 31.4 1.2E+02 0.0026 30.6 6.2 23 79-101 271-293 (319)
276 PRK11637 AmiB activator; Provi 30.3 85 0.0018 32.8 5.3 21 80-100 381-401 (428)
277 PF01333 Apocytochr_F_C: Apocy 30.1 39 0.00085 28.7 2.1 52 36-95 9-61 (118)
278 TIGR02876 spore_yqfD sporulati 29.5 66 0.0014 33.3 4.2 26 36-61 193-225 (382)
279 PRK12467 peptide synthase; Pro 29.2 1.2E+03 0.027 32.0 16.5 27 411-437 177-203 (3956)
280 COG3453 Uncharacterized protei 29.0 58 0.0012 28.1 2.9 35 140-176 48-82 (130)
281 TIGR01043 ATP_syn_A_arch ATP s 28.2 1.2E+02 0.0026 33.2 5.9 53 45-99 121-176 (578)
282 COG0213 DeoA Thymidine phospho 27.8 51 0.0011 34.3 2.9 20 80-99 381-400 (435)
283 smart00226 LMWPc Low molecular 27.4 48 0.0011 28.6 2.4 33 136-173 40-72 (140)
284 CHL00117 rpoC2 RNA polymerase 26.4 71 0.0015 38.5 4.1 36 42-77 405-448 (1364)
285 PF07687 M20_dimer: Peptidase 26.2 62 0.0014 26.1 2.8 29 411-439 79-107 (111)
286 cd06848 GCS_H Glycine cleavage 25.8 87 0.0019 25.4 3.5 31 72-102 26-57 (96)
287 COG1725 Predicted transcriptio 25.8 22 0.00049 30.7 -0.0 20 138-157 34-53 (125)
288 PRK06559 nicotinate-nucleotide 25.2 73 0.0016 31.7 3.4 22 40-61 72-95 (290)
289 COG0213 DeoA Thymidine phospho 24.5 1.3E+02 0.0028 31.5 5.1 23 59-81 329-351 (435)
290 PRK08662 nicotinate phosphorib 24.1 73 0.0016 32.5 3.3 19 43-61 73-91 (343)
291 CHL00037 petA cytochrome f 23.2 2E+02 0.0043 28.6 5.8 52 36-95 210-263 (320)
292 PRK09603 bifunctional DNA-dire 22.4 1.1E+02 0.0023 39.5 4.7 19 43-61 2616-2634(2890)
293 PRK07188 nicotinate phosphorib 21.4 99 0.0022 31.7 3.6 21 41-61 73-93 (352)
294 TIGR01936 nqrA NADH:ubiquinone 20.5 70 0.0015 33.9 2.4 32 67-98 30-61 (447)
295 PRK11391 etp phosphotyrosine-p 20.4 92 0.002 27.3 2.8 32 137-172 44-75 (144)
296 cd00516 PRTase_typeII Phosphor 20.2 1E+02 0.0023 30.0 3.4 24 38-61 49-72 (281)
297 PRK13380 glycine cleavage syst 20.2 1.1E+02 0.0024 27.1 3.2 35 68-102 37-72 (144)
298 PRK09603 bifunctional DNA-dire 20.1 1.4E+02 0.003 38.7 4.9 20 80-99 2616-2635(2890)
299 PRK05305 phosphatidylserine de 20.0 2.8E+02 0.006 26.0 6.1 64 36-100 98-174 (206)
No 1
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=2.1e-90 Score=708.80 Aligned_cols=403 Identities=26% Similarity=0.479 Sum_probs=337.9
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 103 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~ 103 (447)
++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+..++.
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~ 82 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAA 82 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCC
Q 013218 104 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP 183 (447)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 183 (447)
..........++..+..... ++.+ ......+.+||+||+||+||||||++|+|||++|||+++||++|+.+....+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 160 (407)
T PRK05704 83 GAAAAAAAAAAAAAAAPAQA-QAAA-AAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA 160 (407)
T ss_pred cccCCCCCCCCCCCCCCCCC-CCCc-cCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence 11100000000000000000 0001 011123679999999999999999999999999999999999997431100000
Q ss_pred CCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhccc
Q 013218 184 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNN 262 (447)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~ 262 (447)
+.+. .. ...+.. . .....+.+|++++||.|+++|++| +++||||+..++|+|.|+++|+++++.
T Consensus 161 ~~~~------~~-----~~~~~~--~--~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~ 225 (407)
T PRK05704 161 PAAA------AP-----AAAPAP--L--GARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDA 225 (407)
T ss_pred CCCC------CC-----cCCCcc--c--cCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhh
Confidence 0000 00 000000 0 011235689999999999999999 489999999999999999999999865
Q ss_pred CC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHH
Q 013218 263 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR 341 (447)
Q Consensus 263 ~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~ 341 (447)
+. ..|.++|+++||+||+++||++||.||++|+++ ++++++++|||+||++++||++|||++++++|+.+|++++++
T Consensus 226 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~ 303 (407)
T PRK05704 226 FEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAE 303 (407)
T ss_pred hHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCC--eEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHH
Confidence 43 347899999999999999999999999999865 789999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccC
Q 013218 342 LQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD 421 (447)
Q Consensus 342 l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvD 421 (447)
|++++|+|+|+++|++||||||||+|++|+.+|+|||||||+|||++|++.++|++. ||++++|++|+|||+||||++|
T Consensus 304 l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~lsls~DHRviD 382 (407)
T PRK05704 304 LAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYLALSYDHRIID 382 (407)
T ss_pred HHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEEEEEechhhhC
Confidence 999999999999999999999999999999999999999999999999999999985 7899999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218 422 GATVAKFCNEWKQLIENPELLLLQM 446 (447)
Q Consensus 422 G~~aa~Fl~~l~~~Le~P~~ll~~~ 446 (447)
|+++|+||++|+++||||+.||++|
T Consensus 383 Ga~aa~Fl~~l~~~le~p~~ll~~~ 407 (407)
T PRK05704 383 GKEAVGFLVTIKELLEDPERLLLDL 407 (407)
T ss_pred cHHHHHHHHHHHHHhhCHHHHhhcC
Confidence 9999999999999999999999875
No 2
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=2.8e-90 Score=706.28 Aligned_cols=401 Identities=26% Similarity=0.487 Sum_probs=337.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 103 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~ 103 (447)
++|+||+||++|++|+|++|+|++||.|++||+|++|||||+.++++||++|+|.++++++|+.|++|++|++|+..++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999854321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCC
Q 013218 104 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP 183 (447)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 183 (447)
.+...+...+++......... ..+. ...+++.+||+||+||+|+||||+.|+|||++|||+++||++|+......+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 158 (403)
T TIGR01347 81 TAAPPAKSGEEKEETPAASAA-AAPT-AAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAP 158 (403)
T ss_pred cccccccccCCCCCCCCCCCC-CCCc-CccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCC
Confidence 110000000000000000000 0010 11234679999999999999999999999999999999999997431100000
Q ss_pred CCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhccc
Q 013218 184 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNN 262 (447)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~ 262 (447)
. . + .+ .+.+.. .....+.+||+++||+|+++|++|+ ++||||+..++|+|+|+++|+++++.
T Consensus 159 ~--~----~-~~-----~~~~~~-----~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~ 221 (403)
T TIGR01347 159 A--P----A-AA-----AKAPAN-----FTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEE 221 (403)
T ss_pred C--C----C-cc-----cCCccc-----cCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhh
Confidence 0 0 0 00 000000 0112356899999999999999995 89999999999999999999999865
Q ss_pred CC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHH
Q 013218 263 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR 341 (447)
Q Consensus 263 ~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~ 341 (447)
+. ..|.++|+++||+||+++||++||+||++|+++ ++++++++|||+||++++||++|||++++++|+.+|++++++
T Consensus 222 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~ 299 (403)
T TIGR01347 222 FEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGD--DIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIAD 299 (403)
T ss_pred hHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCC--EEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHH
Confidence 43 347899999999999999999999999999864 799999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccC
Q 013218 342 LQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD 421 (447)
Q Consensus 342 l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvD 421 (447)
|++++|+|+|+++|++||||||||+|++|+.+|+|||||||+|||++|++.++|++. ||++++|++|+|||+||||++|
T Consensus 300 l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsLt~DHRviD 378 (403)
T TIGR01347 300 LGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLALSYDHRLID 378 (403)
T ss_pred HHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEE-CCeEEEEEEEEEEEEecchhhC
Confidence 999999999999999999999999999999999999999999999999999999995 6899999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218 422 GATVAKFCNEWKQLIENPELLLLQM 446 (447)
Q Consensus 422 G~~aa~Fl~~l~~~Le~P~~ll~~~ 446 (447)
|+++|+||++|+++||+|..||++|
T Consensus 379 Ga~aa~Fl~~l~~~le~p~~ll~~~ 403 (403)
T TIGR01347 379 GKEAVTFLVTIKELLEDPRRLLLDL 403 (403)
T ss_pred hHHHHHHHHHHHHHhcCHHHHHhcC
Confidence 9999999999999999999999886
No 3
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.9e-89 Score=704.09 Aligned_cols=416 Identities=70% Similarity=1.057 Sum_probs=341.0
Q ss_pred EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCCCC
Q 013218 26 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP 105 (447)
Q Consensus 26 ~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~~~ 105 (447)
++||+||++|.||+|++|+|++||.|++||+|+++||||+.++++|+.+|+|.++++++|+.+++|++|+.|+.+++...
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999975432211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCCCC
Q 013218 106 TPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPST 185 (447)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~ 185 (447)
.....++++........+++... ....+.+++||++|+||++|||||+.|+|||++|||+++||++|++.......+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~ 159 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDER-GSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSS 159 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCcc-ccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhcccccccccc
Confidence 10000000000000000000000 11112367999999999999999999999999999999999999853221111110
Q ss_pred ccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhcCcceEEEEeeeechHHHHHHHHhcccCCC
Q 013218 186 ASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSD 265 (447)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~ 265 (447)
++.+..+... ..+.+. ..........+.+||+++||.|+++|++|+++||||+..++|+|+|+++|+++++....
T Consensus 160 ~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~r~~~~~~~~~ 234 (416)
T PLN02528 160 AEEATIAEQE----EFSTSV-STPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTD 234 (416)
T ss_pred cccccCCccc----cccccC-CCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHHHHHHhhhhhh
Confidence 0000000000 000000 00000111245689999999999999999999999999999999999999999865445
Q ss_pred CCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHH
Q 013218 266 PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQL 345 (447)
Q Consensus 266 ~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ 345 (447)
.|.++||++||+||+++||++||.||++|++++..+++|+++||||||++++||++|||++++++++.+|++++++|+++
T Consensus 235 ~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ 314 (416)
T PLN02528 235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHL 314 (416)
T ss_pred cCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999876557999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHH
Q 013218 346 AKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATV 425 (447)
Q Consensus 346 ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~a 425 (447)
+|+|+|+++|++||||||||+|++|+.+|+|||||||+|||++|++.++|++.+||++++|++|+|||+||||+|||+++
T Consensus 315 ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~a 394 (416)
T PLN02528 315 AAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATV 394 (416)
T ss_pred HHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHH
Confidence 99999999999999999999999999999999999999999999999999997678999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHhhhcCC
Q 013218 426 AKFCNEWKQLIENPELLLLQMR 447 (447)
Q Consensus 426 a~Fl~~l~~~Le~P~~ll~~~~ 447 (447)
++||++|+++||||+.||+++|
T Consensus 395 a~Fl~~lk~~le~P~~lll~~~ 416 (416)
T PLN02528 395 ARFCNEWKSYVEKPELLMLHMR 416 (416)
T ss_pred HHHHHHHHHHHhCHHHHHhccC
Confidence 9999999999999999999986
No 4
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=1.3e-88 Score=708.76 Aligned_cols=415 Identities=28% Similarity=0.444 Sum_probs=343.7
Q ss_pred cccccccccccccCCCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC
Q 013218 4 MVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83 (447)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~ 83 (447)
|+.+|.|++++.+ +. -++++||+||++|++|+|++|++++||.|++||+||+|||||++++++|+.+|+|.+|+++
T Consensus 97 ~~~~~~~~~~~~~--~~--~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~ 172 (539)
T PLN02744 97 MQSARGFSSSSDL--PP--HQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 172 (539)
T ss_pred ccccccccccccC--CC--CceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEec
Confidence 5667888866655 44 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-eeecccEEEEEecCCCCCC-----CC----CCC--CC--CCCCCCCC---CCCC-CC----CCCc-C-cCCCccCC
Q 013218 84 PGN-IVKVGETLLKLVVGDSAVP-----TP----SSD--VL--ESVKPPGS---ENSP-DS----KLNK-D-TVGGVLAT 139 (447)
Q Consensus 84 ~g~-~v~~G~~l~~i~~~~~~~~-----~~----~~~--~~--~~~~~~~~---~~~~-~~----~~~~-~-~~~~~~as 139 (447)
+|+ .|++|++|+++..++++.+ .+ .+. .+ .++.+... ..++ +. .+.. . ...++++|
T Consensus 173 eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~AS 252 (539)
T PLN02744 173 DGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFAS 252 (539)
T ss_pred CCCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCC
Confidence 996 7999999998854322210 00 000 00 00000000 0000 00 0000 0 11246799
Q ss_pred HHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCcee
Q 013218 140 PTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTV 219 (447)
Q Consensus 140 P~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (447)
|+||+||+||||||+.|+||||+|||+++||++|+..... .++ ++. . . +.. . .....+++
T Consensus 253 P~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~--~~~-~~~-~---~-------~~~----~--~~~~~~~v 312 (539)
T PLN02744 253 PLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGK--GAT-APP-S---T-------DSK----A--PALDYTDI 312 (539)
T ss_pred chhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhcccc--ccC-CCC-C---c-------ccC----C--CCCccccc
Confidence 9999999999999999999999999999999999843111 000 000 0 0 000 0 00013568
Q ss_pred cCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccC
Q 013218 220 PLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 297 (447)
Q Consensus 220 ~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~ 297 (447)
|++++||.|+++|++| +++||||++.++|+|+|+++|++++.... ..|.++|+++||+||+++||++||+||++|+++
T Consensus 313 pls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~ 392 (539)
T PLN02744 313 PNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDD 392 (539)
T ss_pred cchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccC
Confidence 9999999999999999 58999999999999999999999986543 347899999999999999999999999999865
Q ss_pred CcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecC-CCCCccccc
Q 013218 298 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIG-AIGGKFGAP 376 (447)
Q Consensus 298 ~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg-~~G~~~~~p 376 (447)
.+++++++||||||++++||++|||++++++++.+|++++++|+++||+|+|+++|++||||||||+| +||+.+|+|
T Consensus 393 --~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftp 470 (539)
T PLN02744 393 --YIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCA 470 (539)
T ss_pred --cEEEeCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred ccCCCceeEEEecceEEeeEEc-CCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 377 LLNLPEVAIIAMGRIEKVPRLS-DDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 377 ii~~pq~ail~vG~i~~~p~~~-~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
||||||+|||++|++.++|++. .||++++|++|+|||+||||+|||+++++||++|+++||||+.||+
T Consensus 471 IInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 471 IINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred cccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 9999999999999999999984 5789999999999999999999999999999999999999998875
No 5
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=3.2e-87 Score=714.48 Aligned_cols=414 Identities=27% Similarity=0.433 Sum_probs=334.2
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
.++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|+.|+..++
T Consensus 135 ~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 214 (590)
T TIGR02927 135 ATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAGA 214 (590)
T ss_pred ceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred CCCC-----CCCCC------CCCCCCCC------CC------CCCCC----CCCc-C-cCCCccCCHHHHHHHHHhCCCC
Q 013218 103 AVPT-----PSSDV------LESVKPPG------SE------NSPDS----KLNK-D-TVGGVLATPTVRNLAKLYGINL 153 (447)
Q Consensus 103 ~~~~-----~~~~~------~~~~~~~~------~~------~~~~~----~~~~-~-~~~~~~asP~aR~lA~e~gidl 153 (447)
..+. ....+ .+.+.... .. .+... .+.. . ...++++||+||+||+||||||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl 294 (590)
T TIGR02927 215 AAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDL 294 (590)
T ss_pred ccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCH
Confidence 2110 00000 00000000 00 00000 0000 0 1124789999999999999999
Q ss_pred CCccCCCCCCceehHHHHHHHHhcCCC-CCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHH
Q 013218 154 YDVDATGKDGRVLKEDVLKYAVQKGAA-DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTM 232 (447)
Q Consensus 154 ~~v~gtG~~GrI~~~DV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m 232 (447)
+.|+|||++|||+++||++|+...... ..+..+........ ...+.+...+ .......+.+||+++||.|+++|
T Consensus 295 ~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~pls~~rk~ia~~m 369 (590)
T TIGR02927 295 NSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAA----AAAASASPAP-AKAHLRGTTQKANRIREITAKKT 369 (590)
T ss_pred HHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccc----cccccCCCcc-ccccccCceeeccHHHHHHHHHH
Confidence 999999999999999999998532111 11110000000000 0000000000 00011245689999999999999
Q ss_pred HHhc-CcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEE
Q 013218 233 SMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIG 310 (447)
Q Consensus 233 ~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~ig 310 (447)
++|+ ++||||++.++|||+|+++|+++|+.+. ..|.++|+++||+||+++||++||.||++|++++++|++|+++|||
T Consensus 370 ~~S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnig 449 (590)
T TIGR02927 370 REALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLG 449 (590)
T ss_pred HHHhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEE
Confidence 9995 7899999999999999999999986543 3478999999999999999999999999998766689999999999
Q ss_pred eEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecc
Q 013218 311 IAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGR 390 (447)
Q Consensus 311 iav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~ 390 (447)
|||++++||++|||+++++++|.+|++++++|+++||+|+|+++||+||||||||||++|+++|+||||+||+|||++|+
T Consensus 450 vAv~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~ 529 (590)
T TIGR02927 450 FAVDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGA 529 (590)
T ss_pred EEEECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeEEc--CCC--ceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHH
Q 013218 391 IEKVPRLS--DDG--NVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPEL 441 (447)
Q Consensus 391 i~~~p~~~--~dG--~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ 441 (447)
+.++|++. ++| .+++|++|+|||+||||+|||+++++||++|+++||||..
T Consensus 530 i~~~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~ 584 (590)
T TIGR02927 530 IVKRPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF 584 (590)
T ss_pred ceEEEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence 99999985 344 3899999999999999999999999999999999999873
No 6
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=6e-86 Score=699.68 Aligned_cols=413 Identities=27% Similarity=0.427 Sum_probs=337.5
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
.++|+||++|+ |++|+|++|+|++||.|++||+|++|||||+.++|+||++|+|.++++++|+.|++|++|+.|...++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred CCCCC-CCCCC----CCCCCC----CCCCC--CCCCCC---c-C-cCCCc-cCCHHHHHHHHHhCCCCCCccCCCCCCce
Q 013218 103 AVPTP-SSDVL----ESVKPP----GSENS--PDSKLN---K-D-TVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRV 165 (447)
Q Consensus 103 ~~~~~-~~~~~----~~~~~~----~~~~~--~~~~~~---~-~-~~~~~-~asP~aR~lA~e~gidl~~v~gtG~~GrI 165 (447)
..... ...++ +.+... ...+. .+..+. . . ...++ ++||+||+||+||||||+.|.|||++|||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence 21100 00000 000000 00000 000000 0 0 11234 69999999999999999999999999999
Q ss_pred ehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEE
Q 013218 166 LKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYV 244 (447)
Q Consensus 166 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~ 244 (447)
+++||++|+.+... .+++. +.+.... ....+..+... ......++.+||+++||.|+++|++| +++||||++
T Consensus 275 ~~~DV~~~~~~~~~-~~~~~-~~~~~~~----~~~~~~~~~~~-~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~ 347 (546)
T TIGR01348 275 LREDVQRFVKEPSV-RAQAA-AASAAGG----APGALPWPNVD-FSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHF 347 (546)
T ss_pred eHHHHHHHhhcccc-ccCcc-cccccCC----ccccCCCcccc-ccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEE
Confidence 99999999853211 01100 0000000 00000000000 00011246689999999999999999 589999999
Q ss_pred eeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeee
Q 013218 245 EEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNI 324 (447)
Q Consensus 245 ~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI 324 (447)
.++|||+|+++|+++++.+...|.++||++||+||+++||++||.||++|++++.++++++++||||||++++||++|||
T Consensus 348 ~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi 427 (546)
T TIGR01348 348 DKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVI 427 (546)
T ss_pred EEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCc
Confidence 99999999999999987655567899999999999999999999999999876557999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCcee
Q 013218 325 KNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY 404 (447)
Q Consensus 325 ~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~ 404 (447)
++++++|+.+|++++++|++++|+|+|+++|++||||||||+|++|+.+|+||||+||+|||++|++.++|+++ +|+++
T Consensus 428 ~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~~~ 506 (546)
T TIGR01348 428 KDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKEFE 506 (546)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985 67899
Q ss_pred eEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 405 PSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 405 ~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
+|++|+|||+||||++||+++++||++|+++||||..||+
T Consensus 507 ~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 507 PRLMLPLSLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred EEEEEEEeEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999999999999999998875
No 7
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=1.1e-85 Score=679.70 Aligned_cols=403 Identities=28% Similarity=0.446 Sum_probs=331.8
Q ss_pred EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCe-eecccEEEEEecCCCCC
Q 013218 26 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLVVGDSAV 104 (447)
Q Consensus 26 ~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~-v~~G~~l~~i~~~~~~~ 104 (447)
++||++|++|.+|+|.+|++++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|++|+..++..
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~ 81 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV 81 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999 99999999997543221
Q ss_pred C-C--------C--CCCC-CCCCC-C---CCCCCCC--CC-CCC---c---C-cCCCccCCHHHHHHHHHhCCCCCCccC
Q 013218 105 P-T--------P--SSDV-LESVK-P---PGSENSP--DS-KLN---K---D-TVGGVLATPTVRNLAKLYGINLYDVDA 158 (447)
Q Consensus 105 ~-~--------~--~~~~-~~~~~-~---~~~~~~~--~~-~~~---~---~-~~~~~~asP~aR~lA~e~gidl~~v~g 158 (447)
+ . . .+.. +..+. . +....++ .. .+. . . ...++++||+||+||+||||||+.|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g 161 (435)
T TIGR01349 82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG 161 (435)
T ss_pred ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence 1 0 0 0000 00000 0 0000000 00 000 0 0 112467999999999999999999999
Q ss_pred CCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cC
Q 013218 159 TGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AK 237 (447)
Q Consensus 159 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~ 237 (447)
||++|||+++||++|+..... .++.. . +. .. + ..... ..+......+.+||+++||.|+++|++| ++
T Consensus 162 tG~~GrI~~~DV~~~~~~~~~-~~~~~-~-~~--~~--~--~~~~~---~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ 229 (435)
T TIGR01349 162 SGPNGRIVKKDIESFVPQSPA-SANFQ-A-AA--TT--P--ATKKA---AAPVSTGSYEDVPLSNIRKIIAKRLLESKQT 229 (435)
T ss_pred CCCCCceeHHHHHHHHhcccc-cCCCc-c-cc--cc--c--ccccc---CCCccCCcceeecccHHHHHHHHHHHHHHhh
Confidence 999999999999999853111 11100 0 00 00 0 00000 0000111245689999999999999998 58
Q ss_pred cceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCC
Q 013218 238 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH 317 (447)
Q Consensus 238 iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~ 317 (447)
+||||++.++|+|+|+++|+++++.... |.++||++||+||+++||++||.||++|+++ ++++|+++||||||++++
T Consensus 230 ip~~~~~~evd~t~l~~~r~~~~~~~~~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~--~i~~~~~vnigvAv~~~~ 306 (435)
T TIGR01349 230 IPHYYVSIECNVDKLLALRKELNAMASE-VYKLSVNDFIIKASALALREVPEANSSWTDN--FIRRYKNVDISVAVATPD 306 (435)
T ss_pred CCeEEEEEEEEhHHHHHHHHHHHhhhhc-CCcccHHHHHHHHHHHHHHhCcHhheEEeCC--eEEEeCCeeEEEEEECCC
Confidence 9999999999999999999999865433 7899999999999999999999999999864 799999999999999999
Q ss_pred CeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEE
Q 013218 318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRL 397 (447)
Q Consensus 318 Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~ 397 (447)
||++|||++++++|+.+|++++++|++++|+|+|+++|++||||||||+|++|+.+|+||||+||+|||++|++.++|++
T Consensus 307 GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~ 386 (435)
T TIGR01349 307 GLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVV 386 (435)
T ss_pred CeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCc---eeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 398 SDDGN---VYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 398 ~~dG~---i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
. +|+ +++|++|+|||+||||++||+++++||++|+++||+|+.||+
T Consensus 387 ~-~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 387 D-NDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred e-CCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 5 455 999999999999999999999999999999999999998875
No 8
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.6e-83 Score=657.37 Aligned_cols=402 Identities=32% Similarity=0.562 Sum_probs=342.7
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
.++|+||+||++|+||+|++|+|++||.|++||+|+||||||+++||+||++|+|.++++++|++|++|++|++|...++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCC
Q 013218 103 AVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADG 182 (447)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~ 182 (447)
..++..... +++.......++...+ ........+||++|+||+|+||||+.+.|||++|||+++|+++++... ..
T Consensus 82 ~~~a~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~---~~ 156 (404)
T COG0508 82 DAPAAAEAP-PEPAAAAPASAPATAA-SAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEK---AA 156 (404)
T ss_pred cccccCccc-CCccccCcCcccCccc-cccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccc---cc
Confidence 431111100 0000000000000000 001156789999999999999999999999999999999999998543 00
Q ss_pred CCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcc
Q 013218 183 PSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQN 261 (447)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~ 261 (447)
+..+.... .+ .........+++|++++||.|+.+|..| .++||++...++|++.|+++|++++.
T Consensus 157 ~~~~~~~~----------~~-----~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~ 221 (404)
T COG0508 157 AAAAPAPA----------AA-----APASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKE 221 (404)
T ss_pred cccccccc----------cC-----CcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhh
Confidence 10000000 00 0002334568899999999999999998 47999999999999999999999998
Q ss_pred cCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHH
Q 013218 262 NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR 341 (447)
Q Consensus 262 ~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~ 341 (447)
.+...|.++||++|++||++.||+++|.+|+++++++..+++++++|||+||++++||++|||++++++++.+|++++.+
T Consensus 222 ~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~ 301 (404)
T COG0508 222 EFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKD 301 (404)
T ss_pred hhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHH
Confidence 76655899999999999999999999999988876422799999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccC
Q 013218 342 LQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD 421 (447)
Q Consensus 342 l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvD 421 (447)
|..++|+|+|.++|++||||||||+|++|...|+|+||+||++||++|++.++|+|. +|++++|++|+|+|+||||++|
T Consensus 302 la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsls~DHRviD 380 (404)
T COG0508 302 LAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLSYDHRVID 380 (404)
T ss_pred HHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEe-cCceeeEeeEeecccccccccc
Confidence 999999999999999999999999999999999999999999999999999999995 5599999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCHHHhhhc
Q 013218 422 GATVAKFCNEWKQLIENPELLLLQ 445 (447)
Q Consensus 422 G~~aa~Fl~~l~~~Le~P~~ll~~ 445 (447)
|+++++||..++++||||..||++
T Consensus 381 Ga~aa~Fl~~ik~~le~p~~ll~~ 404 (404)
T COG0508 381 GAEAARFLVALKELLEDPERLLLE 404 (404)
T ss_pred cHHHHHHHHHHHHHhcChhhhhcC
Confidence 999999999999999999999875
No 9
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=2.5e-82 Score=683.66 Aligned_cols=414 Identities=29% Similarity=0.466 Sum_probs=335.0
Q ss_pred ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 22 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..++|+||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|..++
T Consensus 205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 46799999999 8999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred CCCC-CCCCC-C-CCCCC---CCCCCCCCCCCC-C----cCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHH
Q 013218 102 SAVP-TPSSD-V-LESVK---PPGSENSPDSKL-N----KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 170 (447)
Q Consensus 102 ~~~~-~~~~~-~-~~~~~---~~~~~~~~~~~~-~----~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV 170 (447)
+... ...+. . .+.+. ......+++... . .....++++||+||+||++|||||+.|+|||++|||+++||
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV 362 (633)
T PRK11854 283 AAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDV 362 (633)
T ss_pred CCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHH
Confidence 3211 11000 0 00000 000000000000 0 01112467999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeee
Q 013218 171 LKYAVQKGA-ADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN 248 (447)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vD 248 (447)
++|+..... .++.+.++.+..+.+.. .+.+. .........+++||+++||.|+++|.+|+ ++|||+++.++|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD 436 (633)
T PRK11854 363 QAYVKDAVKRAEAAPAAAAAGGGGPGL----LPWPK--VDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKAD 436 (633)
T ss_pred HHHhhccccccccCCcccccccccccc----ccccc--ccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEE
Confidence 999853211 00000000000000000 00000 00000112356899999999999999994 899999999999
Q ss_pred chHHHHHHHHhcccCC--CCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeec
Q 013218 249 CDALVKLKASFQNNNS--DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKN 326 (447)
Q Consensus 249 vt~l~~~~k~~~~~~~--~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~ 326 (447)
+|.|+++|+++++... ..|.++|+++||+||+++||++||+||++|+++++++++|+++||||||++++||++|||++
T Consensus 437 ~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~ 516 (633)
T PRK11854 437 ITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKD 516 (633)
T ss_pred cHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECC
Confidence 9999999998875322 34789999999999999999999999999986555899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeE
Q 013218 327 VQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPS 406 (447)
Q Consensus 327 a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r 406 (447)
++++++.+|+++++++++++|+|+|.++|+++|||||||+||+|+++|+|||||||+|||++|++.++|+++ +|.+++|
T Consensus 517 a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~-~~~~~~r 595 (633)
T PRK11854 517 VNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN-GKEFAPR 595 (633)
T ss_pred CccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 6789999
Q ss_pred cEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 407 PIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 407 ~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
++|+|||+||||++||+++++||++|+++||+|..|||
T Consensus 596 ~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 596 LMLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred EEEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999999999999998875
No 10
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.7e-81 Score=668.60 Aligned_cols=417 Identities=34% Similarity=0.565 Sum_probs=336.9
Q ss_pred ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 22 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.+.+|+||+||+ |++|+|++|++++||.|++||.|++|||||+.++|+||++|+|.++++++|+.|.+|++|+.+...+
T Consensus 118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~ 196 (547)
T PRK11855 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA 196 (547)
T ss_pred CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 357999999999 9999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred CCC-CC--CCCCCCC-C--C-CCCCCCCC--CCCC-CC-cCcCCCc-cCCHHHHHHHHHhCCCCCCccCCCCCCceehHH
Q 013218 102 SAV-PT--PSSDVLE-S--V-KPPGSENS--PDSK-LN-KDTVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRVLKED 169 (447)
Q Consensus 102 ~~~-~~--~~~~~~~-~--~-~~~~~~~~--~~~~-~~-~~~~~~~-~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 169 (447)
+.. .. ....++. . + ........ ++.. +. ....++. ++||+||+||++|||||+.|+|||++|||+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 276 (547)
T PRK11855 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKED 276 (547)
T ss_pred CccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHH
Confidence 211 00 0000000 0 0 00000000 0000 00 0112234 799999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeee
Q 013218 170 VLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN 248 (447)
Q Consensus 170 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vD 248 (447)
|++|+........++............+ + .+.+. ........++.+||+++||.|+++|++|+ ++||||++.++|
T Consensus 277 V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd 352 (547)
T PRK11855 277 VQAFVKGAMSAAAAAAAAAAAAGGGGLG-L-LPWPK--VDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEAD 352 (547)
T ss_pred HHHHhhcccccccccccccccccccccc-c-cCCcc--ccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEE
Confidence 9999853211101100000000000000 0 00000 00000112456899999999999999995 899999999999
Q ss_pred chHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccC
Q 013218 249 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQ 328 (447)
Q Consensus 249 vt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~ 328 (447)
+|.|+++|+++++.++..|.++||++||+||+++||++||+||++|+++++++++|+++|||+||++++||++|+|++++
T Consensus 353 ~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~ 432 (547)
T PRK11855 353 ITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVD 432 (547)
T ss_pred ChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCc
Confidence 99999999999865555688999999999999999999999999998655589999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcE
Q 013218 329 SLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPI 408 (447)
Q Consensus 329 ~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~ 408 (447)
++++.+|+++++++++++|+|+|.++|+++|||+|||+||+|+++|+|+|||||+|||++|++.++|++ .+|.+..|++
T Consensus 433 ~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~-~~~~~~~r~~ 511 (547)
T PRK11855 433 KKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVW-DGKEFVPRLM 511 (547)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeee-eCCEEEEEeE
Confidence 999999999999999999999999999999999999999999999999999999999999999999976 4778899999
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
|+|||+||||+|||+|+++||++|+++||+|+.||+
T Consensus 512 m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 512 LPLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred EEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999875
No 11
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=1.5e-81 Score=625.80 Aligned_cols=410 Identities=29% Similarity=0.446 Sum_probs=342.9
Q ss_pred CCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCC-CeeecccEEEEEe
Q 013218 20 ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG-NIVKVGETLLKLV 98 (447)
Q Consensus 20 ~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g-~~v~~G~~l~~i~ 98 (447)
.+...+|.||.|+.+|++|.|++|.++|||++.+||+||||||||+++++++.++|+|.+|+++|| ..|++|.+|++|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 456677999999999999999999999999999999999999999999999999999999999999 6799999999998
Q ss_pred cCCCCCCC-----CC------C-CCCCCCCCCC----CCCCCCCCC-----Cc-CcCCCccCCHHHHHHHHHhCCCCCCc
Q 013218 99 VGDSAVPT-----PS------S-DVLESVKPPG----SENSPDSKL-----NK-DTVGGVLATPTVRNLAKLYGINLYDV 156 (447)
Q Consensus 99 ~~~~~~~~-----~~------~-~~~~~~~~~~----~~~~~~~~~-----~~-~~~~~~~asP~aR~lA~e~gidl~~v 156 (447)
+.+++..+ .. + .++++++.+. +.+++++.+ .. ...+++++||.+|+||.++|+|++.|
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence 77654211 10 0 0011111110 001011111 01 11247899999999999999999999
Q ss_pred cCCCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-
Q 013218 157 DATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA- 235 (447)
Q Consensus 157 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s- 235 (447)
.||||+|||++.||++|+...+...+. +.. +..+. +++. +.......++++|++.||+.|++||.+|
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~-~~~--~~~~~-------~~~~--a~~~~~~~~~diP~s~mr~viakrl~eSk 262 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAK-APK--ASAPP-------PAPA--APPVSLPGYEDIPVSNMRRVIAKRLLESK 262 (470)
T ss_pred cCcCCCceeehhhHHHhhccccccccc-CCC--ccCCC-------cCcc--CCcCCCCcccccccchhhhhhhhhhhhhh
Confidence 999999999999999999653211111 000 00000 0000 0011122378899999999999999999
Q ss_pred cCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEc
Q 013218 236 AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMAT 315 (447)
Q Consensus 236 ~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~ 315 (447)
++|||||++.+++++.|+++|+++| +.+.+.++|+++|++||++.||.++|+.|++|.++ ..|.++++|||++||++
T Consensus 263 ~~IPh~yvt~~~~~d~ll~~r~~ln--~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~-~~i~~~~~VdisvAVat 339 (470)
T KOG0557|consen 263 QTIPHYYVTVDVNLDKLLALREKLN--FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDE-LVIRQLSSVDISVAVAT 339 (470)
T ss_pred cCCCeEEEeeeeehHHHHHHHHHhh--hcccCcccchhHHHHHHHHHHHhcCCcccceecCC-ccccccCcCChhheeec
Confidence 7899999999999999999999998 45667899999999999999999999999999986 47999999999999999
Q ss_pred CCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEee
Q 013218 316 QHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVP 395 (447)
Q Consensus 316 ~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p 395 (447)
++||++|+|+|++.+.+.+|++++.+|..+||.++|.+++++||||+||||||||++.|+.+|||||+|||++|+..+..
T Consensus 340 ~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~ 419 (470)
T KOG0557|consen 340 PNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSV 419 (470)
T ss_pred cCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EE--cCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 396 RL--SDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 396 ~~--~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
+. +.++++.....|+|||++|||++||+.+++||+.|+++||||..|||
T Consensus 420 v~d~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 420 VPDANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred ccCCCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 74 55667888999999999999999999999999999999999999986
No 12
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=2.4e-80 Score=634.46 Aligned_cols=374 Identities=23% Similarity=0.436 Sum_probs=305.3
Q ss_pred CCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 19 PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 19 ~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
-++.+++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|++|+
T Consensus 87 ~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 87 ESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred ccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence 34455899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcC
Q 013218 99 VGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKG 178 (447)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~ 178 (447)
..++..+...+.. +.+......... +.+ .....++.++|.+|+.+ .++|+.+
T Consensus 167 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~v~asp~~r~~~----------~~~~~~~--------------- 218 (463)
T PLN02226 167 KSEDAASQVTPSQ-KIPETTDPKPSP-PAE-DKQKPKVESAPVAEKPK----------APSSPPP--------------- 218 (463)
T ss_pred cCCccccccCccC-CCCCCCCCCCCC-ccc-cccccCCCcchhhcccc----------CCCCCCC---------------
Confidence 5432111100000 000000000000 000 00011344555554321 1122111
Q ss_pred CCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHH
Q 013218 179 AADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKA 257 (447)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k 257 (447)
++. .. .. +.. . .....+.+|++++||.|+++|.+| +++||||++.++|+|+|+++|+
T Consensus 219 ----~~~-~~------------~~-~~~-~---~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~ 276 (463)
T PLN02226 219 ----PKQ-SA------------KE-PQL-P---PKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS 276 (463)
T ss_pred ----Ccc-cc------------cC-ccc-c---cCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHH
Confidence 000 00 00 000 0 001235689999999999999999 5899999999999999999999
Q ss_pred HhcccCCC-CCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHH
Q 013218 258 SFQNNNSD-PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEIT 336 (447)
Q Consensus 258 ~~~~~~~~-~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~ 336 (447)
++++.+.+ .|.++|+++||+||+++||++||+||++|+++ .|++++++||||||++++||++|||++++++++.+|+
T Consensus 277 ~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~--~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa 354 (463)
T PLN02226 277 QYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGD--DIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIE 354 (463)
T ss_pred HHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCC--EEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHH
Confidence 99865543 47899999999999999999999999999865 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEec
Q 013218 337 KELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGAD 416 (447)
Q Consensus 337 ~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~D 416 (447)
+++++|++++|+|+|+++|++||||||||+|++|+++|+|||||||+|||++|++.++|++. ||++++|++|+|||+||
T Consensus 355 ~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~D 433 (463)
T PLN02226 355 KTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV-GGSVVPRPMMYVALTYD 433 (463)
T ss_pred HHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEE-CCEEEEEeEEEEeEecc
Confidence 99999999999999999999999999999999999999999999999999999999999985 78999999999999999
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHhhhc
Q 013218 417 HRVLDGATVAKFCNEWKQLIENPELLLLQ 445 (447)
Q Consensus 417 HRvvDG~~aa~Fl~~l~~~Le~P~~ll~~ 445 (447)
||++||+++|+||++|+++||+|+.||++
T Consensus 434 HRVIDGa~aA~FL~~lk~~LE~P~~LLl~ 462 (463)
T PLN02226 434 HRLIDGREAVYFLRRVKDVVEDPQRLLLD 462 (463)
T ss_pred hhhhCcHHHHHHHHHHHHHhcCHHHHhhc
Confidence 99999999999999999999999999886
No 13
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=8.6e-80 Score=636.25 Aligned_cols=398 Identities=34% Similarity=0.606 Sum_probs=332.8
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC-
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS- 102 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~- 102 (447)
++++||++|++|.+|+|.+|++++||.|++||+|++|||||+.++++||++|+|.++++++|+.|.+|++|+.|...++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~ 82 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEA 82 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred CCC-CCCCC-CCCCCCCCC-CCC---CCCCC---CCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHH
Q 013218 103 AVP-TPSSD-VLESVKPPG-SEN---SPDSK---LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173 (447)
Q Consensus 103 ~~~-~~~~~-~~~~~~~~~-~~~---~~~~~---~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 173 (447)
... .+.+. .++.+.+.. ..+ ..++. +.........+||++|+||++|||||+.|+|||++|||+++||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~~ 162 (411)
T PRK11856 83 EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAA 162 (411)
T ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHHH
Confidence 211 11000 000000000 000 00000 0000111247899999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHH
Q 013218 174 AVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDAL 252 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l 252 (447)
+......+.++... + ...+. ......+.+|++++||.|+++|.+| .++|||+++.++|+|+|
T Consensus 163 ~~~~~~~~~~~~~~-------~-----~~~~~-----~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l 225 (411)
T PRK11856 163 AAAAAPAAAAAAAA-------A-----AAPPA-----AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL 225 (411)
T ss_pred HhcccccCCCCCCC-------C-----CCCCc-----ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence 85321100000000 0 00000 0011356789999999999999999 58999999999999999
Q ss_pred HHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCH
Q 013218 253 VKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSI 332 (447)
Q Consensus 253 ~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl 332 (447)
+++++++++. +.++||+++|+||+++||++||+||++|.++ ++++|+++|+|+||++++||++|+|++++++++
T Consensus 226 ~~~~k~~~~~----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~--~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl 299 (411)
T PRK11856 226 LALRKQLKAI----GVKLTVTDFLIKAVALALKKFPELNASWDDD--AIVLKKYVNIGIAVATDGGLIVPVIRDADKKSL 299 (411)
T ss_pred HHHHHHHHhh----ccCccHHHHHHHHHHHHHHhCcHhheEEeCC--EEEEcCCcCEEEEEECCCCeEeCcCCCcccCCH
Confidence 9999998642 3689999999999999999999999999875 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEE
Q 013218 333 LEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVN 412 (447)
Q Consensus 333 ~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~ls 412 (447)
.+|+++++++++++|+|+|.++|+.+|||+|||+||+|..+|+|+||+||+|||++|++.++|++. +|+++++.+|+||
T Consensus 300 ~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~ls 378 (411)
T PRK11856 300 FELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLS 378 (411)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999985 7899999999999
Q ss_pred EEecccccChHHHHHHHHHHHHHhhCHHHhhhc
Q 013218 413 IGADHRVLDGATVAKFCNEWKQLIENPELLLLQ 445 (447)
Q Consensus 413 lt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~ 445 (447)
|+||||++||+|+++||+.|+++||+|+.||++
T Consensus 379 lt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~~ 411 (411)
T PRK11856 379 LSFDHRVIDGADAARFLKALKELLENPALLLLE 411 (411)
T ss_pred EEeehhhcCcHHHHHHHHHHHHHHhCHHHHhcC
Confidence 999999999999999999999999999999874
No 14
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=3e-81 Score=598.14 Aligned_cols=428 Identities=55% Similarity=0.849 Sum_probs=367.1
Q ss_pred cccccccccccCCCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCC
Q 013218 6 SRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG 85 (447)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g 85 (447)
+|.||++-+-+--+++.++++++.++||++.|.++.+|+|+|||.|++-|.||||++||+.++|.+.++|+|.+++.+.+
T Consensus 47 ~~s~~~~~~~~t~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~d 126 (474)
T KOG0558|consen 47 SRSWFSNEAMATDSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPD 126 (474)
T ss_pred cccccchhhhhcccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCch
Confidence 35688888877778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeecccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCce
Q 013218 86 NIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRV 165 (447)
Q Consensus 86 ~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI 165 (447)
|...+|++|..++.++..++...+.+.+...... +.+........+++|++|+||+|+||||+.|+|||++|||
T Consensus 127 dia~VGk~Lvd~eve~~~ds~e~s~es~~vs~~~------~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRv 200 (474)
T KOG0558|consen 127 DIAKVGKPLVDLEVEDSQDSPEDSDESPAVSLGE------SKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRV 200 (474)
T ss_pred hhhHhCcceeeeeeccCcCCcccCCccccccCCC------CchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcc
Confidence 9999999999998765432221111111000000 0111112235789999999999999999999999999999
Q ss_pred ehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhcCcceEEEEe
Q 013218 166 LKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVE 245 (447)
Q Consensus 166 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~~iP~~~~~~ 245 (447)
.++||++|+......-.++....-+..+. +.|. .........++.+|+.+.+|+|.+.|+.+..||||.++.
T Consensus 201 LKeDvL~fl~q~pg~~~~~~~~~~a~~~~-------~~ps-~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~d 272 (474)
T KOG0558|consen 201 LKEDVLRFLGQVPGFVTDPSPSEHAVIPG-------PSPS-TKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYVD 272 (474)
T ss_pred hHHHHHHHhccCCCCccCCCCceeecCCC-------CCCc-ccccCcccccceeechhHHHHHHHHHHHHhcCCcccccc
Confidence 99999999965432211111110000000 0000 001112234788999999999999999999999999999
Q ss_pred eeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeee
Q 013218 246 EINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIK 325 (447)
Q Consensus 246 ~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~ 325 (447)
+||+|.|+++|.+++....+.|+|+||++||+||++.||.++|.+|+.++..-..|++...+|||+|++++.||++|.|+
T Consensus 273 EIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiK 352 (474)
T KOG0558|consen 273 EINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIK 352 (474)
T ss_pred ccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCcc
Confidence 99999999999999987778899999999999999999999999999999876689999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceee
Q 013218 326 NVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYP 405 (447)
Q Consensus 326 ~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~ 405 (447)
|++.+|+.||++++++|.++.+.|+|++.|+.+|||++||+|.+|+++..|+|++||+||.++|+|...|.++..|+++.
T Consensus 353 N~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~ 432 (474)
T KOG0558|consen 353 NVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYP 432 (474)
T ss_pred ccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcCC
Q 013218 406 SPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 447 (447)
Q Consensus 406 r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~~ 447 (447)
..+|.|+++.||||+||+..|+|-+.+|+|||||+.|||+|+
T Consensus 433 a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll~lk 474 (474)
T KOG0558|consen 433 ASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLLQLK 474 (474)
T ss_pred eEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhhccC
Confidence 999999999999999999999999999999999999999974
No 15
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=3.7e-79 Score=622.14 Aligned_cols=379 Identities=25% Similarity=0.453 Sum_probs=312.7
Q ss_pred CCCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEE
Q 013218 17 DLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 96 (447)
Q Consensus 17 ~~~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~ 96 (447)
+-+...+.+|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.
T Consensus 38 ~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~ 117 (418)
T PTZ00144 38 SKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSE 117 (418)
T ss_pred ccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEE
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218 97 LVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176 (447)
Q Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~ 176 (447)
|+..++....+. .+..+..+. . +.+. ......|.+|++++++++++..+.. ..
T Consensus 118 I~~~~~~~~~~~--~~~~~~~~~-~----~~~~----~~~~~~p~~~~~a~~~~~a~p~vr~---------------~~- 170 (418)
T PTZ00144 118 IDTGGAPPAAAP--AAAAAAKAE-K----TTPE----KPKAAAPTPEPPAASKPTPPAAAKP---------------PE- 170 (418)
T ss_pred EcCCCccccccc--cccCCCCCc-c----CCCC----CCCCCCCccccccccccCCchhhhc---------------cc-
Confidence 975443211100 000000000 0 0000 0001125566666666666555521 00
Q ss_pred cCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHH
Q 013218 177 KGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKL 255 (447)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~ 255 (447)
.++.... . + ...+ ......+.+|++++||.|+++|++| +++||||++.++|+|+|+++
T Consensus 171 ----~~~~~~~----~-~-------~~~~-----~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~ 229 (418)
T PTZ00144 171 ----PAPAAKP----P-P-------TPVA-----RADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMEL 229 (418)
T ss_pred ----cCCCCCC----C-C-------CCcc-----ccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHH
Confidence 0000000 0 0 0000 0000134579999999999999999 48999999999999999999
Q ss_pred HHHhcccCCC-CCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHH
Q 013218 256 KASFQNNNSD-PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILE 334 (447)
Q Consensus 256 ~k~~~~~~~~-~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~ 334 (447)
|+++++.+.. .|.++|+++||+||+++||++||+||++|+++ ++++++++|||+||++++||++|||++++++++.+
T Consensus 230 r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~--~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~e 307 (418)
T PTZ00144 230 RKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGD--EIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAE 307 (418)
T ss_pred HHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCC--EEEEecCCCEEEEEECCCCEEEccCCCcccCCHHH
Confidence 9999865443 47899999999999999999999999999765 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEE
Q 013218 335 ITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIG 414 (447)
Q Consensus 335 i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt 414 (447)
|++++++|++++|+|+|.++|++||||||||+|++|+++|+|||||||+|||++|++.++|++. ||++++|++|+|||+
T Consensus 308 Ia~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~-~g~i~~r~~m~lsLs 386 (418)
T PTZ00144 308 IEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVV-GNEIVIRPIMYLALT 386 (418)
T ss_pred HHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEE-CCEEEEEeEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999995 789999999999999
Q ss_pred ecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218 415 ADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446 (447)
Q Consensus 415 ~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~ 446 (447)
||||++||+++|+||++|+++||+|+.||+++
T Consensus 387 ~DHRviDGa~AA~FL~~lk~~LE~P~~lll~~ 418 (418)
T PTZ00144 387 YDHRLIDGRDAVTFLKKIKDLIEDPARMLLDL 418 (418)
T ss_pred cchhhhChHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 99999999999999999999999999999874
No 16
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=1.5e-71 Score=557.65 Aligned_cols=298 Identities=25% Similarity=0.416 Sum_probs=258.4
Q ss_pred CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCC
Q 013218 135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYP 214 (447)
Q Consensus 135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (447)
.+++||+||+||+|+||||+.|+||||+|||+++||++|+...... +..+..+. ..+ ....+.. .....
T Consensus 48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~--~~~~~~~~--~~~----~~~~~~~---~~~~~ 116 (347)
T PRK14843 48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIEN--DSIKSPAQ--IEK----VEEVPDN---VTPYG 116 (347)
T ss_pred cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccC--ccccCCCC--Ccc----ccCCCcc---cccCC
Confidence 4679999999999999999999999999999999999998432110 10000000 000 0000000 00112
Q ss_pred CCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccce
Q 013218 215 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNS 292 (447)
Q Consensus 215 ~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~ 292 (447)
..+.+|++++||.|+++|.+| +++||||++.+||+|.|+++|+++++.+. ..|.++|+++||+||++.||++||.||+
T Consensus 117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na 196 (347)
T PRK14843 117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA 196 (347)
T ss_pred cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence 245689999999999999999 58999999999999999999999985443 3478999999999999999999999999
Q ss_pred EEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCc
Q 013218 293 CFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGK 372 (447)
Q Consensus 293 ~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~ 372 (447)
+|++++.++++|+++||||||++++||++|||++++++++.+|++++++|+++||+|+|.++|++||||||||+|+||+.
T Consensus 197 ~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~ 276 (347)
T PRK14843 197 SLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQ 276 (347)
T ss_pred EEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCccc
Confidence 99876557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 373 FGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 373 ~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
+|+|||||||+|||++|++.++|++. ||++++|++|+|||+||||++||+++++||+.|+++||+|+.||+
T Consensus 277 ~~tpIInpPq~aIlgvG~i~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 277 SFGPIINQPNSAILGVSSTIEKPVVV-NGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred ceeccccCCceEEEecCCcceeeEEE-CCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 99999999999999999999999985 789999999999999999999999999999999999999998764
No 17
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=3e-71 Score=546.72 Aligned_cols=302 Identities=32% Similarity=0.583 Sum_probs=258.0
Q ss_pred ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCC
Q 013218 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPD 215 (447)
Q Consensus 136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (447)
+++||+||+||+||||||+.|+|||++|||+++||++|+.+....+++.. +.+...... .+..+.+. +. .....
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~-~~--~~~~~ 75 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAE-AASVSSAQQ--AAKTAAPA-AA--PPKLE 75 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCcc-ccccccccc--cccccCCc-cc--ccCCC
Confidence 56899999999999999999999999999999999999853211011100 000000000 00000000 00 00112
Q ss_pred CceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218 216 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC 293 (447)
Q Consensus 216 ~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~ 293 (447)
++.+|++++|+.|+++|.+|+ ++|||+++.++|+|+|+++|+++++.+. ..|.++||++||+||+++||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 456899999999999999995 8999999999999999999999986543 34789999999999999999999999999
Q ss_pred EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218 294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 373 (447)
Q Consensus 294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~ 373 (447)
|+++++++++++++||||||++++||++|||++++++|+.+|++++++|++++|+|+|.++|++||||||||+|++|+.+
T Consensus 156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~ 235 (306)
T PRK11857 156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY 235 (306)
T ss_pred EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence 98765689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
|+||||+||+|||++|++.++|++ .||++++|++|+|||+||||++||+++++||++|+++||+|+.|++
T Consensus 236 ~tpiIn~pq~aILgvG~i~~~pvv-~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~ 305 (306)
T PRK11857 236 GVPVINYPELAIAGVGAIIDKAIV-KNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV 305 (306)
T ss_pred eecccCCCccceeecccceEEeEE-ECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence 999999999999999999999999 4799999999999999999999999999999999999999997764
No 18
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=9.1e-72 Score=535.57 Aligned_cols=388 Identities=24% Similarity=0.449 Sum_probs=307.7
Q ss_pred CCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 18 LPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 18 ~~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
+....++++..|.++|+++||.|.+|++++||.|++++.|++|||||.+++|.||.+|+|.+++|++||+|+.|+.|+.|
T Consensus 67 ~~~ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i 146 (457)
T KOG0559|consen 67 VRSTSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKI 146 (457)
T ss_pred eeccceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEe
Confidence 33445889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218 98 VVGDSAVPTP-SSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176 (447)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~ 176 (447)
....+...+. ..++...+.......+++.. .+ .+....+.|.++
T Consensus 147 ~~gaApa~~~~~apa~~~pk~~~a~~a~p~~-~s-~~~p~~~apv~e--------------------------------- 191 (457)
T KOG0559|consen 147 SPGAAPAKGGASAPAKAEPKTAPAAAAPPKP-SS-KPPPKEAAPVAE--------------------------------- 191 (457)
T ss_pred cCCCCCccccccCCCccCCCCCCCCCCCCCc-cC-CCCccccCCCCC---------------------------------
Confidence 8753322211 11111101000000010000 00 000011111110
Q ss_pred cCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHH
Q 013218 177 KGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKL 255 (447)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~ 255 (447)
..++|.+..+..+.+...+...+.+++... ......+.+++|.+||+.||.|+..|+ +....+.+.||||++|+++
T Consensus 192 --~p~~p~~~~P~~~~a~k~~v~~~~~~p~~~-~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~m 268 (457)
T KOG0559|consen 192 --SPPAPSSPEPVPASAKKPSVAQPKPPPSEG-ATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEM 268 (457)
T ss_pred --CCCCCCCCCCCCccccCccccCCCCCcccc-cCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 000000000000000000000000111100 111345788999999999999999997 5777888899999999999
Q ss_pred HHHhcccC-CCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHH
Q 013218 256 KASFQNNN-SDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILE 334 (447)
Q Consensus 256 ~k~~~~~~-~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~ 334 (447)
|+++++.+ +++|.|+.|+.+|+||++.||++.|.+|+.++++ +|+|+|++||++||+++.||++|||||++.+++.|
T Consensus 269 Rk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~--~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~ad 346 (457)
T KOG0559|consen 269 RKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGD--DIVYRDYVDISVAVATPKGLVVPVIRNAESMNFAD 346 (457)
T ss_pred HHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCC--eeEEeecceeEEEeecCCceeeeeecccccccHHH
Confidence 99999876 4789999999999999999999999999999987 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEE
Q 013218 335 ITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIG 414 (447)
Q Consensus 335 i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt 414 (447)
|..++..|..+||+|+|..+||.||||||||=|.||..+.||||||||+||||+..|.++|++. +|++++|++|.+.||
T Consensus 347 IE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v-~G~Vv~RPMMYvALT 425 (457)
T KOG0559|consen 347 IEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVV-GGQVVPRPMMYVALT 425 (457)
T ss_pred HHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceee-CCEeeeccceEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999996 799999999999999
Q ss_pred ecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218 415 ADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446 (447)
Q Consensus 415 ~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~ 446 (447)
||||++||.+|.-||+.+|+++|||..|||+.
T Consensus 426 YDHRliDGREAVtFLr~iK~~VEDP~~mll~l 457 (457)
T KOG0559|consen 426 YDHRLIDGREAVTFLRKIKEAVEDPRKMLLDL 457 (457)
T ss_pred ccccccccHHHHHHHHHHHHHhhCHHHHhhcC
Confidence 99999999999999999999999999999874
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=2.6e-60 Score=453.35 Aligned_cols=228 Identities=37% Similarity=0.675 Sum_probs=203.2
Q ss_pred CCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218 215 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 293 (447)
Q Consensus 215 ~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~ 293 (447)
+++++|++++||+|+++|++|+ ++||||++.+||+|+|+++|+++++.....+.++|+++|++||+++||++||+||++
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~ 82 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS 82 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence 4688999999999999999996 899999999999999999999998765444559999999999999999999999999
Q ss_pred EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218 294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 373 (447)
Q Consensus 294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~ 373 (447)
|++++ ++++++++|||+||++++||++|||++++++|+.+|+++++++++++|+|+|.++|++||||||||+|++|+++
T Consensus 83 ~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~ 161 (231)
T PF00198_consen 83 WDGDG-EIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES 161 (231)
T ss_dssp EETTS-EEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred ccccc-ceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence 99875 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
|+|+|||||+|||++|++.++|++ ++|+++++++|++||+||||++||+++++||++|+++||+|++|||
T Consensus 162 ~~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 162 FTPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp EE----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred eEccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 999999999999999999999999 6889999999999999999999999999999999999999999986
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=8e-49 Score=417.73 Aligned_cols=223 Identities=26% Similarity=0.392 Sum_probs=210.4
Q ss_pred CCceecCchHHHHHHHHHHHhcCcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218 215 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC 293 (447)
Q Consensus 215 ~~~~~~~s~~rk~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~ 293 (447)
+++.+||++++++|+++|..|+.+|+++...+|+++.|+++|+.+|+.+. ..|.|+||+++|+||+++||++||.+|++
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas 193 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH 193 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence 45788999999999999999999999999999999999999999998765 56889999999999999999999999999
Q ss_pred Ecc-CC-cEEEEcccceEEeEEEcC-----CCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEec
Q 013218 294 FNE-ES-LEVILKGSHNIGIAMATQ-----HGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNI 366 (447)
Q Consensus 294 ~~~-~~-~~i~~~~~v~igiav~~~-----~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnl 366 (447)
|++ |+ ..++++++||||+||+++ +||+||+|+++++++|.+|.+++++++.|||+|+|+++|++||||||||+
T Consensus 194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~ 273 (1228)
T PRK12270 194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP 273 (1228)
T ss_pred eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence 985 33 248999999999999998 58999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCceeEEEecceEEeeEEcC-----CCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhh
Q 013218 367 GAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSD-----DGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 367 g~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~-----dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
|++|..+|+|+||+||+|||++|++...+++.. ++++.++++|+||+|||||+|||+++++||+.|+++|+
T Consensus 274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred CcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 999999999999999999999999998888742 46799999999999999999999999999999999999
No 21
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.94 E-value=3.9e-25 Score=208.36 Aligned_cols=181 Identities=15% Similarity=0.144 Sum_probs=155.8
Q ss_pred cceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCC
Q 013218 238 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH 317 (447)
Q Consensus 238 iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~ 317 (447)
-|.|+++.+||||+|+++.|+. +++|++.++||+++|++++|+||.++.++ ++++||.++.++++..++
T Consensus 30 ~~~fsiT~~iDiT~l~~~~K~~---------~~~fy~~~ly~v~kavN~~~eFR~r~~~~--~v~~~D~i~ps~Ti~~~~ 98 (219)
T PRK13757 30 QCTYNQTVQLDITAFLKTVKKN---------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWDSVHPCYTVFHEQ 98 (219)
T ss_pred CCceEEEEEEEHHHHHHHHHHc---------CCChHHHHHHHHHHHHhcCHhHheEEECC--eEEEEeEEeeeEEEEeCC
Confidence 3459999999999999999884 89999999999999999999999999654 788899999999999877
Q ss_pred CeEeeeeeccCCCCHHHHHHHHHHHHHHhhcC-CCCCCCCCCCeEEEEecCCCCCcccccccCC-C--ceeEEEecceEE
Q 013218 318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNPADNSGGTITLSNIGAIGGKFGAPLLNL-P--EVAIIAMGRIEK 393 (447)
Q Consensus 318 Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g-~l~~~~~~~gtftISnlg~~G~~~~~pii~~-p--q~ail~vG~i~~ 393 (447)
+.++-.+.-.+..++.+|.+...+.++++++. .+.++....+.|.||+++|+..++++.-++. . ..+++++|+..+
T Consensus 99 ~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~ 178 (219)
T PRK13757 99 TETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT 178 (219)
T ss_pred CceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEE
Confidence 65666888899999999999999989988875 4555555668999999999987776443332 2 357999999986
Q ss_pred eeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218 394 VPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIEN 438 (447)
Q Consensus 394 ~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~ 438 (447)
+ +| |.+||||+++||.++||+|+++|++.||++|++
T Consensus 179 ~-----~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 179 Q-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred E-----CC----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 3 67 789999999999999999999999999999976
No 22
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.94 E-value=3.5e-25 Score=207.42 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=140.3
Q ss_pred CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcC
Q 013218 237 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQ 316 (447)
Q Consensus 237 ~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~ 316 (447)
.-|+|+++.++|||+|+++.|+. +++|+.+++|++++|++++|+||.++.++| ++++|+.++++++|..+
T Consensus 24 ~~p~~svT~~lDvT~l~~~~K~~---------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g-~v~~~d~i~ps~Tv~~~ 93 (206)
T PF00302_consen 24 DNPYFSVTVNLDVTNLYKYAKEK---------GLSFFPAYLYAIMKAANEIPEFRYRIVDDG-EVVYYDRIDPSYTVFHK 93 (206)
T ss_dssp SBEEEEEEEEEE-HHHHHHHHHT---------T--HHHHHHHHHHHHHTTSGGGCEEEETTS-CEEEESS-EEEEEEEET
T ss_pred CCceEecceeEEhHHHHHHHHHc---------CCCcHHHHHHHHHHHHhcCHHHheeeeCCC-cEEEECCcceeeeEEeC
Confidence 57999999999999999999884 899999999999999999999999998764 89999999999999876
Q ss_pred CCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcC-CCCCCC-CCCCeEEEEecCCCCCcccccccCC-C--ceeEEEecce
Q 013218 317 HGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNPAD-NSGGTITLSNIGAIGGKFGAPLLNL-P--EVAIIAMGRI 391 (447)
Q Consensus 317 ~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g-~l~~~~-~~~gtftISnlg~~G~~~~~pii~~-p--q~ail~vG~i 391 (447)
++..+..+.-.+..++.+|.+...+.++++++. .+.+++ ...+.|.+|+++|+..++++.-+.. + ..+++++|++
T Consensus 94 ~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~ 173 (206)
T PF00302_consen 94 DDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKY 173 (206)
T ss_dssp TTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--
T ss_pred CCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeee
Confidence 543555777788999999999999999998764 455543 4557999999999988876543333 2 3579999999
Q ss_pred EEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHH
Q 013218 392 EKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWK 433 (447)
Q Consensus 392 ~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~ 433 (447)
.++ +| |..||||+++||+++||+|+++|+++||
T Consensus 174 ~~~-----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 174 FEE-----NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp EEE-----TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred EeE-----CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 974 67 8899999999999999999999999986
No 23
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.86 E-value=1.9e-20 Score=169.25 Aligned_cols=189 Identities=11% Similarity=0.106 Sum_probs=158.6
Q ss_pred HhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEE
Q 013218 234 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM 313 (447)
Q Consensus 234 ~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav 313 (447)
++...|||.++.+.|||++....|+. ++||++.+++|+.+++++|+|||.++.++ ++++|+.+++.++|
T Consensus 24 R~~~~p~y~i~~~LDvtn~~~~vk~~---------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~--~~~~~d~v~p~~tv 92 (219)
T COG4845 24 RLLQYPHYDINLQLDVTNFYGYVKEN---------GLSFFPALLYAVTRCANRHQEFRLRIQNG--QLGYWDNVPPMYTV 92 (219)
T ss_pred hhcccceEeeeeeeehhHHHHHHHHc---------CCcchHHHHHHHHHHhcccHHhHhhhcCC--eeEEeecCCcceEE
Confidence 44579999999999999999999884 89999999999999999999999999876 89999999999999
Q ss_pred EcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCC-CCCCCC-CCCeEEEEecCCCCCcccccccCCC---ceeEEEe
Q 013218 314 ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNE-LNPADN-SGGTITLSNIGAIGGKFGAPLLNLP---EVAIIAM 388 (447)
Q Consensus 314 ~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~-l~~~~~-~~gtftISnlg~~G~~~~~pii~~p---q~ail~v 388 (447)
..+++.++-++.-....++.+|.+....-+++.+++. +.+++. ....+.+||++|+..++++.-++-. ...++.+
T Consensus 93 ~~~~~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~ 172 (219)
T COG4845 93 FHGETETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYA 172 (219)
T ss_pred EcCCCcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEee
Confidence 9988767778888899999999999988888888764 333332 2356778888888655544433311 2458999
Q ss_pred cceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHh
Q 013218 389 GRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELL 442 (447)
Q Consensus 389 G~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~l 442 (447)
|+..+ +|| +.+||+++++||..+||.|+++|++.|++++++|-.+
T Consensus 173 Grf~~-----~~G----kl~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~ 217 (219)
T COG4845 173 GRFYE-----EDG----KLTLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI 217 (219)
T ss_pred cceec-----cCC----eEEEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence 99887 589 5579999999999999999999999999999998654
No 24
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.74 E-value=6.2e-18 Score=133.20 Aligned_cols=74 Identities=27% Similarity=0.555 Sum_probs=71.9
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
.+|++|.+|..+.+++|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999976
No 25
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.73 E-value=1.7e-17 Score=168.32 Aligned_cols=119 Identities=24% Similarity=0.366 Sum_probs=102.9
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 103 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~ 103 (447)
.+++||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.+.+....
T Consensus 3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~~ 82 (371)
T PRK14875 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEVS 82 (371)
T ss_pred eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999753210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHH
Q 013218 104 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 170 (447)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV 170 (447)
. ......++|.+++++++ ++++....+++..+++...++
T Consensus 83 ~---------------------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 121 (371)
T PRK14875 83 D---------------------------AEIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV 121 (371)
T ss_pred c---------------------------ccccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence 0 00124578899999888 899999888888777655554
No 26
>PRK06748 hypothetical protein; Validated
Probab=99.63 E-value=1.6e-15 Score=120.87 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=61.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe-CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQS-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet-~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
.|+|.+|++++||.|++||+|++||| ||+..+|+||.+|+|.++++++||.|++|++|+.|+.
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 59999999999999999999999999 8999999999999999999999999999999999964
No 27
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.53 E-value=5.6e-14 Score=109.74 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=60.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999874
No 28
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.50 E-value=1.4e-13 Score=143.76 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=75.0
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC-eeecccEEEEEecCCC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGDS 102 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~-~v~~G~~l~~i~~~~~ 102 (447)
++++||++|++|++|+|.+|++++||.|++||+|++|||||++++++||.+|+|.++++++|+ .|.+|++|+.|+.+++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 479999999999999999999999999999999999999999999999999999999999996 7999999999976543
No 29
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.49 E-value=1.6e-13 Score=107.46 Aligned_cols=72 Identities=22% Similarity=0.430 Sum_probs=69.5
Q ss_pred EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 26 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 26 ~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
+.+|+++.++.+|++.+|++++||.|++||+|+.+|++|+..+|+||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999864
No 30
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.48 E-value=9.1e-14 Score=122.82 Aligned_cols=63 Identities=27% Similarity=0.343 Sum_probs=61.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
.-|++.+.+|++||.|++||+||+||+||+.++|+||.+|+|.+|++++||.|..||+|+.|+
T Consensus 77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 359999999999999999999999999999999999999999999999999999999999986
No 31
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.43 E-value=7.4e-13 Score=103.05 Aligned_cols=63 Identities=30% Similarity=0.401 Sum_probs=60.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|.+|++++||.|++||+|+++|+||+.+++.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 8 ~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 8 MAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999874
No 32
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.40 E-value=1.5e-12 Score=141.57 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=72.7
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
++|+||+|| |.||+|++|+|++||.|++||+|++|||||+.++|+||.+|+|.++++++|+.|.+|++|+.|+..
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 479999999 999999999999999999999999999999999999999999999999999999999999999865
No 33
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.40 E-value=2.5e-13 Score=92.60 Aligned_cols=38 Identities=47% Similarity=0.713 Sum_probs=34.2
Q ss_pred CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHH
Q 013218 135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 172 (447)
Q Consensus 135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~ 172 (447)
++.+||+||++|+|+|||+++|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 47899999999999999999999999999999999985
No 34
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.35 E-value=3.1e-12 Score=137.84 Aligned_cols=77 Identities=26% Similarity=0.446 Sum_probs=74.4
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
++++||+||++|.+|+|.+|+|++||.|+.||+|+++||||+.++++||.+|+|.++++++|+.|.+|++|+.|...
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999753
No 35
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.33 E-value=4.8e-12 Score=109.71 Aligned_cols=62 Identities=31% Similarity=0.492 Sum_probs=60.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 45999999999999999999999999999999999999999999999999999999999987
No 36
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.29 E-value=1.5e-11 Score=131.84 Aligned_cols=78 Identities=38% Similarity=0.642 Sum_probs=74.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
++++||++|+ +.+|+|.+|+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++|+.|..|++|+.++....
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~~ 80 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA 80 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccccc
Confidence 4799999999 99999999999999999999999999999999999999999999999999999999999999975433
No 37
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.28 E-value=1.3e-11 Score=110.28 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=60.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999987
No 38
>PRK07051 hypothetical protein; Validated
Probab=99.25 E-value=4.5e-11 Score=95.56 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=63.0
Q ss_pred EEEecCCCCCCCceEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEE
Q 013218 24 VDVPLAQTGEGIAECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 96 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~ 96 (447)
.++..|. .|++.+ |++++||.|++||+|+++|+||+.++|+||.+|+|.++++++|+.|..|++|+.
T Consensus 4 ~~~~ap~------~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~ 77 (80)
T PRK07051 4 HEIVSPL------PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77 (80)
T ss_pred cEEeCCC------ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence 3455663 477888 999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 013218 97 LV 98 (447)
Q Consensus 97 i~ 98 (447)
++
T Consensus 78 i~ 79 (80)
T PRK07051 78 IE 79 (80)
T ss_pred Ee
Confidence 85
No 39
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.23 E-value=3.3e-11 Score=128.89 Aligned_cols=75 Identities=31% Similarity=0.527 Sum_probs=72.2
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 25 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 25 ~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+|+||+||+. .+|+|++|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|...
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 5899999987 99999999999999999999999999999999999999999999999999999999999999753
No 40
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.22 E-value=6.2e-11 Score=90.54 Aligned_cols=62 Identities=32% Similarity=0.485 Sum_probs=59.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
.+|+|.+|++++||.|++||+|++++++|...+|+||.+|+|.+++++.|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999864
No 41
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.21 E-value=3.9e-11 Score=114.05 Aligned_cols=62 Identities=26% Similarity=0.421 Sum_probs=59.4
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 37 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 37 ~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
.|++.+ |+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 477777 99999999999999999999999999999999999999999999999999999985
No 42
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.19 E-value=5.2e-11 Score=107.06 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=59.2
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 37 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 37 ~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
-|++.+ |+|++||.|++||+||.||+||+.++|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 478876 99999999999999999999999999999999999999999999999999999874
No 43
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.16 E-value=4.3e-10 Score=86.09 Aligned_cols=73 Identities=34% Similarity=0.651 Sum_probs=70.3
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 25 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 25 ~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
++.+|+++.+..+|+|.+|+++.|+.|..|++++.++++|+...+.++.+|++.+..+.+|+.+..|++|+++
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999874
No 44
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.14 E-value=1.4e-10 Score=104.27 Aligned_cols=62 Identities=29% Similarity=0.449 Sum_probs=58.8
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 37 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 37 ~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
-|++.. |+|++||.|++||+||.||+||+.++|+||.+|+|.+++++.|+.|..|++|+.|+
T Consensus 87 ~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 87 VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 477776 99999999999999999999999999999999999999999999999999999873
No 45
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.09 E-value=2.7e-10 Score=122.06 Aligned_cols=64 Identities=27% Similarity=0.412 Sum_probs=61.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
-.|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 532 m~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 532 IPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred cceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 3599999999999999999999999999999999999999999999999999999999999964
No 46
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.95 E-value=1.7e-09 Score=125.00 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=60.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 469999999999999999999999999999999999999999999999999999999999874
No 47
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.92 E-value=1.9e-09 Score=115.95 Aligned_cols=59 Identities=29% Similarity=0.379 Sum_probs=56.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETL 94 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l 94 (447)
..|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus 524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999875
No 48
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.91 E-value=3.3e-09 Score=114.13 Aligned_cols=62 Identities=31% Similarity=0.408 Sum_probs=60.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
..|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999987
No 49
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.87 E-value=4.2e-09 Score=120.73 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=60.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 459999999999999999999999999999999999999999999999999999999999874
No 50
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.81 E-value=1.1e-08 Score=110.28 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=61.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|.+|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 458999999999999999999999999999999999999999999999999999999999985
No 51
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.80 E-value=1.3e-08 Score=105.52 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
.|+|+.+.|++|+.|.+||+|+++|.|||++.|+||.+|+|.++.+.+|+.|..|++|+.++
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 49999999999999999999999999999999999999999999999999999999999886
No 52
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.70 E-value=3.5e-08 Score=113.68 Aligned_cols=63 Identities=30% Similarity=0.486 Sum_probs=60.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|++|+|++||.|++||+|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1083 m~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1083 MPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred ceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 359999999999999999999999999999999999999999999999999999999999985
No 53
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.56 E-value=7.5e-08 Score=102.95 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=60.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
.|.|+++.|+.||.|++||+|+.+|+|||+..|.||.+|+|.+++|..||.|..|+.|..++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 48999999999999999999999999999999999999999999999999999999998875
No 54
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.28 E-value=1.1e-06 Score=92.58 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=60.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
.|+|+++.|++|+.|++||+|+.+.+||+++-|.||.+|++.++.+..|+.+..|+.|+.++
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 58999999999999999999999999999999999999999999999999999999999886
No 55
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.17 E-value=3.5e-06 Score=69.62 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=53.3
Q ss_pred CceEEEecCCCCCCCceEEEEE-EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCe
Q 013218 21 SGIVDVPLAQTGEGIAECELLK-WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87 (447)
Q Consensus 21 ~~~~~~~~p~~~~~~~~g~i~~-w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~ 87 (447)
.....+-|-+.+..+ -|.|.. |++++|+.|++||+|++||++|+..+|.||.+|+|.++..+.++.
T Consensus 13 ~~~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 13 DGIATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred CcEEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 345666666666543 577777 666779999999999999999999999999999999997766554
No 56
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.05 E-value=3.6e-06 Score=86.47 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=59.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
.|.|.+++|++||.|.+||.|+.++.||+.+.++||.+|++..+.++.|++|.-|.+|.+++
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 37899999999999999999999999999999999999999999999999999999998763
No 57
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.93 E-value=1.9e-05 Score=66.70 Aligned_cols=63 Identities=22% Similarity=0.224 Sum_probs=47.3
Q ss_pred ceEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCC
Q 013218 22 GIVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG 85 (447)
Q Consensus 22 ~~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g 85 (447)
....+-|-+.+.. .=|.|+.+.. ++|+.|++||++++||++|+..+|.||.+|+|.++.-+..
T Consensus 15 ~~~~vGiT~~aq~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 15 QVVRLGLTSRMQE-NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred CEEEEeeCHHHHH-hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 3445555554442 2345555544 6699999999999999999999999999999999864433
No 58
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.83 E-value=7.2e-05 Score=77.85 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=57.7
Q ss_pred ceEEEEEEE-cCCCCeecCCCeEEEEEeC------------------------------------------------cee
Q 013218 36 AECELLKWF-VKEGDEIEEFQPLCAVQSD------------------------------------------------KAT 66 (447)
Q Consensus 36 ~~g~i~~w~-v~~Gd~V~~g~~l~~iet~------------------------------------------------K~~ 66 (447)
..|.|.+++ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 469999998 9999999999999999831 013
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|+||++|+|.+..+.+|+.|..|++|+.|...+
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 244 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence 46999999999999999999999999999997644
No 59
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.80 E-value=4.6e-05 Score=64.82 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=45.8
Q ss_pred ceEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 22 GIVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 22 ~~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
....+-|-+.+.. .-|.|+.+.. ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 17 ~~~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 17 RIVRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CEEEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 3455555555443 2355555555 669999999999999999999999999999999984
No 60
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.78 E-value=3.4e-05 Score=87.31 Aligned_cols=67 Identities=25% Similarity=0.542 Sum_probs=61.6
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 34 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 34 ~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+-..|++++|+|+.|+.|..||+-++||.|||.+.+.|+.+|+| +...++|+.+.+|++|+.+.-++
T Consensus 690 sPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 690 SPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD 756 (2196)
T ss_pred CCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence 33679999999999999999999999999999999999999999 55689999999999999998544
No 61
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.74 E-value=4.5e-05 Score=67.67 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=51.1
Q ss_pred ceEEEecCCCCCCCceEEEEEEEcC-CCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCC
Q 013218 22 GIVDVPLAQTGEGIAECELLKWFVK-EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 84 (447)
Q Consensus 22 ~~~~~~~p~~~~~~~~g~i~~w~v~-~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~ 84 (447)
.+..+-|-++... .-|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++...-
T Consensus 29 g~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l 91 (144)
T PRK13380 29 GTVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEAL 91 (144)
T ss_pred CEEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhh
Confidence 3556666655543 35788888887 89999999999999999999999999999999986543
No 62
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.73 E-value=9.3e-05 Score=74.57 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=32.0
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|+||.+|+|..+.+++|+.|..|++|+.|.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence 36899999999999999999999999999998643
No 63
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.68 E-value=3.2e-05 Score=78.44 Aligned_cols=42 Identities=52% Similarity=0.752 Sum_probs=38.8
Q ss_pred CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218 135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176 (447)
Q Consensus 135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~ 176 (447)
+..+||.+|++|+++|||++.|+|||++|||+++||++|...
T Consensus 5 ~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 5 KLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred cccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 456899999999999999999999999999999999999754
No 64
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.68 E-value=7.9e-05 Score=74.70 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=57.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 65 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~-------------------------------------------------- 65 (447)
..|.|.+++|++||.|++||+|++++....
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 579999999999999999999999986310
Q ss_pred --------------------eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 --------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 --------------------~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
...|+||++|+|.++.+++|+.|..|++|+.|...
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 12489999999999999999999999999988754
No 65
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.65 E-value=0.00014 Score=63.26 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=56.4
Q ss_pred ceEEEecCCCCCCCceEEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEE---eeCCCCeee---ccc-E
Q 013218 22 GIVDVPLAQTGEGIAECELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL---LHAPGNIVK---VGE-T 93 (447)
Q Consensus 22 ~~~~~~~p~~~~~~~~g~i~~w~-v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~---~v~~g~~v~---~G~-~ 93 (447)
....+-|-+++.. .-|.|..+. .++|+.|++||+++.||++|...+|.||.+|+|.++ +....+.+. -|+ -
T Consensus 22 ~~~~vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gW 100 (127)
T PRK01202 22 DTATVGITDHAQE-QLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGW 100 (127)
T ss_pred CEEEEeeCHHHHh-hcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCce
Confidence 4555555555442 334555554 356999999999999999999999999999999999 444445554 443 7
Q ss_pred EEEEecC
Q 013218 94 LLKLVVG 100 (447)
Q Consensus 94 l~~i~~~ 100 (447)
|+.|...
T Consensus 101 l~~v~~~ 107 (127)
T PRK01202 101 LFKIKPS 107 (127)
T ss_pred EEEEEeC
Confidence 7777654
No 66
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.61 E-value=0.00011 Score=73.21 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=57.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 65 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~-------------------------------------------------- 65 (447)
.+|+|.++++++||.|++||+|+.+++...
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 469999999999999999999999975321
Q ss_pred ---------------------eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ---------------------~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
...|+||.+|+|..+.+.+|+.+..|++|+.|...
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence 23599999999999999999999999999999753
No 67
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.60 E-value=0.00015 Score=73.72 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=31.5
Q ss_pred EEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.|+||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus 210 ~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 210 TVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred EEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 5899999999999999999999999999998654
No 68
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.43 E-value=0.00039 Score=71.92 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=32.0
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|+||++|+|..+.+++|+.|..|++|+.|.+.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 36999999999999999999999999999997654
No 69
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.38 E-value=0.00039 Score=71.78 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=55.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 65 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~-------------------------------------------------- 65 (447)
..|+|.++++++||.|++||+|+.|+....
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999986311
Q ss_pred ---------------------eeEEeCCCCeEEEEEeeCCCCeeecc--cEEEEEecC
Q 013218 66 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVVG 100 (447)
Q Consensus 66 ---------------------~~~i~ap~~G~i~~~~v~~g~~v~~G--~~l~~i~~~ 100 (447)
...|+||++|+|.+.++++|+.|..| ++|+.|...
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence 12499999999999999999999986 588888653
No 70
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.37 E-value=0.00031 Score=72.84 Aligned_cols=64 Identities=23% Similarity=0.309 Sum_probs=54.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 65 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~-------------------------------------------------- 65 (447)
..|+|.++++++||.|++||+|++|+....
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 469999999999999999999999984321
Q ss_pred ---------------------eeEEeCCCCeEEEEEeeCCCCeeecccE--EEEEec
Q 013218 66 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGET--LLKLVV 99 (447)
Q Consensus 66 ---------------------~~~i~ap~~G~i~~~~v~~g~~v~~G~~--l~~i~~ 99 (447)
...|+||++|+|.+.+++.|+.|..|++ |+.|..
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 208 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ 208 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence 1238999999999999999999999985 666654
No 71
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.34 E-value=0.00038 Score=70.25 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=31.2
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|+||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 4699999999999999999999999999999653
No 72
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.34 E-value=0.00031 Score=50.76 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=28.7
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|.+|.+|+|.++++++|+.|..|++|+.++..
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 5688888999999999999999999998888753
No 73
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.31 E-value=0.00034 Score=60.81 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=45.7
Q ss_pred eEEEecCCCCCCCceEEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC
Q 013218 23 IVDVPLAQTGEGIAECELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83 (447)
Q Consensus 23 ~~~~~~p~~~~~~~~g~i~~w~-v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~ 83 (447)
...|-|-+.+.. .-|.|..+. .++|+.|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus 22 ~~~vGiT~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~ 82 (127)
T TIGR00527 22 TATVGITEFAQD-ELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA 82 (127)
T ss_pred EEEEeecHHHhh-CCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence 445555554432 335555553 357999999999999999999999999999999998543
No 74
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.27 E-value=0.00064 Score=70.19 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=55.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K--------------------------------------------------- 64 (447)
..|.|.++++++||.|++||+|++|+...
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998531
Q ss_pred --------------------eeeEEeCCCCeEEEEEeeCCCCeeeccc--EEEEEecC
Q 013218 65 --------------------ATIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVVG 100 (447)
Q Consensus 65 --------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G~--~l~~i~~~ 100 (447)
....|+||++|+|.+.+++.|+.|..|+ +|+.|...
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence 0135999999999999999999999985 68877643
No 75
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.26 E-value=0.00056 Score=49.41 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=26.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 46999999999999999999999998654
No 76
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.11 E-value=0.001 Score=69.40 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=54.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 65 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~-------------------------------------------------- 65 (447)
.+|+|.++++++||.|++||+|++|.....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 479999999999999999999999965310
Q ss_pred ---------------------eeEEeCCCCeEEEEEeeCCCCeeeccc--EEEEEec
Q 013218 66 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVV 99 (447)
Q Consensus 66 ---------------------~~~i~ap~~G~i~~~~v~~g~~v~~G~--~l~~i~~ 99 (447)
...|+||++|+|....++.|+.|..|+ +|+.|..
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence 225999999999999999999999985 6776654
No 77
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.08 E-value=0.0014 Score=67.13 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=54.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K--------------------------------------------------- 64 (447)
..|.|.++++++||.|++||+|++++...
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 147 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD 147 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 46999999999999999999999998631
Q ss_pred ----------------------------------eeeEEeCCCCeEEEEEeeCCCCeeecc---cEEEEEecC
Q 013218 65 ----------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVG---ETLLKLVVG 100 (447)
Q Consensus 65 ----------------------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G---~~l~~i~~~ 100 (447)
....|+||++|+|..+.+..|+.|..| ++|+.|...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~ 220 (370)
T PRK11578 148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 220 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecC
Confidence 012699999999999999999999776 368877543
No 78
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.94 E-value=0.0017 Score=56.03 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=34.2
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
|.|+.+.. ++|+.|++|++++.||+.|...++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 55555544 559999999999999999999999999999999884
No 79
>PRK12784 hypothetical protein; Provisional
Probab=96.90 E-value=0.0049 Score=47.87 Aligned_cols=65 Identities=15% Similarity=0.285 Sum_probs=58.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceee-EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATI-EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~-~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
-.|+|.++++.+++.|-+-++|+-|+++.... .|.--.+|.|..+.|++||.|..+..|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 46999999999999999999999999876554 478899999999999999999999999999764
No 80
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.86 E-value=0.0034 Score=63.16 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=28.0
Q ss_pred EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.|+||++|+|..+.+..|+.|.. ++|+.|.+.
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~ 237 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDT 237 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecC
Confidence 47899999999999999999986 788888653
No 81
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.73 E-value=0.0013 Score=65.73 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=47.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------e----------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------T---------------------------- 66 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~---------------------~---------------------------- 66 (447)
..|.| +|+|++||.|++||+|+++++... .
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI 106 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence 46999 999999999999999999985432 0
Q ss_pred ------------------e----------EEeCCCCeEEE-------------------------EEeeCCCCeeecccE
Q 013218 67 ------------------I----------EITSRYKGKVA-------------------------QLLHAPGNIVKVGET 93 (447)
Q Consensus 67 ------------------~----------~i~ap~~G~i~-------------------------~~~v~~g~~v~~G~~ 93 (447)
. .|.||++|+|. ++.+.+|+.+..|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~ 186 (328)
T PF12700_consen 107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP 186 (328)
T ss_dssp STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence 0 28999999999 999999999999999
Q ss_pred EEEEecC
Q 013218 94 LLKLVVG 100 (447)
Q Consensus 94 l~~i~~~ 100 (447)
|+.|...
T Consensus 187 l~~i~~~ 193 (328)
T PF12700_consen 187 LFTIADL 193 (328)
T ss_dssp SEEEEEE
T ss_pred eeeeccC
Confidence 9998754
No 82
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.72 E-value=0.0044 Score=59.69 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=51.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+|.+.. .++.||.|++||+|+.|+. .+|.||.+|+|.-+ +++|-.|+.|.-|+.|++-.
T Consensus 172 ~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 172 DGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred CeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEECCCC
Confidence 455544 8999999999999999974 69999999999775 89999999999999998644
No 83
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.71 E-value=0.002 Score=55.73 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=49.4
Q ss_pred cccCCCCCceEEEecCCCCCCCceEEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 14 ALADLPASGIVDVPLAQTGEGIAECELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 14 ~~~~~~~~~~~~~~~p~~~~~~~~g~i~~w-~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
.-.+..+..+..+-|-+.... .-|.|+-+ +.++|+.|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 16 eWvr~e~d~~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 16 EWVRVEGDGTATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred EEEEecCCCEEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 333334445566666555543 23555555 35789999999999999999999999999999998874
No 84
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.65 E-value=0.0035 Score=48.64 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=32.2
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|.||.+|+|.++++++||.|..||+|+.++...
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 35899999999999999999999999999998755
No 85
>PRK06748 hypothetical protein; Validated
Probab=96.22 E-value=0.0076 Score=48.29 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=31.0
Q ss_pred EEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
.|.||..|+|.++++++||.|..||+|+.+++
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 58999999999999999999999999999998
No 86
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.68 E-value=0.034 Score=57.58 Aligned_cols=32 Identities=38% Similarity=0.530 Sum_probs=29.0
Q ss_pred EeCCCCeEEEEEee-CCCCeeecccEEEEEecC
Q 013218 69 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVG 100 (447)
Q Consensus 69 i~ap~~G~i~~~~v-~~g~~v~~G~~l~~i~~~ 100 (447)
|+||++|+|..+.+ ..|+.|..|++|+.|.+.
T Consensus 274 i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 274 IRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE 306 (423)
T ss_pred EECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence 89999999999876 799999999999999753
No 87
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.62 E-value=0.025 Score=43.57 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=31.8
Q ss_pred EEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.|.||..|+|.++++++|+.|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5899999999999999999999999999998755
No 88
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=95.57 E-value=0.024 Score=54.90 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=29.9
Q ss_pred EeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
|+||++|+|..+.+.+|+.|..|++|+.|.+.
T Consensus 91 i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 91 VRSPFDGYITQKSVTLGDYVAPQAELFRVADL 122 (265)
T ss_pred EECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence 69999999999999999999999999998753
No 89
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.48 E-value=0.022 Score=42.67 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=29.9
Q ss_pred EeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 33 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM 33 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 68999999999999999999999999999753
No 90
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=95.30 E-value=0.041 Score=55.94 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=30.9
Q ss_pred EeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
|+||.+|+|.+..+..|+.|.+|++|+.+.+.+
T Consensus 211 IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~ 243 (352)
T COG1566 211 IRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD 243 (352)
T ss_pred EECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence 899999999999999999999999999988754
No 91
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.30 E-value=0.059 Score=53.77 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=47.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet---~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
+=+...+++.||.|++||+|++|=. +....++.||.+|+|.-+ ...-.|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~--~~~p~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL--REYPLVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe--ecCCeecCCceEEEe
Confidence 3467788999999999999999953 345778999999999664 566788888888876
No 92
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.20 E-value=0.032 Score=46.49 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=38.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
-|.-.+-.|++||.|++||.|++.+ +-....|.|+.+|+|..|.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE 81 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence 3555778899999999999999997 4668899999999999874
No 93
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.00 E-value=0.081 Score=52.47 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=45.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet--~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
..|. .+..++.||.|++||+|++|-. .....+++||.+|+|.. ....-.|..|+.|+.|
T Consensus 226 ~~G~-~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~--~~~~~~v~~G~~l~~i 286 (287)
T cd06251 226 QGGL-LRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG--RNNLPLVNEGDALFHI 286 (287)
T ss_pred CCeE-EEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE--ecCCCccCCCCEEEEe
Confidence 3455 5579999999999999999953 12347899999999954 4566678888888765
No 94
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=94.97 E-value=0.035 Score=49.08 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=32.8
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
...|+||..|++.+++|++||.|..||+|+.|+..
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAM 104 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAM 104 (140)
T ss_pred CceEecCcceEEEEEeeccCCEEcCCCEEEEEEee
Confidence 46799999999999999999999999999999965
No 95
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.68 E-value=0.12 Score=52.09 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=46.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
+=+....++.||.|++||+|++|-. .....++.||.+|+|.-. ...-.|..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPGLVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCCccCCCCEEEEEe
Confidence 4467788999999999999999854 245678999999999654 3445577888887764
No 96
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=94.44 E-value=0.12 Score=53.03 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=45.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
.|=+.+.+++.||.|++||+|++|-. +....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRFVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCccccCCCeEEEe
Confidence 34467788999999999999999852 22333469999999965 5677788888888876
No 97
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.41 E-value=0.072 Score=46.46 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=33.6
Q ss_pred eeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 65 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 65 ~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
....|.||.+|+|.++++++||.|..|++|+.++...
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK 96 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMK 96 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence 4567999999999999999999999999999998653
No 98
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=94.26 E-value=0.07 Score=41.66 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=29.7
Q ss_pred EEeCCCCeEEEE------EeeCCCCeeecccEEEEEecCC
Q 013218 68 EITSRYKGKVAQ------LLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 68 ~i~ap~~G~i~~------~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+|++|..|...+ +++++|+.|..||+|+.++...
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K 41 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMK 41 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSS
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCc
Confidence 678888887666 9999999999999999998754
No 99
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.21 E-value=0.15 Score=59.70 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=61.3
Q ss_pred CCceEEEecCCCCCCCce----------EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeee
Q 013218 20 ASGIVDVPLAQTGEGIAE----------CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVK 89 (447)
Q Consensus 20 ~~~~~~~~~p~~~~~~~~----------g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~ 89 (447)
.+++..|++-..|+-... |+..++.++.++.+..++.....+. .....|.||..|+|.++++++||.|.
T Consensus 1019 ~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~ 1097 (1143)
T TIGR01235 1019 KGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVN 1097 (1143)
T ss_pred CCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeC
Confidence 466667777677654333 4567777888888777766555432 23356999999999999999999999
Q ss_pred cccEEEEEecCC
Q 013218 90 VGETLLKLVVGD 101 (447)
Q Consensus 90 ~G~~l~~i~~~~ 101 (447)
.||+|+.++...
T Consensus 1098 ~Gd~L~~iEamK 1109 (1143)
T TIGR01235 1098 KGDPLVVLEAMK 1109 (1143)
T ss_pred CCCEEEEEEecc
Confidence 999999999754
No 100
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.18 E-value=0.074 Score=44.01 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=24.6
Q ss_pred EeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
|+||++|+|..+.+++|+.|..|++|+.|...
T Consensus 2 i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred EECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 67788888888777888888888887777654
No 101
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=94.11 E-value=0.16 Score=51.30 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=46.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
+=+....++.||.|++||+|++|-. .....++.||.+|+|.. ....-.|..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 3356788999999999999999953 23467899999999976 4566778888888865
No 102
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.85 E-value=0.13 Score=51.69 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=44.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet---~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
++=+++.+++.||.|++||+|+.|-. .+...||+|+.+|+|..... --.+..|+.+..+.
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v~ 325 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVVG 325 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeeec
Confidence 44579999999999999999998865 47899999999999987632 12334444444443
No 103
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.78 E-value=0.11 Score=46.74 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=32.8
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
...|.||..|+|.++++++||.|..||+|+.++...
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK 119 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK 119 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence 457999999999999999999999999999998654
No 104
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.26 E-value=0.12 Score=45.97 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=35.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EeCCCCeEEEEEee
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQLLH 82 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~-i~ap~~G~i~~~~v 82 (447)
.+|..+-..+.+|+.|.+||.|+-+.|-|..+- ++||.+|+|.=+.-
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e 134 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE 134 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence 467778889999999999999999999997655 99999999976643
No 105
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.24 E-value=0.16 Score=49.29 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=37.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN 86 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~ 86 (447)
.|..-+.+|+|||.|++||+|++-- .-..+-+.||.+|+|.+|.-.+--
T Consensus 37 ~g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~RG~rR 85 (257)
T PF05896_consen 37 PGMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINRGERR 85 (257)
T ss_pred CCCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEecCCCc
Confidence 3555788999999999999999632 224566899999999998664433
No 106
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.20 E-value=0.19 Score=49.84 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=40.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEeCCCCeEEEEEeeCCCCeeecccEE
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETL 94 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet--~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l 94 (447)
+=+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+. ..-.|..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 4467788999999999999999932 2446789999999997653 33445555544
No 107
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.92 E-value=0.16 Score=51.09 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=36.7
Q ss_pred EEEEeCceeeEEeCCCC---eEEEEEeeCCCCeeecccEEEEEecC
Q 013218 58 CAVQSDKATIEITSRYK---GKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 58 ~~iet~K~~~~i~ap~~---G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+.|+.......|.++.+ |+|.+++|++||.|..|++|+.|++.
T Consensus 5 G~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 5 GRLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred ceEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 34555555667899999 99999999999999999999999864
No 108
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=92.87 E-value=0.092 Score=51.73 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=24.2
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|.++.+|+|.+++|++|+.|..||+|+.|++.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 4688999999999999999999999999999853
No 109
>PRK07051 hypothetical protein; Validated
Probab=92.85 E-value=0.17 Score=40.19 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=32.4
Q ss_pred eeEEeCCCCeEEEE-------EeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQ-------LLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~-------~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..+|.||..|++.+ +++++|+.|..|++|+.++..
T Consensus 3 ~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~ 44 (80)
T PRK07051 3 QHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVM 44 (80)
T ss_pred ccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEc
Confidence 46799999999999 999999999999999999874
No 110
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.65 E-value=0.19 Score=50.95 Aligned_cols=41 Identities=20% Similarity=0.406 Sum_probs=35.4
Q ss_pred EEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 58 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 58 ~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+.|+++ .+.|.++.+|+|.++++++||.|..||+|+.|+..
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 344443 67899999999999999999999999999999753
No 111
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.27 E-value=0.16 Score=51.12 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=32.6
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
...|.|+.+|+|.++++++||.|..||+|+.|+..
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence 57899999999999999999999999999999753
No 112
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=91.75 E-value=0.33 Score=50.74 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 39 ELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 39 ~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.|.-..++.|+.-..=+..+.|+. .-...|.++.+|+|.++++++|+.|..||+|+.|++.
T Consensus 61 ~V~v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 61 PVQAATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred ceEEEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 345555666665555556678876 4667899999999999999999999999999999763
No 113
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=91.53 E-value=0.27 Score=51.74 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=38.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEee
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v 82 (447)
.|.--+..|++||+|++||+|++-. .-....+.||.+|+|..|..
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~-~~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDK-KNPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecC-CCceEEEEcCCCeEEEEEec
Confidence 3666778999999999999999875 33678899999999999943
No 114
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=91.38 E-value=0.22 Score=49.53 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=28.2
Q ss_pred EEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 57 LCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 57 l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
-+.|+. -...+.++.+|+| ++++++|+.|..|++|+.+...
T Consensus 14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 345554 4567999999999 9999999999999999999853
No 115
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.34 E-value=0.67 Score=50.55 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=32.6
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.+|.||..|+|.+++|++||.|..||+|+.++...
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK 560 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK 560 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence 46999999999999999999999999999999764
No 116
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=91.24 E-value=0.42 Score=49.00 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=42.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 40 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 40 i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
+.-+.++.|+.-..=..-+.++.. -...|.++.+|.|.++++++|+.|..||+|+.++.
T Consensus 36 v~~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 36 YQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred eEEEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 444445555533332344455543 34589999999999999999999999999999965
No 117
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=91.18 E-value=0.44 Score=49.14 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=45.8
Q ss_pred EcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 44 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 44 ~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.++.|+....-+..+.|+.. -...|.++.+|+|.++++++|+.|+.||+|+.|++.
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~-~~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPY-EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EeEEEeccceEEEEEEEEEE-EEEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 45666655555667788755 467899999999999999999999999999999753
No 118
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=91.13 E-value=0.16 Score=49.97 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=21.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
..|.|.+++|++||.|++||+|++|+...
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 56999999999999999999999998543
No 119
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.04 E-value=0.4 Score=50.73 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=35.1
Q ss_pred EEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 60 VQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 60 iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
|..+.-...|.++..|+|.+++|++||.|..|++|+.+++..
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 333444567899999999999999999999999999997643
No 120
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=90.94 E-value=0.37 Score=47.79 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=32.1
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
...|.+|.+|+|.++++++|+.|..|++|+.+...
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 46799999999999999999999999999999753
No 121
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.81 E-value=0.39 Score=49.63 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=38.1
Q ss_pred EEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 58 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 58 ~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+.|........|.++.+|+|.+++|++||.|..|++|+.++...
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 35556677777999999999999999999999999999998653
No 122
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=90.75 E-value=4.7 Score=42.64 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=39.8
Q ss_pred CCeEEEEecCCCCC-cc----cccccCC-C---ceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHH-HH
Q 013218 358 GGTITLSNIGAIGG-KF----GAPLLNL-P---EVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATV-AK 427 (447)
Q Consensus 358 ~gtftISnlg~~G~-~~----~~pii~~-p---q~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~a-a~ 427 (447)
++||.|||||.+.. .. ..-++.. + -.+.+.++-+.- .+| -|++++++=.-+++-... -.
T Consensus 403 ~~t~evSNLG~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS~-----~~G------~L~i~~s~~~~~~~~~~~~~~ 471 (480)
T PF07247_consen 403 RSTFEVSNLGVFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVIST-----KGG------GLNISISWQEGIVEDEEMEDE 471 (480)
T ss_pred CCcEEEEeCCcccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEEc-----CCC------ceEEEEEEeCCcccccchHHH
Confidence 57999999998863 00 0111100 0 111233333321 234 388899998888886666 48
Q ss_pred HHHHHHHHh
Q 013218 428 FCNEWKQLI 436 (447)
Q Consensus 428 Fl~~l~~~L 436 (447)
|++.|++.|
T Consensus 472 ~~~~~~~~~ 480 (480)
T PF07247_consen 472 FMELFKQNL 480 (480)
T ss_pred HHHHHHhhC
Confidence 888888764
No 123
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=90.63 E-value=0.51 Score=47.43 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=40.2
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
-..+|++||.|++||+|+|-- -...+-+.||.+|+|..|+-.+-..+. +++..++.
T Consensus 41 p~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~RG~KRvLq--sVVI~~~g 96 (447)
T COG1726 41 PSMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHRGEKRVLQ--SVVIKVEG 96 (447)
T ss_pred CcceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeecccceeee--eEEEEecC
Confidence 456899999999999999742 225667999999999998655443333 45555543
No 124
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.44 E-value=0.42 Score=49.92 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=33.6
Q ss_pred CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 63 DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 63 ~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
......|.++.+|+|.+++|++|+.|..|++|+.|+..
T Consensus 55 ~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 55 SSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred CCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 33445899999999999999999999999999999764
No 125
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=90.38 E-value=0.59 Score=48.21 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=44.5
Q ss_pred EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 43 WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 43 w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..++.++.-..-...+.|+.. -...|.++.+|+|.++++++||.|..||+|+.|++.
T Consensus 41 ~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 41 VTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 345555544444556677754 456899999999999999999999999999999753
No 126
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=90.21 E-value=0.31 Score=48.81 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=31.7
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|.++.+|.|.++++++||.|..||+|+.++..
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence 5699999999999999999999999999999863
No 127
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=89.90 E-value=6.9 Score=40.86 Aligned_cols=165 Identities=12% Similarity=0.128 Sum_probs=87.6
Q ss_pred EEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCC----
Q 013218 242 HYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH---- 317 (447)
Q Consensus 242 ~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~---- 317 (447)
+....+++..+.+..+.. +.|++++++-|++.+|.++ ++.. + . .....+.+++.|+...
T Consensus 231 ~~~~~~~~~~l~~~a~~~---------g~T~ndvllaa~~~al~~~--~~~~--~---~-~~~~~i~~~~pv~~R~~~~~ 293 (446)
T TIGR02946 231 FAAQSLPLADVKAVAKAF---------GVTINDVVLAAVAGALRRY--LEER--G---E-LPDDPLVAMVPVSLRPMEDD 293 (446)
T ss_pred EEeeccCHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHH--HHHc--C---C-CCCCceEEEEeeeccccccC
Confidence 345567777776665553 8899999999999999875 2211 1 1 1123466777776321
Q ss_pred -------CeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCC-------------CCCC-------------CCCCCeEEEE
Q 013218 318 -------GLAVPNIKNVQSLSILEITKELSRLQQLAKDNE-------------LNPA-------------DNSGGTITLS 364 (447)
Q Consensus 318 -------Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~-------------l~~~-------------~~~~gtftIS 364 (447)
|.+...+.- ...+..+...++++....+|+.. +.|. ....-+++||
T Consensus 294 ~~~~N~~~~~~~~l~~-~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~S 372 (446)
T TIGR02946 294 SEGGNQVSAVLVPLPT-GIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVIS 372 (446)
T ss_pred CCCCCEEEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEe
Confidence 122222221 22334444455555444444321 0010 0112478999
Q ss_pred ecCCCCC---------cccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHH
Q 013218 365 NIGAIGG---------KFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQL 435 (447)
Q Consensus 365 nlg~~G~---------~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~ 435 (447)
|++.... ..+.++..+.....++++-... +| .|.+++++|-.++.. ..+|.+.|++.
T Consensus 373 Nvpg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~sy------~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~ 438 (446)
T TIGR02946 373 NVPGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTSY------NG------QLDFGLLADRDAVPD--PQELADALEAA 438 (446)
T ss_pred CCCCCCcccEecCeeEEEeeccccccCCCeEEEEEEec------CC------eEEEEEeechhhCCC--HHHHHHHHHHH
Confidence 9975421 1222222211112233332221 33 488999999988874 77788877777
Q ss_pred hhC
Q 013218 436 IEN 438 (447)
Q Consensus 436 Le~ 438 (447)
|++
T Consensus 439 l~~ 441 (446)
T TIGR02946 439 LEE 441 (446)
T ss_pred HHH
Confidence 764
No 128
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=89.89 E-value=0.42 Score=49.53 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.9
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
...|.++.+|+|.+++|++||.|+.||+|+.|++.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence 67899999999999999999999999999999864
No 129
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=89.68 E-value=0.42 Score=48.12 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.5
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
...|.++.+|+|.++++++||.|..|++|+.++..
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 56899999999999999999999999999999753
No 130
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=89.55 E-value=0.52 Score=49.73 Aligned_cols=44 Identities=30% Similarity=0.321 Sum_probs=36.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEee
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v 82 (447)
|.--+..|++||+|++||+|++-.. -....+.||.+|+|..|..
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~-~~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKK-NPGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEcc
Confidence 5556789999999999999996642 2568899999999999943
No 131
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=89.48 E-value=0.53 Score=42.07 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=37.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
...++. =++|-.|.+||.++.+|+-|+..+|.+|.+|.|.+|.
T Consensus 82 vv~veL-Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiN 124 (172)
T KOG3373|consen 82 VVYVEL-PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEIN 124 (172)
T ss_pred eEEEEc-CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEec
Confidence 333443 5789999999999999999999999999999999985
No 132
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=88.29 E-value=0.45 Score=37.39 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=21.9
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
++.+.=+.++++.||.|++||+|++|=++.
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 444556789999999999999999986554
No 133
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=88.25 E-value=1.2 Score=40.71 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=48.4
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218 36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 80 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~~------------------------------- 80 (447)
-.|+++.+ -++-|.|=. ||-+++.=++ ..|.||++|+|..+
T Consensus 27 ~~G~vi~L-~~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~ 102 (169)
T PRK09439 27 LSGEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 102 (169)
T ss_pred CCeEEEEh-HHCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCC
Confidence 56888877 556665554 8888887765 68899999999877
Q ss_pred ----eeCCCCeeecccEEEEEec
Q 013218 81 ----LHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 81 ----~v~~g~~v~~G~~l~~i~~ 99 (447)
++++||.|..||+|+.++-
T Consensus 103 gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 103 GFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred ceEEEecCCCEEeCCCEEEEEcH
Confidence 6889999999999999874
No 134
>PF13437 HlyD_3: HlyD family secretion protein
Probab=88.23 E-value=0.91 Score=37.36 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=25.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQS 62 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet 62 (447)
.+|.|..+.+++|+.|..|++|++|..
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 579999999999999999999999974
No 135
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=87.92 E-value=0.66 Score=45.02 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=32.0
Q ss_pred eEEeCCCCeEEEE-------EeeCCCCeeecccEEEEEecCCC
Q 013218 67 IEITSRYKGKVAQ-------LLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 67 ~~i~ap~~G~i~~-------~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
..|.||..|++.+ +++++||.|..||+|+.|+....
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKm 240 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKL 240 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeece
Confidence 3489999999999 59999999999999999997643
No 136
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=87.58 E-value=1.8 Score=43.00 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe--CceeeEEeCCCCeEEEEE
Q 013218 39 ELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQL 80 (447)
Q Consensus 39 ~i~~w~v~~Gd~V~~g~~l~~iet--~K~~~~i~ap~~G~i~~~ 80 (447)
=+.+..++.||.|++||+|++|-. .....++.||.+|+|.-.
T Consensus 240 Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 240 GLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 356677888888888888888841 113445788888888665
No 137
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=87.54 E-value=0.74 Score=47.75 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=37.1
Q ss_pred eEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 56 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 56 ~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..+.|+. .-..+|.+..+|+|.++++++||.|..||+|+.|++.
T Consensus 56 ~~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 56 LPGRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 4455653 4467899999999999999999999999999999753
No 138
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=87.52 E-value=1.6 Score=47.84 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=32.9
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
...|.||.+|+|.++.+++|+.|..||+|+.++...
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamK 557 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMK 557 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence 356999999999999999999999999999998654
No 139
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=87.45 E-value=1.2 Score=38.94 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=41.6
Q ss_pred ceEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218 36 AECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 80 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V----~~g~~l~~iet~K~~~~i~ap~~G~i~~~------------------------------- 80 (447)
..|+++.+ -+.-|.+ --|+.++..=++ ..|.||++|+|..+
T Consensus 9 v~G~vi~l-~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~ 84 (132)
T PF00358_consen 9 VSGKVIPL-EEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGE 84 (132)
T ss_dssp SSEEEEEG-GGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTT
T ss_pred CCcEEEEh-hhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCc
Confidence 34666654 3455555 336778776554 36889999988887
Q ss_pred ----eeCCCCeeecccEEEEEec
Q 013218 81 ----LHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 81 ----~v~~g~~v~~G~~l~~i~~ 99 (447)
++++||+|..||+|+.+..
T Consensus 85 gF~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 85 GFETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp TEEESS-TTSEE-TTEEEEEE-H
T ss_pred ceEEEEeCCCEEECCCEEEEEcH
Confidence 7779999999999999874
No 140
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=87.42 E-value=0.57 Score=42.17 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=24.5
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEE
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
-.+|+|.+|+++.||.|..||+|++|+
T Consensus 130 ~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 130 EVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 357899999999999999999999985
No 141
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=87.35 E-value=0.6 Score=49.12 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=36.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
|.--+..|++||+|++||+|++.+ ......+.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 444568899999999999999984 4468899999999999873
No 142
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=87.31 E-value=1.2 Score=46.52 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=37.3
Q ss_pred CeEEEEEeCc-eeeEEeCCCCeEEEEEe-eCCCCeeecccEEEEEecC
Q 013218 55 QPLCAVQSDK-ATIEITSRYKGKVAQLL-HAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 55 ~~l~~iet~K-~~~~i~ap~~G~i~~~~-v~~g~~v~~G~~l~~i~~~ 100 (447)
+..+.|+.+. ....|.++.+|.|.+++ +.+||.|..||+|+.|...
T Consensus 111 ~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp 158 (409)
T PRK09783 111 TFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 158 (409)
T ss_pred EEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence 3445665443 34579999999999998 9999999999999999854
No 143
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=87.28 E-value=1.6 Score=37.72 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.9
Q ss_pred eeCCCCeeecccEEEEEec
Q 013218 81 LHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 81 ~v~~g~~v~~G~~l~~i~~ 99 (447)
++++||.|..||+|+.+..
T Consensus 85 ~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 85 HVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 6889999999999999874
No 144
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=86.97 E-value=0.69 Score=41.61 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.6
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEE
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
-.+|+|.+|+++.|+.|..||+|++|+
T Consensus 129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 129 DKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 358999999999999999999999884
No 145
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=86.55 E-value=1.8 Score=37.32 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.5
Q ss_pred EeeCCCCeeecccEEEEEec
Q 013218 80 LLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 80 ~~v~~g~~v~~G~~l~~i~~ 99 (447)
.++++||+|..||+|+.+..
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 37889999999999999874
No 146
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=85.99 E-value=1.6 Score=39.20 Aligned_cols=44 Identities=25% Similarity=0.349 Sum_probs=33.0
Q ss_pred CCeEEEEEeCceeeEEeCCCCeEEEEE-----------------------------------eeCCCCeeecccEEEEEe
Q 013218 54 FQPLCAVQSDKATIEITSRYKGKVAQL-----------------------------------LHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 54 g~~l~~iet~K~~~~i~ap~~G~i~~~-----------------------------------~v~~g~~v~~G~~l~~i~ 98 (447)
||-++..=++ ..+.||++|+|..+ ++++||.|..||+|..+.
T Consensus 33 GdGiAI~P~~---g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLiHiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 33 GDGVAIKPSE---GEVVAPVDGTVVLIFPTKHAIGIETDEGVEILIHIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred cCcEEEecCC---CeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEEEeceeeEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence 5666655443 56777777776665 888999999999999987
Q ss_pred cC
Q 013218 99 VG 100 (447)
Q Consensus 99 ~~ 100 (447)
-+
T Consensus 110 l~ 111 (156)
T COG2190 110 LD 111 (156)
T ss_pred HH
Confidence 43
No 147
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.30 E-value=2 Score=37.38 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=39.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EeCCCCeEEEEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQL 80 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~-i~ap~~G~i~~~ 80 (447)
.||-++..-+..|+.|.+||+++-+.|-|..+- +++|.+|++.-+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 578888899999999999999999999997765 899999998655
No 148
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=85.27 E-value=1.8 Score=48.26 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=35.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
|.--+..|++||+|.+||+|++-. .-....|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 444668899999999999999763 3367889999999999873
No 149
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=85.17 E-value=0.96 Score=47.74 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=26.5
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
..+|+|.+|++++||.|..|++|++|+.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 36899999999999999999999999854
No 150
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=85.04 E-value=2.1 Score=42.15 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=46.8
Q ss_pred EEEEEEcCCCCeecCCCeE--EEEE-eC-ceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 39 ELLKWFVKEGDEIEEFQPL--CAVQ-SD-KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 39 ~i~~w~v~~Gd~V~~g~~l--~~ie-t~-K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
=+....++.||.|++||+| .++- .. ....++.||.+|+| +...+.-.|..|+.|+.+.
T Consensus 229 G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 229 GLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA 290 (292)
T ss_dssp EEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred EEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence 3568999999999999999 5543 22 23458999999999 4568888999999998875
No 151
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=84.97 E-value=1.2 Score=48.65 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=33.6
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
...|.||..|.|.+++|++||.|..||+|+.++...-
T Consensus 517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKm 553 (582)
T TIGR01108 517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKM 553 (582)
T ss_pred CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence 3579999999999999999999999999999997643
No 152
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=84.83 E-value=2.2 Score=39.61 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=41.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEE
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 95 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~ 95 (447)
+.|.. .+++|+.+++||.+.-++-. .++++--|.+ .++.+++|+.|..|+.|.
T Consensus 130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 34444 36899999999999999966 5566666665 377899999999999654
No 153
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=84.81 E-value=4.2 Score=41.12 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=26.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
..|+|.+++|++||+|+.|+.|+.|++.
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecCC
Confidence 5799999999999999999999999865
No 154
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.36 E-value=0.91 Score=48.00 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=26.9
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSDKA 65 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~ 65 (447)
...|.|.+++|++||.|++||+|+.++....
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 3569999999999999999999999975443
No 155
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=82.96 E-value=1.6 Score=47.75 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.8
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
...|.||..|.|.++++++||.|..||+|+.++...
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK 559 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK 559 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence 347999999999999999999999999999998654
No 156
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=82.84 E-value=2.9 Score=39.40 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=41.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccE-EEE
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET-LLK 96 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~-l~~ 96 (447)
+.|+.| +++|+.+++||.+..++-. .++++--|.+ .++.|++||+|..|+. |++
T Consensus 150 r~I~~~-~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVCY-VKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred cEEEEe-CCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 455544 6899999999999999966 4566666655 2789999999999984 444
No 157
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=82.61 E-value=16 Score=34.80 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=26.9
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhCHH
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIENPE 440 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~ 440 (447)
..+-+.+||-++||.-...|+++|.+++++..
T Consensus 129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~ 160 (301)
T PF00668_consen 129 YFLLISFHHIICDGWSLNILLRELLQAYAGLS 160 (301)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccccccccccchhhhhhhHHhhhccc
Confidence 56788999999999999999999999888765
No 158
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=82.21 E-value=3.6 Score=40.76 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=37.0
Q ss_pred CCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 53 EFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 53 ~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
.-.....++. .....+.++..|.|.++++++||.|..|++|+.++.
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 3344455554 334478888999999999999999999999999986
No 159
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=82.11 E-value=1.8 Score=45.27 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=30.4
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
..|+||++|+|..+.+.+|+.|..|++|+.|..
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~ 286 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEV 286 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence 359999999999999999999999999999954
No 160
>PRK12999 pyruvate carboxylase; Reviewed
Probab=82.03 E-value=5.1 Score=47.31 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.4
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|.||..|+|.++++++||.|..||+|+.++...
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamK 1111 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMK 1111 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence 56999999999999999999999999999998654
No 161
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=82.01 E-value=2.4 Score=42.66 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=26.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
.+|+|.++++++||.|..|++|+.|+.+.
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 57999999999999999999999998654
No 162
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=81.63 E-value=1.3 Score=35.66 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=18.4
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 013218 40 LLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 40 i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
=++|++++|+.|++||+|++++
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEE
Confidence 4679999999999999999997
No 163
>PRK12784 hypothetical protein; Provisional
Probab=81.36 E-value=2.6 Score=33.01 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=32.4
Q ss_pred EEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
+|.||+-|++.++++.+++.|-.=++|+.|+..+.
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg 41 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG 41 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence 58999999999999999999999999999987654
No 164
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=81.07 E-value=1.9 Score=46.08 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=31.1
Q ss_pred EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.+.||..|+|..+.|++|++|..||+|+.++..
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAM 609 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAM 609 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeEeh
Confidence 489999999999999999999999999999864
No 165
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=81.01 E-value=8 Score=43.21 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=30.3
Q ss_pred EeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
|-||..|+|.++.|++|+.|..||+|+.++..
T Consensus 1082 igApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAM 1113 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAM 1113 (1149)
T ss_pred cCCCCCCceEEEEEccCCeecCCCeeeehhhh
Confidence 88999999999999999999999999999864
No 166
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=81.00 E-value=1.6 Score=45.56 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=27.9
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
-..|.|.+|++++||.|..||+|++|+++..
T Consensus 14 ~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa 44 (404)
T COG0508 14 MTEGTIVEWLKKVGDKVKEGDVLVEVETDKA 44 (404)
T ss_pred cceEEEEEEecCCCCeecCCCeeEEEEcCce
Confidence 3589999999999999999999999997654
No 167
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=79.67 E-value=3.5 Score=38.57 Aligned_cols=59 Identities=22% Similarity=0.196 Sum_probs=43.9
Q ss_pred ceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEE
Q 013218 36 AECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 96 (447)
Q Consensus 36 ~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~ 96 (447)
.-|.|+-+.. ++|+.|++||.+..++- -.++.+--|.+-.. ++.+++|+.|..|+.|++
T Consensus 143 ~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 143 LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 4456666644 69999999999999986 44444444444333 889999999999999874
No 168
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=79.52 E-value=3.1 Score=31.79 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=26.1
Q ss_pred CCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 73 YKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 73 ~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.+|++.++++++|+.|..|++|+.++...
T Consensus 12 ~~g~~~~~~v~~G~~v~~g~~l~~ie~~k 40 (73)
T cd06663 12 GDGTVVKWLKKVGDKVKKGDVLAEIEAMK 40 (73)
T ss_pred cCEEEEEEEcCCcCEECCCCEEEEEEeCC
Confidence 47999999999999999999999997654
No 169
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=79.38 E-value=1.6 Score=46.21 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=36.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
|.=....|++||.|.+||+|.+=+- ....+.||.+|+|.+|.
T Consensus 42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 3335778999999999999998864 88899999999999996
No 170
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=78.97 E-value=2.4 Score=50.22 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=32.7
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
...|.||..|+|.++++++||.|+.||+|+.++...
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK 1167 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMK 1167 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecC
Confidence 445999999999999999999999999999998654
No 171
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=78.29 E-value=3 Score=42.56 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=32.4
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.+.|.+..+|+|.++.|..++.|..|++|+.|++.+
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHH
Confidence 346899999999999999999999999999998643
No 172
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=77.90 E-value=2.5 Score=44.15 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=26.4
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
..+|+|.++++++||.|..|++|++|+..
T Consensus 93 p~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 93 PASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 36899999999999999999999999854
No 173
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=77.57 E-value=4.8 Score=36.17 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
+|+--+-++++||.|++||+|+++.-+.
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~ 112 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDL 112 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHH
Confidence 4777889999999999999999998665
No 174
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=76.78 E-value=2.3 Score=42.19 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=25.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQS 62 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet 62 (447)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 579999999999999999999999986
No 175
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=75.91 E-value=3.4 Score=43.14 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=27.2
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
..+|+|.++++++||.|..|++|++|+.+.
T Consensus 51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 368999999999999999999999998654
No 176
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=75.87 E-value=3.4 Score=43.05 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=27.1
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 34 GIAECELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 34 ~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
+..+|+|.+|++++||.|..|++|++|+.+
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 346899999999999999999999999865
No 177
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=75.11 E-value=3.5 Score=30.18 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAV 60 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~i 60 (447)
..|++.++++++|+.+..|++|++|
T Consensus 50 ~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 50 AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4688999999999999999999875
No 178
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=74.08 E-value=2.8 Score=36.22 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
+|+--++++++||+|++||+|+++.-+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 466689999999999999999999643
No 179
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=73.53 E-value=2.9 Score=36.05 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
+|+--++++++||+|++||+|+++.-+
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 455678999999999999999999643
No 180
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=73.13 E-value=4.5 Score=42.37 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=28.2
Q ss_pred CCCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 33 EGIAECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 33 ~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
++..+|+|.+|++++||.|..|++|++|+.++
T Consensus 45 ~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 45 TSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred ecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 34578999999999999999999999998654
No 181
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=72.59 E-value=9.9 Score=37.27 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 39 ELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 39 ~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
.|..|. .+|+.|++||.+..++-. .++.+--|. |.+ ++.++.|+.|..|+.|+.|
T Consensus 211 ~i~~~~-~~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTYE-YENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred ceeeec-cCCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCEEEcchhhccC
Confidence 344553 459999999999999975 444444343 333 6789999999999999754
No 182
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=71.49 E-value=8.8 Score=42.44 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=45.2
Q ss_pred ceEEEEEEEcCCCCeec----CCCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218 36 AECELLKWFVKEGDEIE----EFQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 80 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~----~g~~l~~iet~K~~~~i~ap~~G~i~~~------------------------------- 80 (447)
.+|+++... ++-|.|= -||-+++.=++ ..|.||++|+|..+
T Consensus 505 ~~G~vi~l~-~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~ 580 (648)
T PRK10255 505 ITGDVVALD-QVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGK 580 (648)
T ss_pred CCcEEEEcc-cCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCC
Confidence 356666653 3334332 28888877765 58999999999877
Q ss_pred ----eeCCCCeeecccEEEEEecC
Q 013218 81 ----LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 81 ----~v~~g~~v~~G~~l~~i~~~ 100 (447)
+|++||.|+.||+|++++-+
T Consensus 581 gF~~~Vk~Gd~V~~G~~l~~~D~~ 604 (648)
T PRK10255 581 GFKRLVEEGAQVSAGQPILEMDLD 604 (648)
T ss_pred CceEEecCCCEEcCCCEEEEEcHH
Confidence 68899999999999998753
No 183
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=71.08 E-value=8 Score=42.61 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=48.6
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218 36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 80 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~~------------------------------- 80 (447)
-+|+++.. -++-|.|=. ||-++..=++ ..|.||++|+|..+
T Consensus 485 ~~G~v~~L-~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~ 560 (627)
T PRK09824 485 MTGEVVPL-EQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGK 560 (627)
T ss_pred cceEEeeH-HHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCC
Confidence 56887776 466676655 8888877655 58999999999876
Q ss_pred ----eeCCCCeeecccEEEEEecC
Q 013218 81 ----LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 81 ----~v~~g~~v~~G~~l~~i~~~ 100 (447)
++++||+|+.||+|.+++-+
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEcHH
Confidence 77799999999999999753
No 184
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=70.84 E-value=5.7 Score=38.55 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.8
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
.-|+||.+|++.. .++-||.|..||+|+.+..
T Consensus 165 r~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 165 RVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred EEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 4499999999976 7999999999999999964
No 185
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=70.66 E-value=7.2 Score=35.62 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
+|+--+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 4666899999999999999999997543
No 186
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=70.15 E-value=9.9 Score=41.84 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=47.6
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218 36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 80 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~~------------------------------- 80 (447)
-+|+++.. -++-|.|=. ||-+++.=++ ..|.||++|+|..+
T Consensus 469 ~~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~ 544 (610)
T TIGR01995 469 VAGEMLPL-NEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGE 544 (610)
T ss_pred cceEEeeH-hhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCC
Confidence 46777776 556666655 7888876554 58999999998877
Q ss_pred ----eeCCCCeeecccEEEEEecC
Q 013218 81 ----LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 81 ----~v~~g~~v~~G~~l~~i~~~ 100 (447)
++++||+|+.||+|++++.+
T Consensus 545 gF~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 545 GFEILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred CeEEEecCcCEEcCCCEEEEecHH
Confidence 78899999999999998753
No 187
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=69.44 E-value=3.2 Score=36.31 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
+|+--++++++||+|++||+|+++.-++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 4566899999999999999999996443
No 188
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=67.30 E-value=7.1 Score=41.13 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=26.5
Q ss_pred ceEEEEEEEcCCCCe-ecCCCeEEEEEeCc
Q 013218 36 AECELLKWFVKEGDE-IEEFQPLCAVQSDK 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~-V~~g~~l~~iet~K 64 (447)
.+|+|.+|++++||. |..|++|++|+.+.
T Consensus 49 ~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 579999999999999 99999999998654
No 189
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=67.29 E-value=6.1 Score=43.47 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=37.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-------EeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-------ITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~-------i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
+|+--+.+|++||+|++||+|+++.-++..-. +--.-......+....+..+..|+.+..+
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 56677999999999999999999975542211 11011111122334445567777766543
No 190
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=65.58 E-value=9.9 Score=47.87 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.3
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
..++|++|+.|++||+|++..
T Consensus 2422 a~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2422 AKLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred cEEEecCCCEecCCCEEEEEc
Confidence 367899999999999999873
No 191
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=65.33 E-value=17 Score=43.31 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=57.7
Q ss_pred ceEEEecCCCCCCCc----eEEEEEEEcC---CCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEE
Q 013218 22 GIVDVPLAQTGEGIA----ECELLKWFVK---EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETL 94 (447)
Q Consensus 22 ~~~~~~~p~~~~~~~----~g~i~~w~v~---~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l 94 (447)
.-.++.+-+|+.+-- .|+.-.+..+ .|-.+..|--.|..|.+.--..++||..|.+.+.+|+.|+.|.+|++-
T Consensus 634 s~~~v~v~~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~Y 713 (2196)
T KOG0368|consen 634 SEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPY 713 (2196)
T ss_pred cEEEEEEEEecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCee
Confidence 445666777766410 1222222222 355667788888888888888899999999999999999999999999
Q ss_pred EEEecC
Q 013218 95 LKLVVG 100 (447)
Q Consensus 95 ~~i~~~ 100 (447)
|+++..
T Consensus 714 AeiEvM 719 (2196)
T KOG0368|consen 714 AEIEVM 719 (2196)
T ss_pred eehehh
Confidence 988754
No 192
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=63.07 E-value=9.6 Score=37.23 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=40.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
|.|+ | ..+|+.|++||.+..++-. .++.+--|.+-.-....+.+|+.|..|+.|+.+
T Consensus 202 g~I~-~-~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 202 NSIE-L-THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred eEEE-E-ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 4444 3 4579999999999999877 556555554433234567889999999988753
No 193
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=62.46 E-value=6.4 Score=43.00 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=30.4
Q ss_pred EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.|-||..|+|.+|.|++|+.|..||+|+.+...
T Consensus 1108 ~igAPMpG~vieikvk~G~kV~Kgqpl~VLSAM 1140 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAM 1140 (1176)
T ss_pred cccCCCCCceEEEEEecCceecCCCceEeeecc
Confidence 389999999999999999999999999998754
No 194
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=61.42 E-value=9.1 Score=42.21 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
+|+--+.+|++||+|++||+|+++.-++
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4566799999999999999999997554
No 195
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=59.93 E-value=11 Score=40.02 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=26.4
Q ss_pred CCceEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 013218 34 GIAECELLKWFVKEGD-EIEEFQPLCAVQSD 63 (447)
Q Consensus 34 ~~~~g~i~~w~v~~Gd-~V~~g~~l~~iet~ 63 (447)
+..+|+|.+|++++|+ .|+.|++|++|+.+
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 4468999999999995 79999999999754
No 196
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=58.70 E-value=16 Score=36.33 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=31.1
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
..-++||.+|.+. ..++.|+.|..||+|+.|.+...
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~~V~~Gq~lg~I~dp~g 266 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGDTIPAGQPLGRVVDLYG 266 (293)
T ss_pred eEEEecCCCeEEE-EecCCCCEecCCCEEEEEECCCC
Confidence 5579999999994 56999999999999999987544
No 197
>PRK09294 acyltransferase PapA5; Provisional
Probab=58.53 E-value=2.2e+02 Score=29.30 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=23.3
Q ss_pred eeee---chHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcC
Q 013218 245 EEIN---CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKY 287 (447)
Q Consensus 245 ~~vD---vt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~ 287 (447)
..++ ...|.++.++. ++|++.+++-|++.++.+.
T Consensus 211 ~~l~~~~~~~L~~~a~~~---------~~t~~~~l~Aa~~~~l~r~ 247 (416)
T PRK09294 211 CRLSKAQTSSLAAFGRRH---------RLTVNALVSAAILLAEWQL 247 (416)
T ss_pred EEeCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHh
Confidence 4555 44555555442 7899999999988887654
No 198
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=58.21 E-value=17 Score=38.80 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=36.2
Q ss_pred EEEEeCceeeEEeCCCCeEEEEE------------------------eeCCCCeeecccEEEEEecC
Q 013218 58 CAVQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 58 ~~iet~K~~~~i~ap~~G~i~~~------------------------~v~~g~~v~~G~~l~~i~~~ 100 (447)
..+...+-..+|.|+.+|+|..+ +++.||.|..|++|+.|...
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 33455677889999999999887 77899999999999999853
No 199
>COG3608 Predicted deacylase [General function prediction only]
Probab=57.94 E-value=18 Score=36.61 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=33.5
Q ss_pred eEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 56 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 56 ~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.....+++ .--+.||.+|.| +.+++.||.|+.|++|+.+.+.
T Consensus 248 ~~~~~~~~--~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~ 289 (331)
T COG3608 248 KGLALPSS--DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDP 289 (331)
T ss_pred ceeecccc--cceeecCCCceE-EEeecCCCcccCCCeEEEEecC
Confidence 33344444 445999999999 6789999999999999999874
No 200
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=57.81 E-value=42 Score=34.46 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=39.4
Q ss_pred EcCCCCeecCCCeEEEEE-eCceeeEEeCC--CCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 44 FVKEGDEIEEFQPLCAVQ-SDKATIEITSR--YKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 44 ~v~~Gd~V~~g~~l~~ie-t~K~~~~i~ap--~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
.+++||.|..||.+..|. +.-.++-|-.| ..|+|..+ ..+|+ -++.+.++.++.
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~-~~~~~~~~~~~~ 110 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD-YTVDDVILEVEF 110 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC-eeEEEEEEEEEe
Confidence 468999999999999886 33355555444 59999775 66777 345578888875
No 201
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.45 E-value=21 Score=31.13 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=28.6
Q ss_pred eCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 70 TSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 70 ~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
.-|..|++....+..|.++..|++++.+.+-..
T Consensus 95 ~iPvEGYvVtpIaDvG~RvrkGd~~AAvttRkG 127 (161)
T COG4072 95 LIPVEGYVVTPIADVGNRVRKGDPFAAVTTRKG 127 (161)
T ss_pred EEecCcEEEEEeecccchhcCCCceeEEEeccc
Confidence 338899999999999999999999999876543
No 202
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=56.53 E-value=12 Score=35.93 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=36.7
Q ss_pred CCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEE
Q 013218 48 GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 96 (447)
Q Consensus 48 Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~ 96 (447)
|+.|++||.+..++-. .++.+--|.+-+-.+..+.+|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999864 55555555432333678999999999999863
No 203
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=56.36 E-value=15 Score=36.70 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=30.0
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..-+.||.+|.+.. .++.|+.|..||+|++|...
T Consensus 229 ~~~v~A~~~Gl~~~-~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIFVP-AKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEEEE-CcCCCCEECCCCEEEEEeCC
Confidence 56799999999955 69999999999999999864
No 204
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=56.03 E-value=15 Score=35.96 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=33.4
Q ss_pred cCCCCeecC-CCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEE
Q 013218 45 VKEGDEIEE-FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 96 (447)
Q Consensus 45 v~~Gd~V~~-g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~ 96 (447)
+..|+.|.+ |++|++.. ..++.+|++|.+ ++-....+.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeee
Confidence 566889988 99999853 378999999966 4566666667776654
No 205
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=55.04 E-value=19 Score=29.85 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 47 EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 47 ~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
......++.+|-.+..-+-..---....|.-.+..|++||.|..||.|+...
T Consensus 11 ~~K~~s~~~~i~~~~~p~~v~ipL~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~ 62 (101)
T PF13375_consen 11 EHKELSKDKPIEEAPLPKKVVIPLRQHIGAPAEPVVKVGDKVKKGQLIAEAE 62 (101)
T ss_pred CccccccCCCeEECCCcCEEEEECcccCCCcceEEEcCCCEEcCCCEEEecC
Confidence 3344556666666653332222234456777788999999999999999875
No 206
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=54.92 E-value=25 Score=34.71 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=31.0
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
...++||.+|.+.. .++.||.|..||+|+.|.....
T Consensus 219 ~~~v~A~~~G~~~~-~~~~Gd~V~~G~~ig~i~d~~~ 254 (287)
T cd06251 219 SVWVRAPQGGLLRS-LVKLGDKVKKGQLLATITDPFG 254 (287)
T ss_pred CeEEecCCCeEEEE-ecCCCCEECCCCEEEEEECCCC
Confidence 35799999999965 7999999999999999986543
No 207
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=54.73 E-value=19 Score=37.19 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=38.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEE-------eeCCCCeeecccEEEE
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL-------LHAPGNIVKVGETLLK 96 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~-------~v~~g~~v~~G~~l~~ 96 (447)
+|+-..+.+.|-... +...++.--+|-|..+|+|.++ .|++||.|..||+|..
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 677777777665433 3333445567889999999988 5668999999999874
No 208
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=54.72 E-value=20 Score=36.75 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=30.2
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
.-++||.+|.+. ..++.||.|..||+|+.|.....
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd~V~~G~~lg~I~d~~g 324 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGDWVEAGDVLAEILDPLG 324 (359)
T ss_pred EEEeCCCCeEEE-EecCCCCEecCCCEEEEEECCCC
Confidence 459999999995 56999999999999999986544
No 209
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=54.59 E-value=33 Score=40.95 Aligned_cols=57 Identities=28% Similarity=0.409 Sum_probs=45.1
Q ss_pred EEEcCCCCeecCCCeEEEEEeC-------ceeeEEeCCCCeEEE------------------------------------
Q 013218 42 KWFVKEGDEIEEFQPLCAVQSD-------KATIEITSRYKGKVA------------------------------------ 78 (447)
Q Consensus 42 ~w~v~~Gd~V~~g~~l~~iet~-------K~~~~i~ap~~G~i~------------------------------------ 78 (447)
-++|+.|+.|+++|+|+|+-+. |+.-.|.|+.+|.|.
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~fst~V~h~~rtrhGNva~ll~ktGhLWILSG~vynl 483 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRFADLIPEEKTDRQGNTTRKAQRGGLLWVLSGDVYNL 483 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEECCCccccccccCCceeEEeccCcEEEEEeCCeEee
Confidence 3689999999999999999863 456679999999652
Q ss_pred ----EEeeCCCCeeecccEEEEEe
Q 013218 79 ----QLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 79 ----~~~v~~g~~v~~G~~l~~i~ 98 (447)
.++++.||.|..+++|++..
T Consensus 484 p~~S~LfvKdqDqV~~~sVLAEtk 507 (1331)
T PRK02597 484 PPGAEPVVSNGDRVEEGDVLAETK 507 (1331)
T ss_pred CCCceEEEeCCCEEccCceEEEEe
Confidence 12667888888888888654
No 210
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=54.59 E-value=17 Score=37.96 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=27.0
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
..+|+|.++++++|+.|..|++|++|+.+.
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 367999999999999999999999998654
No 211
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=53.53 E-value=10 Score=36.94 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.6
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
--+..++-|...+.+|+|||+|..||+|++=
T Consensus 30 al~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~d 60 (257)
T PF05896_consen 30 ALLPDDFPGMKPKMLVKEGDRVKAGQPLFED 60 (257)
T ss_pred EEcCcccCCCCccEEeccCCEEeCCCeeEee
Confidence 3467889999999999999999999999864
No 212
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=52.92 E-value=18 Score=35.67 Aligned_cols=37 Identities=19% Similarity=0.034 Sum_probs=31.0
Q ss_pred ceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 64 KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 64 K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
....-++||.+|.+. ..++.|+.|..||+|+.|.+.-
T Consensus 221 ~~~~~v~Ap~~G~~~-~~~~~G~~V~~G~~lg~i~dp~ 257 (288)
T cd06254 221 DDVYYVTSPASGLWY-PFVKAGDTVQKGALLGYVTDYF 257 (288)
T ss_pred cCCEEEecCCCeEEE-EecCCCCEecCCCEEEEEECCC
Confidence 345678999999995 5689999999999999997644
No 213
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=52.15 E-value=15 Score=36.23 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=14.7
Q ss_pred CcceEEEEeeeechHHHHHHHHh
Q 013218 237 KIPHFHYVEEINCDALVKLKASF 259 (447)
Q Consensus 237 ~iP~~~~~~~vDvt~l~~~~k~~ 259 (447)
.+|+ ....||.++.+.++.+.+
T Consensus 184 ~~~~-~~kIEVEvesle~~~eAl 205 (280)
T COG0157 184 AAPF-TKKIEVEVESLEEAEEAL 205 (280)
T ss_pred hCCC-CceEEEEcCCHHHHHHHH
Confidence 3554 445688888887777665
No 214
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=51.45 E-value=20 Score=37.10 Aligned_cols=31 Identities=19% Similarity=0.549 Sum_probs=26.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIENP 439 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P 439 (447)
+-|+++++|.++||.-...|++.+.+.....
T Consensus 147 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~ 177 (432)
T PF02458_consen 147 LALGVSFHHAVADGTGFSQFLKAWAEICRGG 177 (432)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHTT
T ss_pred eeeeeeceeccCcccchhHHHHHHHhhhcCC
Confidence 6689999999999999999999999988764
No 215
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=51.31 E-value=20 Score=36.25 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=29.4
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
..-+.||.+|.+. ..++.|+.|..||+|+.|.+
T Consensus 255 ~~~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d 287 (325)
T TIGR02994 255 DCFIFAEDDGLIE-FMIDLGDPVSKGDVIARVYP 287 (325)
T ss_pred CeEEEcCCCeEEE-EecCCCCEeCCCCEEEEEEC
Confidence 3469999999995 57999999999999999986
No 216
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=51.23 E-value=14 Score=35.38 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=27.3
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEE
Q 013218 25 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 25 ~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
.|+-| .+|.|..+.+++|+.|..|++|+.|-
T Consensus 90 ~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSP------FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECC------CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 46666 57999999999999999999999875
No 217
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=51.04 E-value=17 Score=39.38 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=27.1
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
-..|+|.+|++++||.|..|++|+.++++.
T Consensus 124 m~eg~I~~W~vkeGD~V~~g~~l~eVETDK 153 (539)
T PLN02744 124 MTEGNIARWLKKEGDKVSPGEVLCEVETDK 153 (539)
T ss_pred cceeEEEEEEecCCCEecCCCeeEEEeecc
Confidence 457999999999999999999999998664
No 218
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=50.95 E-value=17 Score=40.17 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
+|+--+.+|++||+|++||+|+++.-++
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4666789999999999999999997554
No 219
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=50.47 E-value=30 Score=34.73 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=30.9
Q ss_pred eeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 65 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 65 ~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
...-++||.+|.+. ..++.|+.|+.||+|+.|.+.-
T Consensus 243 ~~~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i~d~~ 278 (316)
T cd06252 243 ARCYVFAPHPGLFE-PLVDLGDEVSAGQVAGRIHFPE 278 (316)
T ss_pred CcEEEEcCCCeEEE-EecCCCCEEcCCCEEEEEECCC
Confidence 44679999999995 5699999999999999998753
No 220
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=50.29 E-value=18 Score=37.74 Aligned_cols=30 Identities=23% Similarity=0.611 Sum_probs=27.8
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 438 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~ 438 (447)
+-|+++++|.++||.-+..|++.+.++...
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 568999999999999999999999998866
No 221
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=49.68 E-value=17 Score=38.35 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=29.8
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHhhCHH
Q 013218 408 IMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 440 (447)
Q Consensus 408 ~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~ 440 (447)
...|.+.+||-+.||.-+..|.++|-+.|+.+.
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~~ 172 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSLS 172 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhcc
Confidence 467899999999999999999999999998753
No 222
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=49.67 E-value=13 Score=39.43 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=29.4
Q ss_pred EeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+.||..|+|.+++|++||.|..||.|+.+...
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AM 635 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLIAM 635 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEEec
Confidence 79999999999999999999999999887643
No 223
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=48.24 E-value=20 Score=32.08 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=29.4
Q ss_pred CCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 48 GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 48 Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
|-.+++|+-|+.++ .+|...-..+.+|++|..|+.||.+.+...
T Consensus 73 ~~~l~~G~~L~l~~-----------veG~~v~~i~~~G~rV~~gd~lA~v~T~KG 116 (150)
T PF09891_consen 73 GILLKKGTELCLVP-----------VEGYQVYPIVDEGDRVRKGDRLAYVTTRKG 116 (150)
T ss_dssp EEEE-TT-B-EEEE-----------EESSEEEESS-TSEEE-TT-EEEEEE-TTS
T ss_pred EEEECCCCEEEEEE-----------ecceEEEEEcccCcEeccCcEEEEEEecCc
Confidence 33567788888876 457778889999999999999999987543
No 224
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=48.14 E-value=25 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.6
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
+..|+ .++++.||.|..|++|+.|-...+
T Consensus 30 ~~vGi--~l~~k~Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGI--ELHKKVGDRVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EE--EESS-TTSEEBTTSEEEEEEESSS
T ss_pred cCcCe--EecCcCcCEECCCCeEEEEEcCCh
Confidence 44555 478999999999999999986543
No 225
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=48.11 E-value=58 Score=26.05 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=33.0
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+.+|+|+.+.-.. ...-...|+.......+-.. +..+.++.||.|..|+.|+.+...
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~~----l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYGH----LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEEEEE----ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEEEec----cccccceecccccCCCEEEecCCC
Confidence 3568887775532 22344455544332332222 445668899999999999998743
No 226
>PRK04350 thymidine phosphorylase; Provisional
Probab=47.39 E-value=32 Score=36.69 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=35.5
Q ss_pred EEeCceeeEEeCCCCeEEEEE------------------------eeCCCCeeecccEEEEEecC
Q 013218 60 VQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 60 iet~K~~~~i~ap~~G~i~~~------------------------~v~~g~~v~~G~~l~~i~~~ 100 (447)
+...+-..+|.|+.+|+|..| +++.||.|..|++|+.|...
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 455677889999999999887 77899999999999999843
No 227
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=47.35 E-value=21 Score=37.57 Aligned_cols=30 Identities=20% Similarity=0.540 Sum_probs=27.9
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 438 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~ 438 (447)
+-|+++++|.+.||.-+..|++.+.++...
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 668999999999999999999999998876
No 228
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=47.16 E-value=23 Score=35.21 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCeecCCCeEEEEEeCceeeEEeCCCCeEE-EEEeeCCCCeeecccEEEEEe
Q 013218 48 GDEIEEFQPLCAVQSDKATIEITSRYKGKV-AQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 48 Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i-~~~~v~~g~~v~~G~~l~~i~ 98 (447)
|..|++||.+..++=. .++.+--|.+ .+ -...+.+|+.|..|+.|+.+.
T Consensus 237 ~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 237 AITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred CCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 7799999999999864 4444444433 32 234578999999999998654
No 229
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=47.11 E-value=23 Score=37.16 Aligned_cols=30 Identities=20% Similarity=0.534 Sum_probs=28.0
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 438 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~ 438 (447)
+-|+++++|.++||.-+..|++.+.+....
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999998876
No 230
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.02 E-value=20 Score=35.41 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=13.3
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~ 86 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQ 86 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 566666666666666666665
No 231
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=46.44 E-value=33 Score=36.66 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=35.0
Q ss_pred EEeCceeeEEeCCCCeEEEEE------------------------eeCCCCeeecccEEEEEecC
Q 013218 60 VQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 60 iet~K~~~~i~ap~~G~i~~~------------------------~v~~g~~v~~G~~l~~i~~~ 100 (447)
+-..+-..+|.||.+|+|..+ +.+.||.|..|++|+.|...
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 445667889999999999887 77899999999999999853
No 232
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.34 E-value=22 Score=34.88 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=11.1
Q ss_pred EEeeCCCCeeecccEEEEEec
Q 013218 79 QLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 79 ~~~v~~g~~v~~G~~l~~i~~ 99 (447)
++++++|+.|..|++|+.++-
T Consensus 61 ~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 61 EWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred EEEeCCCCEecCCCEEEEEEE
Confidence 444555555555555555543
No 233
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=45.93 E-value=36 Score=35.51 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=34.3
Q ss_pred EEeCceeeEEeCCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecC
Q 013218 60 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 60 iet~K~~~~i~ap~~G~i~~~-------------------------------~v~~g~~v~~G~~l~~i~~~ 100 (447)
+-..+-..+|.|+.+|+|..+ +.+.||.|..|++|+.|...
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 345677788999999999877 67799999999999999853
No 234
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=45.55 E-value=16 Score=38.24 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=27.4
Q ss_pred CCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 73 YKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 73 ~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
..|.|.+|.-+|||.+..|++|++|+++..
T Consensus 51 eeGnIvsW~kKeGdkls~GDvl~EVETDKA 80 (470)
T KOG0557|consen 51 EEGNIVSWKKKEGDKLSAGDVLLEVETDKA 80 (470)
T ss_pred cCCceeeEeeccCCccCCCceEEEEecccc
Confidence 579999999999999999999999997654
No 235
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=45.53 E-value=3.1e+02 Score=28.67 Aligned_cols=67 Identities=7% Similarity=0.005 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcC-------------CCeEeeeeeccCCCCHHHH
Q 013218 269 KHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQ-------------HGLAVPNIKNVQSLSILEI 335 (447)
Q Consensus 269 ~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~-------------~Gl~~pvI~~a~~~sl~~i 335 (447)
+.|++++++.|+++--..+--.+ . -.++.+.++++|+.. .+..+.+|+..+..++...
T Consensus 238 gaTiNDiilaa~~~fr~~y~~~~---~------k~~~~lsi~~~VDlRkyl~sk~~sI~Nls~~~~i~I~~dd~~~fe~t 308 (439)
T COG4908 238 GATINDIILAALLKFRLLYNTTH---E------KANNYLSIDMPVDLRKYLPSKEESISNLSSYLTIVINVDDVTDFEKT 308 (439)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhc---h------hhcCeeeeceeeehhhhccccccceeccceeEEEEEeccccccHHHH
Confidence 78999999999954333221111 0 124556666777621 1356678888888888888
Q ss_pred HHHHHHHHH
Q 013218 336 TKELSRLQQ 344 (447)
Q Consensus 336 ~~~~~~l~~ 344 (447)
.+.++....
T Consensus 309 ~~~vk~~~~ 317 (439)
T COG4908 309 LEKVKGIMN 317 (439)
T ss_pred HHHHHhhcC
Confidence 887776554
No 236
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=45.26 E-value=20 Score=28.84 Aligned_cols=27 Identities=26% Similarity=0.144 Sum_probs=20.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
=+-+....|++||.|++||.|+.+...
T Consensus 49 y~~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 49 YGHLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EEEESEESS-TTSEE-TTCEEEEEBSC
T ss_pred EeccccccceecccccCCCEEEecCCC
Confidence 345666779999999999999999743
No 237
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=44.87 E-value=36 Score=35.82 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=32.9
Q ss_pred eCceeeEEeCCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecC
Q 013218 62 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 62 t~K~~~~i~ap~~G~i~~~-------------------------------~v~~g~~v~~G~~l~~i~~~ 100 (447)
..+-..+|.|+.+|+|..+ +++.||.|..|++|+.|...
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECC
Confidence 3566788899999998887 67799999999999999843
No 238
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=44.58 E-value=43 Score=34.66 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=36.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe-------eCCCCeeecccEEEE
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL-------HAPGNIVKVGETLLK 96 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~-------v~~g~~v~~G~~l~~ 96 (447)
+|+-..+.+.|.....+ .+.+..-.+|-|..+|+|.++. |++||.|..||+|..
T Consensus 163 ~GTrl~i~v~Ek~~~p~------~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 163 RGTTLVIKVVEKQEPKP------VLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred EeEEEEEEEEecCCCCC------ccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 57777777666643211 1122334578899999999884 568899999999874
No 239
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=44.06 E-value=19 Score=37.76 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=24.5
Q ss_pred CCCceEEEEEEEcCCCCeecCCCeEEEEE
Q 013218 33 EGIAECELLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 33 ~~~~~g~i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
+-++.+.=+.++++.||.|++||+|+.|=
T Consensus 374 d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 374 DTIDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CCcCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 34455666899999999999999999986
No 240
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=43.44 E-value=40 Score=35.52 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=33.3
Q ss_pred eCceeeEEeCCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecC
Q 013218 62 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 62 t~K~~~~i~ap~~G~i~~~-------------------------------~v~~g~~v~~G~~l~~i~~~ 100 (447)
..+-..+|+|+.+|+|..+ +++.||.|..|++|+.|...
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCC
Confidence 4667788999999999777 67899999999999999843
No 241
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.26 E-value=25 Score=34.78 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=14.4
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 013218 40 LLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 40 i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
-++|+++.|+.|++||+|++++
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~ 87 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVT 87 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEE
Confidence 3566666666666666666665
No 242
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=42.62 E-value=26 Score=34.76 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=11.7
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|+++.|+.|++|++|++++
T Consensus 63 v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 63 IDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEEeCCCCEeCCCCEEEEEE
Confidence 455555555555555555554
No 243
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=42.50 E-value=23 Score=37.87 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=26.3
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 013218 31 TGEGIAECELLKWFVKEGDEIEEFQPLCAVQS 62 (447)
Q Consensus 31 ~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet 62 (447)
+|--++.+.=+.++++.||.|++||+|+.|=+
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 44455666678999999999999999999863
No 244
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=42.45 E-value=33 Score=35.11 Aligned_cols=60 Identities=10% Similarity=0.064 Sum_probs=44.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~-i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
.|.+..|....+..|++||.+...+-.-+.+- ++++. .+ +..+++|+.|..||.|+.+..
T Consensus 280 ~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 280 GGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 34556677777889999999999986544333 35554 23 567899999999999987764
No 245
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.80 E-value=27 Score=34.49 Aligned_cols=21 Identities=24% Similarity=0.579 Sum_probs=14.1
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~ 88 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLE 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 566666777776666666665
No 246
>PRK04350 thymidine phosphorylase; Provisional
Probab=41.64 E-value=24 Score=37.64 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=26.5
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 013218 31 TGEGIAECELLKWFVKEGDEIEEFQPLCAVQS 62 (447)
Q Consensus 31 ~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet 62 (447)
+|--++.+.=+.++++.||.|++||+|+.|=+
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 44456667778999999999999999999863
No 247
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.64 E-value=27 Score=34.79 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=11.3
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~ 107 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELT 107 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 445555555555555555554
No 248
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=41.43 E-value=30 Score=36.31 Aligned_cols=30 Identities=27% Similarity=0.706 Sum_probs=27.7
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 438 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~ 438 (447)
+-|+++++|.++||.-+..|++.+.+....
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 668999999999999999999999998765
No 249
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=41.31 E-value=28 Score=34.27 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=12.0
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 58 v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 58 VDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 445555555555555555554
No 250
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=41.21 E-value=41 Score=35.38 Aligned_cols=40 Identities=28% Similarity=0.446 Sum_probs=33.2
Q ss_pred EEeCceeeEEeCCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEec
Q 013218 60 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 60 iet~K~~~~i~ap~~G~i~~~-------------------------------~v~~g~~v~~G~~l~~i~~ 99 (447)
+-..+-..+|.|+.+|+|..+ +++.||.|..|++|+.|..
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeC
Confidence 334566788899999998887 6779999999999999983
No 251
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=40.89 E-value=80 Score=33.98 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=40.7
Q ss_pred cCCCCeecCCCeEEEEEeCc-e-eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 45 VKEGDEIEEFQPLCAVQSDK-A-TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 45 v~~Gd~V~~g~~l~~iet~K-~-~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
+++||.|..||+|..|.-.- . ..-++.+..|....+...+|+. ++.++|+.++.+..
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y-tv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY-TVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc-eeeEEEEEEecCCC
Confidence 47999999999999875333 2 2235666677777777778874 55689999976554
No 252
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=40.87 E-value=25 Score=37.64 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=26.7
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 013218 31 TGEGIAECELLKWFVKEGDEIEEFQPLCAVQS 62 (447)
Q Consensus 31 ~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet 62 (447)
+|--++.+.=+.++++.||.|++||+|+.|=+
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 45556667778999999999999999999863
No 253
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=40.69 E-value=75 Score=37.25 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=48.8
Q ss_pred EecCCCCCCCceEEEEEEE----cCCCCeecCCCeEEEEE-eCceeeEE--eCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 26 VPLAQTGEGIAECELLKWF----VKEGDEIEEFQPLCAVQ-SDKATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 26 ~~~p~~~~~~~~g~i~~w~----v~~Gd~V~~g~~l~~ie-t~K~~~~i--~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
+.+|.|... .+|. +++||+|.-||++.+|. |.=..+-| +.-..|+|..| ..+|+ -++.++++.++
T Consensus 107 ~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 107 ISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVK 178 (1017)
T ss_pred CCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEE
Confidence 356767654 4554 67899999999999885 33344545 44558999776 67888 35568999998
Q ss_pred cCCC
Q 013218 99 VGDS 102 (447)
Q Consensus 99 ~~~~ 102 (447)
..+.
T Consensus 179 ~~~g 182 (1017)
T PRK14698 179 TPSG 182 (1017)
T ss_pred cCCC
Confidence 6443
No 254
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.65 E-value=29 Score=34.49 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=15.5
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 013218 40 LLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 40 i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
-.+|++++|+.|++||+|++++
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~ 94 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIE 94 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3457777777777777777775
No 255
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.50 E-value=29 Score=34.18 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=12.9
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~ 80 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIE 80 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 456666666666666666654
No 256
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=40.45 E-value=23 Score=37.27 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 013218 33 EGIAECELLKWFVKEGDEIEEFQPLCAVQS 62 (447)
Q Consensus 33 ~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet 62 (447)
+-++.+.=++++++.||.|++||+|+.|=+
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 445556668999999999999999999873
No 257
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.25 E-value=30 Score=34.44 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=12.2
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 78 v~~~~~dG~~v~~g~~i~~i~ 98 (289)
T PRK07896 78 VLDRVEDGARVPPGQALLTVT 98 (289)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 455566666666666555554
No 258
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=39.83 E-value=30 Score=34.68 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=13.3
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|+++.|+.|++|++|++++
T Consensus 80 v~~~~~dG~~v~~G~~i~~v~ 100 (308)
T PLN02716 80 VEWAAIDGDFVHKGLKFGKVT 100 (308)
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 456666666666666666664
No 259
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.62 E-value=31 Score=34.36 Aligned_cols=21 Identities=24% Similarity=0.711 Sum_probs=12.2
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|+++.|+.|++|++|++++
T Consensus 84 v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 84 VTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred EEEEcCCCCEeCCCCEEEEEE
Confidence 455566666666666655554
No 260
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=39.55 E-value=30 Score=33.92 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=16.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
|.=++|++++|+.|++||+|++++
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 334567777777777777777776
No 261
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=38.92 E-value=2e+02 Score=34.36 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=25.3
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhh
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
--+-+++||-++||.-.+-|+++|.++..
T Consensus 133 ~~l~~~~HHii~DG~S~~~l~~el~~~Y~ 161 (1296)
T PRK10252 133 WYWYQRYHHLLVDGFSFPAITRRIAAIYC 161 (1296)
T ss_pred EEEEEecCceeEccccHHHHHHHHHHHHH
Confidence 35788999999999999999999987764
No 262
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.34 E-value=33 Score=33.95 Aligned_cols=22 Identities=5% Similarity=0.228 Sum_probs=14.0
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 013218 40 LLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 40 i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
-++|+++.|+.|++||+|++++
T Consensus 71 ~~~~~~~dG~~v~~g~~i~~i~ 92 (281)
T PRK06106 71 EMRRHLPDGAAVAPGDVIATIS 92 (281)
T ss_pred EEEEEeCCCCEEcCCCEEEEEE
Confidence 4566666666666666666664
No 263
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=38.14 E-value=94 Score=22.22 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=35.1
Q ss_pred CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccc
Q 013218 237 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMN 291 (447)
Q Consensus 237 ~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln 291 (447)
..|+|++-.+-++-..++.+.+.+ +-|++.-++.++-.+|.+...++
T Consensus 3 ~~~~f~lRlP~~l~~~lk~~A~~~--------gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 3 KDPQFNLRLPEELKEKLKERAEEN--------GRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CSEEEEEECEHHHHHHHHHHHHHT--------TS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCceeeECCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHhccccCC
Confidence 568888887777666666655542 67999999999999999876654
No 264
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=38.10 E-value=27 Score=36.72 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=25.4
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
++.+.=+.++++.||.|++||+|+.|=+++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 456667899999999999999999987554
No 265
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=37.57 E-value=79 Score=34.59 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=42.0
Q ss_pred EcCCCCeecCCCeEEEEEeC-ceeeE--EeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 44 FVKEGDEIEEFQPLCAVQSD-KATIE--ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 44 ~v~~Gd~V~~g~~l~~iet~-K~~~~--i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
.+++||.|..||+|..|.-. -..+- ++.-..|++..| +.+|+ .++.++|+.+...+.
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~~G 182 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDEDG 182 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEccCC
Confidence 47889999999999998643 23333 455568999776 67777 566789999986544
No 266
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=37.23 E-value=29 Score=36.19 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.7
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
++.+.=+.++++.||.|++||+|+.|=++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 56666789999999999999999998643
No 267
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=36.93 E-value=39 Score=35.00 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=20.3
Q ss_pred ceEEEEEEE-------cCCCCeecCCCeEEEE
Q 013218 36 AECELLKWF-------VKEGDEIEEFQPLCAV 60 (447)
Q Consensus 36 ~~g~i~~w~-------v~~Gd~V~~g~~l~~i 60 (447)
.+|.|.++. |++||.|++||+|..=
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG 227 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLISG 227 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEee
Confidence 567888774 6899999999999843
No 268
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.51 E-value=37 Score=33.59 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=10.3
Q ss_pred eeCCCCeeecccEEEEEec
Q 013218 81 LHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 81 ~v~~g~~v~~G~~l~~i~~ 99 (447)
++++|+.|..|++|+.++-
T Consensus 63 ~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 63 RKRDGEEVKAGEVILELKG 81 (278)
T ss_pred EcCCCCEecCCCEEEEEEE
Confidence 4455555555555555543
No 269
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=36.42 E-value=37 Score=33.27 Aligned_cols=20 Identities=35% Similarity=0.778 Sum_probs=12.9
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 013218 42 KWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 42 ~w~v~~Gd~V~~g~~l~~ie 61 (447)
+|++++|+.|++||+|++++
T Consensus 57 ~~~~~dG~~v~~g~~i~~i~ 76 (265)
T TIGR00078 57 EWLVKDGDRVEPGEVVAEVE 76 (265)
T ss_pred EEEeCCCCEecCCCEEEEEE
Confidence 56666666666666666665
No 270
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=35.47 E-value=39 Score=33.36 Aligned_cols=21 Identities=14% Similarity=0.138 Sum_probs=10.3
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|+++.|+.|++|++|++++
T Consensus 62 ~~~~~~dG~~v~~g~~i~~~~ 82 (277)
T TIGR01334 62 IDYAVPSGSRALAGTLLLEAK 82 (277)
T ss_pred EEEEeCCCCEeCCCCEEEEEE
Confidence 444455555555555554443
No 271
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=35.31 E-value=83 Score=34.38 Aligned_cols=54 Identities=22% Similarity=0.312 Sum_probs=41.0
Q ss_pred EcCCCCeecCCCeEEEEE-eCceeeEE--eCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 44 FVKEGDEIEEFQPLCAVQ-SDKATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 44 ~v~~Gd~V~~g~~l~~ie-t~K~~~~i--~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
.+++||.|..||++.+|. |.-..+-| +.-..|+|..+ ..+|+ .++.++|+.++.
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEee
Confidence 588899999999999765 44444554 44457999876 67777 567899999985
No 272
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=33.95 E-value=2.1e+02 Score=26.39 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=40.8
Q ss_pred ceEEEEEEEcCCCCeec--------CCCe-EEEEEeCceeeEEeCCCCeEE-E--EEeeCCCCeeecccEEEEEecC
Q 013218 36 AECELLKWFVKEGDEIE--------EFQP-LCAVQSDKATIEITSRYKGKV-A--QLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~--------~g~~-l~~iet~K~~~~i~ap~~G~i-~--~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.+|+|.+....+|+... +++- ++.+||+...+-+.. ..|.+ . ...+++|+.+..|+.++.+.-.
T Consensus 79 ~~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~~v~kGeeiG~f~fG 154 (189)
T TIGR00164 79 AGGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGEKVSRGQRIGMIRFG 154 (189)
T ss_pred cccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCCEEecCcEEEEEecC
Confidence 47888888888887433 3444 357777653333221 22322 1 2356789999999999998754
No 273
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=31.75 E-value=60 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=18.9
Q ss_pred eEEEEEeeCCCCeeecccEEEEEec
Q 013218 75 GKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 75 G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
|.-.++++++|+.+..|++|+.+.-
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 3345789999999999999999863
No 274
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=31.57 E-value=28 Score=35.10 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=9.7
Q ss_pred EcCCCCeecCCCeEEEEE
Q 013218 44 FVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 44 ~v~~Gd~V~~g~~l~~ie 61 (447)
+|++||.|++||.|+++.
T Consensus 273 ~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 273 LVREQQEVKAGQKIATMG 290 (319)
T ss_pred ccCCcCEECCCCeEEeEc
Confidence 455555555555555554
No 275
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=31.39 E-value=1.2e+02 Score=30.61 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.2
Q ss_pred EEeeCCCCeeecccEEEEEecCC
Q 013218 79 QLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 79 ~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+++|++||.|..||.|+.+...+
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMGSTG 293 (319)
T ss_pred ccccCCcCEECCCCeEEeEcCCC
Confidence 45788999999999999987543
No 276
>PRK11637 AmiB activator; Provisional
Probab=30.33 E-value=85 Score=32.83 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.6
Q ss_pred EeeCCCCeeecccEEEEEecC
Q 013218 80 LLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 80 ~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+.|.+|+.|..|++|+.+...
T Consensus 381 ~~v~~G~~V~~G~~ig~~g~~ 401 (428)
T PRK11637 381 ALVSVGAQVRAGQPIALVGSS 401 (428)
T ss_pred CCCCCcCEECCCCeEEeecCC
Confidence 458899999999999988654
No 277
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=30.13 E-value=39 Score=28.67 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=26.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEe-CCCCeEEEEEeeCCCCeeecccEEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEIT-SRYKGKVAQLLHAPGNIVKVGETLL 95 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~-ap~~G~i~~~~v~~g~~v~~G~~l~ 95 (447)
..|+|.++...+ +|.-...|++.....-+. -|.. .++.|.+||.|..||+|.
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~G---peLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAG---PELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESS---S-BS--TT-EETTT-BSB
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC---CeEEEcCCCEEecCCccc
Confidence 468888886644 455566666554322211 1111 145788888888888764
No 278
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=29.53 E-value=66 Score=33.31 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.7
Q ss_pred ceEEEEEEE-------cCCCCeecCCCeEEEEE
Q 013218 36 AECELLKWF-------VKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 36 ~~g~i~~w~-------v~~Gd~V~~g~~l~~ie 61 (447)
.+|+|.+.. |++||.|++||+|..=.
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG~ 225 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLISGI 225 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEEeE
Confidence 468888775 67899999999998543
No 279
>PRK12467 peptide synthase; Provisional
Probab=29.15 E-value=1.2e+03 Score=31.98 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.5
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhh
Q 013218 411 VNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 411 lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
+-+++||-++||.-...|+++|.++..
T Consensus 177 l~l~~HHii~DG~S~~~l~~el~~~Y~ 203 (3956)
T PRK12467 177 LVVTLHHIISDGWSMRVLVEELVQLYS 203 (3956)
T ss_pred EEEecCeeeEccchHHHHHHHHHHHHH
Confidence 679999999999999999999988764
No 280
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.01 E-value=58 Score=28.10 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218 140 PTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176 (447)
Q Consensus 140 P~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~ 176 (447)
-..+.-|++.|++..-|+=+| +-||++||+.+..+
T Consensus 48 ~~i~~aa~~aGl~y~~iPV~~--~~iT~~dV~~f~~A 82 (130)
T COG3453 48 AAIAAAAEAAGLTYTHIPVTG--GGITEADVEAFQRA 82 (130)
T ss_pred HHHHHHHHhcCCceEEeecCC--CCCCHHHHHHHHHH
Confidence 456778999999999999887 47999999999865
No 281
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=28.15 E-value=1.2e+02 Score=33.18 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=40.3
Q ss_pred cCCCCeecCCCeEEEE-EeCceeeEE--eCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 45 VKEGDEIEEFQPLCAV-QSDKATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 45 v~~Gd~V~~g~~l~~i-et~K~~~~i--~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
+++||.|..||+++++ |+.-.++.| +.-..|+|..+ ..+|+ .++.++++.++.
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~ 176 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDT 176 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEec
Confidence 7899999999999988 444444443 44569999776 67777 466789999885
No 282
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=27.81 E-value=51 Score=34.34 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=13.2
Q ss_pred EeeCCCCeeecccEEEEEec
Q 013218 80 LLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 80 ~~v~~g~~v~~G~~l~~i~~ 99 (447)
++.+.|+.|.+|++|+.|..
T Consensus 381 l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 381 LHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred EEecCCCeeccCCeEEEEec
Confidence 44566777777777776665
No 283
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=27.44 E-value=48 Score=28.56 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=25.1
Q ss_pred ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHH
Q 013218 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173 (447)
Q Consensus 136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 173 (447)
-...|.+.++++++|||++.. -+ .++.+|++.+
T Consensus 40 ~~~~~~a~~~l~~~Gid~~~~---~~--~l~~~~~~~~ 72 (140)
T smart00226 40 GGADPRAVEVLKEHGIALSHH---AS--QLTSSDFKNA 72 (140)
T ss_pred CCCCHHHHHHHHHcCcCccce---ec--cCCHHHHHhC
Confidence 346899999999999998632 22 7888887654
No 284
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=26.43 E-value=71 Score=38.49 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=29.4
Q ss_pred EEEcCCCCeecCCCeEEEEEe--------CceeeEEeCCCCeEE
Q 013218 42 KWFVKEGDEIEEFQPLCAVQS--------DKATIEITSRYKGKV 77 (447)
Q Consensus 42 ~w~v~~Gd~V~~g~~l~~iet--------~K~~~~i~ap~~G~i 77 (447)
.++|+.||.|++||+|+|+.. .|+...|-|..+|.+
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 468999999999999999974 345567888888874
No 285
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=26.17 E-value=62 Score=26.14 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=26.7
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhhCH
Q 013218 411 VNIGADHRVLDGATVAKFCNEWKQLIENP 439 (447)
Q Consensus 411 lslt~DHRvvDG~~aa~Fl~~l~~~Le~P 439 (447)
.++.+|-|+.++....++++.+++++++-
T Consensus 79 a~~~~~~R~~p~~~~~~i~~~i~~~~~~~ 107 (111)
T PF07687_consen 79 ATLTVDIRYPPGEDLEEIKAEIEAAVEKI 107 (111)
T ss_dssp EEEEEEEEESTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999864
No 286
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=25.84 E-value=87 Score=25.36 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCCeEEEEEeeCC-CCeeecccEEEEEecCCC
Q 013218 72 RYKGKVAQLLHAP-GNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 72 p~~G~i~~~~v~~-g~~v~~G~~l~~i~~~~~ 102 (447)
..-|.|..+.... |+.|..|++|+.|+....
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~ 57 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVESVKA 57 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEEEccE
Confidence 4468888876665 999999999999996543
No 287
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=25.82 E-value=22 Score=30.73 Aligned_cols=20 Identities=45% Similarity=0.602 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHhCCCCCCcc
Q 013218 138 ATPTVRNLAKLYGINLYDVD 157 (447)
Q Consensus 138 asP~aR~lA~e~gidl~~v~ 157 (447)
--|.+|.||..+||++++|+
T Consensus 34 kLPSvRelA~~~~VNpnTv~ 53 (125)
T COG1725 34 KLPSVRELAKDLGVNPNTVQ 53 (125)
T ss_pred CCCcHHHHHHHhCCCHHHHH
Confidence 35899999999999998874
No 288
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.18 E-value=73 Score=31.71 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=12.5
Q ss_pred EEEEEc--CCCCeecCCCeEEEEE
Q 013218 40 LLKWFV--KEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 40 i~~w~v--~~Gd~V~~g~~l~~ie 61 (447)
..+|++ +.|+.|++||+|++++
T Consensus 72 ~~~~~~~~~dG~~v~~G~~i~~v~ 95 (290)
T PRK06559 72 TFQNPHQFKDGDRLTSGDLVLEII 95 (290)
T ss_pred EEEEeecCCCCCEecCCCEEEEEE
Confidence 345555 6666666666666554
No 289
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=24.46 E-value=1.3e+02 Score=31.45 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=18.5
Q ss_pred EEEeCceeeEEeCCCCeEEEEEe
Q 013218 59 AVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 59 ~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
.+...+-..+|.|..+|+|..+.
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id 351 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEID 351 (435)
T ss_pred hcccCceEEEEeccCceeEEeec
Confidence 44456778899999999999883
No 290
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=24.14 E-value=73 Score=32.47 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=15.2
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 013218 43 WFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 43 w~v~~Gd~V~~g~~l~~ie 61 (447)
|.+++|+.|.+|++|++||
T Consensus 73 ~~~~dG~~v~~g~~il~i~ 91 (343)
T PRK08662 73 YALPEGTLFDPKEPVMRIE 91 (343)
T ss_pred EEeCCCCEecCCceEEEEE
Confidence 7788888888888888776
No 291
>CHL00037 petA cytochrome f
Probab=23.22 E-value=2e+02 Score=28.64 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=30.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEE-EeCcee-eEEeCCCCeEEEEEeeCCCCeeecccEEE
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAV-QSDKAT-IEITSRYKGKVAQLLHAPGNIVKVGETLL 95 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~i-et~K~~-~~i~ap~~G~i~~~~v~~g~~v~~G~~l~ 95 (447)
..|+|.++...+ +|.-...| +|.... +.-.-|... ++.|.+||.|.+||+|.
T Consensus 210 ~~G~I~~I~~~e-----kGg~~vti~~t~~G~~v~~~iP~Gp---~LiVs~G~~v~~~qpLT 263 (320)
T CHL00037 210 AAGIVSKILRKE-----KGGYEITIVDTSDGRQVVDIIPPGP---ELLVSEGESIKLDQPLT 263 (320)
T ss_pred cCcEEEEEEEcC-----CCcEEEEEEecCCCCEEEEeeCCCC---eEEEecCceEecCCccc
Confidence 458888887643 45545555 444322 222223333 45688999999888874
No 292
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=22.45 E-value=1.1e+02 Score=39.50 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=17.2
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 013218 43 WFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 43 w~v~~Gd~V~~g~~l~~ie 61 (447)
+.|++||.|+.||+|+.+-
T Consensus 2616 l~v~~g~~v~~gdilak~p 2634 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIP 2634 (2890)
T ss_pred EEecCCCEecccceEeecc
Confidence 6799999999999999874
No 293
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=21.44 E-value=99 Score=31.66 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=9.9
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
..|.+++|+.|..|++|++||
T Consensus 73 ~i~a~~eG~~v~~gepvl~i~ 93 (352)
T PRK07188 73 KIRYLKDGDIINPFETVLEIE 93 (352)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 344444444444444444444
No 294
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=20.54 E-value=70 Score=33.89 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=27.2
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
.-.-+++.|.-.+..|++||+|..||+|+.-.
T Consensus 30 ~ipl~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~ 61 (447)
T TIGR01936 30 AVDGRDFVGMRPKMKVRPGDKVKAGQPLFEDK 61 (447)
T ss_pred EEechhcCCCCCceEeCcCCEEcCCCEeEecC
Confidence 34566788998999999999999999999754
No 295
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=20.41 E-value=92 Score=27.35 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHH
Q 013218 137 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 172 (447)
Q Consensus 137 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~ 172 (447)
.+.|.+.++++++|||++.-. .-.|+.+|++.
T Consensus 44 ~~~~~a~~~l~~~Gid~~~h~----s~~lt~~~~~~ 75 (144)
T PRK11391 44 PADATAADVAANHGVSLEGHA----GRKLTAEMARN 75 (144)
T ss_pred CCCHHHHHHHHHcCCCcCCCc----cCcCCHHHHhh
Confidence 467999999999999986422 23477777764
No 296
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=20.22 E-value=1e+02 Score=30.02 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=17.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
+.+..|.+.+|+.|..|+++++||
T Consensus 49 ~~~~~~~~~eG~~v~~g~~vl~i~ 72 (281)
T cd00516 49 GPLVILAVPEGTVVEPGEPLLTIE 72 (281)
T ss_pred CceEEEECCCCCEecCCCEEEEEE
Confidence 456677777777777777777776
No 297
>PRK13380 glycine cleavage system protein H; Provisional
Probab=20.20 E-value=1.1e+02 Score=27.09 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=29.3
Q ss_pred EEeCCCCeEEEEEeeC-CCCeeecccEEEEEecCCC
Q 013218 68 EITSRYKGKVAQLLHA-PGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v~-~g~~v~~G~~l~~i~~~~~ 102 (447)
++-...-|.|..+.++ +|+.|..|++++.|+....
T Consensus 37 d~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~ 72 (144)
T PRK13380 37 DYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKW 72 (144)
T ss_pred HHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcce
Confidence 4556778999999887 8999999999999987544
No 298
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=20.05 E-value=1.4e+02 Score=38.67 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=14.4
Q ss_pred EeeCCCCeeecccEEEEEec
Q 013218 80 LLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 80 ~~v~~g~~v~~G~~l~~i~~ 99 (447)
+.|++|+.|.+|++|+.+--
T Consensus 2616 l~v~~g~~v~~gdilak~p~ 2635 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPK 2635 (2890)
T ss_pred EEecCCCEecccceEeeccc
Confidence 45677788888888877743
No 299
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=20.03 E-value=2.8e+02 Score=25.97 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=35.0
Q ss_pred ceEEEEEEEcCCCCeecC--------CC-eEEEEEeCcee-e---EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 36 AECELLKWFVKEGDEIEE--------FQ-PLCAVQSDKAT-I---EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~--------g~-~l~~iet~K~~-~---~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.+|+|.++...+|+.... ++ .+..+||++.. + .|-+-..+.|. ..+++|+.+..|+.++.+.-.
T Consensus 98 ~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~v~kGe~~G~f~fG 174 (206)
T PRK05305 98 VSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDEVERGERFGLIRFG 174 (206)
T ss_pred ccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCEEccCcEEeEEecC
Confidence 367777777777764443 22 33356654211 1 12222223332 245778888888888877654
Done!