Query 013219
Match_columns 447
No_of_seqs 148 out of 1608
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 06:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.4E-46 4.8E-51 381.5 27.0 388 20-446 7-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5.1E-27 1.7E-31 234.7 30.0 361 19-430 22-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 2.1E-25 7.3E-30 222.1 33.9 332 20-422 21-425 (438)
4 2cfq_A Lactose permease; trans 99.9 8.1E-23 2.8E-27 202.8 22.9 332 46-438 29-408 (417)
5 4aps_A DI-OR tripeptide H+ sym 99.9 1E-22 3.5E-27 206.1 19.5 352 54-438 48-480 (491)
6 2gfp_A EMRD, multidrug resista 99.9 1E-22 3.5E-27 198.7 13.0 137 28-164 3-180 (375)
7 2xut_A Proton/peptide symporte 99.8 2E-18 7E-23 175.9 14.0 112 46-157 34-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 9E-11 3.1E-15 116.5 20.6 140 296-435 68-212 (451)
9 3o7q_A L-fucose-proton symport 99.2 1.4E-09 4.9E-14 107.4 22.5 110 294-403 65-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.2 2.4E-09 8.2E-14 107.6 21.2 138 295-432 59-199 (491)
11 2gfp_A EMRD, multidrug resista 99.1 1.3E-09 4.5E-14 105.5 14.5 143 295-437 40-182 (375)
12 2xut_A Proton/peptide symporte 99.0 1.2E-08 4.3E-13 103.3 18.5 136 296-431 60-200 (524)
13 4gc0_A D-xylose-proton symport 98.6 1.1E-06 3.9E-11 87.9 17.2 102 299-400 64-183 (491)
14 2cfq_A Lactose permease; trans 98.3 4.9E-07 1.7E-11 88.9 6.4 106 59-164 258-405 (417)
15 2g9p_A Antimicrobial peptide l 42.9 8.7 0.0003 19.7 0.9 15 79-93 2-16 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.4e-46 Score=381.54 Aligned_cols=388 Identities=19% Similarity=0.226 Sum_probs=275.9
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccC--------CCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc
Q 013219 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNL--------SSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG 91 (447)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~ 91 (447)
++|.+.+.+.+++|.+.++||...++.+.|.++++++. ++.+.|++.|++++|.++|++++|+++||+|||.
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 57889999999999999999999999999988877632 3345789999999999999999999999999991
Q ss_pred ----------------------------------------------------------hhhhhhhhcccCCCCchhHHHH
Q 013219 92 ----------------------------------------------------------HVFLSWFLEFVPPSNRGMWMVI 113 (447)
Q Consensus 92 ----------------------------------------------------------~~~~~~~~E~~p~~~Rg~~~~~ 113 (447)
+..++|++|++|+++||+..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 1223577899999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHcC--------CCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHH
Q 013219 114 FSSFWTIGSVSEAIGAWIIMP--------RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQV 185 (447)
Q Consensus 114 ~~~~~~iG~l~~~~~~~~~~~--------~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~ 185 (447)
.+.++.+|.+.++.+++.... ...||+++.++.+|+++..+.++++|||||||..|+|.||+++.++|.++.
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 999999999998888776432 346999999999999999999999999999999999999999999988754
Q ss_pred cCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013219 186 NKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL 265 (447)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 265 (447)
+... ++ .. + .++.. .++++ ......+++ .++..+..+...+.+...++.+..
T Consensus 247 ~~~~-------~~-~~---~------~~~~~--------~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4gc0_A 247 TLAT-------QA-VQ---E------IKHSL--------DHGRK-TGGRLLMFG--VGVIVIGVMLSIFQQFVGINVVLY 298 (491)
T ss_dssp HHHH-------HH-HH---H------HHHHH--------HHHHH-HTTHHHHSC--CTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred chhH-------HH-HH---H------HHHHH--------Hhhhh-hhhHHHHhc--ccHHHHHHHHHHHHHHhhhhHHHh
Confidence 3210 00 00 0 00000 00000 001111111 112222223333333333333333
Q ss_pred HHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh--h--
Q 013219 266 LISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--Q-- 341 (447)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~--~-- 341 (447)
+.+.+... .+..........++.++..+++.+++++++||+|||+.++.+..++.+.++.+... .
T Consensus 299 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (491)
T 4gc0_A 299 YAPEVFKT-----------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 367 (491)
T ss_dssp HHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHh-----------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc
Confidence 33332211 11122233444566778889999999999999999999988777766665544321 1
Q ss_pred hhhHHHHHHH-HHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc------hhhHHHHH
Q 013219 342 SNILTTGLLF-GARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC------HQMTAVVL 414 (447)
Q Consensus 342 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~------~~~~~~~~ 414 (447)
........++ ....+..+..++.|.+++|+||+++|+++.|++++++++++++++.++|.+.+.. +...++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i 447 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWI 447 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 1122222222 2222334445678999999999999999999999999999999999988765432 22346788
Q ss_pred HHHHHHHHHHHHHhccccccCCCccccccccC
Q 013219 415 LVVVIVTSILSVMLIPFETKGQELSDTVDFTS 446 (447)
Q Consensus 415 ~~~~~~i~~i~~~~~~pEtkg~~l~e~~~~~~ 446 (447)
++++++++.+++++++||||||++||+++.++
T Consensus 448 ~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 448 YGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 99999999999999999999999999887765
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=5.1e-27 Score=234.68 Aligned_cols=361 Identities=12% Similarity=0.129 Sum_probs=238.4
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------- 90 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------- 90 (447)
..+.+++.+..+.++.+..+++...++...|.+.+++ +++.+.+++.+++.++..++++++|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 3566788888888999999999988999999999999 9999999999999999999999999999999999
Q ss_pred --------c----------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcC
Q 013219 91 --------G----------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 134 (447)
Q Consensus 91 --------~----------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~ 134 (447)
. +...+++.|++|+++|++..++.+.+..+|.++++.++..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1112345699999999999999999999999998888766555
Q ss_pred CCC-chHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcc
Q 013219 135 RLD-WRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 212 (447)
Q Consensus 135 ~~~-WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (447)
..+ ||+++++.+++.++. ++..+++||+|++...+.+ ++ .. .+ + +.+.
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------~~----~~--~---~~~~ 230 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE--------------------YK----ND--Y---PDDY 230 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT--------------------TC----CC----------
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh--------------------hc----cc--c---cccc
Confidence 577 999999988877665 4556788999974211100 00 00 00 0 0000
Q ss_pred cccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhh
Q 013219 213 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL 292 (447)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 292 (447)
+. ++ .++...+....+++++++. ........+...+.+++...+.+..... ..+.+....
T Consensus 231 ~~------~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~ 290 (451)
T 1pw4_A 231 NE------KA-EQELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKE----------VKHFALDKS 290 (451)
T ss_dssp ---------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHBTT----------BSCCCHHHH
T ss_pred hh------hh-hcccccccchHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCHHHH
Confidence 00 00 0000000011334444332 2222333333444455554455533211 011222222
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHHHHHHHH-HHHHHHHHhh--hhhHHHHHHHHHHHHHhhhhhhhHhh
Q 013219 293 YIDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIY 367 (447)
Q Consensus 293 ~~~~~i~~~~~i~g~~~~~~l~dr~--GRr~~l~~~~~~~~-~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (447)
.....+..++.+++.++.+++.||+ |||+.+..+..+.. +.++.+.... +........+...++..+..+..+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 370 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 370 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 2334455678889999999999999 99988876665544 3333332221 22222222333333344445566789
Q ss_pred ccccCCcchhhhHhhHHHHHHhH-hHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 013219 368 AAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 430 (447)
Q Consensus 368 ~~ElfP~~~R~~~~g~~~~~~~i-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 430 (447)
..|.+|++.|+++.|+.+.+.++ ++.++|.+.+++.+..+....+++.+++.+++.++..+..
T Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999888776655667777777777666655543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=2.1e-25 Score=222.13 Aligned_cols=332 Identities=10% Similarity=-0.000 Sum_probs=219.4
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------
Q 013219 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------- 90 (447)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------- 90 (447)
.+.+++.++.+.+.++..+++....+...|.+.+++++++.+.+++.+++.++..+++++.|+++||+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34455566666778888999988999999999999999999999999999999999999999999999999
Q ss_pred ----------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc-CC
Q 013219 91 ----------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-PR 135 (447)
Q Consensus 91 ----------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~-~~ 135 (447)
.+...+++.|+.|+++|++..++.+.+..+|.++++.++..+. ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223346779999999999999999999999999988876654 43
Q ss_pred CC-------------------------chHHHHhhhHHHHHHHHH--hhcccCChHHHHhcCChHHHHHHHHHHHHHcCC
Q 013219 136 LD-------------------------WRWLLGLSSIPSFILLAF--LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKT 188 (447)
Q Consensus 136 ~~-------------------------WR~~~~~~~i~~~i~~~~--~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~ 188 (447)
.+ ||+++++.+++.++..+. +...||+++. + +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~------------------~ 239 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N------------------H 239 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---C------------------C
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---c------------------c
Confidence 33 999998776665554333 2335665430 0 0
Q ss_pred CCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013219 189 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 268 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 268 (447)
+ ++ ++++....++++++++..+...+... .....++....+.+
T Consensus 240 ~--------------~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 282 (438)
T 3o7q_A 240 S--------------DA--------------------KQGSFSASLSRLARIRHWRWAVLAQF---CYVGAQTACWSYLI 282 (438)
T ss_dssp C--------------CS--------------------STTSHHHHHHHHTTCSHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred c--------------cc--------------------cccchhhhHHHHHhChHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 0 00 00011234556666544333333222 22222233322333
Q ss_pred Hh-hcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 013219 269 EL-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTT 347 (447)
Q Consensus 269 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~ 347 (447)
.. ... ..+.+.........+..++.+++.++.+++.||+|||+.+..+..++.+.++.+....+... .
T Consensus 283 ~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 351 (438)
T 3o7q_A 283 RYAVEE----------IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-L 351 (438)
T ss_dssp HHHHHH----------STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-H
T ss_pred HHhhhc----------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-H
Confidence 22 110 00111122223334456778889999999999999999988877766665554444333222 2
Q ss_pred HHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-hhHHHHHHHHHHHHH
Q 013219 348 GLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTS 422 (447)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~ 422 (447)
...+...++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+++.+..+ ....+.+.+.+.++.
T Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 352 IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 2222333344445667888989999988 999999877 778999999999998887765 444455444443333
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=8.1e-23 Score=202.83 Aligned_cols=332 Identities=14% Similarity=0.086 Sum_probs=190.9
Q ss_pred hhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcchhh------------h------------------
Q 013219 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGHVF------------L------------------ 95 (447)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~~~------------~------------------ 95 (447)
+..+.+++++|+++.+.|++.++..++..++++++|+++||+|||..+. .
T Consensus 29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T 2cfq_A 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI 108 (417)
T ss_dssp THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456779999999999999999999999999999999999991000 0
Q ss_pred --------------hhhhcccCC--CCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcc
Q 013219 96 --------------SWFLEFVPP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ 159 (447)
Q Consensus 96 --------------~~~~E~~p~--~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~l 159 (447)
....++.++ +.||...+..+.+..+|..+++.++..+.. .+||.++++.+++.++..+..++.
T Consensus 109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~ 187 (417)
T 2cfq_A 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp GGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHc
Confidence 001133332 345655666666677777777766555433 579999999888776665555555
Q ss_pred c-CChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhc
Q 013219 160 P-ESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLF 238 (447)
Q Consensus 160 p-ESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (447)
| |+|+ +.+.+ +.++. + . ++....++++++
T Consensus 188 ~~~~~~----~~~~~----------------------------~~~~~--------------~--~--~~~~~~~~~~~~ 217 (417)
T 2cfq_A 188 KTDAPS----SATVA----------------------------NAVGA--------------N--H--SAFSLKLALELF 217 (417)
T ss_dssp CCCCSC----SSCSS----------------------------SSSSS--------------C--C--CCCCHHHHHHHT
T ss_pred Cccccc----ccccc----------------------------ccccc--------------c--c--ccccHHHHHHHh
Confidence 4 4432 00000 00000 0 0 000112344555
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhC
Q 013219 239 SSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 318 (447)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~G 318 (447)
+++......+. .+.....++....+.+...... ................+..+..+++.++.++++||+|
T Consensus 218 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 287 (417)
T 2cfq_A 218 RQPKLWFLSLY---VIGVSCTYDVFDQQFANFFTSF-------FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIG 287 (417)
T ss_dssp TCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHT-------SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCchhhHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54332222221 1111122222111122111000 0000000111111223345567788999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHH-HHHHhHhHhHHHH
Q 013219 319 RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA-NAMGRIGGMVCPL 397 (447)
Q Consensus 319 Rr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~-~~~~~i~~~~~~~ 397 (447)
||+.+..+..+..+..+.+....+.....+..+...++.....+..+.+.+|.+|++.|+++.++. +..++++++++|.
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~ 367 (417)
T 2cfq_A 288 GKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 999887766665554433333222221111111111122222234578999999999999999996 7788899999999
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCc
Q 013219 398 VAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 438 (447)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l 438 (447)
+.+++.+..+....+.+.+++++++.+..+++.||+|..++
T Consensus 368 l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred hHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 99988776554455667777778887777777788776554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.90 E-value=1e-22 Score=206.06 Aligned_cols=352 Identities=12% Similarity=0.017 Sum_probs=183.5
Q ss_pred cccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh-hCCc----------------------------------------ch
Q 013219 54 EWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRS----------------------------------------GH 92 (447)
Q Consensus 54 ~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr-~GRr----------------------------------------~~ 92 (447)
++|++..+.+++.+++.++..+++++.|+++|| +||| .+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 399999999999999999999999999999999 8999 23
Q ss_pred hhhhhhhcccCCCC--chhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcc-cC----ChHH
Q 013219 93 VFLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ-PE----SPRY 165 (447)
Q Consensus 93 ~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~l-pE----SP~~ 165 (447)
...+++.|++|+++ |+...+..+...++|..+++.++..+..+.+||+.|++.++..++..+..++. |+ .++-
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 34456789999999 67778889999999999998888777666899999999877665544433222 21 1100
Q ss_pred HHhcCChHHHHHHHHH--------------HHHHcCCCCCCCccccccccCCCCCCCCCcc-cccccCCCCCCCcCCCch
Q 013219 166 LCLKGRTAEAHRALEK--------------IAQVNKTKLPNGKLVARRSTLPTGERAPPEL-VHLLSSNGGNKTTEGKSG 230 (447)
Q Consensus 166 L~~~g~~~~a~~~l~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (447)
-..+.+.++.++..++ +...+..+ .++.... ............ ....++ . .
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~---~-~------ 273 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS--LPAYINL--LTIVAIAIPVFYFAWMISS---V-K------ 273 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC--TTHHHHH--HHHHHHHHHHHHHHHHC--------------
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhh--hhHHHHHHHHHHHHHHhhc---c-c------
Confidence 0011233344443332 11111100 0000000 000000000000 000000 0 0
Q ss_pred hHHHHhhcchhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhH
Q 013219 231 LSLFLMLFSSKLARTTILLWLL----LFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 306 (447)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g 306 (447)
.....+++. ......+.. +............+.....+ .+...... ...+..+..+++
T Consensus 274 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~--~~~~~~~~~~~~ 335 (491)
T 4aps_A 274 ---VTSTEHLRV-VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVD------------SSWFPVSW--FQSLNPLFIMLY 335 (491)
T ss_dssp -----------C-TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCC------------CSSSCSGG--GTTHHHHHHHHH
T ss_pred ---ccHHHHHHH-HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc------------cCccCHHH--HhccchHHHHHH
Confidence 000000111 111111111 11111111111111111110 00011111 112334555667
Q ss_pred HHHHHHHHhhhChhHHHH-----HHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 307 LLLAAILVDTAGRKLSIT-----IMFTLSCLFLLPLVTYQ---------SNILTTGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 307 ~~~~~~l~dr~GRr~~l~-----~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
..+.+++.||+|||+... .+...+.+.++.+.... +........+...+......+..+.+..|.+
T Consensus 336 ~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 415 (491)
T 4aps_A 336 TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415 (491)
T ss_dssp HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 788899999999986543 33333333332222211 1111122222222222223456788999999
Q ss_pred CcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCc
Q 013219 373 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 438 (447)
Q Consensus 373 P~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l 438 (447)
|++.|+++.|+.+....+++.++|.+.+.+.+. +....+..++.+++++.++.+++.++++++..
T Consensus 416 p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (491)
T 4aps_A 416 PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ 480 (491)
T ss_dssp TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988765443 44456777777888887787887778776543
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=1e-22 Score=198.75 Aligned_cols=137 Identities=10% Similarity=0.041 Sum_probs=117.0
Q ss_pred HHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-----------------
Q 013219 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS----------------- 90 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr----------------- 90 (447)
+++.++.+...++....+...|.+.+++++++.+.+++.++..++..+++++.|+++||+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 344566677888888888888999999999999999999999999999999999999999999
Q ss_pred -----------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhH
Q 013219 91 -----------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 147 (447)
Q Consensus 91 -----------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i 147 (447)
.+....++.|+.|+++|++..+..+.+..+|..+++.++..+....+||..+.+.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 122344677999999999999999999999999999888877666789999999888
Q ss_pred HHHHHHH-HhhcccCChH
Q 013219 148 PSFILLA-FLGFQPESPR 164 (447)
Q Consensus 148 ~~~i~~~-~~~~lpESP~ 164 (447)
..++..+ ..+++||+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHCcccCC
Confidence 8777655 5667898875
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.77 E-value=2e-18 Score=175.91 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=90.3
Q ss_pred hhccccccccc------CCCcchhHHHHHHHHHHhHhhhHHHHhhhhh-CCc----------------------------
Q 013219 46 FVGPTVKSEWN------LSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRS---------------------------- 90 (447)
Q Consensus 46 ~~~~~~~~~~~------l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~-GRr---------------------------- 90 (447)
+..+.+.++++ ++..+.+++.+++.++..+++++.|+++||+ |||
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33444567788 9999999999999999999999999999999 999
Q ss_pred -------------chhhhhhhhcccCCCCchhHHHH---HHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHH
Q 013219 91 -------------GHVFLSWFLEFVPPSNRGMWMVI---FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 154 (447)
Q Consensus 91 -------------~~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~ 154 (447)
.+...+++.|++|+++||+..+. .+.+.++|..+++.++..+....+||.++++.++..++..+
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 12223456799999999877666 88899999998888776666668999999998877666554
Q ss_pred Hhh
Q 013219 155 FLG 157 (447)
Q Consensus 155 ~~~ 157 (447)
..+
T Consensus 194 ~~~ 196 (524)
T 2xut_A 194 FFW 196 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.32 E-value=9e-11 Score=116.49 Aligned_cols=140 Identities=14% Similarity=0.021 Sum_probs=102.1
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
..+..+...++.++.|+++||+|||+.+..+..+.++..+.... ..+.....+..+...++.....+....+.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34556777889999999999999999998888777666655554 33322222222233333333456678899999
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
+|.+.|+++.++.+....++..++|.+.+++.+..+ +...+++.++++++..++..+..||++.
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999887766655 5566777777777766666666777644
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.21 E-value=1.4e-09 Score=107.42 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=80.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccc
Q 013219 294 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 370 (447)
Q Consensus 294 ~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 370 (447)
....+..+...++.++.|+++||+|||+.+..+..+.++..+.. ....+.....+..+...++.....+....+.+|
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 144 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHH
Confidence 33445566778889999999999999999988887766665544 322232222222223333333444567889999
Q ss_pred cCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH
Q 013219 371 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 403 (447)
Q Consensus 371 lfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~ 403 (447)
.+|.+.|+++.++.+....++..++|.+.+.+.
T Consensus 145 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp SSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887766
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.16 E-value=2.4e-09 Score=107.63 Aligned_cols=138 Identities=12% Similarity=-0.017 Sum_probs=96.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCC
Q 013219 295 DEFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP 373 (447)
Q Consensus 295 ~~~i~~~~~i~g~~~~~~l~dr-~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 373 (447)
...+..+...++.++.|+++|| +|||+.+..+..+..+..+......+.....+..+...++.....+....+.+|.+|
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 138 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence 3445567778899999999999 899999988887766666555544333322222223333333345667889999999
Q ss_pred cch--hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 013219 374 TSV--RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 432 (447)
Q Consensus 374 ~~~--R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pE 432 (447)
.+. |+++.++.+....++..++|.+.+.+.+..++...+++.++..+++.+...+..|+
T Consensus 139 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 139 EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 988 77788888899999999999999887776666666666666666665555544333
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.08 E-value=1.3e-09 Score=105.54 Aligned_cols=143 Identities=15% Similarity=0.039 Sum_probs=101.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCc
Q 013219 295 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 295 ~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~ 374 (447)
...+..+...++.++.|+++||+|||+.+..+.....+..+......+.....+..+...++.....+....+.+|.+|.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 119 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER 119 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH
Confidence 34455677788899999999999999998887776666555444433322222222222233333445678899999999
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 437 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~ 437 (447)
+.|+++.++.+....++..++|.+.+++.+..++...+++.+...++..+...+..||++.++
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 120 TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 999999999999999999999998887766555555666667666666665666678876543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.00 E-value=1.2e-08 Score=103.32 Aligned_cols=136 Identities=15% Similarity=0.037 Sum_probs=91.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhHhhccccCC
Q 013219 296 EFITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYP 373 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~-GRr~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 373 (447)
..+..+...++.++.|+++||+ |||+.+..+.++..+..+...... +.....+..+...++.....+....+.+|.+|
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 3445667788899999999999 999998887776666555544443 33222222222223333344567889999999
Q ss_pred cchhhhHhhH---HHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccc
Q 013219 374 TSVRSTGAGA---ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 431 (447)
Q Consensus 374 ~~~R~~~~g~---~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~p 431 (447)
.+.|+++.+. .+....+++.++|.+.+.+.+..++...+++.+++.+++.+...+..|
T Consensus 140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999876665 888888999999988877766555555666666666665555444333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.59 E-value=1.1e-06 Score=87.88 Aligned_cols=102 Identities=18% Similarity=0.022 Sum_probs=69.8
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH------------------hhhhhHHHHHHHHHHHHHhhh
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT------------------YQSNILTTGLLFGARMCVMGA 360 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~ 360 (447)
..++.++|.++.|+++||+|||+.++++.++..+..+..++ ..+.....+.=+...++..+.
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~ 143 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999999998887766655444332 111111122222333333444
Q ss_pred hhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHH
Q 013219 361 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 400 (447)
Q Consensus 361 ~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~ 400 (447)
.+....+.+|..|.+.|++..++......++...++.+..
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~ 183 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY 183 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence 5677899999999999999999888877777666665543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.33 E-value=4.9e-07 Score=88.90 Aligned_cols=106 Identities=7% Similarity=-0.057 Sum_probs=78.4
Q ss_pred CcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc----------------------------------------hhhhhhh
Q 013219 59 STEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------------------------------HVFLSWF 98 (447)
Q Consensus 59 ~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------------------------------~~~~~~~ 98 (447)
..+.++..++..++..+|.++.|+++||+|||. +....+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888889999999999999999990 1112356
Q ss_pred hcccCCCCchhHHHH-HHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHH-hhcccCChH
Q 013219 99 LEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPR 164 (447)
Q Consensus 99 ~E~~p~~~Rg~~~~~-~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~ 164 (447)
.|..|++.||+..+. .+....+|..+++.+...+..+.+|+..|.+.++..++..+. ....||.++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 799999999998887 477778888877776655544567888888877777665544 445566443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=42.92 E-value=8.7 Score=19.70 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=11.5
Q ss_pred HHHHhhhhhCCcchh
Q 013219 79 AWGLVADNYGRSGHV 93 (447)
Q Consensus 79 ~~G~l~Dr~GRr~~~ 93 (447)
++|.+..+||||...
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 467889999998543
Done!