Query 013218
Match_columns 447
No_of_seqs 241 out of 2161
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 2.2E-93 7.5E-98 736.1 1.1 411 24-446 3-428 (428)
2 2ii3_A Lipoamide acyltransfera 100.0 9.6E-62 3.3E-66 469.8 23.6 233 215-447 30-262 (262)
3 3l60_A Branched-chain alpha-ke 100.0 5.1E-60 1.7E-64 454.1 26.7 222 220-446 18-242 (250)
4 1dpb_A Dihydrolipoyl-transacet 100.0 3.1E-60 1.1E-64 455.3 25.2 229 215-444 14-243 (243)
5 1scz_A E2, dihydrolipoamide su 100.0 1.6E-60 5.4E-65 454.6 21.3 228 216-446 4-233 (233)
6 3mae_A 2-oxoisovalerate dehydr 100.0 6E-60 2.1E-64 455.1 19.7 228 214-444 16-245 (256)
7 3rqc_A Probable lipoamide acyl 100.0 8.3E-59 2.8E-63 440.2 22.1 218 215-445 5-223 (224)
8 3b8k_A PDCE2;, dihydrolipoylly 100.0 3.9E-59 1.3E-63 447.0 15.7 227 215-444 11-239 (239)
9 2xt6_A 2-oxoglutarate decarbox 100.0 4.9E-46 1.7E-50 419.9 17.2 212 231-442 1-225 (1113)
10 1q23_A Chloramphenicol acetylt 100.0 3.9E-43 1.3E-47 331.6 23.8 184 234-439 26-215 (219)
11 3cla_A Type III chloramphenico 100.0 1.3E-42 4.6E-47 326.7 25.5 184 234-438 21-210 (213)
12 2i9d_A Chloramphenicol acetylt 100.0 5.4E-41 1.8E-45 316.2 22.5 182 235-436 24-216 (217)
13 1zy8_K Pyruvate dehydrogenase 100.0 7.6E-31 2.6E-35 248.3 5.1 154 23-176 3-169 (229)
14 2dnc_A Pyruvate dehydrogenase 99.8 4.6E-18 1.6E-22 140.1 12.5 84 19-102 3-87 (98)
15 3crk_C Dihydrolipoyllysine-res 99.8 8.1E-18 2.8E-22 135.6 12.7 79 23-101 5-84 (87)
16 1k8m_A E2 component of branche 99.7 1E-17 3.4E-22 136.8 10.9 80 22-101 3-82 (93)
17 1y8o_B Dihydrolipoyllysine-res 99.7 1.3E-17 4.6E-22 143.4 11.9 81 21-101 25-106 (128)
18 2dne_A Dihydrolipoyllysine-res 99.7 1.7E-17 5.8E-22 139.1 11.0 79 22-100 6-85 (108)
19 1ghj_A E2, E2, the dihydrolipo 99.7 5.3E-17 1.8E-21 128.3 9.6 76 24-99 2-77 (79)
20 2l5t_A Lipoamide acyltransfera 99.7 2.2E-16 7.6E-21 124.0 8.9 75 24-98 2-76 (77)
21 1pmr_A Dihydrolipoyl succinylt 99.6 1.7E-17 5.8E-22 131.5 -0.2 76 24-99 3-78 (80)
22 1qjo_A Dihydrolipoamide acetyl 99.6 8.4E-16 2.9E-20 121.5 9.2 75 24-100 3-77 (80)
23 1iyu_A E2P, dihydrolipoamide a 99.6 3.4E-15 1.2E-19 117.8 10.7 75 24-101 2-76 (79)
24 1gjx_A Pyruvate dehydrogenase; 99.6 1E-15 3.6E-20 121.3 5.2 77 23-100 2-78 (81)
25 2k7v_A Dihydrolipoyllysine-res 99.4 1.4E-14 4.9E-19 115.9 0.7 72 24-101 3-74 (85)
26 1z6h_A Biotin/lipoyl attachmen 99.4 2.2E-12 7.4E-17 99.4 9.5 65 36-100 6-70 (72)
27 2kcc_A Acetyl-COA carboxylase 99.3 1.5E-12 5.3E-17 103.8 6.4 64 36-100 12-75 (84)
28 2dn8_A Acetyl-COA carboxylase 99.3 7.2E-12 2.4E-16 103.3 9.2 64 36-100 24-87 (100)
29 2jku_A Propionyl-COA carboxyla 99.3 8.8E-13 3E-17 107.5 2.9 76 23-98 15-94 (94)
30 2d5d_A Methylmalonyl-COA decar 99.3 2.3E-11 7.7E-16 94.1 9.6 63 36-98 12-74 (74)
31 2eq9_C Pyruvate dehydrogenase 99.3 3.6E-12 1.2E-16 87.5 4.2 39 136-174 1-39 (41)
32 2ejm_A Methylcrotonoyl-COA car 99.2 2.1E-11 7.1E-16 100.3 9.4 67 36-102 21-87 (99)
33 1dcz_A Transcarboxylase 1.3S s 99.2 2.3E-11 8E-16 94.9 8.5 63 36-98 15-77 (77)
34 1bdo_A Acetyl-COA carboxylase; 99.2 2.1E-11 7.3E-16 96.0 7.8 62 37-98 12-80 (80)
35 3rnm_E Lipoamide acyltransfera 99.2 5.1E-12 1.8E-16 92.9 3.9 43 134-176 6-48 (58)
36 2eq8_C Pyruvate dehydrogenase 99.2 7.1E-12 2.4E-16 85.6 4.3 37 138-174 2-38 (40)
37 2eq7_C 2-oxoglutarate dehydrog 99.2 4.5E-12 1.5E-16 86.6 3.0 38 137-174 1-38 (40)
38 1w85_I Dihydrolipoyllysine-res 99.1 2.7E-11 9.2E-16 86.4 4.2 41 135-175 6-46 (49)
39 1w4i_A Pyruvate dehydrogenase 99.1 4.3E-11 1.5E-15 89.6 5.0 42 136-177 5-46 (62)
40 1bal_A Dihydrolipoamide succin 99.1 2.4E-11 8.1E-16 87.4 2.5 40 135-174 9-48 (51)
41 3n6r_A Propionyl-COA carboxyla 99.1 1.3E-10 4.6E-15 126.3 9.3 63 36-98 619-681 (681)
42 2coo_A Lipoamide acyltransfera 99.1 1.6E-10 5.5E-15 88.4 6.6 42 135-176 15-56 (70)
43 2f60_K Pyruvate dehydrogenase 99.0 1E-10 3.5E-15 87.9 3.2 42 135-176 9-50 (64)
44 3va7_A KLLA0E08119P; carboxyla 99.0 4.1E-10 1.4E-14 129.1 9.5 61 37-97 1175-1235(1236)
45 3hbl_A Pyruvate carboxylase; T 99.0 5.3E-10 1.8E-14 127.7 9.2 65 36-100 1084-1148(1150)
46 3u9t_A MCC alpha, methylcroton 99.0 5.3E-11 1.8E-15 129.4 0.0 65 36-100 609-673 (675)
47 2k32_A A; NMR {Campylobacter j 98.8 5.5E-09 1.9E-13 88.0 6.6 66 36-101 8-103 (116)
48 3bg3_A Pyruvate carboxylase, m 98.8 2.7E-09 9.1E-14 115.9 3.6 63 36-98 656-718 (718)
49 1zko_A Glycine cleavage system 98.7 1.1E-08 3.7E-13 88.5 6.5 62 40-101 47-116 (136)
50 2qf7_A Pyruvate carboxylase pr 98.7 1.1E-08 3.7E-13 117.2 5.9 63 36-98 1102-1164(1165)
51 1onl_A Glycine cleavage system 98.3 8.1E-07 2.8E-11 76.0 5.7 64 38-101 36-107 (128)
52 1hpc_A H protein of the glycin 98.3 4.3E-07 1.5E-11 78.0 3.8 63 38-100 36-106 (131)
53 3a7l_A H-protein, glycine clea 98.2 1.1E-06 3.7E-11 75.3 5.9 63 38-100 37-107 (128)
54 3ne5_B Cation efflux system pr 97.9 2.1E-05 7.1E-10 80.5 7.9 65 36-100 128-241 (413)
55 2f1m_A Acriflavine resistance 97.8 6.9E-06 2.4E-10 79.0 3.1 65 36-100 29-166 (277)
56 3lnn_A Membrane fusion protein 97.8 2.4E-05 8.4E-10 78.0 7.2 65 36-100 64-205 (359)
57 3fpp_A Macrolide-specific effl 97.8 2.7E-05 9.4E-10 77.1 6.2 65 36-100 38-190 (341)
58 3klr_A Glycine cleavage system 97.7 4.7E-05 1.6E-09 64.6 6.2 60 23-83 18-78 (125)
59 3mxu_A Glycine cleavage system 97.6 9.1E-05 3.1E-09 64.1 6.1 60 23-83 40-100 (143)
60 1vf7_A Multidrug resistance pr 97.5 3.5E-05 1.2E-09 77.5 3.2 64 36-99 50-172 (369)
61 3tzu_A GCVH, glycine cleavage 97.5 9.5E-05 3.2E-09 63.6 5.3 60 21-81 33-93 (137)
62 3hgb_A Glycine cleavage system 97.3 0.00037 1.3E-08 61.0 6.1 44 38-81 59-103 (155)
63 4dk0_A Putative MACA; alpha-ha 97.0 3.8E-05 1.3E-09 76.8 -3.1 63 36-98 39-189 (369)
64 2dn8_A Acetyl-COA carboxylase 96.7 0.00086 2.9E-08 54.5 3.0 47 54-100 5-51 (100)
65 3na6_A Succinylglutamate desuc 96.4 0.0074 2.5E-07 59.7 8.4 61 37-100 265-329 (331)
66 3cdx_A Succinylglutamatedesucc 96.3 0.011 3.6E-07 59.1 8.8 62 36-100 274-339 (354)
67 1z6h_A Biotin/lipoyl attachmen 96.1 0.0065 2.2E-07 45.6 4.8 33 68-100 1-33 (72)
68 3fmc_A Putative succinylglutam 96.1 0.013 4.5E-07 58.7 8.5 58 40-99 300-363 (368)
69 2d5d_A Methylmalonyl-COA decar 96.0 0.0091 3.1E-07 44.9 5.2 35 67-101 6-40 (74)
70 1dcz_A Transcarboxylase 1.3S s 95.9 0.0092 3.1E-07 45.4 4.9 35 66-100 8-42 (77)
71 2gpr_A Glucose-permease IIA co 95.8 0.012 4.3E-07 51.5 6.0 60 36-99 14-112 (154)
72 1f3z_A EIIA-GLC, glucose-speci 95.8 0.0086 2.9E-07 52.9 4.9 60 36-99 19-117 (161)
73 2k32_A A; NMR {Campylobacter j 95.5 0.015 5.1E-07 48.1 5.0 34 67-100 2-35 (116)
74 2kcc_A Acetyl-COA carboxylase 95.5 0.0096 3.3E-07 46.5 3.6 36 66-101 5-40 (84)
75 1ax3_A Iiaglc, glucose permeas 95.3 0.012 4.2E-07 51.9 4.0 60 36-99 19-117 (162)
76 2ejm_A Methylcrotonoyl-COA car 94.5 0.032 1.1E-06 44.9 4.1 37 65-101 13-49 (99)
77 2qj8_A MLR6093 protein; struct 94.2 0.088 3E-06 51.8 7.6 61 36-99 264-328 (332)
78 1bdo_A Acetyl-COA carboxylase; 94.1 0.04 1.4E-06 42.2 3.8 35 67-101 5-46 (80)
79 2jku_A Propionyl-COA carboxyla 94.1 0.024 8.1E-07 45.3 2.5 35 66-100 25-59 (94)
80 2f1m_A Acriflavine resistance 93.9 0.056 1.9E-06 51.4 5.2 52 47-99 4-55 (277)
81 2xha_A NUSG, transcription ant 93.9 0.053 1.8E-06 49.0 4.6 34 41-80 21-54 (193)
82 2l5t_A Lipoamide acyltransfera 93.3 0.044 1.5E-06 41.7 2.6 32 70-101 11-42 (77)
83 3lnn_A Membrane fusion protein 92.9 0.12 4.1E-06 50.9 5.9 57 44-100 34-91 (359)
84 3fpp_A Macrolide-specific effl 92.8 0.11 3.9E-06 50.7 5.5 56 44-100 10-65 (341)
85 1ghj_A E2, E2, the dihydrolipo 92.5 0.072 2.4E-06 40.7 2.9 31 71-101 12-42 (79)
86 3crk_C Dihydrolipoyllysine-res 92.2 0.13 4.6E-06 40.1 4.1 30 72-101 17-46 (87)
87 1k8m_A E2 component of branche 91.9 0.19 6.4E-06 39.9 4.8 30 72-101 16-45 (93)
88 3d4r_A Domain of unknown funct 91.8 0.19 6.4E-06 44.0 4.9 50 36-85 107-157 (169)
89 1gjx_A Pyruvate dehydrogenase; 91.7 0.11 3.7E-06 39.8 3.1 33 69-101 10-42 (81)
90 1qjo_A Dihydrolipoamide acetyl 91.1 0.19 6.5E-06 38.3 3.9 28 74-101 14-41 (80)
91 2xhc_A Transcription antitermi 91.1 0.19 6.6E-06 49.8 4.9 33 41-79 61-93 (352)
92 2dnc_A Pyruvate dehydrogenase 91.0 0.24 8.2E-06 39.7 4.5 29 73-101 20-48 (98)
93 2k7v_A Dihydrolipoyllysine-res 90.6 0.02 6.9E-07 44.7 -2.2 35 67-101 3-37 (85)
94 2dne_A Dihydrolipoyllysine-res 90.2 0.2 6.8E-06 41.0 3.5 30 72-101 19-48 (108)
95 1vf7_A Multidrug resistance pr 90.2 0.2 6.7E-06 49.9 4.1 54 45-99 23-76 (369)
96 3ne5_B Cation efflux system pr 89.7 0.26 9E-06 49.8 4.7 45 56-100 110-156 (413)
97 2xha_A NUSG, transcription ant 89.2 0.2 6.7E-06 45.3 2.9 45 45-95 85-157 (193)
98 1y8o_B Dihydrolipoyllysine-res 87.7 0.46 1.6E-05 40.1 4.1 29 73-101 40-68 (128)
99 1pmr_A Dihydrolipoyl succinylt 87.5 0.13 4.4E-06 39.4 0.5 31 71-101 13-43 (80)
100 3our_B EIIA, phosphotransferas 87.3 0.96 3.3E-05 40.4 6.0 60 36-99 41-139 (183)
101 1iyu_A E2P, dihydrolipoamide a 87.2 0.36 1.2E-05 36.6 2.9 28 36-63 48-75 (79)
102 4dk0_A Putative MACA; alpha-ha 87.1 0.19 6.4E-06 49.7 1.5 55 45-100 12-66 (369)
103 2auk_A DNA-directed RNA polyme 86.9 0.78 2.7E-05 41.4 5.4 47 41-89 62-108 (190)
104 3n6r_A Propionyl-COA carboxyla 86.8 0.57 1.9E-05 50.6 5.2 36 66-101 612-647 (681)
105 3va7_A KLLA0E08119P; carboxyla 81.7 1.2 4.1E-05 51.3 5.1 37 65-101 1166-1202(1236)
106 3hbl_A Pyruvate carboxylase; T 81.6 1.2 4.1E-05 51.0 5.1 35 67-101 1078-1112(1150)
107 4hvm_A Tlmii; PSI-biology, mid 81.0 48 0.0016 33.2 16.6 28 410-437 135-162 (493)
108 3bg3_A Pyruvate carboxylase, m 79.6 1 3.5E-05 48.8 3.4 35 67-101 650-684 (718)
109 2gpr_A Glucose-permease IIA co 76.7 1.1 3.9E-05 38.9 2.2 58 37-97 87-153 (154)
110 3lu0_D DNA-directed RNA polyme 76.2 2.4 8.2E-05 48.6 5.2 45 42-88 1002-1046(1407)
111 3u9t_A MCC alpha, methylcroton 75.9 0.55 1.9E-05 50.7 0.0 35 67-101 603-637 (675)
112 2xhc_A Transcription antitermi 74.8 0.97 3.3E-05 44.8 1.4 28 45-78 125-152 (352)
113 2qf7_A Pyruvate carboxylase pr 74.1 2.2 7.4E-05 48.9 4.3 35 67-101 1096-1130(1165)
114 2bco_A Succinylglutamate desuc 68.2 3 0.0001 41.1 3.3 51 43-100 279-329 (350)
115 1zy8_K Pyruvate dehydrogenase 66.8 1.2 4E-05 41.4 0.0 30 72-101 15-44 (229)
116 3our_B EIIA, phosphotransferas 64.9 3.7 0.00013 36.6 2.9 27 38-64 115-141 (183)
117 3dva_I Dihydrolipoyllysine-res 62.6 1.6 5.4E-05 44.4 0.0 29 36-64 52-80 (428)
118 3fot_A 15-O-acetyltransferase; 62.4 17 0.00058 37.7 7.9 173 248-436 288-514 (519)
119 3it5_A Protease LASA; metallop 58.5 23 0.00078 31.3 7.0 68 18-99 29-104 (182)
120 3fmc_A Putative succinylglutam 58.4 7.2 0.00025 38.6 4.0 35 64-99 288-322 (368)
121 3na6_A Succinylglutamate desuc 56.9 9.2 0.00031 37.2 4.4 36 64-100 255-290 (331)
122 3d4r_A Domain of unknown funct 55.7 12 0.0004 32.8 4.3 42 50-102 95-136 (169)
123 2dsj_A Pyrimidine-nucleoside ( 55.3 14 0.00048 37.3 5.5 41 60-101 322-393 (423)
124 1f3z_A EIIA-GLC, glucose-speci 54.8 7.1 0.00024 34.1 2.9 23 41-63 96-118 (161)
125 1brw_A PYNP, protein (pyrimidi 54.4 16 0.00055 37.0 5.8 42 60-101 329-401 (433)
126 2bgh_A Vinorine synthase; VS, 52.8 12 0.0004 37.5 4.6 30 409-438 152-181 (421)
127 2rkv_A Trichothecene 3-O-acety 51.6 13 0.00044 37.3 4.7 30 409-438 148-177 (451)
128 1qpo_A Quinolinate acid phosph 51.3 11 0.00036 36.1 3.7 23 39-61 71-93 (284)
129 2xr7_A Malonyltransferase; xen 51.2 12 0.0004 37.7 4.3 29 409-437 157-185 (453)
130 2e1v_A Acyl transferase; BAHD 50.7 13 0.00045 37.4 4.6 29 409-437 162-190 (454)
131 3h5q_A PYNP, pyrimidine-nucleo 49.9 18 0.00061 36.7 5.3 37 62-98 334-401 (436)
132 3tqv_A Nicotinate-nucleotide p 49.5 10 0.00034 36.3 3.2 21 41-61 77-97 (287)
133 1x1o_A Nicotinate-nucleotide p 49.2 10 0.00035 36.2 3.2 21 41-61 74-94 (286)
134 1l5a_A Amide synthase, VIBH; n 49.1 1.9E+02 0.0065 27.9 17.1 29 409-437 118-146 (436)
135 1ax3_A Iiaglc, glucose permeas 48.8 6.9 0.00023 34.2 1.8 28 37-64 92-119 (162)
136 4g22_A Hydroxycinnamoyl-COA sh 48.3 16 0.00055 36.7 4.7 30 409-438 150-179 (439)
137 3l0g_A Nicotinate-nucleotide p 48.1 11 0.00038 36.2 3.3 21 41-61 86-106 (300)
138 2b7n_A Probable nicotinate-nuc 47.6 13 0.00045 35.2 3.7 21 41-61 60-80 (273)
139 3gnn_A Nicotinate-nucleotide p 46.9 12 0.0004 36.0 3.2 21 41-61 88-108 (298)
140 1o4u_A Type II quinolic acid p 46.0 9.6 0.00033 36.4 2.5 21 41-61 73-93 (285)
141 3it5_A Protease LASA; metallop 45.5 8.7 0.0003 34.1 2.0 25 38-62 80-104 (182)
142 3paj_A Nicotinate-nucleotide p 45.4 13 0.00043 36.2 3.2 22 40-61 109-130 (320)
143 3cdx_A Succinylglutamatedesucc 44.8 25 0.00086 34.4 5.4 39 61-100 262-300 (354)
144 1qap_A Quinolinic acid phospho 44.4 13 0.00046 35.6 3.2 22 40-61 86-107 (296)
145 2tpt_A Thymidine phosphorylase 44.3 19 0.00065 36.5 4.5 41 61-101 335-406 (440)
146 1uou_A Thymidine phosphorylase 42.5 32 0.0011 35.2 5.9 42 60-101 366-436 (474)
147 2jbm_A Nicotinate-nucleotide p 38.7 15 0.00052 35.2 2.6 18 81-98 76-93 (299)
148 3h5q_A PYNP, pyrimidine-nucleo 37.9 15 0.00051 37.3 2.5 31 34-64 374-404 (436)
149 1zko_A Glycine cleavage system 36.4 22 0.00074 30.0 2.9 34 68-101 38-72 (136)
150 3tuf_B Stage II sporulation pr 34.9 18 0.0006 33.8 2.3 18 81-98 136-153 (245)
151 2hsi_A Putative peptidase M23; 34.7 18 0.00062 34.4 2.4 21 80-100 232-252 (282)
152 1qwy_A Peptidoglycan hydrolase 34.2 19 0.00065 34.4 2.4 21 80-100 239-259 (291)
153 2vsq_A Surfactin synthetase su 33.5 4.6E+02 0.016 29.9 14.4 148 269-437 251-426 (1304)
154 1brw_A PYNP, protein (pyrimidi 33.2 25 0.00084 35.6 3.2 30 35-64 372-401 (433)
155 2dsj_A Pyrimidine-nucleoside ( 32.9 24 0.00084 35.5 3.1 30 35-64 364-393 (423)
156 2hsi_A Putative peptidase M23; 32.7 41 0.0014 31.9 4.6 15 66-80 190-204 (282)
157 1uou_A Thymidine phosphorylase 31.6 27 0.00091 35.8 3.2 27 38-64 410-436 (474)
158 4etm_A LMPTP, low molecular we 31.5 32 0.0011 30.0 3.3 33 137-173 67-99 (173)
159 1hpc_A H protein of the glycin 29.4 60 0.002 27.0 4.5 33 69-101 30-63 (131)
160 3nyy_A Putative glycyl-glycine 28.8 25 0.00087 32.8 2.3 20 81-100 183-202 (252)
161 2gu1_A Zinc peptidase; alpha/b 27.7 53 0.0018 32.1 4.5 22 79-100 283-304 (361)
162 1baz_A ARC repressor; transcri 26.5 1.3E+02 0.0043 20.7 5.1 47 237-291 6-52 (53)
163 1q9j_A PAPA5, polyketide synth 26.4 49 0.0017 32.0 4.1 28 410-437 117-144 (422)
164 3tuf_B Stage II sporulation pr 26.0 95 0.0033 28.7 5.7 25 38-62 130-154 (245)
165 3c2e_A Nicotinate-nucleotide p 25.7 28 0.00097 33.2 2.1 19 81-99 72-96 (294)
166 2qj8_A MLR6093 protein; struct 25.5 60 0.002 31.2 4.4 34 66-100 257-290 (332)
167 2vsq_A Surfactin synthetase su 25.3 7.9E+02 0.027 27.9 17.5 28 410-437 140-167 (1304)
168 2jgp_A Tyrocidine synthetase 3 25.2 5E+02 0.017 25.6 17.1 34 409-442 476-513 (520)
169 2lmc_B DNA-directed RNA polyme 25.1 8.8 0.0003 29.7 -1.4 16 43-58 67-82 (84)
170 2tpt_A Thymidine phosphorylase 24.8 25 0.00086 35.6 1.6 30 35-64 377-406 (440)
171 2gu1_A Zinc peptidase; alpha/b 24.5 34 0.0012 33.5 2.4 25 39-63 280-304 (361)
172 3nyy_A Putative glycyl-glycine 24.4 1.1E+02 0.0036 28.5 5.7 17 44-60 183-199 (252)
173 1jf8_A Arsenate reductase; ptp 24.1 51 0.0017 27.2 3.1 33 137-173 43-75 (131)
174 1yw4_A Succinylglutamate desuc 24.0 18 0.00061 35.3 0.3 40 41-80 275-319 (341)
175 3csq_A Morphogenesis protein 1 23.3 22 0.00077 34.5 0.8 20 42-61 250-269 (334)
176 3lu0_D DNA-directed RNA polyme 22.5 20 0.0007 41.2 0.4 23 43-65 1107-1131(1407)
177 1onl_A Glycine cleavage system 21.7 62 0.0021 26.8 3.2 33 69-101 30-63 (128)
178 3a7l_A H-protein, glycine clea 21.2 64 0.0022 26.7 3.2 33 69-101 31-64 (128)
179 2cwd_A Low molecular weight ph 21.2 58 0.002 27.8 3.0 33 136-173 52-84 (161)
180 3rh0_A Arsenate reductase; oxi 20.2 72 0.0025 27.0 3.3 34 136-173 60-93 (148)
181 2gi4_A Possible phosphotyrosin 20.1 49 0.0017 28.2 2.3 33 136-172 49-81 (156)
182 2fek_A Low molecular weight pr 20.1 67 0.0023 27.8 3.2 34 136-173 63-96 (167)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=2.2e-93 Score=736.10 Aligned_cols=411 Identities=35% Similarity=0.590 Sum_probs=39.5
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 103 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~ 103 (447)
++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+.+++.
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~ 82 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYE 82 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999865443
Q ss_pred CCCCC--C--CCC--CCC-CCCCCC----CCCC--CCC-CcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHH
Q 013218 104 VPTPS--S--DVL--ESV-KPPGSE----NSPD--SKL-NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED 169 (447)
Q Consensus 104 ~~~~~--~--~~~--~~~-~~~~~~----~~~~--~~~-~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 169 (447)
..... . .++ +.+ ..+... .++. ... ......++++||+|||||+|+||||+.|+||||+|||+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~D 162 (428)
T 3dva_I 83 NMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKED 162 (428)
T ss_dssp ---------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTTT
T ss_pred ccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHHH
Confidence 21110 0 000 000 000000 0000 000 01112357899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeee
Q 013218 170 VLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN 248 (447)
Q Consensus 170 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vD 248 (447)
|++|+...... .+..... . ....+ ..+. ........+++|++++||.||++|.+|+ ++||||++.+||
T Consensus 163 V~~~~~~~~~~-~~~~~~~-~--~~~~~----~~~~---~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evD 231 (428)
T 3dva_I 163 IDAFLAGGAKP-APAAAEE-K--AAPAA----AKPA---TTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEAD 231 (428)
T ss_dssp TTTTSCC-------------------------------------------------------------------------
T ss_pred HHHHhhccccc-ccccccc-c--cccCC----CCcc---ccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEe
Confidence 99997432111 0100000 0 00000 0000 0001123578999999999999999995 899999999999
Q ss_pred chHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccC
Q 013218 249 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQ 328 (447)
Q Consensus 249 vt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~ 328 (447)
||+|+++|+++|+..+..|.++||++||+||+++||++||+||++|++++++|++|+++|||+||++++||++|+|++++
T Consensus 232 vt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~ 311 (428)
T 3dva_I 232 VTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHAD 311 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCC
Confidence 99999999999876666788999999999999999999999999998754589999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcE
Q 013218 329 SLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPI 408 (447)
Q Consensus 329 ~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~ 408 (447)
+++|.+|+++++++++++|+|+|.++|+++|||||||+||+|+.+|+||||+||+|||++|++.++|++ .||++++|++
T Consensus 312 ~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~-~~g~i~~r~~ 390 (428)
T 3dva_I 312 RKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPM 390 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEE-ECCEEEEeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 5889999999
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~ 446 (447)
|+|||+||||+|||+|+++||+.|+++||||..||+++
T Consensus 391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~ 428 (428)
T 3dva_I 391 LALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLMEA 428 (428)
T ss_dssp --------------------------------------
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 99999999999999999999999999999999999875
No 2
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=9.6e-62 Score=469.83 Aligned_cols=233 Identities=47% Similarity=0.811 Sum_probs=221.6
Q ss_pred CCceecCchHHHHHHHHHHHhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEE
Q 013218 215 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 294 (447)
Q Consensus 215 ~~~~~~~s~~rk~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~ 294 (447)
..+++|++++||.||++|.+|+++||||++.++|+|+|+++|+++|+.....|.++||++|++||+++||++||+||++|
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~ 109 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASV 109 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEEE
T ss_pred CcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEEE
Confidence 46789999999999999999989999999999999999999999875333457899999999999999999999999999
Q ss_pred ccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCccc
Q 013218 295 NEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFG 374 (447)
Q Consensus 295 ~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~ 374 (447)
+++++++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|+++|||||||+||+|+.+|
T Consensus 110 ~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~~ 189 (262)
T 2ii3_A 110 DENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYA 189 (262)
T ss_dssp CTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSCE
T ss_pred eCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccce
Confidence 87645899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcCC
Q 013218 375 APLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 447 (447)
Q Consensus 375 ~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~~ 447 (447)
+|||||||+|||++|++.++|++++||+++++++|+|||+||||++||+++++||+.|+++||+|..||++++
T Consensus 190 tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~~~~ 262 (262)
T 2ii3_A 190 KPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 262 (262)
T ss_dssp ECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHHHCC
T ss_pred ECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHhhcC
Confidence 9999999999999999999999966789999999999999999999999999999999999999999998864
No 3
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=5.1e-60 Score=454.13 Aligned_cols=222 Identities=32% Similarity=0.546 Sum_probs=213.1
Q ss_pred cCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccC-
Q 013218 220 PLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE- 297 (447)
Q Consensus 220 ~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~- 297 (447)
|++++||.||++|.+|+ ++||||++.+||+|+|+++|+++|+ .|.++||++|++||+++||++||+||++|+++
T Consensus 18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~----~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~ 93 (250)
T 3l60_A 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS----AAPEITPFALTLRLLVIALKHNVILNSTWVDSG 93 (250)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT----TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTT
T ss_pred CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccC
Confidence 99999999999999996 8999999999999999999999864 46799999999999999999999999999865
Q ss_pred -CcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCccccc
Q 013218 298 -SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAP 376 (447)
Q Consensus 298 -~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~p 376 (447)
++++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+|++|+.+|+|
T Consensus 94 ~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftp 173 (250)
T 3l60_A 94 EGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVP 173 (250)
T ss_dssp TSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCC
T ss_pred CCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEe
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218 377 LLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446 (447)
Q Consensus 377 ii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~ 446 (447)
||||||+|||++|++.++|++. ||++++|++|+|||+||||++||+++++||+.|+++||+|+.|+.++
T Consensus 174 Iinppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~~~~ 242 (250)
T 3l60_A 174 VINHPEAAILGLGAIKPRPVVV-GGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242 (250)
T ss_dssp CCCTTCSEEEEECCCEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTTC
T ss_pred eeCCCCceEEEecceEEEeEEE-CCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHhCcc
Confidence 9999999999999999999995 78999999999999999999999999999999999999999988764
No 4
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=3.1e-60 Score=455.25 Aligned_cols=229 Identities=26% Similarity=0.445 Sum_probs=216.8
Q ss_pred CCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218 215 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 293 (447)
Q Consensus 215 ~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~ 293 (447)
..+++|++++||.|+++|.+|+ ++||||++.++|+|+|+++|+++|+.....|.++||+++++||+++||++||+||++
T Consensus 14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 3467899999999999999995 899999999999999999999987643345789999999999999999999999999
Q ss_pred EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218 294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 373 (447)
Q Consensus 294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~ 373 (447)
|+++++++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ 173 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA 173 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccc
Confidence 98654589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
|+|+|||||+|||++|++.++|++. ||+++++++|+|||+||||++||+++++||+.|+++||+|+.||+
T Consensus 174 ~tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 243 (243)
T 1dpb_A 174 FTPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 (243)
T ss_dssp CCCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred eECccCCCCCeEEEccccEEEEEEE-CCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999995 789999999999999999999999999999999999999998875
No 5
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=1.6e-60 Score=454.56 Aligned_cols=228 Identities=26% Similarity=0.518 Sum_probs=215.7
Q ss_pred CceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218 216 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC 293 (447)
Q Consensus 216 ~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~ 293 (447)
.+++|++++||.||++|.+|+ ++||||++.++|+|+|+++|+++|+.+. ..|.++||+++++||+++||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 356799999999999999995 6999999999999999999999875322 34679999999999999999999999999
Q ss_pred EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218 294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 373 (447)
Q Consensus 294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~ 373 (447)
|+++ ++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus 84 ~~~~--~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~ 161 (233)
T 1scz_A 84 IDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM 161 (233)
T ss_dssp EETT--EEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred EeCC--EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccc
Confidence 9865 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218 374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446 (447)
Q Consensus 374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~ 446 (447)
|+|||||||+|||++|++.++|++. ||+++++++|+|||+||||++||+++++||+.|+++||+|..||+++
T Consensus 162 ~tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~~~ 233 (233)
T 1scz_A 162 STPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233 (233)
T ss_dssp CCCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred eEcccCCCCcEEEEccccEEEEEEE-CCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 9999999999999999999999995 78999999999999999999999999999999999999999998864
No 6
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=6e-60 Score=455.14 Aligned_cols=228 Identities=29% Similarity=0.482 Sum_probs=215.5
Q ss_pred CCCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccc
Q 013218 214 PDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMN 291 (447)
Q Consensus 214 ~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln 291 (447)
...+++|++++||.||++|.+|+ ++||||++.+||+|+|+++|+++|+.++ ..|.++||++|++||+++||++||+||
T Consensus 16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N 95 (256)
T 3mae_A 16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN 95 (256)
T ss_dssp CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence 35688999999999999999996 8999999999999999999999875432 236799999999999999999999999
Q ss_pred eEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCC
Q 013218 292 SCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGG 371 (447)
Q Consensus 292 ~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~ 371 (447)
++|+++ ++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+||+|+
T Consensus 96 a~~~~~--~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~ 173 (256)
T 3mae_A 96 STWAGD--KIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS 173 (256)
T ss_dssp EEEETT--EEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred hEEecC--EEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCc
Confidence 999865 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 372 KFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 372 ~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
.+|+|+|||||+|||++|++.++|++. +|+++++++|+|||+||||++||+++++||+.|+++||+|+.|..
T Consensus 174 ~~ftpIInppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~~ 245 (256)
T 3mae_A 174 VQSMGIINHPQAAILQVESIVKRPVII-DDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENT 245 (256)
T ss_dssp SEEECCCCTTSSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTTC
T ss_pred cceEcccCCCCceEEEecccEEEEEEE-CCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHHH
Confidence 999999999999999999999999995 689999999999999999999999999999999999999987643
No 7
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=8.3e-59 Score=440.22 Aligned_cols=218 Identities=32% Similarity=0.559 Sum_probs=207.1
Q ss_pred CCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218 215 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 293 (447)
Q Consensus 215 ~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~ 293 (447)
..+++|++++||.||++|.+| +++||||++.++|+|+|+++|+++|+. |.++||+++++||+++||++||+||++
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~----g~kls~~~~~ikA~~~Al~~~P~~N~~ 80 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR----NRKVTVTGFLARIVPSILKQYPYLNAI 80 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT----TCCCCHHHHHHHHHHHHHHHSGGGSBB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHHhCHHhheE
Confidence 457789999999999999998 589999999999999999999998752 779999999999999999999999999
Q ss_pred EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218 294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 373 (447)
Q Consensus 294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~ 373 (447)
|+++++++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus 81 ~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~ 160 (224)
T 3rqc_A 81 YDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIM 160 (224)
T ss_dssp CCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSE
T ss_pred EeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccc
Confidence 98765689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhc
Q 013218 374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQ 445 (447)
Q Consensus 374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~ 445 (447)
|+|+|||||+|||++|++.++|+ |++|+|||+||||++||+++++||+.|+++||+|+.||++
T Consensus 161 ~tpiin~pq~aIl~vG~~~~~p~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~ 223 (224)
T 3rqc_A 161 STPIINYPEVAILGVHRILEREG---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYE 223 (224)
T ss_dssp EECCCCTTBSEEEEECCCEEETT---------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC-
T ss_pred eEeccCCCCceEEEecccEEECC---------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhhc
Confidence 99999999999999999998754 7899999999999999999999999999999999999986
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-59 Score=447.04 Aligned_cols=227 Identities=24% Similarity=0.410 Sum_probs=214.3
Q ss_pred CCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218 215 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 293 (447)
Q Consensus 215 ~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~ 293 (447)
..+++|++++||.||++|.+| +++||||++.++|+|+|+++|+++|+..... .++||+++++||+++||++||+||++
T Consensus 11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~-~kls~~~~~ikAv~~Al~~~P~~Na~ 89 (239)
T 3b8k_A 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGR-SKISVNDFIIKASALACLKVPEANSS 89 (239)
T ss_dssp SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTS-SCCCHHHHHHHHHHHHHHHCCCSCTT
T ss_pred CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHHHHHhChHhhEE
Confidence 356789999999999999999 5899999999999999999999987643332 59999999999999999999999999
Q ss_pred EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218 294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 373 (447)
Q Consensus 294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~ 373 (447)
|+++ ++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|+++|||||||+||+|+++
T Consensus 90 ~~~~--~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ 167 (239)
T 3b8k_A 90 WMDT--VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKN 167 (239)
T ss_dssp SCCC--SSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSS
T ss_pred EECC--EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCcee
Confidence 9864 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEEEecceEEeeEEc-CCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218 374 GAPLLNLPEVAIIAMGRIEKVPRLS-DDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444 (447)
Q Consensus 374 ~~pii~~pq~ail~vG~i~~~p~~~-~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~ 444 (447)
|+|++||||+|||++|++.++|+++ +||+++++++|+|||+||||++||+++++||+.|+++||+|+.||+
T Consensus 168 ftpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 239 (239)
T 3b8k_A 168 FSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 (239)
T ss_dssp CCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred EECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999995 5788999999999999999999999999999999999999998875
No 9
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.9e-46 Score=419.91 Aligned_cols=212 Identities=25% Similarity=0.362 Sum_probs=176.1
Q ss_pred HHHHhcCcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCC--cEEEEcccc
Q 013218 231 TMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES--LEVILKGSH 307 (447)
Q Consensus 231 ~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~--~~i~~~~~v 307 (447)
+|.+|+++||||++.+||||+|+++|+++|+.+. ..|.++||++||+||+++||++||+||++|++++ .+++++++|
T Consensus 1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~v 80 (1113)
T 2xt6_A 1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHT 80 (1113)
T ss_dssp ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSC
T ss_pred ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcc
Confidence 5778889999999999999999999999986432 4578999999999999999999999999998653 279999999
Q ss_pred eEEeEEEcC--CC---eEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCc
Q 013218 308 NIGIAMATQ--HG---LAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPE 382 (447)
Q Consensus 308 ~igiav~~~--~G---l~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq 382 (447)
||||||+++ +| |++|||++++++++.+|++++++++++||+|+|.++|+++|||||||+|++|+.+|+|||||||
T Consensus 81 nigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq 160 (1113)
T 2xt6_A 81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQ 160 (1113)
T ss_dssp CEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTC
T ss_pred cEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCC
Confidence 999999997 66 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecceEEeeEEcCC-----CceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHh
Q 013218 383 VAIIAMGRIEKVPRLSDD-----GNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELL 442 (447)
Q Consensus 383 ~ail~vG~i~~~p~~~~d-----G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~l 442 (447)
+|||++|++.++|++.++ |+++++++|+|||+||||||||+++++||+.|+++||+|+.|
T Consensus 161 ~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w 225 (1113)
T 2xt6_A 161 GAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF 225 (1113)
T ss_dssp SEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred ceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence 999999999999988531 679999999999999999999999999999999999999865
No 10
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=100.00 E-value=3.9e-43 Score=331.55 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=164.9
Q ss_pred HhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEE
Q 013218 234 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM 313 (447)
Q Consensus 234 ~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav 313 (447)
++.++||||++.++|||+|+++|++. ++|++++++||+++||++||+||++|+++ ++++|+++|||+||
T Consensus 26 ~~~~~P~~t~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~v~igiAV 94 (219)
T 1q23_A 26 QSVAQCTYNQTVQLDITAFLKTVKKN---------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWDSVHPCYTV 94 (219)
T ss_dssp TTTTCEEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESCCEEEEEE
T ss_pred cCCCCcEEEEEEEEEhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhChHhhEEEECC--EEEEecccCeEEEE
Confidence 45689999999999999999999863 89999999999999999999999999854 89999999999999
Q ss_pred -EcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcC-CCCC-CCCCCCeEEEEecCCCCCcccccccCCC-c--eeEEE
Q 013218 314 -ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNP-ADNSGGTITLSNIGAIGGKFGAPLLNLP-E--VAIIA 387 (447)
Q Consensus 314 -~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g-~l~~-~~~~~gtftISnlg~~G~~~~~pii~~p-q--~ail~ 387 (447)
++++||++|++.. +.+++.+|++++++++++||+| +|.+ +|+ ||||||||+||++.+.+.+..++| + ++|++
T Consensus 95 ~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~~~~~~pIi~ 172 (219)
T 1q23_A 95 FHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFT 172 (219)
T ss_dssp EETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCCTTCCSCEEE
T ss_pred EecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCCccceeEEEe
Confidence 9999999999986 6789999999999999999998 6975 888 999999999998655444444433 2 59999
Q ss_pred ecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 013218 388 MGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENP 439 (447)
Q Consensus 388 vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P 439 (447)
+|++.++ +| +.+|||||+||||++||+++|+||+.|+++||+|
T Consensus 173 ~G~~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~ 215 (219)
T 1q23_A 173 MGKYYTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW 215 (219)
T ss_dssp ECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cccEEEE-----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCc
Confidence 9999875 55 7899999999999999999999999999999985
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=1.3e-42 Score=326.71 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=165.9
Q ss_pred HhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEE
Q 013218 234 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM 313 (447)
Q Consensus 234 ~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav 313 (447)
.+.++|||+++.++|||+|+++|++. ++|++++++||+++||++||+||++|+++ ++++|+++|||+||
T Consensus 21 ~~~~~P~~~~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~v~igiAV 89 (213)
T 3cla_A 21 RHRLPCGFSLTSKIDITTLKKSLDDS---------AYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWDSVDPQFTV 89 (213)
T ss_dssp HHTSCCEEEEEEEEECHHHHHHHHTS---------SCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESCCEEEEEE
T ss_pred hCCCCceEEEEEEEEHHHHHHHHHHh---------CCCHHHHHHHHHHHHHhhCHHhhEEEECC--EEEEEeccceeEEE
Confidence 34589999999999999999999752 89999999999999999999999999854 89999999999999
Q ss_pred -EcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcC-CCCC-CCCCCCeEEEEecCCCCCcccccccCCC---ceeEEE
Q 013218 314 -ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNP-ADNSGGTITLSNIGAIGGKFGAPLLNLP---EVAIIA 387 (447)
Q Consensus 314 -~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g-~l~~-~~~~~gtftISnlg~~G~~~~~pii~~p---q~ail~ 387 (447)
++++||++|++.. +.+++.+|++++++++++||+| +|.+ +|++||||||||+||++.+.|..-.+.+ ..+|++
T Consensus 90 f~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~ 168 (213)
T 3cla_A 90 FHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIIT 168 (213)
T ss_dssp EETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEEE
T ss_pred EeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEEE
Confidence 9999999999886 6789999999999999999995 9988 7899999999999998776664433333 258999
Q ss_pred ecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218 388 MGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIEN 438 (447)
Q Consensus 388 vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~ 438 (447)
+|++.++ +| +.+|||||+||||++||+++|+||+.|+++||+
T Consensus 169 ~G~~~~~-----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 169 MAKYQQE-----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp EECCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred eeEEEEE-----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 9999875 56 789999999999999999999999999999998
No 12
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-41 Score=316.19 Aligned_cols=182 Identities=13% Similarity=0.161 Sum_probs=163.6
Q ss_pred hcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEE-
Q 013218 235 AAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM- 313 (447)
Q Consensus 235 s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav- 313 (447)
+.++|||+++.++|||+|+++|++. ++|++++++||+++||+++|+||++|+++ +++++|+++|||+||
T Consensus 24 ~~~~P~~~~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~-~~i~~~~~i~igvAVf 93 (217)
T 2i9d_A 24 HFQNPQLSITSEVECGGARQRAKAA---------GQSFFLHYLYAVLRAANEIPEFRYRIDPD-GRVVLYDTIDMLSPIK 93 (217)
T ss_dssp TCSBCEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHSGGGGEEECTT-SCEEEESCCEEEEEEE
T ss_pred CCCCceEEEEEEEEhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhCHHhheEEcCC-CEEEEecccCeEEEEE
Confidence 4579999999999999999999873 89999999999999999999999999832 379999999999999
Q ss_pred EcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhc-CCCCCC------CCCCCeEEEEecCCCCCcccccccCCC---ce
Q 013218 314 ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKD-NELNPA------DNSGGTITLSNIGAIGGKFGAPLLNLP---EV 383 (447)
Q Consensus 314 ~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~-g~l~~~------~~~~gtftISnlg~~G~~~~~pii~~p---q~ 383 (447)
++++||++|++. ++.+++.+|++++++++++||+ |+|.++ |++||||||||+||++.+.++...+++ ..
T Consensus 94 ~t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~ 172 (217)
T 2i9d_A 94 IKENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNY 172 (217)
T ss_dssp CSTTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSS
T ss_pred ecCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceE
Confidence 999999999986 5678999999999999999998 599885 999999999999999877665444434 35
Q ss_pred eEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHh
Q 013218 384 AIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLI 436 (447)
Q Consensus 384 ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~L 436 (447)
+|+++|++.++ +| +.+|||||+||||++||+++|+||++|+++|
T Consensus 173 PIi~~Gk~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 173 PLLNAGKAIIR-----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp CEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEecceEEEE-----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 89999999875 55 7899999999999999999999999999987
No 13
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.96 E-value=7.6e-31 Score=248.28 Aligned_cols=154 Identities=21% Similarity=0.350 Sum_probs=38.7
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCe-eecccEEEEEecCC
Q 013218 23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLVVGD 101 (447)
Q Consensus 23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~-v~~G~~l~~i~~~~ 101 (447)
.++|+||+||++|.+|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|...+
T Consensus 3 ~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~~ 82 (229)
T 1zy8_K 3 PIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 82 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEeccC
Confidence 46799999999999999999999999999999999999999999999999999999999999997 99999999997543
Q ss_pred CCCCC---CCC-CCCCC-C--CCCCCCCCCC-CCCCc----CcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHH
Q 013218 102 SAVPT---PSS-DVLES-V--KPPGSENSPD-SKLNK----DTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED 169 (447)
Q Consensus 102 ~~~~~---~~~-~~~~~-~--~~~~~~~~~~-~~~~~----~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 169 (447)
+.... +.. ..+.+ . ..+....... ..+.. ....++++||++||||+|+||||+.|+|||++|||+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vRklAre~gVDL~~V~GTGp~GRItk~D 162 (229)
T 1zy8_K 83 EDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 162 (229)
T ss_dssp -----------------------------------------------CBCHHHHHHHHHTTCCSSSSCCCSTTSCBCHHH
T ss_pred ccccccccccccccccccccCCCcccccccccCCCcccccccccccccCChHHHHHHHHcCCCccccCCCCCCCceehHH
Confidence 22110 000 00000 0 0000000000 00000 011356799999999999999999999999999999999
Q ss_pred HHHHHHh
Q 013218 170 VLKYAVQ 176 (447)
Q Consensus 170 V~~~~~~ 176 (447)
|++|++.
T Consensus 163 V~~~~~~ 169 (229)
T 1zy8_K 163 ALKLVQL 169 (229)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999865
No 14
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=140.11 Aligned_cols=84 Identities=20% Similarity=0.434 Sum_probs=78.7
Q ss_pred CCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCee-ecccEEEEE
Q 013218 19 PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIV-KVGETLLKL 97 (447)
Q Consensus 19 ~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v-~~G~~l~~i 97 (447)
+....++++||++|++|.+|+|.+|++++||.|++||+|++||+||+.++|+||++|+|.++++++|+.| ..|++|+.|
T Consensus 3 ~~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i 82 (98)
T 2dnc_A 3 SGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLI 82 (98)
T ss_dssp CCCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEE
T ss_pred CCcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEE
Confidence 3446678999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred ecCCC
Q 013218 98 VVGDS 102 (447)
Q Consensus 98 ~~~~~ 102 (447)
...++
T Consensus 83 ~~~~~ 87 (98)
T 2dnc_A 83 VEEGE 87 (98)
T ss_dssp ECTTS
T ss_pred ecCCC
Confidence 86543
No 15
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.75 E-value=8.1e-18 Score=135.58 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=75.9
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC-eeecccEEEEEecCC
Q 013218 23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD 101 (447)
Q Consensus 23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~-~v~~G~~l~~i~~~~ 101 (447)
.++++||++|+++.+|+|.+|++++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|..|++|+.|...+
T Consensus 5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999 899999999998643
No 16
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.74 E-value=1e-17 Score=136.77 Aligned_cols=80 Identities=40% Similarity=0.746 Sum_probs=76.5
Q ss_pred ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 22 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.+++|+||++|+++.+|+|.+|+|++||.|++||+|++||+||+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998643
No 17
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.73 E-value=1.3e-17 Score=143.43 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=77.1
Q ss_pred CceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC-eeecccEEEEEec
Q 013218 21 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVV 99 (447)
Q Consensus 21 ~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~-~v~~G~~l~~i~~ 99 (447)
...++|+||++|++|.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|+.|..
T Consensus 25 p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~ 104 (128)
T 1y8o_B 25 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104 (128)
T ss_dssp CSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred CcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence 346889999999999999999999999999999999999999999999999999999999999998 8999999999986
Q ss_pred CC
Q 013218 100 GD 101 (447)
Q Consensus 100 ~~ 101 (447)
.+
T Consensus 105 ~~ 106 (128)
T 1y8o_B 105 KE 106 (128)
T ss_dssp SG
T ss_pred Cc
Confidence 54
No 18
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=139.05 Aligned_cols=79 Identities=29% Similarity=0.368 Sum_probs=75.9
Q ss_pred ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC-eeecccEEEEEecC
Q 013218 22 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVG 100 (447)
Q Consensus 22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~-~v~~G~~l~~i~~~ 100 (447)
..++|+||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|..|++|+.|...
T Consensus 6 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~ 85 (108)
T 2dne_A 6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGK 85 (108)
T ss_dssp CCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred cceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 35789999999999999999999999999999999999999999999999999999999999999 89999999999864
No 19
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.70 E-value=5.3e-17 Score=128.25 Aligned_cols=76 Identities=25% Similarity=0.460 Sum_probs=73.9
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999874
No 20
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.66 E-value=2.2e-16 Score=123.98 Aligned_cols=75 Identities=41% Similarity=0.695 Sum_probs=73.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999885
No 21
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.63 E-value=1.7e-17 Score=131.52 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=73.3
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
++++||++|+++.+|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.+..
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999998864
No 22
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.63 E-value=8.4e-16 Score=121.53 Aligned_cols=75 Identities=31% Similarity=0.475 Sum_probs=72.4
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
++++||++|++ +|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 57999999997 9999999999999999999999999999999999999999999999999999999999999864
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.61 E-value=3.4e-15 Score=117.81 Aligned_cols=75 Identities=28% Similarity=0.390 Sum_probs=71.1
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
++++||++|++ + +|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 47899999996 7 999999999999999999999999999999999999999999999999999999999998643
No 24
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.58 E-value=1e-15 Score=121.32 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=73.3
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+++++||++| ++..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.+..|++|+.+...
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 4679999999 6899999999999999999999999999999999999999999999999999999999999998753
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.43 E-value=1.4e-14 Score=115.91 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=67.8
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
++|++|++ |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 35788888 8999999999999999999999999999999999999999999999999999999999998654
No 26
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.37 E-value=2.2e-12 Score=99.45 Aligned_cols=65 Identities=32% Similarity=0.417 Sum_probs=62.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|+|.+|++++||.|++||+|++||++|...+|+||.+|+|.++++++|+.|..|++|+.|...
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 47999999999999999999999999999999999999999999999999999999999998753
No 27
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=103.82 Aligned_cols=64 Identities=17% Similarity=0.379 Sum_probs=61.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.+++ ++|+.|..|++|+.|...
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~ 75 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELD 75 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCC
Confidence 5689999999999999999999999999999999999999999999 999999999999999754
No 28
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=7.2e-12 Score=103.27 Aligned_cols=64 Identities=17% Similarity=0.402 Sum_probs=61.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|. +++++|+.|..|++|+.|...
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~ 87 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELD 87 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCS
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcC
Confidence 4699999999999999999999999999999999999999999 999999999999999999754
No 29
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.29 E-value=8.8e-13 Score=107.53 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=29.1
Q ss_pred eEEEecCCCCCCC----ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 23 IVDVPLAQTGEGI----AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 23 ~~~~~~p~~~~~~----~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..++.+|...+.. ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++.+++|+.|..|++|+.|+
T Consensus 15 ~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 15 TENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 3468899988765 589999999999999999999999999999999999999999999999999999999998763
No 30
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.26 E-value=2.3e-11 Score=94.06 Aligned_cols=63 Identities=29% Similarity=0.381 Sum_probs=60.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|.+|++++||.|++||+|++++++|....|+||.+|+|.++.+++|+.+..|++|+.|+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 469999999999999999999999999999999999999999999999999999999999873
No 31
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.25 E-value=3.6e-12 Score=87.53 Aligned_cols=39 Identities=46% Similarity=0.662 Sum_probs=37.1
Q ss_pred ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHH
Q 013218 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 174 (447)
Q Consensus 136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~ 174 (447)
+.+||++|++|+++||||+.|.|||++|||+++||++|+
T Consensus 1 ~~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 39 (41)
T 2eq9_C 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA 39 (41)
T ss_dssp CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHH
T ss_pred CCCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHh
Confidence 357999999999999999999999999999999999987
No 32
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.25 E-value=2.1e-11 Score=100.29 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=63.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
..|+|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++++|+.|..|++|+.|...+.
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 4799999999999999999999999999999999999999999999999999999999999986544
No 33
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.23 E-value=2.3e-11 Score=94.91 Aligned_cols=63 Identities=29% Similarity=0.372 Sum_probs=60.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|.+|++++||.|++||+|++++++|...+|+||++|+|.++.+++|+.|..|++|+.|+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 468999999999999999999999999999999999999999999999999999999999874
No 34
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.22 E-value=2.1e-11 Score=96.03 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=58.2
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 37 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 37 ~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
.|+|.+ |++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 12 ~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 12 VGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 477776 59999999999999999999999999999999999999999999999999999874
No 35
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.22 E-value=5.1e-12 Score=92.95 Aligned_cols=43 Identities=53% Similarity=0.765 Sum_probs=39.3
Q ss_pred CCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218 134 GGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176 (447)
Q Consensus 134 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~ 176 (447)
.++.+||+||+||+++||||+.|+|||++|||+++||++|++.
T Consensus 6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~ 48 (58)
T 3rnm_E 6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48 (58)
T ss_dssp --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence 3578999999999999999999999999999999999999864
No 36
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.22 E-value=7.1e-12 Score=85.57 Aligned_cols=37 Identities=41% Similarity=0.681 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHH
Q 013218 138 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 174 (447)
Q Consensus 138 asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~ 174 (447)
+||++|++|+++|||++.|.|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence 6999999999999999999999999999999999986
No 37
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=99.21 E-value=4.5e-12 Score=86.59 Aligned_cols=38 Identities=39% Similarity=0.621 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHH
Q 013218 137 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 174 (447)
Q Consensus 137 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~ 174 (447)
++||++|++|+++|||++.|.|||++|||+++||++|+
T Consensus 1 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred CCCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence 36999999999999999999999999999999999876
No 38
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=99.14 E-value=2.7e-11 Score=86.45 Aligned_cols=41 Identities=44% Similarity=0.702 Sum_probs=38.6
Q ss_pred CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHH
Q 013218 135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 175 (447)
Q Consensus 135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~ 175 (447)
.+.+||++|++|+++||||+.|.|||++|||+++||++|+.
T Consensus 6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~ 46 (49)
T 1w85_I 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 (49)
T ss_dssp CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence 46789999999999999999999999999999999999973
No 39
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=99.13 E-value=4.3e-11 Score=89.56 Aligned_cols=42 Identities=45% Similarity=0.632 Sum_probs=39.4
Q ss_pred ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhc
Q 013218 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK 177 (447)
Q Consensus 136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~ 177 (447)
+.+||++|+||+++||||+.|.|||++|||+++||++|+...
T Consensus 5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~~ 46 (62)
T 1w4i_A 5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEET 46 (62)
T ss_dssp SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhcc
Confidence 578999999999999999999999999999999999998653
No 40
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=99.10 E-value=2.4e-11 Score=87.43 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=37.8
Q ss_pred CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHH
Q 013218 135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 174 (447)
Q Consensus 135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~ 174 (447)
...+||.+|+||+++||||+.|.|||++|||+++||++|+
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~ 48 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL 48 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence 4678999999999999999999999999999999999875
No 41
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.10 E-value=1.3e-10 Score=126.34 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=60.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999874
No 42
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=99.08 E-value=1.6e-10 Score=88.42 Aligned_cols=42 Identities=52% Similarity=0.763 Sum_probs=39.6
Q ss_pred CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218 135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176 (447)
Q Consensus 135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~ 176 (447)
.+.++|++|+||+++||||+.|.|||++|||+++||++|+..
T Consensus 15 ~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp SCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence 467899999999999999999999999999999999999865
No 43
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=99.03 E-value=1e-10 Score=87.94 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=39.2
Q ss_pred CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218 135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176 (447)
Q Consensus 135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~ 176 (447)
++.+||++|++|+++||||+.|+|||++|||+++||++|++.
T Consensus 9 ~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 9 RFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 356899999999999999999999999999999999999864
No 44
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.02 E-value=4.1e-10 Score=129.09 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=59.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
.|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 4999999999999999999999999999999999999999999999999999999999987
No 45
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.00 E-value=5.3e-10 Score=127.72 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=61.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+..
T Consensus 1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 36999999999999999999999999999999999999999999999999999999999999753
No 46
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.98 E-value=5.3e-11 Score=129.38 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=0.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+.+
T Consensus 609 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 609 MNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 46999999999999999999999999999999999999999999999999999999999999753
No 47
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.81 E-value=5.5e-09 Score=87.96 Aligned_cols=66 Identities=21% Similarity=0.380 Sum_probs=60.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceee-----------------------------EEeCCCCeEEEEEeeCCCC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATI-----------------------------EITSRYKGKVAQLLHAPGN 86 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~-----------------------------~i~ap~~G~i~~~~v~~g~ 86 (447)
..|+|.+|++++||.|++||+|+++++.++.. .|+||++|+|.++.+++|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 47999999999999999999999999886553 8999999999999999999
Q ss_pred eeecc-cEEEEEecCC
Q 013218 87 IVKVG-ETLLKLVVGD 101 (447)
Q Consensus 87 ~v~~G-~~l~~i~~~~ 101 (447)
.|..| ++|+.|.+.+
T Consensus 88 ~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 88 YVSASTTELVRVTNLN 103 (116)
T ss_dssp EECTTTSCCEEEECSC
T ss_pred EEcCCCcEEEEEECCC
Confidence 99999 9999998644
No 48
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.75 E-value=2.7e-09 Score=115.88 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=60.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 379999999999999999999999999999999999999999999999999999999998763
No 49
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.74 E-value=1.1e-08 Score=88.52 Aligned_cols=62 Identities=21% Similarity=0.393 Sum_probs=55.8
Q ss_pred EEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEE---eeCCCCeee---ccc-EEEEEecCC
Q 013218 40 LLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL---LHAPGNIVK---VGE-TLLKLVVGD 101 (447)
Q Consensus 40 i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~---~v~~g~~v~---~G~-~l~~i~~~~ 101 (447)
|+.+.+ ++||.|++||+||+||+||+..+|.||.+|+|.++ +++.|+.|. .|+ .|+.|...+
T Consensus 47 i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 47 VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD 116 (136)
T ss_dssp EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence 455545 99999999999999999999999999999999999 889999998 888 999998643
No 50
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.68 E-value=1.1e-08 Score=117.21 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=54.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~ 98 (447)
..|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 369999999999999999999999999999999999999999999999999999999999875
No 51
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.27 E-value=8.1e-07 Score=76.04 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=51.3
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC---CCCee---eccc-EEEEEecCC
Q 013218 38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA---PGNIV---KVGE-TLLKLVVGD 101 (447)
Q Consensus 38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~---~g~~v---~~G~-~l~~i~~~~ 101 (447)
|.|+.+.+ ++||.|++||++|+||++|+..+|.||.+|+|.++... ..+.| +-|+ -|+.|...+
T Consensus 36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (128)
T 1onl_A 36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRD 107 (128)
T ss_dssp CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESC
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECC
Confidence 33555555 99999999999999999999999999999999999754 44455 5565 777777543
No 52
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.27 E-value=4.3e-07 Score=78.03 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=50.8
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC---eee---ccc-EEEEEecC
Q 013218 38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN---IVK---VGE-TLLKLVVG 100 (447)
Q Consensus 38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~---~v~---~G~-~l~~i~~~ 100 (447)
|.|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.++..+.++ .|. -|+ -|+.|...
T Consensus 36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~ 106 (131)
T 1hpc_A 36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPT 106 (131)
T ss_dssp CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEES
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEEC
Confidence 44666666 99999999999999999999999999999999999765444 443 344 67777653
No 53
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.25 E-value=1.1e-06 Score=75.25 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=49.7
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCC---Ceee---ccc-EEEEEecC
Q 013218 38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG---NIVK---VGE-TLLKLVVG 100 (447)
Q Consensus 38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g---~~v~---~G~-~l~~i~~~ 100 (447)
|.|+.+.+ ++|+.|++||+||+||++|+..+|.||.+|+|.++....+ +.|. -|+ -|+.|...
T Consensus 37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~ 107 (128)
T 3a7l_A 37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKAS 107 (128)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEES
T ss_pred CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEEC
Confidence 33555555 9999999999999999999999999999999999976544 3444 444 67777653
No 54
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.87 E-value=2.1e-05 Score=80.47 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=57.8
Q ss_pred ceEEEEEEEc-CCCCeecCCCeEEEEEeC------------------------------------------------cee
Q 013218 36 AECELLKWFV-KEGDEIEEFQPLCAVQSD------------------------------------------------KAT 66 (447)
Q Consensus 36 ~~g~i~~w~v-~~Gd~V~~g~~l~~iet~------------------------------------------------K~~ 66 (447)
..|.|.+++| ++||.|++||+|++|++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 4699999998 999999999999999942 124
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|+||++|+|.++.+++|+.|..|++|+.|...
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence 5799999999999999999999999999999753
No 55
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.82 E-value=6.9e-06 Score=79.05 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=57.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K--------------------------------------------------- 64 (447)
..|+|.+++|++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998642
Q ss_pred --------------------eeeEEeCCCCeEEEEEeeCCCCeeecc--cEEEEEecC
Q 013218 65 --------------------ATIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVVG 100 (447)
Q Consensus 65 --------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G--~~l~~i~~~ 100 (447)
....|+||++|+|..+.+.+|+.|..| ++|+.|...
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~ 166 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 166 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecC
Confidence 124799999999999999999999999 589988754
No 56
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.82 E-value=2.4e-05 Score=77.99 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=58.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 65 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~-------------------------------------------------- 65 (447)
..|+|.+++|++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999997532
Q ss_pred --------------------------eeEEeCCCCeEEEEEeeCCCCeeec-ccEEEEEecC
Q 013218 66 --------------------------TIEITSRYKGKVAQLLHAPGNIVKV-GETLLKLVVG 100 (447)
Q Consensus 66 --------------------------~~~i~ap~~G~i~~~~v~~g~~v~~-G~~l~~i~~~ 100 (447)
...|+||++|+|.++.+..|+.|.. |++|+.|...
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL 205 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence 2579999999999999999999999 9999998754
No 57
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.75 E-value=2.7e-05 Score=77.06 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=56.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K--------------------------------------------------- 64 (447)
..|+|.+++|++||.|++||+|+++++..
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 46999999999999999999999998641
Q ss_pred ----------------------------------eeeEEeCCCCeEEEEEeeCCCCeeecccE---EEEEecC
Q 013218 65 ----------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLVVG 100 (447)
Q Consensus 65 ----------------------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G~~---l~~i~~~ 100 (447)
....|+||++|+|.++.+..|+.|..|++ |+.|...
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 190 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecC
Confidence 11459999999999999999999999987 8887653
No 58
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.72 E-value=4.7e-05 Score=64.61 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=47.5
Q ss_pred eEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC
Q 013218 23 IVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83 (447)
Q Consensus 23 ~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~ 83 (447)
+..|-+-++... .-|.|+-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++...
T Consensus 18 ~~~vGITd~Aq~-~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~ 78 (125)
T 3klr_A 18 VGTVGISNFAQE-ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKA 78 (125)
T ss_dssp EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred EEEEeeCHHHHh-hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhh
Confidence 445555444432 2366777766 79999999999999999999999999999999998544
No 59
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.58 E-value=9.1e-05 Score=64.07 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=46.1
Q ss_pred eEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC
Q 013218 23 IVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83 (447)
Q Consensus 23 ~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~ 83 (447)
+..|-+-++... .-|.|+-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus 40 ~~~VGITd~Aq~-~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~ 100 (143)
T 3mxu_A 40 VVTVGITDYAQE-QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA 100 (143)
T ss_dssp EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred EEEEeeCHHHHh-hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 444544444332 2355666655 89999999999999999999999999999999998543
No 60
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.53 E-value=3.5e-05 Score=77.51 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=56.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K--------------------------------------------------- 64 (447)
..|+|.+++|++||.|++||+|++|+...
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999997532
Q ss_pred ------eeeEEeCCCCeEEEEEeeCCCCeeecc--cEEEEEec
Q 013218 65 ------ATIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVV 99 (447)
Q Consensus 65 ------~~~~i~ap~~G~i~~~~v~~g~~v~~G--~~l~~i~~ 99 (447)
....|+||++|+|.++.+++|+.|..| ++|+.|..
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~ 172 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQ 172 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEEC
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEec
Confidence 124799999999999999999999995 89998875
No 61
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.51 E-value=9.5e-05 Score=63.62 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=47.0
Q ss_pred CceEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 21 SGIVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 21 ~~~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
+.+..|-+-++... .-|.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++.
T Consensus 33 ~~~~~VGITd~Aq~-~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN 93 (137)
T 3tzu_A 33 DGPVRVGITSVAVE-ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN 93 (137)
T ss_dssp SSCEEEEECHHHHH-HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred CCEEEEeeCHHHHh-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence 44555555544432 2356666655 899999999999999999999999999999999984
No 62
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.27 E-value=0.00037 Score=60.98 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=38.8
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218 38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81 (447)
Q Consensus 38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~ 81 (447)
|.|+-+.. ++|+.|++||+++.||+.|+..+|.||.+|+|.++.
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN 103 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence 45555544 799999999999999999999999999999999884
No 63
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.01 E-value=3.8e-05 Score=76.80 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=54.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K--------------------------------------------------- 64 (447)
..|+|.+++|++||.|++||+|+++++..
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 46899999999999999999999998642
Q ss_pred ----------------------------------eeeEEeCCCCeEEEEEeeCCCCeeecccE---EEEEe
Q 013218 65 ----------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLV 98 (447)
Q Consensus 65 ----------------------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G~~---l~~i~ 98 (447)
....|+||++|+|.++.+++|+.|..|++ |+.|.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA 189 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence 01349999999999999999999999998 55554
No 64
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.67 E-value=0.00086 Score=54.47 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=42.6
Q ss_pred CCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 54 FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 54 g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
|..+|.++.++....|.||.+|+|.++++++||.|..||+|+.++..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~ 51 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM 51 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEET
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEec
Confidence 55668888888888999999999999999999999999999999853
No 65
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.41 E-value=0.0074 Score=59.66 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=51.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.| +.+.+++.||.|++||+|++|.. .....+|.||.+|+|... ...-.|..|+.|+.|...
T Consensus 265 ~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 265 DG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp CE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred Ce-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence 45 66778999999999999999996 356789999999999775 446788899999998754
No 66
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.28 E-value=0.011 Score=59.06 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=53.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..| +.+..++.||.|++||+|++|+. ++...+|.||.+|+|... .....|..|+.|+.|...
T Consensus 274 ~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 274 RTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMED 339 (354)
T ss_dssp SCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEE
T ss_pred CCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeee
Confidence 345 67888999999999999999997 578899999999999765 578889999999999754
No 67
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.11 E-value=0.0065 Score=45.60 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=30.7
Q ss_pred EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence 378999999999999999999999999999864
No 68
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.11 E-value=0.013 Score=58.69 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=49.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe------CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 40 LLKWFVKEGDEIEEFQPLCAVQS------DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 40 i~~w~v~~Gd~V~~g~~l~~iet------~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
|.+..++.||.|++||+|++|.. .....+|.||.+|+|... ...-.|..|+.|+.|..
T Consensus 300 l~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~--~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 300 MVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH--FASASVHQGTELYKVMT 363 (368)
T ss_dssp EEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE--CSSSEECTTCEEEEEEE
T ss_pred EEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEee
Confidence 56689999999999999999987 457789999999999665 55578999999998864
No 69
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=95.99 E-value=0.0091 Score=44.93 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=32.0
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|.||.+|+|.++++++|+.|..||+|+.++...
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 40 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMK 40 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEeccc
Confidence 46899999999999999999999999999998643
No 70
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.91 E-value=0.0092 Score=45.43 Aligned_cols=35 Identities=34% Similarity=0.458 Sum_probs=32.3
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
...|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence 35789999999999999999999999999999864
No 71
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=95.83 E-value=0.012 Score=51.48 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=52.3
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEE--------------------------------
Q 013218 36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQ-------------------------------- 79 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~-------------------------------- 79 (447)
.+|+|+.+. ++.|.|-. |+.++...++ ..+.||++|+|..
T Consensus 14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~ 89 (154)
T 2gpr_A 14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN 89 (154)
T ss_dssp SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence 579999984 88888766 8999988876 5899999999997
Q ss_pred ---EeeCCCCeeecccEEEEEec
Q 013218 80 ---LLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 80 ---~~v~~g~~v~~G~~l~~i~~ 99 (447)
++|++||.|..||+|+.+..
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEECH
T ss_pred ceEEEEcCCCEEcCCCEEEEECH
Confidence 48999999999999999874
No 72
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.81 E-value=0.0086 Score=52.89 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=52.8
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218 36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 80 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~~------------------------------- 80 (447)
..|+|+.+. ++.|.+-. |+.++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 579999985 78888766 8999988876 58899999999988
Q ss_pred ----eeCCCCeeecccEEEEEec
Q 013218 81 ----LHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 81 ----~v~~g~~v~~G~~l~~i~~ 99 (447)
+|++||.|..||+|+.+..
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEECH
T ss_pred ccEEEEeCcCEECCCCEEEEECH
Confidence 8999999999999999974
No 73
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=95.50 E-value=0.015 Score=48.10 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=31.8
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..|.|+.+|+|.++++++|+.|..|++|+.++..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 5789999999999999999999999999999864
No 74
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=95.49 E-value=0.0096 Score=46.53 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=32.5
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
...|.||.+|+|.++++++|+.|..||+|+.++...
T Consensus 5 ~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 40 (84)
T 2kcc_A 5 PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK 40 (84)
T ss_dssp TTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSS
T ss_pred CceEECCCCEEEEEEECCCCCEECCCCEEEEEEecc
Confidence 346999999999999999999999999999998543
No 75
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=95.30 E-value=0.012 Score=51.92 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=52.5
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218 36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 80 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~~------------------------------- 80 (447)
..|+|+.+ .++.|.+-. |+.++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 57999998 778888766 8999988873 58899999999988
Q ss_pred ----eeCCCCeeecccEEEEEec
Q 013218 81 ----LHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 81 ----~v~~g~~v~~G~~l~~i~~ 99 (447)
+|++||.|..||+|+.+..
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEECH
T ss_pred ccEEEEeCCCEEcCCCEEEEECH
Confidence 8999999999999999974
No 76
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=94.47 E-value=0.032 Score=44.92 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=33.0
Q ss_pred eeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 65 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 65 ~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
....|.|+.+|+|.++++++|+.|..||+|+.|+...
T Consensus 13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~ 49 (99)
T 2ejm_A 13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK 49 (99)
T ss_dssp CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence 3456899999999999999999999999999998643
No 77
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=94.24 E-value=0.088 Score=51.77 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=48.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
..| +....++.|+.|++||+|+++-. ++...+|.||.+|+|.-. ...-.|..|+.|+.|..
T Consensus 264 ~~G-~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 264 SPG-IFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAILAR 328 (332)
T ss_dssp SSE-EEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEEEE
T ss_pred CCe-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEEee
Confidence 345 45577999999999999999964 567789999999999665 45667888888888764
No 78
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=94.15 E-value=0.04 Score=42.25 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=31.8
Q ss_pred eEEeCCCCeEEEEE-------eeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQL-------LHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~-------~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|.||..|++.++ ++++|+.|..||+|+.++...
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k 46 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEecc
Confidence 46899999999998 899999999999999998643
No 79
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=94.08 E-value=0.024 Score=45.25 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=31.7
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
...|.||.+|+|.++++++||.|..||+|+.++..
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence 45689999999999999999999999999999864
No 80
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=93.91 E-value=0.056 Score=51.36 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=39.1
Q ss_pred CCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 47 EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 47 ~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
.|+.-..=..-+.|+.. -...|.++.+|+|.++++++||.|..||+|+.|+.
T Consensus 4 ~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 55 (277)
T 2f1m_A 4 TEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 55 (277)
T ss_dssp ------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred eeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECc
Confidence 34443444455677754 46789999999999999999999999999999975
No 81
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.87 E-value=0.053 Score=49.02 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=28.1
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 80 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~ 80 (447)
..++|++|+.|++||.||+-. .|-+..+|++.+.
T Consensus 21 A~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~ 54 (193)
T 2xha_A 21 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV 54 (193)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred CEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence 367899999999999999864 7888888888543
No 82
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=93.26 E-value=0.044 Score=41.67 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=28.8
Q ss_pred eCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 70 TSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 70 ~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.++.+|+|.++++++||.|..||+|+.++...
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k 42 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDK 42 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESSS
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEccc
Confidence 45789999999999999999999999998643
No 83
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=92.91 E-value=0.12 Score=50.94 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=46.8
Q ss_pred EcCCCCeecCCCeEEEEEeC-ceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 44 FVKEGDEIEEFQPLCAVQSD-KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 44 ~v~~Gd~V~~g~~l~~iet~-K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.++.|+.-..=..-+.|+.+ .-...|.++.+|+|.++++++|+.|..|++|+.|+..
T Consensus 34 ~v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 34 PATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp ECEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred EeeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 35555555555666788875 6778999999999999999999999999999999863
No 84
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=92.79 E-value=0.11 Score=50.71 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=42.5
Q ss_pred EcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 44 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 44 ~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
.++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.|+..
T Consensus 10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 34555544444455677755 466899999999999999999999999999999753
No 85
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=92.52 E-value=0.072 Score=40.70 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=27.9
Q ss_pred CCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 71 SRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 71 ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
++.+|+|.++++++||.|..||+|+.++...
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k 42 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIETDK 42 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEECSS
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence 4579999999999999999999999998643
No 86
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=92.15 E-value=0.13 Score=40.07 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=27.3
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..+|+|.++++++||.|..||+|+.++...
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 46 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIETDX 46 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEECCc
Confidence 468999999999999999999999998654
No 87
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=91.90 E-value=0.19 Score=39.88 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=27.2
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..+|+|.++++++||.|..||+|+.++...
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K 45 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDK 45 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence 468999999999999999999999998654
No 88
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=91.81 E-value=0.19 Score=44.05 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=42.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EeCCCCeEEEEEeeCCC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQLLHAPG 85 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~-i~ap~~G~i~~~~v~~g 85 (447)
.+|.-+-..+.+|+.|.+||.|+-|.|.|.++- ++||++|+|.-+.--++
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 356677888999999999999999999997665 99999999987654444
No 89
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=91.71 E-value=0.11 Score=39.83 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=29.3
Q ss_pred EeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+-++..|.|.++++++||.|..||+|+.++...
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k 42 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDK 42 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCC
Confidence 346789999999999999999999999998653
No 90
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=91.12 E-value=0.19 Score=38.26 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=26.2
Q ss_pred CeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 74 KGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 74 ~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+|+|.++++++||.|..||+|+.++...
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~ 41 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDK 41 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence 9999999999999999999999998654
No 91
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=91.08 E-value=0.19 Score=49.80 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=26.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ 79 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~ 79 (447)
..++|+.|+.|++||.||+-. .|-|..+|+|.+
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~ 93 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 93 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence 468899999999999999964 677777777643
No 92
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.99 E-value=0.24 Score=39.71 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=26.6
Q ss_pred CCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 73 YKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 73 ~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|+|.++++++||.|..||+|+.++...
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K 48 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIETDK 48 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEECSS
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEccc
Confidence 58999999999999999999999998654
No 93
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=90.56 E-value=0.02 Score=44.66 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=31.0
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.+|.+|.-|+|.++++++||.|..||+|+.++...
T Consensus 3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k 37 (85)
T 2k7v_A 3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDK 37 (85)
T ss_dssp SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCC
T ss_pred cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccc
Confidence 46778888999999999999999999999997643
No 94
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=90.23 E-value=0.2 Score=41.00 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=27.0
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
...|+|.++++++||.|..||+|+.|+...
T Consensus 19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K 48 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVETDK 48 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred cccEEEEEEEcCCCCEecCCCEEEEEEcCc
Confidence 358999999999999999999999998653
No 95
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=90.16 E-value=0.2 Score=49.86 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=39.0
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 45 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 45 v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..||+|+.|+.
T Consensus 23 v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 23 LEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp ------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 4444443333445566654 45689999999999999999999999999999975
No 96
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=89.73 E-value=0.26 Score=49.80 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=37.1
Q ss_pred eEEEEEeC-ceeeEEeCCCCeEEEEEee-CCCCeeecccEEEEEecC
Q 013218 56 PLCAVQSD-KATIEITSRYKGKVAQLLH-APGNIVKVGETLLKLVVG 100 (447)
Q Consensus 56 ~l~~iet~-K~~~~i~ap~~G~i~~~~v-~~g~~v~~G~~l~~i~~~ 100 (447)
..+.|+.+ .....|.++.+|+|.+++| ++||.|..||+|+.|...
T Consensus 110 ~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 110 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp EEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred EEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence 44555542 4457799999999999998 999999999999999853
No 97
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=89.21 E-value=0.2 Score=45.28 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=36.0
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEE--------------------------E--eeCCCCeeecccEEE
Q 013218 45 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ--------------------------L--LHAPGNIVKVGETLL 95 (447)
Q Consensus 45 v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~--------------------------~--~v~~g~~v~~G~~l~ 95 (447)
|++|+.|+.||+|+ -...|-|..+|+|.= + +|++||.|..|++|+
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCcc
Confidence 89999999999998 335567777777641 2 788999999999886
No 98
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=87.74 E-value=0.46 Score=40.11 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=26.6
Q ss_pred CCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 73 YKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 73 ~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
.+|+|.++++++||.|..||+|+.|+...
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K 68 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDK 68 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCc
Confidence 57999999999999999999999998654
No 99
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=87.53 E-value=0.13 Score=39.40 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.5
Q ss_pred CCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 71 SRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 71 ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+..+|+|.++++++||.|..||+|+.++...
T Consensus 13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 43 (80)
T 1pmr_A 13 SVADATVATWHKKPGDAVVRDEVLVEIETDK 43 (80)
T ss_dssp CCSCEECCBCCCCTTCCBSSSCCBCBCCSSS
T ss_pred CCccEEEEEEECCCcCEECCCCEEEEEEccc
Confidence 3468999999999999999999999998654
No 100
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=87.26 E-value=0.96 Score=40.38 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=48.0
Q ss_pred ceEEEEEEEcCCCCeec----CCCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218 36 AECELLKWFVKEGDEIE----EFQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 80 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~----~g~~l~~iet~K~~~~i~ap~~G~i~~~------------------------------- 80 (447)
-.|+++.+ -++-|.|= -|+-++..=++ ..|.||++|+|..+
T Consensus 41 v~G~vi~L-~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvLIHIGiDTV~L~G~ 116 (183)
T 3our_B 41 LSGEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKGE 116 (183)
T ss_dssp SCEEEEEG-GGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred cceEEEEc-hhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEEEEecccccccCCc
Confidence 46888865 56667652 38888887665 37899999999887
Q ss_pred ----eeCCCCeeecccEEEEEec
Q 013218 81 ----LHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 81 ----~v~~g~~v~~G~~l~~i~~ 99 (447)
+|++||.|..||+|+.+.-
T Consensus 117 gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 117 GFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp TEEECSCTTCEECTTCEEEEECH
T ss_pred cceEEEeCcCEEcCCCEEEEECH
Confidence 7889999999999999874
No 101
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=87.17 E-value=0.36 Score=36.62 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=25.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
..|+|.++++++|+.|..|++|+.|+..
T Consensus 48 ~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 48 KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 4689999999999999999999999753
No 102
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=87.07 E-value=0.19 Score=49.67 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=43.5
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 45 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 45 v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..||+|+.|+..
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 4445554555556677743 466899999999999999999999999999999754
No 103
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=86.94 E-value=0.78 Score=41.38 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=40.6
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeee
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVK 89 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~ 89 (447)
..++|++||.|++||.||+. |.-+..|-+..+|+|.=-.+.+|.++.
T Consensus 62 a~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~~ 108 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTIT 108 (190)
T ss_dssp CEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTEE
T ss_pred CEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcceE
Confidence 46789999999999999977 789999999999999777777776655
No 104
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=86.83 E-value=0.57 Score=50.63 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=32.8
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
...|.||..|+|.+++|++||.|..||+|+.++...
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 647 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMK 647 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSS
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecC
Confidence 456999999999999999999999999999998654
No 105
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=81.65 E-value=1.2 Score=51.28 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=33.5
Q ss_pred eeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 65 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 65 ~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
....|.||..|+|.+++|++||.|..||+|+.|+...
T Consensus 1166 ~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A 1166 DAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp TCEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETT
T ss_pred CCcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecC
Confidence 3457999999999999999999999999999999754
No 106
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=81.58 E-value=1.2 Score=50.98 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=32.5
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|.||..|+|.+++|++||.|..||+|+.|+...
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK 1112 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMK 1112 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEESSS
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 46999999999999999999999999999999654
No 107
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=81.03 E-value=48 Score=33.17 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=25.3
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhh
Q 013218 410 TVNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 410 ~lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
-+-+++||-++||.-...|+++|.+...
T Consensus 135 ~l~l~~HH~i~Dg~S~~~l~~~l~~~Y~ 162 (493)
T 4hvm_A 135 VLGVVAHQMLLDARSRYMVLGAVWQAYY 162 (493)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEecchhhccHHHHHHHHHHHHHHhC
Confidence 4788999999999999999999998763
No 108
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=79.61 E-value=1 Score=48.84 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=32.4
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|.||..|+|.+++|++||.|..||+|+.++...
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamK 684 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMK 684 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSS
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEeccc
Confidence 56999999999999999999999999999998643
No 109
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=76.73 E-value=1.1 Score=38.93 Aligned_cols=58 Identities=21% Similarity=0.176 Sum_probs=35.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCcee---------eEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDKAT---------IEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~---------~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i 97 (447)
.|+=-+.+|++||+|++||+|+++.-++.. +-+.- .+ ...+....+..+..|+.|..+
T Consensus 87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NG--GKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CS--SCCCSCBCCEEECTTCEEEEE
T ss_pred CCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CC--cceEEEccCceEcCCCEEEEe
Confidence 344455799999999999999999743321 11222 11 112233345667888887765
No 110
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=76.22 E-value=2.4 Score=48.56 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=36.0
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCee
Q 013218 42 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIV 88 (447)
Q Consensus 42 ~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v 88 (447)
.++|++||.|++||.|++. |--+..|-+..+|+|.=..+.+|-++
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~g~t~ 1046 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI 1046 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCBTTTE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeeccCcee
Confidence 5789999999999999988 67788899999998865445555444
No 111
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=75.87 E-value=0.55 Score=50.67 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=0.0
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|.||..|+|.+++|++||.|..||+|+.|+...
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 637 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMK 637 (675)
T ss_dssp -----------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEecc
Confidence 45899999999999999999999999999998653
No 112
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=74.79 E-value=0.97 Score=44.75 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=19.9
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEE
Q 013218 45 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA 78 (447)
Q Consensus 45 v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~ 78 (447)
++.|+.|+.||+|+ -...|-|..||+|.
T Consensus 125 v~~g~~v~~G~vla------k~~aiiaeidG~V~ 152 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS------KNEEYICELDGKIV 152 (352)
T ss_dssp CCTTCEECTTCBSB------SSSSCBCCSCEEEE
T ss_pred cCCCCEEccCcEEe------cCceEEeccceEEE
Confidence 89999999999887 22445555555553
No 113
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=74.08 E-value=2.2 Score=48.93 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=28.5
Q ss_pred eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
..|.||..|+|.++++++||.|..||+|+.++...
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEamK 1130 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMK 1130 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC--
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEccc
Confidence 56999999999999999999999999999998643
No 114
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=68.16 E-value=3 Score=41.09 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=40.6
Q ss_pred EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 43 WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 43 w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
-.++.|+.|++||+|+++- + .++.+|++|.+.- .. .-.|..|+.++.+...
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i~~~ 329 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRHVAIGQRAALMVCE 329 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTTCCTTSEEEEEEEE
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCCCCCCcEEEEEEEE
Confidence 3478999999999999994 4 6889999998754 23 6788899988877643
No 115
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=66.79 E-value=1.2 Score=41.42 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=0.0
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218 72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
-..|+|.+|++++||.|..||+|+.|+...
T Consensus 15 m~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK 44 (229)
T 1zy8_K 15 MEEGNIVKWLKKEGEAVSAGDALCEIETDK 44 (229)
T ss_dssp ------------------------------
T ss_pred CCcEEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 458999999999999999999999998644
No 116
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=64.92 E-value=3.7 Score=36.59 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=22.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
|+--+++|++||+|++||+|+++.-++
T Consensus 115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 115 GEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CccceEEEeCcCEEcCCCEEEEECHHH
Confidence 455689999999999999999997443
No 117
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=62.57 E-value=1.6 Score=44.42 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 36 AECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
.+|+|.++++++||.|..|++|++|+.+.
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp -----------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 67999999999999999999999998654
No 118
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=62.44 E-value=17 Score=37.68 Aligned_cols=173 Identities=9% Similarity=-0.046 Sum_probs=0.0
Q ss_pred echHHHHHHHHhcccCCCCCC---ccchHHHHHHHHHHHHhcCcc-----------------cceEEccCCcEEEEcccc
Q 013218 248 NCDALVKLKASFQNNNSDPNI---KHTFLPSLIKSLSMAMSKYPF-----------------MNSCFNEESLEVILKGSH 307 (447)
Q Consensus 248 Dvt~l~~~~k~~~~~~~~~g~---~~s~~~~~vkAv~~al~~~P~-----------------ln~~~~~~~~~i~~~~~v 307 (447)
+...|.+.+|+ . ++|+++++.-|++.++.++.. +|.++.... ..-.|..+
T Consensus 288 ~t~~L~~~ck~---------~~~~g~Tvt~~l~Aa~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~l~~~~-~~n~~~~~ 357 (519)
T 3fot_A 288 ESIDIVKAVKT---------RLGPGFTISHLTQAAIVLALLDHLKPNDLSDDEVFISPTSVDGRRWLREDI-ASNFYAMC 357 (519)
T ss_dssp HHHHHHHHHHH---------HTCTTCCHHHHHHHHHHHHHHHHC----CCTTCCEEEEEEEECGGGBCHHH-HTSCCSCC
T ss_pred HHHHHHHHHHh---------cCCCCeeHHHHHHHHHHHHHHhhcCCcccCCCccEEEEeeeeccccCCCcc-ccccccee
Q ss_pred eEEeEEEcCCCeEeeeeeccCCCC-----HHHHHHHHHHHHHHhhcCC-------------------CCCCCCCCCeEEE
Q 013218 308 NIGIAMATQHGLAVPNIKNVQSLS-----ILEITKELSRLQQLAKDNE-------------------LNPADNSGGTITL 363 (447)
Q Consensus 308 ~igiav~~~~Gl~~pvI~~a~~~s-----l~~i~~~~~~l~~~ar~g~-------------------l~~~~~~~gtftI 363 (447)
..++.+..+.- ...+.....+.. +.++++.+++.-..-..+. ..+......+..+
T Consensus 358 ~~~~~~~v~~i-~~~~~~~~~~e~~~~~~~~~~ar~l~~~y~~~~~np~i~~l~~~~k~~~~~l~~~~~~~~~~~~tp~l 436 (519)
T 3fot_A 358 QTAAVVRIENL-KSITVSHKDEKELQVRALESACRNIKKSYRQWLENPFLQALGLRVHNFEASYLHAKPIPFEGEANPLF 436 (519)
T ss_dssp EEEEEEEECCG-GGGCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHCSSCCCSBCCCEE
T ss_pred eeeeeeEecCc-cccccccchhhhhhHhHHHHHHHHHHHHhhcccCCchHHHhHHHHHHHHHHHhcccCCCCCCccCccc
Q ss_pred EecCCCC--Cccccc--------ccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHH
Q 013218 364 SNIGAIG--GKFGAP--------LLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWK 433 (447)
Q Consensus 364 Snlg~~G--~~~~~p--------ii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~ 433 (447)
||+|.+. +..-.. + .=+-.-+++......+.+ +-...+-.|.+++.||-...|...+-.||+.++
T Consensus 437 SslG~vd~~lp~~y~~~~~~~~~~--~V~~~~~~~~~~~~~~~~---~~~Tf~g~L~l~~~yn~a~~~~e~v~~~l~~v~ 511 (519)
T 3fot_A 437 ISDGINERFIPHEIKQTATGENVL--SVESIDFVVNQSLPYLAI---RLDSWRDASTLNIIYNDANYTEAEVQKYLQSIV 511 (519)
T ss_dssp EEEEEGGGTSCSEEEETTTTEEEE--EEEEEEEEECCCSSSCEE---EEEEETTEEEEEEEEETTTCCHHHHHHHHHHHH
T ss_pred ccCCccccccchhhccccCCCCce--EEEEEEEEccccCCceEE---EEEEECCEEEEEEEeccccCCHHHHHHHHHHHH
Q ss_pred HHh
Q 013218 434 QLI 436 (447)
Q Consensus 434 ~~L 436 (447)
+.|
T Consensus 512 ~~L 514 (519)
T 3fot_A 512 EFM 514 (519)
T ss_dssp HHH
T ss_pred HHH
No 119
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=58.49 E-value=23 Score=31.34 Aligned_cols=68 Identities=9% Similarity=-0.145 Sum_probs=45.3
Q ss_pred CCCCceEEEecCCC-----C---CCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeee
Q 013218 18 LPASGIVDVPLAQT-----G---EGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVK 89 (447)
Q Consensus 18 ~~~~~~~~~~~p~~-----~---~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~ 89 (447)
...+.=++|..|.= + -...+|+|+..- | -.++|+.+.....+-+.- .++.|++||.|.
T Consensus 29 ~~~H~GiDi~~~~G~~g~~gtpV~A~~~G~V~~~~---------G-~~V~I~H~~g~~t~Y~HL----~~i~V~~G~~V~ 94 (182)
T 3it5_A 29 GYPYSSFDASYDWPRWGSATYSVVAAHAGTVRVLS---------R-CQVRVTHPSGWATNYYHM----DQIQVSNGQQVS 94 (182)
T ss_dssp SSSCCEEEEESSCCCTTSCCCEEECSSSEEEEEEE---------T-TEEEEECTTSEEEEEESE----ESCCCCTTCEEC
T ss_pred CcceecEEecCCCCCCCCCCCEEEeccCEEEEEEC---------C-eEEEEEECCcEEEEEEcC----CccccCCCCEEc
Confidence 35567788887721 1 145678888764 3 245566555444444433 356799999999
Q ss_pred cccEEEEEec
Q 013218 90 VGETLLKLVV 99 (447)
Q Consensus 90 ~G~~l~~i~~ 99 (447)
.||+|+.+..
T Consensus 95 ~Gq~IG~vG~ 104 (182)
T 3it5_A 95 ADTKLGVYAG 104 (182)
T ss_dssp TTCEEEEECS
T ss_pred CCCEEEeecC
Confidence 9999999975
No 120
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=58.41 E-value=7.2 Score=38.64 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=30.6
Q ss_pred ceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218 64 KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 99 (447)
Q Consensus 64 K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~ 99 (447)
+...-++||.+|.+. ..++.|+.|..||+|+.|.+
T Consensus 288 ~~~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 288 KNYRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp GGEEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEEC
T ss_pred CCcEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEEc
Confidence 344568999999995 68999999999999999986
No 121
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=56.95 E-value=9.2 Score=37.23 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=30.4
Q ss_pred ceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 64 KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 64 K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
....-|.||.+|.+.- .++.|+.|..||+|+.|...
T Consensus 255 ~~~~~v~A~~~Gl~~~-~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 255 DGDCYLFSEHDGLFEI-MIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp CSCCCEECSSCEEEEE-SSCTTCEECTTCEEEEEECS
T ss_pred CCcEEEeCCCCeEEEE-cCCCCCEEcCCCEEEEEEcC
Confidence 3345689999998854 79999999999999999874
No 122
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=55.73 E-value=12 Score=32.75 Aligned_cols=42 Identities=19% Similarity=0.052 Sum_probs=34.2
Q ss_pred eecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218 50 EIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 102 (447)
Q Consensus 50 ~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~ 102 (447)
.+++|+.|+.++ .+|+-.-..+.+|++|..|+.||.+.+...
T Consensus 95 ~lkkGt~L~lvp-----------aeG~~V~~i~~~G~rV~kgd~lA~i~T~KG 136 (169)
T 3d4r_A 95 YLKAGTKLISVP-----------AEGYKVYPIMDFGFRVLKGYRLATLESKKG 136 (169)
T ss_dssp EECTTCBCEEEE-----------ECSSEEEECCCCSEEECTTCEEEEEECTTC
T ss_pred EEcCCCEEEEEE-----------eCceEEEEEcCcCcEeccCCeEEEEEecCc
Confidence 456777777775 468777888999999999999999987544
No 123
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=55.32 E-value=14 Score=37.29 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=34.2
Q ss_pred EEeCceeeEEeCCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecCC
Q 013218 60 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 60 iet~K~~~~i~ap~~G~i~~~-------------------------------~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+-..+ ..+|.|+.+|+|..+ +.+.||.|..|++|+.|....
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 34566 788999999999777 777999999999999998643
No 124
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=54.82 E-value=7.1 Score=34.06 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=19.5
Q ss_pred EEEEcCCCCeecCCCeEEEEEeC
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
-+.+|++||+|++||+|+++.-+
T Consensus 96 F~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 96 FKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp EEECSCTTCEECTTCEEEEECHH
T ss_pred cEEEEeCcCEECCCCEEEEECHH
Confidence 34589999999999999999743
No 125
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=54.39 E-value=16 Score=36.98 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=35.3
Q ss_pred EEeCceeeEEeCCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecCC
Q 013218 60 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 60 iet~K~~~~i~ap~~G~i~~~-------------------------------~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+...+-..+|.|+.+|+|..+ +.+.||.|..|++|+.|....
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 345677788999999999877 777999999999999998654
No 126
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=52.82 E-value=12 Score=37.46 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=27.4
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 438 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~ 438 (447)
+-|+++++|.++||.-+..|++.+.++...
T Consensus 152 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg 181 (421)
T 2bgh_A 152 TAIGVNLSHKIADVLSLATFLNAWTATCRG 181 (421)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEeeEEechHHHHHHHHHHHHHHhcC
Confidence 668999999999999999999999998763
No 127
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=51.64 E-value=13 Score=37.33 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=27.8
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 438 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~ 438 (447)
+-|+++++|.++||.-+..|++.+.++...
T Consensus 148 ~~lg~~~~H~v~Dg~g~~~Fl~awa~~~rg 177 (451)
T 2rkv_A 148 LILTVNGQHGAMDMVGQDAVIRLLSKACRN 177 (451)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred eeeeeeehhccccHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999998875
No 128
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=51.34 E-value=11 Score=36.10 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 013218 39 ELLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 39 ~i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
.-++|++++|+.|++||+|++++
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~ 93 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLE 93 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEE
Confidence 34678888888888888888886
No 129
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=51.16 E-value=12 Score=37.72 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=27.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhh
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
+-|+++++|.++||.-+..|++.+.++..
T Consensus 157 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r 185 (453)
T 2xr7_A 157 ISIGFTNHHVAGDGATIVKFVRAWALLNK 185 (453)
T ss_dssp EEEEEEECTTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeeeeechhHHHHHHHHHHHHhh
Confidence 67899999999999999999999999987
No 130
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=50.69 E-value=13 Score=37.39 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=27.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhh
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
+-|+++++|.++||.-+..|++.+.++..
T Consensus 162 ~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r 190 (454)
T 2e1v_A 162 IAIGITNHHCLGDASTRFCFLKAWTSIAR 190 (454)
T ss_dssp EEEEEEECGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeeeecchhHHHHHHHHHHHHhc
Confidence 67899999999999999999999999987
No 131
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=49.90 E-value=18 Score=36.70 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=32.4
Q ss_pred eCceeeEEeCCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEe
Q 013218 62 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 62 t~K~~~~i~ap~~G~i~~~-------------------------------~v~~g~~v~~G~~l~~i~ 98 (447)
..+-..+|.|+.+|+|..| +.+.||.|..|++|+.|.
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 4566788999999999888 667999999999999998
No 132
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=49.52 E-value=10 Score=36.29 Aligned_cols=21 Identities=5% Similarity=0.431 Sum_probs=15.6
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~ 97 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELK 97 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEE
Confidence 467777777777777777776
No 133
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=49.22 E-value=10 Score=36.24 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.6
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~ 94 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVR 94 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEE
Confidence 667888888888888888776
No 134
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=49.13 E-value=1.9e+02 Score=27.86 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=26.1
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhh
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
.-+-+++||-++||.-...|+++|.++..
T Consensus 118 ~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~ 146 (436)
T 1l5a_A 118 HLIYTRAHHIVLDGYGMMLFEQRLSQHYQ 146 (436)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeehhheecHhHHHHHHHHHHHHHH
Confidence 34789999999999999999999998875
No 135
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=48.83 E-value=6.9 Score=34.20 Aligned_cols=28 Identities=39% Similarity=0.419 Sum_probs=22.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 37 ECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
.|+=-+.+|++||+|++||+|+++.-++
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 92 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp TTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred CCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 4444566999999999999999997443
No 136
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=48.25 E-value=16 Score=36.66 Aligned_cols=30 Identities=23% Similarity=0.601 Sum_probs=27.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 438 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~ 438 (447)
+-|+++++|.++||.-...|++.+.++...
T Consensus 150 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~rg 179 (439)
T 4g22_A 150 VSLGVGMRHHAADGFSGLHFINSWSDMARG 179 (439)
T ss_dssp EEEEEEECTTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEeeeccCcHHHHHHHHHHHHHHhCC
Confidence 668999999999999999999999998754
No 137
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=48.13 E-value=11 Score=36.18 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=16.0
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 86 v~~~~~dG~~v~~g~~v~~i~ 106 (300)
T 3l0g_A 86 YEIHKKDGDITGKNSTLVSGE 106 (300)
T ss_dssp EEECCCTTCEECSSCEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEE
Confidence 577777777777777777776
No 138
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=47.65 E-value=13 Score=35.15 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=13.1
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|.+++|+.|.+||+|++|+
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~ 80 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIR 80 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEE
Confidence 446666666666666666665
No 139
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=46.90 E-value=12 Score=36.05 Aligned_cols=21 Identities=24% Similarity=0.705 Sum_probs=14.7
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|.+||+|++|+
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~ 108 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELR 108 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 467777777777777777765
No 140
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=46.02 E-value=9.6 Score=36.40 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=13.5
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~ie 61 (447)
++|++++|+.|++||+|++++
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~ 93 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIE 93 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEE
Confidence 456666666666666666665
No 141
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=45.50 E-value=8.7 Score=34.14 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=21.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQS 62 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet 62 (447)
+-+.++.|++||.|++||+|+.+..
T Consensus 80 ~HL~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 80 YHMDQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp ESEESCCCCTTCEECTTCEEEEECS
T ss_pred EcCCccccCCCCEEcCCCEEEeecC
Confidence 4466788999999999999999974
No 142
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=45.35 E-value=13 Score=36.17 Aligned_cols=22 Identities=32% Similarity=0.827 Sum_probs=15.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 013218 40 LLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 40 i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
-++|.+++|+.|.+||+|++|+
T Consensus 109 ~v~~~~~dG~~v~~g~~l~~v~ 130 (320)
T 3paj_A 109 SIEWHVQDGDTLTPNQTLCTLT 130 (320)
T ss_dssp EEEESSCTTCEECTTCEEEEEE
T ss_pred EEEEEeCCCCEecCCCEEEEEE
Confidence 3567777777777777777775
No 143
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=44.83 E-value=25 Score=34.36 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=31.6
Q ss_pred EeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 61 QSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 61 et~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+..+...-++|+.+|.+ +..++.|+.|..||+|+.+...
T Consensus 262 ~~~~~~~~v~A~~~G~~-~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 262 MVREADAYVMAPRTGLF-EPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp ECCCGGGEEECSSCEEE-EESCCTTCEECTTSEEEEEECT
T ss_pred eecCCcEEEECCCCEEE-EEeCCCCCEeCCCCEEEEEECC
Confidence 33345566899999965 6678999999999999999864
No 144
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=44.39 E-value=13 Score=35.58 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=17.2
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 013218 40 LLKWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 40 i~~w~v~~Gd~V~~g~~l~~ie 61 (447)
-++|.+++|+.|..|++|++|+
T Consensus 86 ~v~~~~~dG~~v~~g~~~~~v~ 107 (296)
T 1qap_A 86 RLTWHVDDGDAIHANQTVFELQ 107 (296)
T ss_dssp EEEESCCTTCEECTTCEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3678888888888888888776
No 145
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=44.31 E-value=19 Score=36.52 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=34.5
Q ss_pred EeCceeeEEeCCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecCC
Q 013218 61 QSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 61 et~K~~~~i~ap~~G~i~~~-------------------------------~v~~g~~v~~G~~l~~i~~~~ 101 (447)
...+-..+|.|+.+|+|..+ +.+.||.|..|++|+.|....
T Consensus 335 ~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 335 PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 34667788999999999877 677999999999999998643
No 146
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=42.48 E-value=32 Score=35.18 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=34.1
Q ss_pred EEeCceeeEEeCCCCeEEEE-----------------------------EeeCCCCeeecccEEEEEecCC
Q 013218 60 VQSDKATIEITSRYKGKVAQ-----------------------------LLHAPGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 60 iet~K~~~~i~ap~~G~i~~-----------------------------~~v~~g~~v~~G~~l~~i~~~~ 101 (447)
+-..+-..+|.|+.+|+|.. ++.+.||.|..|++|+.|....
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCC
Confidence 34566778899999999954 5778999999999999998653
No 147
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=38.71 E-value=15 Score=35.19 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=9.1
Q ss_pred eeCCCCeeecccEEEEEe
Q 013218 81 LHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 81 ~v~~g~~v~~G~~l~~i~ 98 (447)
.+++|+.+..|++|+.++
T Consensus 76 ~~~dG~~v~~g~~l~~v~ 93 (299)
T 2jbm_A 76 FLPEGSKLVPVARVAEVR 93 (299)
T ss_dssp SSCTTCEECSSEEEEEEE
T ss_pred EcCCCCCCCCCCEEEEEE
Confidence 344555555555555554
No 148
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=37.89 E-value=15 Score=37.25 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 34 GIAECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 34 ~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
-++.+.=+.++++.||.|++||+|++|=.++
T Consensus 374 ~id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~ 404 (436)
T 3h5q_A 374 DIDLAVGIVLNKKIGDKVEEGESLLTIHSNR 404 (436)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEESS
T ss_pred CCCCCCceEEecCCcCEeCCCCeEEEEeCCh
Confidence 3455666889999999999999999986333
No 149
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=36.36 E-value=22 Score=30.03 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=27.7
Q ss_pred EEeCCCCeEEEEEee-CCCCeeecccEEEEEecCC
Q 013218 68 EITSRYKGKVAQLLH-APGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 68 ~i~ap~~G~i~~~~v-~~g~~v~~G~~l~~i~~~~ 101 (447)
++.+|.-|.|..+.+ +.|+.|..|++|+.|+...
T Consensus 38 ~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K 72 (136)
T 1zko_A 38 NHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVK 72 (136)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESS
T ss_pred hhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 345677787877777 9999999999999998654
No 150
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=34.92 E-value=18 Score=33.77 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=9.4
Q ss_pred eeCCCCeeecccEEEEEe
Q 013218 81 LHAPGNIVKVGETLLKLV 98 (447)
Q Consensus 81 ~v~~g~~v~~G~~l~~i~ 98 (447)
.|+.|+.|..|++|+.+.
T Consensus 136 ~Vk~Gd~V~~Gq~IG~vG 153 (245)
T 3tuf_B 136 SVEQGDKVKQNQVIGKSG 153 (245)
T ss_dssp SCCTTCEECTTCEEEECB
T ss_pred ccCCCCEECCCCEEEEeC
Confidence 355555555555555554
No 151
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=34.72 E-value=18 Score=34.38 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=14.0
Q ss_pred EeeCCCCeeecccEEEEEecC
Q 013218 80 LLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 80 ~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+.|++||.|..||+|+.+...
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~t 252 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGAT 252 (282)
T ss_dssp ECSCTTCEECTTCEEEECCCT
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 456777777777777766543
No 152
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=34.16 E-value=19 Score=34.42 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=15.6
Q ss_pred EeeCCCCeeecccEEEEEecC
Q 013218 80 LLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 80 ~~v~~g~~v~~G~~l~~i~~~ 100 (447)
+.|++||.|..||+|+.+...
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~T 259 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGST 259 (291)
T ss_dssp ECCCTTCEECTTCEEEECCCC
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 467888888888888877643
No 153
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=33.55 E-value=4.6e+02 Score=29.89 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=76.0
Q ss_pred ccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcC-----C-----CeE---eee-eeccCCCCHHH
Q 013218 269 KHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQ-----H-----GLA---VPN-IKNVQSLSILE 334 (447)
Q Consensus 269 ~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~-----~-----Gl~---~pv-I~~a~~~sl~~ 334 (447)
++|++.+++-|.+..|.++ .+. +++-+|+.++.- + |.+ +|+ +.-....++.+
T Consensus 251 ~~T~~~vllaa~a~~L~r~-------tg~-------~dvv~G~pvsgR~~~~~~~~~~vG~fvntlplr~~~~~~~s~~~ 316 (1304)
T 2vsq_A 251 HTTLSTALQAVWSVLISRY-------QQS-------GDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNG 316 (1304)
T ss_dssp TCCHHHHHHHHHHHHHHHH-------HTC-------SEEEEEEEECCCCTTSTTGGGCCSSCCEEEEEEEECCTTCBHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-------cCC-------CCEEEEEEeCCCCccchhhhcccccceeEEEEEecCCCCCcHHH
Confidence 7899999999999999865 332 234567666531 1 322 233 33345689999
Q ss_pred HHHHHHHHHHHhhcCC----------CCCCCCCCCeEEEEecCCCCCcccccccCCC-ceeEEEecceE---EeeEEcCC
Q 013218 335 ITKELSRLQQLAKDNE----------LNPADNSGGTITLSNIGAIGGKFGAPLLNLP-EVAIIAMGRIE---KVPRLSDD 400 (447)
Q Consensus 335 i~~~~~~l~~~ar~g~----------l~~~~~~~gtftISnlg~~G~~~~~pii~~p-q~ail~vG~i~---~~p~~~~d 400 (447)
+.+++++....+.... +....+-...|.+.|+...+....... ..+ ....+.+.... -...+.++
T Consensus 317 ll~~v~~~~~~a~~hq~~p~~~i~~~l~~~~lf~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~dL~l~~~~~ 395 (1304)
T 2vsq_A 317 LLKRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESS-ENGFDMVDVHVFEKSNYDLNLMASPG 395 (1304)
T ss_dssp HHHHHHHHHHHHGGGTTSCHHHHHHSSSCSSSCCCEEEECSSCHHHHSCCCHH-HHSEEEEEEEECCCCCSSEEEEEECS
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHHhCCCcccceeEEEeecccccccccccc-cCCceeEeeecccccccCeEEEEecC
Confidence 9999887665554322 111222223344444321100000000 000 00001110000 00011112
Q ss_pred CceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhh
Q 013218 401 GNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 401 G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
+ .+.+.+.||..+.|-..+.++++.|..+|+
T Consensus 396 ~------~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~ 426 (1304)
T 2vsq_A 396 D------EMLIKLAYNENVFDEAFILRLKSQLLTAIQ 426 (1304)
T ss_dssp S------SCEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred C------cEEEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 2 266889999999999998888877776664
No 154
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=33.18 E-value=25 Score=35.64 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=25.0
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
++.+.=+.++++.||.|++||+|++|=+++
T Consensus 372 ~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 372 IDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 444555889999999999999999998764
No 155
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=32.90 E-value=24 Score=35.52 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=24.8
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
++.+.=+.++++.||.|++||+|+.|=+++
T Consensus 364 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 364 IDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 444455789999999999999999997664
No 156
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=32.72 E-value=41 Score=31.88 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=12.1
Q ss_pred eeEEeCCCCeEEEEE
Q 013218 66 TIEITSRYKGKVAQL 80 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~ 80 (447)
-..|.|+.+|+|...
T Consensus 190 GtpV~A~~~G~V~~~ 204 (282)
T 2hsi_A 190 GTPIKAPAAGKVILI 204 (282)
T ss_dssp TCEEECSSCEEEEEE
T ss_pred CCeEEeccCeEEEEE
Confidence 346899999999776
No 157
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=31.62 E-value=27 Score=35.81 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
+.=+.++++.||.|++||+|++|=+++
T Consensus 410 ~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 410 GVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp SCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CCceEEEccCCCEECCCCeEEEEEcCC
Confidence 444789999999999999999997664
No 158
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=31.51 E-value=32 Score=30.03 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHH
Q 013218 137 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173 (447)
Q Consensus 137 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 173 (447)
.+.|.+++.++++|||++.-.. -.|+.+|++.|
T Consensus 67 ~~d~~a~~~l~~~Gid~s~h~a----r~l~~~d~~~~ 99 (173)
T 4etm_A 67 PPHEGTQEILRREGISFDGMLA----RQVSEQDLDDF 99 (173)
T ss_dssp CCCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHC
T ss_pred CCCHHHHHHHHHCCccccCCcc----ccCCHhhcCCC
Confidence 4679999999999999985432 25888888765
No 159
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=29.40 E-value=60 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=27.5
Q ss_pred EeCCCCeEEEEEee-CCCCeeecccEEEEEecCC
Q 013218 69 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 69 i~ap~~G~i~~~~v-~~g~~v~~G~~l~~i~~~~ 101 (447)
+..+.-|.|..+.+ +.|+.|..|++|+.|+...
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K 63 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVK 63 (131)
T ss_dssp HHHHHHCSEEEEECCCTTCEECBTSEEEEEEESS
T ss_pred hhcccCCCceEEEecCCCCEEeCCCEEEEEEecc
Confidence 44577787888877 9999999999999998654
No 160
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=28.84 E-value=25 Score=32.77 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=15.1
Q ss_pred eeCCCCeeecccEEEEEecC
Q 013218 81 LHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 81 ~v~~g~~v~~G~~l~~i~~~ 100 (447)
.|++||.|..||+|+.+...
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~t 202 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGDS 202 (252)
T ss_dssp SCCTTCEECTTCEEEECBCC
T ss_pred cCCCCCEECCCCEEEEECCC
Confidence 57788888888888877653
No 161
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=27.74 E-value=53 Score=32.14 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEeeCCCCeeecccEEEEEecC
Q 013218 79 QLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 79 ~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
++.|+.||.|..||+|+.+...
T Consensus 283 ~~~v~~G~~V~~G~~Ig~~G~t 304 (361)
T 2gu1_A 283 KILVKKGQLVKRGQKIALAGAT 304 (361)
T ss_dssp EECCCTTCEECTTCEEEECCCC
T ss_pred ccccCCcCEECCCCEEEEECCC
Confidence 4679999999999999998654
No 162
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=26.50 E-value=1.3e+02 Score=20.67 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=30.5
Q ss_pred CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccc
Q 013218 237 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMN 291 (447)
Q Consensus 237 ~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln 291 (447)
...+|++-.+-++-.-++...+. .+.|++.++.+++.+++...-.++
T Consensus 6 ~~~~~~lRlp~eL~~~l~~~A~~--------~grS~N~~i~~~L~~~l~~~~r~~ 52 (53)
T 1baz_A 6 KMPQVNLRWPREVLDLVRKVAEE--------NGRSVNSEIYQRVMESFKKEGRIG 52 (53)
T ss_dssp CSCEEEEECCHHHHHHHHHHHHH--------TTCCHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCeeEEECCHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhhccccC
Confidence 34566665444444433333332 378999999999999998765554
No 163
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=26.44 E-value=49 Score=32.01 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=25.5
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhh
Q 013218 410 TVNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 410 ~lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
-+.+++||-++||.-...|+++|.++..
T Consensus 117 ~l~l~~hH~i~Dg~S~~~l~~~l~~~Y~ 144 (422)
T 1q9j_A 117 ELTLYLHHCMADGHHGAVLVDELFSRYT 144 (422)
T ss_dssp EEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeceEEEchhhHHHHHHHHHHHHH
Confidence 4789999999999999999999998775
No 164
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=25.96 E-value=95 Score=28.71 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=19.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe
Q 013218 38 CELLKWFVKEGDEIEEFQPLCAVQS 62 (447)
Q Consensus 38 g~i~~w~v~~Gd~V~~g~~l~~iet 62 (447)
+-+.++.|++||.|++||+|+.+..
T Consensus 130 ~HL~~i~Vk~Gd~V~~Gq~IG~vG~ 154 (245)
T 3tuf_B 130 QSLSEVSVEQGDKVKQNQVIGKSGK 154 (245)
T ss_dssp EEESEESCCTTCEECTTCEEEECBC
T ss_pred ecCCccccCCCCEECCCCEEEEeCC
Confidence 4455777888888888888888764
No 165
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=25.74 E-value=28 Score=33.19 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=10.6
Q ss_pred eeCCCCeeecc------cEEEEEec
Q 013218 81 LHAPGNIVKVG------ETLLKLVV 99 (447)
Q Consensus 81 ~v~~g~~v~~G------~~l~~i~~ 99 (447)
.+++|+.|..| ++|+.++-
T Consensus 72 ~~~eG~~v~~g~~~~~~~~l~~v~G 96 (294)
T 3c2e_A 72 LFKEGSFLEPSKNDSGKIVVAKITG 96 (294)
T ss_dssp SSCTTCEECGGGSSSSCEEEEEEEE
T ss_pred EeCCCCEeCCCCCCCCCcEEEEEEE
Confidence 45555555555 55555553
No 166
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=25.55 E-value=60 Score=31.21 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=29.1
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218 66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100 (447)
Q Consensus 66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~ 100 (447)
..-++|+..|.+. ..++.|+.|+.|++|+.+.+.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp 290 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPM 290 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTCEECTTCEEEEEECT
T ss_pred ceEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECC
Confidence 3457899999886 678899999999999999764
No 167
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=25.33 E-value=7.9e+02 Score=27.89 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=25.0
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhh
Q 013218 410 TVNIGADHRVLDGATVAKFCNEWKQLIE 437 (447)
Q Consensus 410 ~lslt~DHRvvDG~~aa~Fl~~l~~~Le 437 (447)
-+-+++||-++||.-...|+++|.++..
T Consensus 140 ~l~~~~HHii~DG~S~~~l~~el~~~Y~ 167 (1304)
T 2vsq_A 140 EWVWSYHHIILDGWCFGIVVQDLFKVYN 167 (1304)
T ss_dssp EEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCceeechhhHHHHHHHHHHHHH
Confidence 4678999999999999999999988764
No 168
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=25.23 E-value=5e+02 Score=25.59 Aligned_cols=34 Identities=18% Similarity=0.446 Sum_probs=26.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHh----hCHHHh
Q 013218 409 MTVNIGADHRVLDGATVAKFCNEWKQLI----ENPELL 442 (447)
Q Consensus 409 m~lslt~DHRvvDG~~aa~Fl~~l~~~L----e~P~~l 442 (447)
+.+.+.||-.+.+...+.+|++.|..+| ++|+.-
T Consensus 476 l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~~~p~~~ 513 (520)
T 2jgp_A 476 MTIGVEYSTSLFTRETMERFSRHFLTIAASIVQNPHIR 513 (520)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCB
T ss_pred EEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCccCc
Confidence 7789999999999988888877776655 556543
No 169
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=25.10 E-value=8.8 Score=29.71 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=12.4
Q ss_pred EEcCCCCeecCCCeEE
Q 013218 43 WFVKEGDEIEEFQPLC 58 (447)
Q Consensus 43 w~v~~Gd~V~~g~~l~ 58 (447)
++|++||.|++||.|.
T Consensus 67 l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 67 LNVFEGERVERGDVIS 82 (84)
T ss_dssp CSSCTTEEECBSCSSB
T ss_pred eEeCCCCEECCCCCcc
Confidence 3588888888888764
No 170
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=24.77 E-value=25 Score=35.62 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=25.2
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218 35 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 64 (447)
Q Consensus 35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K 64 (447)
++.+.=+.++++.||.|++||+|++|=+++
T Consensus 377 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 377 IDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 444555889999999999999999998765
No 171
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=24.46 E-value=34 Score=33.52 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEeC
Q 013218 39 ELLKWFVKEGDEIEEFQPLCAVQSD 63 (447)
Q Consensus 39 ~i~~w~v~~Gd~V~~g~~l~~iet~ 63 (447)
-+.++.|++||.|++||+|+.+.+.
T Consensus 280 hl~~~~v~~G~~V~~G~~Ig~~G~t 304 (361)
T 2gu1_A 280 HLDKILVKKGQLVKRGQKIALAGAT 304 (361)
T ss_dssp EESEECCCTTCEECTTCEEEECCCC
T ss_pred CcCccccCCcCEECCCCEEEEECCC
Confidence 3445779999999999999998643
No 172
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=24.35 E-value=1.1e+02 Score=28.47 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=7.2
Q ss_pred EcCCCCeecCCCeEEEE
Q 013218 44 FVKEGDEIEEFQPLCAV 60 (447)
Q Consensus 44 ~v~~Gd~V~~g~~l~~i 60 (447)
.|++||.|++||+|+.+
T Consensus 183 ~V~~G~~V~~Gq~IG~v 199 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYM 199 (252)
T ss_dssp SCCTTCEECTTCEEEEC
T ss_pred cCCCCCEECCCCEEEEE
Confidence 34444444444444443
No 173
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=24.06 E-value=51 Score=27.15 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHH
Q 013218 137 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173 (447)
Q Consensus 137 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 173 (447)
.+.|.+.+.++++|||++.-. --.|+.+|+..|
T Consensus 43 ~~~p~a~~~l~~~Gid~s~~~----ar~l~~~~~~~~ 75 (131)
T 1jf8_A 43 GVNPKAIEAMKEVDIDISNHT----SDLIDNDILKQS 75 (131)
T ss_dssp CCCHHHHHHHHHTTCCCTTCC----CCBCCHHHHHHC
T ss_pred CCCHHHHHHHHHcCCCcccCc----cccCChHHhccC
Confidence 478999999999999987532 234777777653
No 174
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=24.04 E-value=18 Score=35.30 Aligned_cols=40 Identities=10% Similarity=-0.150 Sum_probs=27.0
Q ss_pred EEEEcCCCCeecCCCeEEEEEeC-----ceeeEEeCCCCeEEEEE
Q 013218 41 LKWFVKEGDEIEEFQPLCAVQSD-----KATIEITSRYKGKVAQL 80 (447)
Q Consensus 41 ~~w~v~~Gd~V~~g~~l~~iet~-----K~~~~i~ap~~G~i~~~ 80 (447)
+.-.++.|+.|++||+|+++-.. ....+|.+|.+|++.-.
T Consensus 275 ~~~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~g~ 319 (341)
T 1yw4_A 275 LADSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKPGL 319 (341)
T ss_dssp SCTTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCSSS
T ss_pred EeecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCceeee
Confidence 33346899999999999988543 23456999999988543
No 175
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=23.33 E-value=22 Score=34.50 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=14.8
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 013218 42 KWFVKEGDEIEEFQPLCAVQ 61 (447)
Q Consensus 42 ~w~v~~Gd~V~~g~~l~~ie 61 (447)
++.|++||.|++||+|+.+.
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G 269 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTG 269 (334)
T ss_dssp SCCCCTTCEECTTSEEEECB
T ss_pred cccCCCcCEECCCCEEEeec
Confidence 44677888888888887765
No 176
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=22.48 E-value=20 Score=41.16 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=18.4
Q ss_pred EEcCCCCeecCCCeEEEEE--eCce
Q 013218 43 WFVKEGDEIEEFQPLCAVQ--SDKA 65 (447)
Q Consensus 43 w~v~~Gd~V~~g~~l~~ie--t~K~ 65 (447)
+.|++|+.|+.||+|+.|= +.|.
T Consensus 1107 ~~v~~g~~v~~g~vlakip~~~~k~ 1131 (1407)
T 3lu0_D 1107 VQLEDGVQISSGDTLARIPQESGGT 1131 (1407)
T ss_dssp CCCCSSCEECTTCEEECCCCCCCCS
T ss_pred EEecCCCEeccCceEEecchhhccc
Confidence 4689999999999999763 4443
No 177
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=21.66 E-value=62 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=26.1
Q ss_pred EeCCCCeEEEEEee-CCCCeeecccEEEEEecCC
Q 013218 69 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 69 i~ap~~G~i~~~~v-~~g~~v~~G~~l~~i~~~~ 101 (447)
+..+.-|.|..+.+ +.|+.|..|++|+.|+...
T Consensus 30 ~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K 63 (128)
T 1onl_A 30 YAQDALGDVVYVELPEVGRVVEKGEAVAVVESVK 63 (128)
T ss_dssp HHHHHHCSEEEEECBCTTCEECTTCEEEEEEESS
T ss_pred HHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcc
Confidence 34456677777766 9999999999999998654
No 178
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=21.21 E-value=64 Score=26.69 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=26.3
Q ss_pred EeCCCCeEEEEEee-CCCCeeecccEEEEEecCC
Q 013218 69 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVGD 101 (447)
Q Consensus 69 i~ap~~G~i~~~~v-~~g~~v~~G~~l~~i~~~~ 101 (447)
+..+.-|.|..+.+ +.|+.|..|++|+.|+...
T Consensus 31 ~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K 64 (128)
T 3a7l_A 31 HAQELLGDMVFVDLPEVGATVSAGDDCAVAESVK 64 (128)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESS
T ss_pred HHhccCCceEEEEecCCCCEEeCCCEEEEEEecc
Confidence 34566677777766 8999999999999998654
No 179
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=21.18 E-value=58 Score=27.83 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=25.1
Q ss_pred ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHH
Q 013218 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173 (447)
Q Consensus 136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 173 (447)
-.+.|.+.+.++++|||++ ... -.|+.+|+..|
T Consensus 52 ~~~~p~a~~~l~e~Gid~s-~~a----r~l~~~~~~~~ 84 (161)
T 2cwd_A 52 EPMDPRARRVLEEEGAYFP-HVA----RRLTREDVLAY 84 (161)
T ss_dssp CCCCHHHHHHHHHHTCCCC-CCC----CBCCHHHHHHC
T ss_pred CCCCHHHHHHHHHcCcCcc-ccc----cCCCHhHhccC
Confidence 3578999999999999997 432 25777777653
No 180
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=20.22 E-value=72 Score=27.01 Aligned_cols=34 Identities=6% Similarity=-0.187 Sum_probs=26.0
Q ss_pred ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHH
Q 013218 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173 (447)
Q Consensus 136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 173 (447)
-.+.|.+.+.++++|||++.-.. -.++.+|+..|
T Consensus 60 ~~~dp~a~~vl~e~Gidis~h~a----r~l~~~~~~~~ 93 (148)
T 3rh0_A 60 QGLNQLSVESIAEVGADMSQGIP----KAIDPELLRTV 93 (148)
T ss_dssp SSCCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHC
T ss_pred CCCCHHHHHHHHHcCCCcCCCee----eECCHHHhcCC
Confidence 35789999999999999875322 35788888754
No 181
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=20.09 E-value=49 Score=28.20 Aligned_cols=33 Identities=6% Similarity=-0.074 Sum_probs=24.7
Q ss_pred ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHH
Q 013218 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 172 (447)
Q Consensus 136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~ 172 (447)
-.+.|.+++.++++|||++.... -.|+.+|+..
T Consensus 49 ~~~~~~a~~~l~~~Gid~s~~~a----r~l~~~d~~~ 81 (156)
T 2gi4_A 49 EGMHYGTKNKLAQLNIEHKNFTS----KKLTQKLCDE 81 (156)
T ss_dssp CCCCHHHHHHHHHTSCSCCCCCC----CBCCHHHHTT
T ss_pred CCCCHHHHHHHHHcCCCccCCcc----ccCCHHHhcc
Confidence 35789999999999999876432 2467777654
No 182
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=20.08 E-value=67 Score=27.75 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=25.4
Q ss_pred ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHH
Q 013218 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173 (447)
Q Consensus 136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 173 (447)
-.+.|.+.+.++++|||++.... -.|+.+|+..|
T Consensus 63 ~~~~p~a~~vl~e~Gid~s~~~s----r~l~~~~~~~~ 96 (167)
T 2fek_A 63 KGADPTAISVAAEHQLSLEGHCA----RQISRRLCRNY 96 (167)
T ss_dssp CCCCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHS
T ss_pred CCCCHHHHHHHHHcCCCccCCcC----ccCCHHHhccC
Confidence 34789999999999999975322 34777777653
Done!