Query 013221
Match_columns 447
No_of_seqs 121 out of 271
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 01:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 2E-105 4E-110 797.4 26.7 403 1-447 2-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 5.6E-51 1.2E-55 417.6 29.3 378 10-439 2-385 (385)
3 COG0679 Predicted permeases [G 100.0 4.4E-28 9.6E-33 244.2 22.7 308 7-444 2-309 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.9 9.1E-26 2E-30 227.5 25.0 316 6-441 2-319 (321)
5 PRK09903 putative transporter 99.9 2E-23 4.3E-28 210.3 25.8 307 12-447 7-314 (314)
6 TIGR00841 bass bile acid trans 97.1 0.0018 3.9E-08 65.0 8.5 108 331-444 14-122 (286)
7 TIGR00841 bass bile acid trans 92.7 2.2 4.8E-05 42.9 13.1 133 10-161 137-273 (286)
8 PF01758 SBF: Sodium Bile acid 91.1 0.74 1.6E-05 43.1 7.2 106 333-443 6-112 (187)
9 COG0385 Predicted Na+-dependen 90.1 1.4 3E-05 45.3 8.6 104 333-444 46-152 (319)
10 PF13593 DUF4137: SBF-like CPA 83.4 2.7 5.8E-05 42.9 6.4 110 328-443 34-147 (313)
11 TIGR00832 acr3 arsenical-resis 82.3 7.7 0.00017 39.9 9.3 106 333-444 51-158 (328)
12 TIGR00832 acr3 arsenical-resis 78.5 5.1 0.00011 41.2 6.5 108 16-127 183-297 (328)
13 COG0385 Predicted Na+-dependen 74.8 13 0.00029 38.2 8.2 45 74-118 224-268 (319)
14 PRK11339 abgT putative aminobe 61.9 27 0.00058 38.3 7.6 80 13-94 89-174 (508)
15 PRK12460 2-keto-3-deoxyglucona 52.3 94 0.002 32.1 9.3 102 13-123 165-267 (312)
16 PF03806 ABG_transport: AbgT p 51.2 93 0.002 34.1 9.5 80 13-94 79-164 (502)
17 PF03812 KdgT: 2-keto-3-deoxyg 50.9 76 0.0016 32.7 8.3 108 11-126 168-276 (314)
18 PF05684 DUF819: Protein of un 45.7 1E+02 0.0022 32.5 8.6 132 14-164 240-372 (378)
19 TIGR00819 ydaH p-Aminobenzoyl- 39.9 2.3E+02 0.005 31.2 10.5 104 15-129 87-196 (513)
20 TIGR00939 2a57 Equilibrative N 39.9 5E+02 0.011 27.8 17.2 67 354-425 338-413 (437)
21 PF05684 DUF819: Protein of un 38.3 75 0.0016 33.5 6.3 78 17-97 28-109 (378)
22 TIGR00783 ccs citrate carrier 37.0 93 0.002 32.6 6.6 82 18-101 208-294 (347)
23 PRK11677 hypothetical protein; 36.7 38 0.00082 30.6 3.3 25 73-100 3-27 (134)
24 TIGR00793 kdgT 2-keto-3-deoxyg 33.6 1.5E+02 0.0033 30.5 7.4 105 11-123 168-273 (314)
25 PRK03818 putative transporter; 32.7 2.7E+02 0.0059 30.8 9.8 131 35-174 54-188 (552)
26 PF11120 DUF2636: Protein of u 32.1 73 0.0016 25.1 3.7 28 65-98 2-29 (62)
27 PF13593 DUF4137: SBF-like CPA 30.2 2E+02 0.0043 29.4 7.7 103 13-123 163-273 (313)
28 PF06305 DUF1049: Protein of u 28.9 78 0.0017 24.3 3.6 25 73-97 18-42 (68)
29 PF06295 DUF1043: Protein of u 28.6 55 0.0012 29.1 3.0 22 79-100 2-23 (128)
30 KOG3547 Bestrophin (Best vitel 26.7 22 0.00047 38.4 0.1 15 305-319 275-289 (450)
31 COG2323 Predicted membrane pro 25.8 1.5E+02 0.0033 29.1 5.7 80 14-100 8-87 (224)
32 COG0475 KefB Kef-type K+ trans 25.5 1.9E+02 0.0042 30.4 6.9 65 37-102 264-329 (397)
33 TIGR03802 Asp_Ala_antiprt aspa 25.1 3.2E+02 0.0069 30.3 8.7 151 10-173 8-189 (562)
34 TIGR02185 Trep_Strep conserved 25.0 80 0.0017 29.9 3.5 34 69-104 155-188 (189)
35 TIGR03082 Gneg_AbrB_dup membra 24.8 2.1E+02 0.0046 26.0 6.2 46 55-100 55-104 (156)
36 KOG2262 Sexual differentiation 24.8 12 0.00027 41.9 -2.2 101 58-171 432-535 (761)
37 PRK05274 2-keto-3-deoxyglucona 24.6 1.1E+02 0.0024 31.7 4.7 100 15-122 174-274 (326)
38 PRK05326 potassium/proton anti 24.4 4E+02 0.0087 29.3 9.4 97 22-124 252-350 (562)
39 COG3763 Uncharacterized protei 23.8 1.3E+02 0.0027 24.4 3.8 25 71-95 2-26 (71)
40 PF09605 Trep_Strep: Hypotheti 22.2 1E+02 0.0022 29.1 3.6 44 60-105 137-186 (186)
41 PF12534 DUF3733: Leucine-rich 22.1 1.1E+02 0.0024 24.3 3.2 43 61-103 12-59 (65)
42 PF03601 Cons_hypoth698: Conse 21.9 1.2E+02 0.0025 31.1 4.2 99 59-172 68-173 (305)
43 COG2855 Predicted membrane pro 21.8 1.2E+02 0.0026 31.5 4.3 98 59-171 78-181 (334)
44 PF09512 ThiW: Thiamine-precur 21.1 1.3E+02 0.0028 27.8 3.9 71 23-98 74-148 (150)
45 PF05145 AmoA: Putative ammoni 20.5 2.3E+02 0.0051 28.9 6.1 47 55-101 33-83 (318)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.8e-105 Score=797.40 Aligned_cols=403 Identities=50% Similarity=0.934 Sum_probs=342.6
Q ss_pred CchHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHH
Q 013221 1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN 78 (447)
Q Consensus 1 m~~~~l~~~a~--~pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~ 78 (447)
||+++++..|. +|++||++|+..|+++|++|.|+|++|+||.+|++||++|+|||+|+|+|+++|.|++.+|||||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHhhhH
Q 013221 79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 158 (447)
Q Consensus 79 ~ll~~~ig~~lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~vg~i 158 (447)
+.+++++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|+++++||||+|.|.+||++|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccchhhHHhhhhcCCCCCCccccCccccccccccccCCCCCCcccchhhccCCCCCCCCccccccccccc
Q 013221 159 FIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASH 238 (447)
Q Consensus 159 ~~ws~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (447)
++|||+||++.++..++...-++++.|...+ . .++ ++.+...|+++++..+ ++.+|++.+.
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~------~-~~~-~s~e~~~~~~~k~~ll----~~~en~~~~~------- 222 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLE------S-VPQ-PSVESDEDSTCKTLLL----ASKENRNNQV------- 222 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhh------c-cCC-CCcccccccccccccc----cccccCCCce-------
Confidence 9999999977776432221111001111000 0 000 0000000000110000 0111111111
Q ss_pred ccccchhhhhhhHH-HHHHHHHhhcChhHHHHHHHHHHhcchHHHHhhcCCCCChhhHHHHHHHhchhhhhhhhhhhccc
Q 013221 239 LQTRKESFWKRSLE-FLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGW 317 (447)
Q Consensus 239 ~~~~~~~~~~~l~~-~~~~~l~~~~~Pp~iaailgiiig~iPpLk~lf~~~~~pL~~i~dsi~~lG~~f~~~q~~~~~~~ 317 (447)
.+++++..+|.+. ..+..++++++||++|+++|+++|.|||||+++|++++|++++|||++++|
T Consensus 223 -~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG-------------- 287 (408)
T KOG2722|consen 223 -VGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLG-------------- 287 (408)
T ss_pred -eeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhc--------------
Confidence 1111112222211 223348999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCccchhhhhhhccccccccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCC-CChhhhHHHhh
Q 013221 318 LATSSFSYCRDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLMV 396 (447)
Q Consensus 318 ~~~~~~~~~~~a~IP~~llvLGa~L~~g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~-~Dpl~~FVl~l 396 (447)
|++|||++++|||||++|+++++++.+++++++++||+++|..|+++|..++|+|.++ |||+|+||++|
T Consensus 288 ----------~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllL 357 (408)
T KOG2722|consen 288 ----------DGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLL 357 (408)
T ss_pred ----------cccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccCCchhHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013221 397 QFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS 447 (447)
Q Consensus 397 ~~~~PpA~~l~~itql~~~~e~e~s~il~w~Y~v~~vslt~~~~~fl~l~~ 447 (447)
|+++|||||+++|||+||.+|+|||+++||+|+++.+++|+|+++|+|++.
T Consensus 358 q~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 358 QYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred hhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999973
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=5.6e-51 Score=417.65 Aligned_cols=378 Identities=29% Similarity=0.489 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 013221 10 ASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGIL 89 (447)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~~ig~~l 89 (447)
++++++++++++++||+++ |+|+++++.+|.+|++++++++|||+|++++++.+.+++.++|+++++..+.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHhhhHhhhhccccccc
Q 013221 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIK 169 (447)
Q Consensus 90 g~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~vg~i~~ws~~~~ll~ 169 (447)
+|++.|++|.|+++++....+|+|+|++++|+.++++++.+ +|.+|++++..++.++.|++++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999753 88999999999999999999999888
Q ss_pred cchhhHHhhhhcCCCCCC--ccccCccccccccccccCCCCCCc-ccchhhc-cCCCCCCCCccccc-ccccccccccch
Q 013221 170 QSSVRYKALAQAAEPEEV--PKEVNKDFDANAQTQLLRGTTDDQ-EDVSVLV-ASTKSSSDPECQII-VPQASHLQTRKE 244 (447)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 244 (447)
.+.++.++.+++.+..+. .+.+++++...++++ .+.++++ ++..... .+.+..+++..... .++.......+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (385)
T PF03547_consen 147 SRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSS--PSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQ 224 (385)
T ss_pred ccccccccccccccccccccccccCCccccCCccc--ccccccccccCCcccccccccccccchhhccCCcccccchhhh
Confidence 765443322211000000 000001110000000 0001110 0000000 00000000000000 000100001111
Q ss_pred hhhhhhHHHH-HHHHHhhcChhHHHHHHHHHHhcchHHHHhhcCCCCChhhHHHHHHHhchhhhhhhhhhhccccccccc
Q 013221 245 SFWKRSLEFL-HQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSF 323 (447)
Q Consensus 245 ~~~~~l~~~~-~~~l~~~~~Pp~iaailgiiig~iPpLk~lf~~~~~pL~~i~dsi~~lG~~f~~~q~~~~~~~~~~~~~ 323 (447)
+.+++.++.. +...+.++|||++|+++|++++++|++++++++ .+++++++++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg-------------------- 279 (385)
T PF03547_consen 225 KSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLG-------------------- 279 (385)
T ss_pred hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHH--------------------
Confidence 2222222222 233789999999999999999999999999987 79999999999
Q ss_pred cccCCccchhhhhhhccccccccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchh
Q 013221 324 SYCRDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPA 403 (447)
Q Consensus 324 ~~~~~a~IP~~llvLGa~L~~g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA 403 (447)
++++|++++++|++|+++++..+.+.+.....++.|++++|++++++++.+. -|+....+++++.++|||
T Consensus 280 ----~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l~~~~~~~~~~~~~~P~a 349 (385)
T PF03547_consen 280 ----AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG------LDGDMARVLILQAAMPTA 349 (385)
T ss_pred ----hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHhccCCch
Confidence 9999999999999999988777788888888899999999999999988664 256678899999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 013221 404 MNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS 439 (447)
Q Consensus 404 ~~l~~itql~~~~e~e~s~il~w~Y~v~~vslt~~~ 439 (447)
++...+|+.||..+++++..++|+|+++.+++|+|+
T Consensus 350 ~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 350 INSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.96 E-value=4.4e-28 Score=244.18 Aligned_cols=308 Identities=22% Similarity=0.326 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Q 013221 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (447)
Q Consensus 7 ~~~a~~pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~~ig 86 (447)
++..+.++++++++.+.||+++ |.|.++++..|.+|++++++.+|||+|++++++-..++ +++..++...+.+.+.+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4667899999999999999998 99999999999999999999999999999999987777 88888888788888888
Q ss_pred HHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHhhhHhhhhcccc
Q 013221 87 GILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (447)
Q Consensus 87 ~~lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~vg~i~~ws~~~~ 166 (447)
.+...+..|.++.++++++....+.+|+|++++++.+..++ | .++|++|.++++.+++++.|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~------G~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------F------GEKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------c------CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999998766655 3 3478999999999999999999987
Q ss_pred ccccchhhHHhhhhcCCCCCCccccCccccccccccccCCCCCCcccchhhccCCCCCCCCcccccccccccccccchhh
Q 013221 167 LIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESF 246 (447)
Q Consensus 167 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (447)
.+...+.+. +++.
T Consensus 146 ~l~~~~~~~-------------------------------------------------------------------~~~~ 158 (311)
T COG0679 146 LLARSGGGT-------------------------------------------------------------------NKSL 158 (311)
T ss_pred HHHHhcCCc-------------------------------------------------------------------hhHH
Confidence 554321000 0011
Q ss_pred hhhhHHHHHHHHHhhcChhHHHHHHHHHHhcchHHHHhhcCCCCChhhHHHHHHHhchhhhhhhhhhhcccccccccccc
Q 013221 247 WKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYC 326 (447)
Q Consensus 247 ~~~l~~~~~~~l~~~~~Pp~iaailgiiig~iPpLk~lf~~~~~pL~~i~dsi~~lG~~f~~~q~~~~~~~~~~~~~~~~ 326 (447)
++ ...+-+.||+.+|.++|++..... +.-. .++.++++++|
T Consensus 159 ~~-------~~~~~~~nP~i~a~i~g~~~~~~~------i~lP---~~~~~~~~~l~----------------------- 199 (311)
T COG0679 159 LS-------VLKKLLTNPLIIALILGLLLNLLG------ISLP---APLDTAVDLLA----------------------- 199 (311)
T ss_pred HH-------HHHHHHhCcHHHHHHHHHHHHHcC------CCCc---HHHHHHHHHHH-----------------------
Confidence 11 113445899999999999988655 1211 28999999999
Q ss_pred CCccchhhhhhhccccccccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchhHHH
Q 013221 327 RDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 406 (447)
Q Consensus 327 ~~a~IP~~llvLGa~L~~g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA~~l 406 (447)
++++|++++++|..|+. .+.++.+++.+......|+++.|++...+.+.. | + ++...-|+.++.++|+|.|-
T Consensus 200 -~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~---~-l--~~~~~~v~vl~~a~P~A~~~ 271 (311)
T COG0679 200 -SAASPLALIALGLSLAF-LKLKGSKPPIILIALSLKLLLAPLVALLVAKLL---G-L--SGLALQVLVLLSAMPTAVNA 271 (311)
T ss_pred -HhhhhHHHHHHhhhcch-hhhccccchhHHHHHHHHHHHHHHHHHHHHHHc---C-C--ChHHHHHHHHHhhCcHHhHH
Confidence 99999999999999988 556667778888888889999999999865543 3 3 34444899999999999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013221 407 GTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 444 (447)
Q Consensus 407 ~~itql~~~~e~e~s~il~w~Y~v~~vslt~~~~~fl~ 444 (447)
..+++-+|..++..+...+-|=..+.+++|.|..++.+
T Consensus 272 ~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 272 YVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998888888999999999999887765
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.95 E-value=9.1e-26 Score=227.53 Aligned_cols=316 Identities=18% Similarity=0.187 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHH
Q 013221 6 FFEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFL 84 (447)
Q Consensus 6 l~~~a~~pv~kVlli~~~G~~l-A~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~~ 84 (447)
.+|..+..++.++++.++||++ . |+|+++++..|.+|++++++.+|||+|+++++.-..++....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999999999 6 999999999999999999999999999999985433344445444454556677
Q ss_pred HHHHHHHHHHH-HhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHhhhHhhhhc
Q 013221 85 IGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSY 163 (447)
Q Consensus 85 ig~~lg~lv~k-~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~vg~i~~ws~ 163 (447)
..++++|++.| .+|.+++.++....++.++|++.+-+-+++++-. ++. ..+..|...+.....+..|++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G-------~~~---~~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFG-------EEG---AKILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhc-------ccc---hhhhHHHHHHHhccchhHHHH
Confidence 78899999998 8899999999999999999999999999999943 221 013566666666667788888
Q ss_pred cccccccchhhHHhhhhcCCCCCCccccCccccccccccccCCCCCCcccchhhccCCCCCCCCcccccccccccccccc
Q 013221 164 SYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRK 243 (447)
Q Consensus 164 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (447)
++.+...... ++ + + +.
T Consensus 150 ~~~~~~~~~~-----~~-------------------~-------------------------------------~---~~ 165 (321)
T TIGR00946 150 GLFLVSEDGA-----GG-------------------E-------------------------------------G---SG 165 (321)
T ss_pred HHHHhccccc-----cc-------------------c-------------------------------------c---cc
Confidence 8643321100 00 0 0 00
Q ss_pred hhhhhhhHHHHHHHHHhhcChhHHHHHHHHHHhcchHHHHhhcCCCCChhhHHHHHHHhchhhhhhhhhhhccccccccc
Q 013221 244 ESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSF 323 (447)
Q Consensus 244 ~~~~~~l~~~~~~~l~~~~~Pp~iaailgiiig~iPpLk~lf~~~~~pL~~i~dsi~~lG~~f~~~q~~~~~~~~~~~~~ 323 (447)
++.++...+.+ .+-+.||+.+|.++|+++...+. + -| .++.++++++|
T Consensus 166 ~~~~~~~~~~~---~~~~~nP~iia~i~Gl~~~~~~i-~-------lP-~~l~~~l~~lg-------------------- 213 (321)
T TIGR00946 166 ESTRLMLIFVW---KKLIKFPPLWAPLLSVILSLVGF-K-------MP-GLILKSISILS-------------------- 213 (321)
T ss_pred hhHHHHHHHHH---HHHHhCCChHHHHHHHHHHHHhh-c-------Cc-HHHHHHHHHHH--------------------
Confidence 01111122111 23347899999999999998763 1 11 58999999999
Q ss_pred cccCCccchhhhhhhccccccccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchh
Q 013221 324 SYCRDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPA 403 (447)
Q Consensus 324 ~~~~~a~IP~~llvLGa~L~~g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA 403 (447)
++++|+.++++|..+.. ++.+.+++.+...++.|+++.|++...+.+. ++-|+...-+++++.++|+|
T Consensus 214 ----~~~~plaLl~lG~~l~~--~~~~~~~~~~~~~~~~klil~P~i~~~~~~~------~~l~~~~~~~~vl~aa~P~a 281 (321)
T TIGR00946 214 ----GATTPMALFSLGLALSP--RKIKLGVRDAILALIVRFLVQPAVMAGISKL------IGLRGLELSVAILQAALPGG 281 (321)
T ss_pred ----HHHHHHHHHHHHHhhCh--hhhccChHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHcCChh
Confidence 99999999999999864 2233355778888999999999999776543 23478889999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013221 404 MNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMV 441 (447)
Q Consensus 404 ~~l~~itql~~~~e~e~s~il~w~Y~v~~vslt~~~~~ 441 (447)
.+-..+++-+|..+++.+...+++.+++.+++|+|+.+
T Consensus 282 ~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 282 AVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.92 E-value=2e-23 Score=210.27 Aligned_cols=307 Identities=17% Similarity=0.204 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013221 12 MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGW 91 (447)
Q Consensus 12 ~pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~~ig~~lg~ 91 (447)
..++-++++.++|+++. |+|+++++..|.+|++++++.+||++|+++.+. +.+++.+-|.+.+..++.++..++++|
T Consensus 7 ~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (314)
T PRK09903 7 GDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSW 83 (314)
T ss_pred HHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34566678999999997 999999999999999999999999999999875 667666445556777788888888888
Q ss_pred HHHH-HhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHhhhHhhhhcccccccc
Q 013221 92 IVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQ 170 (447)
Q Consensus 92 lv~k-~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~vg~i~~ws~~~~ll~~ 170 (447)
++.| .+|.+++.++....+++++|++.+-+-+++++ ||++.. -|+.|..++ .+.+++.|++|..+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~-~~~~~~~~~~g~~~~~~ 152 (314)
T PRK09903 84 FGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIIS-IIVNAITIPIGLYLLNP 152 (314)
T ss_pred HHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHH-HHHHHHHHHHHHHHHcc
Confidence 8875 66777777777888889999999999999998 343311 155555544 35788999998765543
Q ss_pred chhhHHhhhhcCCCCCCccccCccccccccccccCCCCCCcccchhhccCCCCCCCCcccccccccccccccchhhhhhh
Q 013221 171 SSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRS 250 (447)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (447)
.+. +++ ++++.++.+
T Consensus 153 ~~~-----~~~------------------------------------------------------------~~~~~~~~l 167 (314)
T PRK09903 153 SSG-----ADG------------------------------------------------------------KKNSNLSAL 167 (314)
T ss_pred ccc-----ccc------------------------------------------------------------ccchHHHHH
Confidence 210 000 000011111
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcchHHHHhhcCCCCChhhHHHHHHHhchhhhhhhhhhhccccccccccccCCcc
Q 013221 251 LEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDGT 330 (447)
Q Consensus 251 ~~~~~~~l~~~~~Pp~iaailgiiig~iPpLk~lf~~~~~pL~~i~dsi~~lG~~f~~~q~~~~~~~~~~~~~~~~~~a~ 330 (447)
.+-+-||+.+|.++|+++.+.. =.-| .++.++++++| +++
T Consensus 168 -------~~~~~nP~iia~~~gl~~~l~~--------i~lP-~~i~~~l~~lg------------------------~~~ 207 (314)
T PRK09903 168 -------ISAAKEPVVWAPVLATILVLVG--------VKIP-AAWDPTFNLIA------------------------KAN 207 (314)
T ss_pred -------HHHHhchHHHHHHHHHHHHHcC--------CCCC-HHHHHHHHHHH------------------------HHH
Confidence 2335789999999999976421 1111 58999999999 999
Q ss_pred chhhhhhhccccccccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchhHHHHHHH
Q 013221 331 IPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMT 410 (447)
Q Consensus 331 IP~~llvLGa~L~~g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA~~l~~it 410 (447)
+|+.++.+|++|++...+ .. +......+.|+++.|++...+... .|+ |+...=+++++.++|+|.+-..++
T Consensus 208 ~PlaL~~iG~~L~~~~~~--~~-~~~~~~~~~Kli~~P~i~~~~~~~---~~l---~~~~~~v~vl~aa~P~a~~~~i~A 278 (314)
T PRK09903 208 SGVAVFAAGLTLAAHKFE--FS-AEIAYNTFLKLILMPLALLLVGMA---CHL---NSEHLQMMVLAGALPPAFSGIIIA 278 (314)
T ss_pred HHHHHHHHHHHHhhcccc--cc-HHHHHHHHHHHHHHHHHHHHHHHH---cCC---CcHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999874221 22 344567778999999988655433 233 677778999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013221 411 QLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS 447 (447)
Q Consensus 411 ql~~~~e~e~s~il~w~Y~v~~vslt~~~~~fl~l~~ 447 (447)
+-+|...+..+...+.+-+++.+++|+|+.+ ++++|
T Consensus 279 ~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l-~~~~~ 314 (314)
T PRK09903 279 SRFNVYTRTGTASLAVSVLGFVVTAPLWIYV-SRLVS 314 (314)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhC
Confidence 9999888888888899999999999999986 55543
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.10 E-value=0.0018 Score=65.02 Aligned_cols=108 Identities=16% Similarity=0.135 Sum_probs=88.1
Q ss_pred chhhhhhhcccccc-ccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchhHHHHHH
Q 013221 331 IPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM 409 (447)
Q Consensus 331 IP~~llvLGa~L~~-g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA~~l~~i 409 (447)
+..+++.+|.++.. .+++...+++.+...++.|++++|+++..+.+.. +.||.+...+++..++|+|.+-..+
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------KLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHheeeCCCchHHHHH
Confidence 56788899999973 2333333557788888899999999997776533 4689999999999999999999999
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013221 410 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 444 (447)
Q Consensus 410 tql~~~~e~e~s~il~w~Y~v~~vslt~~~~~fl~ 444 (447)
|+.++...+..+.....+=+++++++|+|..++..
T Consensus 88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887766667777779999999999999988864
No 7
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.69 E-value=2.2 Score=42.86 Aligned_cols=133 Identities=15% Similarity=0.093 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhcc---chhhhhhhHHHHHhhccccchhhH-HHHHHHHHHHHHHHHH
Q 013221 10 ASMPIVQVLLISVLGALMATQYWNLLTADARRSLNK---MVFTVFTPSLMFASLAKTVTLEEI-ISWWFMPVNVAMTFLI 85 (447)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~---lv~~vFlP~LiFskla~~lt~~~l-~~~w~iPv~~ll~~~i 85 (447)
+.+ ..-+++-...|..+. |. . ++.+|.+.+ +... ++=++++.-++.+. +++ .+.|.+-+-.++...+
T Consensus 137 ~~~-~~~v~vPl~lG~~~r--~~--~-p~~~~~~~~~~~~s~~-~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 137 GLS-LVAVLIPVSIGMLVK--HK--L-PQIAKIILKVGLISVF-LLSVIIAVVGGINV--ENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHH-HHHHHHHHHHHHHHH--HH--h-HHHHHHHHhCchHHHH-HHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHH
Confidence 444 677888889999885 22 1 333333333 2221 22234444444332 222 2233344446778899
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHhhhHhhh
Q 013221 86 GGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIW 161 (447)
Q Consensus 86 g~~lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~vg~i~~w 161 (447)
|+.+||.+.|.+|.+++.+.-+.-.++..|++ +-+.+..+. |++ + ...-...|.......+.++.+
T Consensus 208 ~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~-~-~a~~~~~~~v~~~~~~~~~a~ 273 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP-E-VAVPSAIFPLIYALFQLAFAL 273 (286)
T ss_pred HHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888889999999988 444433322 332 1 222334555555555555443
No 8
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=91.12 E-value=0.74 Score=43.11 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=70.7
Q ss_pred hhhhhhcccccc-ccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchhHHHHHHHh
Q 013221 333 CITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQ 411 (447)
Q Consensus 333 ~~llvLGa~L~~-g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA~~l~~itq 411 (447)
.+++..|.++.. -.+...-++|.++..++..++++|+++.++.+.. .+.||-+..-+++..+.|.+...-.+|.
T Consensus 6 ~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~t~ 80 (187)
T PF01758_consen 6 LMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVFTY 80 (187)
T ss_dssp HHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 345566666642 1222223467788888999999999999997433 3678999999999999999999888888
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013221 412 LFDVAQEECSVLFLWTYLVAALALTGWSMVYM 443 (447)
Q Consensus 412 l~~~~e~e~s~il~w~Y~v~~vslt~~~~~fl 443 (447)
+.+-...-....-..+=..+.+.+|+|..+|.
T Consensus 81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcccccceeeHHHHHHHHHHHHHHHHHh
Confidence 76533222222334667999999999988775
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=90.15 E-value=1.4 Score=45.27 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=79.2
Q ss_pred hhhhhhcccccc-ccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchhHHHHHHHh
Q 013221 333 CITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQ 411 (447)
Q Consensus 333 ~~llvLGa~L~~-g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA~~l~~itq 411 (447)
.+++..|..|.+ -.+..-.+|+..+..++.-++++|++|.++.+... -||-..-=+++..|.|..++.-.+|+
T Consensus 46 lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~------l~~~l~~Gl~ll~~~Pggv~S~~~t~ 119 (319)
T COG0385 46 LIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP------LPPELAVGLLLLGCCPGGVASNAMTY 119 (319)
T ss_pred HHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHhHHheeeCCCchhHHHHHH
Confidence 566788888874 23345567889999999999999999999987543 58888888899999999999999998
Q ss_pred ccc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013221 412 LFD-V-AQEECSVLFLWTYLVAALALTGWSMVYMW 444 (447)
Q Consensus 412 l~~-~-~e~e~s~il~w~Y~v~~vslt~~~~~fl~ 444 (447)
+.+ + .=.-|++ .-+=++.++..|+++.+|+.
T Consensus 120 lAkGnValsV~~t--svStll~~f~tPllv~l~~~ 152 (319)
T COG0385 120 LAKGNVALSVCST--SVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HhcCcHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 773 2 2222333 35777888889998888763
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=83.40 E-value=2.7 Score=42.95 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=81.2
Q ss_pred Cccchhhhhhhcccccc-ccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchhHHH
Q 013221 328 DGTIPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 406 (447)
Q Consensus 328 ~a~IP~~llvLGa~L~~-g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA~~l 406 (447)
...|..+.++-|.+|.. .++..-..+|....+...=+++.|+++.++...... + .||-+..=+++..|+|+.++.
T Consensus 34 ~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S 109 (313)
T PF13593_consen 34 KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSS 109 (313)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhH
Confidence 44577788888988863 233445567888889999999999999998876642 3 355689999999999999887
Q ss_pred H-HHHhccc-chHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 013221 407 G-TMTQLFD-VAQEE-CSVLFLWTYLVAALALTGWSMVYM 443 (447)
Q Consensus 407 ~-~itql~~-~~e~e-~s~il~w~Y~v~~vslt~~~~~fl 443 (447)
+ .+|+..| +.... +.+. -+-++.++..|+|+..|+
T Consensus 110 ~v~~T~~AgGN~a~Al~~~~--~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 110 SVVLTRLAGGNVALALFNAV--LSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHcCCCHHHHHHHHH--HHhhhhHhHHHHHHHHHh
Confidence 5 5777554 33333 2222 578888999999998877
No 11
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=82.35 E-value=7.7 Score=39.87 Aligned_cols=106 Identities=12% Similarity=0.025 Sum_probs=74.7
Q ss_pred hhhhhhccccc-cccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchhHHHHHHHh
Q 013221 333 CITLILGGNLI-QGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQ 411 (447)
Q Consensus 333 ~~llvLGa~L~-~g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA~~l~~itq 411 (447)
++++..|.+|. +-.+..--.+|.++...+.-++++|+++.++.+.. .+.+|-+..=+++..|.|.+.....+|.
T Consensus 51 ~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~ 125 (328)
T TIGR00832 51 LMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQ 125 (328)
T ss_pred HHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 35667777775 22333334568899999999999999999887653 2557889999999999999988777777
Q ss_pred cccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 013221 412 LFDVAQEECSVLF-LWTYLVAALALTGWSMVYMW 444 (447)
Q Consensus 412 l~~~~e~e~s~il-~w~Y~v~~vslt~~~~~fl~ 444 (447)
+.+ |+...|..+ -.+=+++.+..|.+..+|+.
T Consensus 126 lAk-Gnvalsv~lt~~stLl~~~~~P~l~~ll~~ 158 (328)
T TIGR00832 126 LAK-GDPEYTLVLVAVNSLFQVFLYAPLAWLLLG 158 (328)
T ss_pred HcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 223333333 36666777777777766653
No 12
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=78.52 E-value=5.1 Score=41.18 Aligned_cols=108 Identities=16% Similarity=0.057 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhccC-----CCCHHHHhhhccchhhhhhhHHHHHhhccccc--hhhHHHHHHHHHHHHHHHHHHHH
Q 013221 16 QVLLISVLGALMATQYWN-----LLTADARRSLNKMVFTVFTPSLMFASLAKTVT--LEEIISWWFMPVNVAMTFLIGGI 88 (447)
Q Consensus 16 kVlli~~~G~~lA~~~~~-----iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt--~~~l~~~w~iPv~~ll~~~ig~~ 88 (447)
-+++-...|..+.+...+ ...++.++.++.+.. +++=..++...+.+-. .++..+.+.+-.-.++.+.+++.
T Consensus 183 ~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~ 261 (328)
T TIGR00832 183 YLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFF 261 (328)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 345556677766421111 111233344554443 2333344444444321 12222233333345678899999
Q ss_pred HHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHH
Q 013221 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (447)
Q Consensus 89 lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl 127 (447)
+||.+.|.+|.+++.+.-+.-+++-.|. ++++.-|.
T Consensus 262 lg~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~ 297 (328)
T TIGR00832 262 LTFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAI 297 (328)
T ss_pred HHHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHH
Confidence 9999999999999999999989888875 34444444
No 13
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=74.82 E-value=13 Score=38.20 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcch
Q 013221 74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGN 118 (447)
Q Consensus 74 ~iPv~~ll~~~ig~~lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~ 118 (447)
.+-+...++..+|+.+||...|.++.++..|.-+.-|++-.|.+.
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l 268 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL 268 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH
Confidence 456667888899999999999999999999999999999999863
No 14
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=61.92 E-value=27 Score=38.30 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHH------HHH
Q 013221 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTF------LIG 86 (447)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~------~ig 86 (447)
|-+.+.+++..|.-.| .|.|.++.-.||.+.+.-=...+|..+|.-+-+++-.|--. +-++|+.+.+.. +.|
T Consensus 89 ~pLG~vlv~mlgvgva-e~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~asdaGy-Vvl~PL~a~if~a~Gr~PlaG 166 (508)
T PRK11339 89 APLGAILALVLGAGLA-ERVGLLPALMVKMASHVNARYASYMVLFIAFFSHISSDAAL-VIMPPMGALIFLAVGRHPVAG 166 (508)
T ss_pred CcHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHcCCChHHH
Confidence 5578888888888787 59999999999999999999999998887777666533333 677888777766 556
Q ss_pred HHHHHHHH
Q 013221 87 GILGWIVV 94 (447)
Q Consensus 87 ~~lg~lv~ 94 (447)
.+.++..+
T Consensus 167 ia~~fagv 174 (508)
T PRK11339 167 LLAAIAGV 174 (508)
T ss_pred HHHHHHHH
Confidence 66666543
No 15
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=52.25 E-value=94 Score=32.05 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHH-HHHHHHHHHHHHHHH
Q 013221 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMP-VNVAMTFLIGGILGW 91 (447)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iP-v~~ll~~~ig~~lg~ 91 (447)
+++..++-..+|.++. | ++++.|+.+++=+- +..|-.+ --++.+++++++.+.++-- +..++...+...+++
T Consensus 165 ~lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~-f~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG----N-LDPDMRKFLTKGGP-LLIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh----c-cchhhHHHHhccce-EeHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4466788889999885 4 77777777776533 2444333 4589999999999986433 334556677888888
Q ss_pred HHHHHhCCCCCCCCeeEEEeecCCcchhHHHH
Q 013221 92 IVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123 (447)
Q Consensus 92 lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~l 123 (447)
.+.|.+|.+++. ....+...||.--=|-++
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAV 267 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAI 267 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHH
Confidence 888999877554 233333467765555553
No 16
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=51.18 E-value=93 Score=34.14 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHH------HHH
Q 013221 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTF------LIG 86 (447)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~------~ig 86 (447)
|-+.+++++..|.=.| +|.|+++.-.||.+.+.-=.+.+|.++|.-+-+++-.|-- -+-.+|+-.++.. +.|
T Consensus 79 ~PLG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasDAg-~Vvl~PL~a~iF~~~GRhPlaG 156 (502)
T PF03806_consen 79 PPLGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASDAG-YVVLPPLAAMIFAAVGRHPLAG 156 (502)
T ss_pred CcHHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhcccccce-eEeHHhhHHHHHHHcCCChHHH
Confidence 5577888888888778 6999999999999999999999999999999999865543 2335777666655 677
Q ss_pred HHHHHHHH
Q 013221 87 GILGWIVV 94 (447)
Q Consensus 87 ~~lg~lv~ 94 (447)
...|+..+
T Consensus 157 i~~afa~v 164 (502)
T PF03806_consen 157 IAAAFAGV 164 (502)
T ss_pred HHHHHHHH
Confidence 88877754
No 17
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=50.94 E-value=76 Score=32.71 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHH-HHHHHHHHHHHH
Q 013221 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPV-NVAMTFLIGGIL 89 (447)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv-~~ll~~~ig~~l 89 (447)
.++.+-+++-..+|.++ |=+|+|.||.+++-+ .+..|-+-| .++..++++++.+=..-=+ -.++++.++...
T Consensus 168 ~~~lv~~llP~iiG~iL-----GNLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMIL-----GNLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHH-----hcCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 57788888999999988 578999999999865 566787777 4999999999998763222 234455556666
Q ss_pred HHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHH
Q 013221 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126 (447)
Q Consensus 90 g~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~s 126 (447)
.++.-|..+-. +=....-+.+..||.-.-|-++-++
T Consensus 241 ~~~~dr~i~~~-~g~aG~A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 241 LYLADRLILKG-NGVAGAAISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHHHcCC-CCceeehHHhhhhhhhhhhHHHHHh
Confidence 67777765322 1222334456789999999885443
No 18
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=45.68 E-value=1e+02 Score=32.53 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCH-HHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013221 14 IVQVLLISVLGALMATQYWNLLTA-DARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWI 92 (447)
Q Consensus 14 v~kVlli~~~G~~lA~~~~~iL~~-~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~~ig~~lg~l 92 (447)
..-+++++..|...+ ....... .....++....++ .|.-+|..-+++++.+-..+.+..++...+-.++=++
T Consensus 240 ~~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~-----ffa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYL-----FFAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHH-----HHHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777665 3333333 4556666666655 4788999999999999544555566666777778888
Q ss_pred HHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHhhhHhhhhcc
Q 013221 93 VVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYS 164 (447)
Q Consensus 93 v~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~vg~i~~ws~~ 164 (447)
+.|++|.| ...+.-+.-.|+|.=+.+-+.|-++. .+=..-|+.--.+.-++|+.+-+..+
T Consensus 313 ~~kl~k~~----l~~~~vAS~AnIGGpaTA~a~A~a~~--------~~Lv~pgvL~gvlGyaiGty~G~~va 372 (378)
T PF05684_consen 313 LGKLFKID----LFELLVASNANIGGPATAPAVAAAKG--------PSLVPPGVLMGVLGYAIGTYLGLAVA 372 (378)
T ss_pred HHHHHCCC----HHHHHHHhhcccCCcchHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 55556666677777777644444331 11233455555555566665544443
No 19
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=39.90 E-value=2.3e+02 Score=31.23 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHH------HHHHH
Q 013221 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTF------LIGGI 88 (447)
Q Consensus 15 ~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~------~ig~~ 88 (447)
+.++++..+|+-.| .|.|.++.-.||.++|.-=...+|..+|.-+-+++-.|-- -+-++|+.+.+.. +.|.+
T Consensus 87 Lg~vlv~mlGvGva-e~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~asdaG-~vvl~PL~a~if~a~Gr~PlaGia 164 (513)
T TIGR00819 87 LGAILALLLGAGIA-EKSGLIPALMRKLASHSNAKLASFMVLFIAFFSHIASDAA-LVILIPLGALIFHALGRHPLAGLA 164 (513)
T ss_pred HHHHHHHHHHHHHH-HHhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHcCCChHHHHH
Confidence 44555555565556 5999999999999999999999998887766666543332 2778888777766 56667
Q ss_pred HHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhh
Q 013221 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICH 129 (447)
Q Consensus 89 lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~ 129 (447)
.++..+- ++..+.-.-+=++-+-..+-|..++
T Consensus 165 ~~fagvs---------~GFsAnl~~~~~Dpll~Git~~aA~ 196 (513)
T TIGR00819 165 AAFAGVG---------CGFSANLFIGTIDPLLAGISQEAAA 196 (513)
T ss_pred HHHHHHh---------hhhhcccccccccHHHHHHHHHHHH
Confidence 6666441 2222222222334445556666665
No 20
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=39.89 E-value=5e+02 Score=27.76 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=35.6
Q ss_pred cchhhhHHHHHHHHhHHHHHHHHHHHHhC-CCCCChhhhHHHhhccCCchhHHHHHHHh--------cccchHHHHHHHH
Q 013221 354 LIIIAVVCVRYIALPFIGVWVVKAAAALG-FLPSDPLYHYVLMVQFTLPPAMNIGTMTQ--------LFDVAQEECSVLF 424 (447)
Q Consensus 354 ~~iv~iv~~RliilPiigv~iv~~~~~~g-~~~~Dpl~~FVl~l~~~~PpA~~l~~itq--------l~~~~e~e~s~il 424 (447)
+.+....+.|++..|++-+..+.-=.+.. ++++|=.+ +++++.++ .+-++++. ..+..|+|.+..+
T Consensus 338 ~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~-~~~~~l~g----ltnGy~~s~~m~~~p~~v~~~e~e~aG~~ 412 (437)
T TIGR00939 338 RWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYF-IILMLLFG----FSNGYLGSLSMCLAPRQVDPHEREVAGAL 412 (437)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHH-HHHHHHHH----HhhhHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 36777889999999998544322101111 44555433 33344333 33344442 2355788866554
Q ss_pred H
Q 013221 425 L 425 (447)
Q Consensus 425 ~ 425 (447)
.
T Consensus 413 ~ 413 (437)
T TIGR00939 413 M 413 (437)
T ss_pred H
Confidence 3
No 21
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=38.31 E-value=75 Score=33.46 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHH----HHHHHHHHHHHHHHHH
Q 013221 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMP----VNVAMTFLIGGILGWI 92 (447)
Q Consensus 17 Vlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iP----v~~ll~~~ig~~lg~l 92 (447)
++++...|.+++ ..|++|.+....+.+.+.+.++|.-++-=+ -+.+++++.+...=. +...+.+++|..+++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888 899996666667778888888877665433 245666666655333 3334555666666666
Q ss_pred HHHHh
Q 013221 93 VVKLL 97 (447)
Q Consensus 93 v~k~~ 97 (447)
+.+-.
T Consensus 105 l~~~~ 109 (378)
T PF05684_consen 105 LFGGF 109 (378)
T ss_pred HHhhc
Confidence 55544
No 22
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=37.03 E-value=93 Score=32.56 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhccCCCCHHHHhhh---ccchhhhhhhHHHHHhhccccchhhHHHHHHHHHH-HHHHHHHHHH-HHHH
Q 013221 18 LLISVLGALMATQYWNLLTADARRSL---NKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIGGI-LGWI 92 (447)
Q Consensus 18 lli~~~G~~lA~~~~~iL~~~~~k~l---S~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~-~ll~~~ig~~-lg~l 92 (447)
..+...|+++. ..|+++++..... +|.+...+++.+++.==....+++++.+.-=.|.. .++...+|.. .+++
T Consensus 208 v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 208 AFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 44566777776 8999998876554 44555667777766322245789998886412222 2333345544 4457
Q ss_pred HHHHhCCCC
Q 013221 93 VVKLLRPKP 101 (447)
Q Consensus 93 v~k~~r~p~ 101 (447)
+.|+++.=|
T Consensus 286 vGKllG~YP 294 (347)
T TIGR00783 286 LGKLMGMYP 294 (347)
T ss_pred HHHHhCCCh
Confidence 888888753
No 23
>PRK11677 hypothetical protein; Provisional
Probab=36.69 E-value=38 Score=30.64 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013221 73 WFMPVNVAMTFLIGGILGWIVVKLLRPK 100 (447)
Q Consensus 73 w~iPv~~ll~~~ig~~lg~lv~k~~r~p 100 (447)
|++++ +.+++|.++|+++.|++...
T Consensus 3 W~~a~---i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYAL---IGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHH---HHHHHHHHHHHHHHhhccch
Confidence 55444 78899999999999986544
No 24
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=33.63 E-value=1.5e+02 Score=30.52 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHH-HHHHHHHHHHHHHHH
Q 013221 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF-MPVNVAMTFLIGGIL 89 (447)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~-iPv~~ll~~~ig~~l 89 (447)
.+..+-+++-..+|+++ |=||+|.||.+++-. .+..|-.-| .++..++++++.+=.. --+-.+++..++...
T Consensus 168 ~~~lv~~ilPlliG~il-----GNLD~~~r~fl~~~~-~~lIpFf~F-aLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 168 PHVFVGAVLPFLVGFAL-----GNLDPELRDFFSKAV-QTLIPFFAF-ALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHH-----hcCCHHHHHHhccCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 45677778888899988 578999999999854 566777777 4999999999977643 222235566677777
Q ss_pred HHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHH
Q 013221 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123 (447)
Q Consensus 90 g~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~l 123 (447)
.++.-|++.-.+.. .+.-+....||.-.-|-++
T Consensus 241 ~~~~dr~~~g~~g~-aG~A~sstAGnAvatPaav 273 (314)
T TIGR00793 241 LILADKFIGGGDGT-AGIAASSSAGAAVATPVLI 273 (314)
T ss_pred HHHHHHHhcCCCCc-hhhHHHHHHHHhhhhHHHH
Confidence 88888887421111 2334445678888888773
No 25
>PRK03818 putative transporter; Validated
Probab=32.68 E-value=2.7e+02 Score=30.81 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=67.7
Q ss_pred CCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeec
Q 013221 35 LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCAS 113 (447)
Q Consensus 35 L~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~-w~iPv~~ll~~~ig~~lg~lv~k~~r~p~~~~~~vi~~~~f 113 (447)
+++.+...+.++-+.+|+=|. -.+-+++. .+++++. |-..+..++.++++.+++|+..++++.++. ..+....
T Consensus 54 ~~~~~~~~~~~~gl~lFv~~v-Gl~~Gp~f-~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~a 127 (552)
T PRK03818 54 LDSDMLHFIQEFGLILFVYTI-GIQVGPGF-FSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLP----VMLGIFS 127 (552)
T ss_pred cChHHHHHHHHHHHHHHHHHH-hhcccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHhh
Confidence 445555556666666665442 22233333 2244442 444556678888899999999999999843 3333333
Q ss_pred CCcchhHH-HH-HHHHhhcCCCC-CCCchhhhhhhHHHHHHHHHhhhHhhhhccccccccchhh
Q 013221 114 GNLGNLLL-II-VPAICHEQGSP-FGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVR 174 (447)
Q Consensus 114 gN~~~LPl-~l-v~sl~~~~~~p-f~~~~~~~~~G~aY~~~~~~vg~i~~ws~~~~ll~~~~~~ 174 (447)
|-.+|=|- +- .+++. +.+.. -..++....++++|.. -.++.++.-.+..++++.+.++
T Consensus 128 Ga~T~tp~l~aa~~~~~-~~~~~~~~~~~~a~gYa~~Yp~--g~i~~il~~~~~~~~~~~~~~~ 188 (552)
T PRK03818 128 GAVTNTPALGAGQQILR-DLGTPGDLVDQMGMGYAMAYPF--GICGILLSMWLIRLIFRINVDK 188 (552)
T ss_pred ccccccHHHHHHHHHHh-ccCCCccccCCcchhhHhHhHH--HHHHHHHHHHHHHHHhCCChHH
Confidence 44444342 22 22221 11110 0112335667777743 2345543333667777776543
No 26
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=32.07 E-value=73 Score=25.14 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013221 65 TLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLR 98 (447)
Q Consensus 65 t~~~l~~~w~iPv~~ll~~~ig~~lg~lv~k~~r 98 (447)
+++|+.++ ++++.++.+.+||+..+.++
T Consensus 2 ~i~DiiQi------i~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 2 NISDIIQI------IILCALIFFPLGYLARRWLP 29 (62)
T ss_pred CHHHHHHH------HHHHHHHHHhHHHHHHHHhH
Confidence 57888887 44566667777777776544
No 27
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=30.21 E-value=2e+02 Score=29.39 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHH---HhhhccchhhhhhhHHHHHhhccccchh---hH--HHHHHHHHHHHHHHH
Q 013221 13 PIVQVLLISVLGALMATQYWNLLTADA---RRSLNKMVFTVFTPSLMFASLAKTVTLE---EI--ISWWFMPVNVAMTFL 84 (447)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~~iL~~~~---~k~lS~lv~~vFlP~LiFskla~~lt~~---~l--~~~w~iPv~~ll~~~ 84 (447)
=++++++-...|-++. . .+.+.. +|.+++ .=...+-.++++...++..-+ ++ .+...+-...+....
T Consensus 163 L~~~vllP~~~Gq~~r---~-~~~~~~~~~~~~~~~-~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLR---R-WVPKWVARHKKPLSL-LSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL 237 (313)
T ss_pred HHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence 3456777777788663 1 233332 222222 233444556666666553211 11 223333333556667
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHH
Q 013221 85 IGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123 (447)
Q Consensus 85 ig~~lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~l 123 (447)
+.+.++|...|.++.+++.+--++-|++- .|+|+++
T Consensus 238 ~~l~~~~~~~r~~~~~~~d~iA~~F~gs~---Ksl~~gv 273 (313)
T PF13593_consen 238 VVLVLGWLAARLLGFSRPDRIAVLFCGSQ---KSLALGV 273 (313)
T ss_pred HHHHHHHHHHhhcCCChhhEEEEEEEcCc---CcchhHH
Confidence 78899999999999998887766666653 3445554
No 28
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.91 E-value=78 Score=24.26 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013221 73 WFMPVNVAMTFLIGGILGWIVVKLL 97 (447)
Q Consensus 73 w~iPv~~ll~~~ig~~lg~lv~k~~ 97 (447)
++..+.+++++++|.++||+.....
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888999999999887553
No 29
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.64 E-value=55 Score=29.09 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 013221 79 VAMTFLIGGILGWIVVKLLRPK 100 (447)
Q Consensus 79 ~ll~~~ig~~lg~lv~k~~r~p 100 (447)
+++.+++|.++|+++.|++...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5678899999999999987765
No 30
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=26.74 E-value=22 Score=38.36 Aligned_cols=15 Identities=40% Similarity=0.950 Sum_probs=13.8
Q ss_pred hhhhhhhhhhccccc
Q 013221 305 VFVSAQFYCFVGWLA 319 (447)
Q Consensus 305 ~f~~~q~~~~~~~~~ 319 (447)
+|+++|++++|||+-
T Consensus 275 i~T~lQFiF~vGWmK 289 (450)
T KOG3547|consen 275 IMTILQFIFYVGWLK 289 (450)
T ss_pred hHHHHHHHHHhhHHH
Confidence 899999999999983
No 31
>COG2323 Predicted membrane protein [Function unknown]
Probab=25.79 E-value=1.5e+02 Score=29.09 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013221 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIV 93 (447)
Q Consensus 14 v~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~~ig~~lg~lv 93 (447)
++|.+++..+++++. | --+||++|+|...=|.=.++...++.....+.=...|..-+.+++..++..++.|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666554 3 367899999999999999999999999988876666666666666677788888887
Q ss_pred HHHhCCC
Q 013221 94 VKLLRPK 100 (447)
Q Consensus 94 ~k~~r~p 100 (447)
.|--++-
T Consensus 81 ~ks~~~r 87 (224)
T COG2323 81 LKSRKLR 87 (224)
T ss_pred hccHHHH
Confidence 7665544
No 32
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=25.47 E-value=1.9e+02 Score=30.43 Aligned_cols=65 Identities=14% Similarity=0.245 Sum_probs=48.8
Q ss_pred HHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCC
Q 013221 37 ADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVA-MTFLIGGILGWIVVKLLRPKPH 102 (447)
Q Consensus 37 ~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~l-l~~~ig~~lg~lv~k~~r~p~~ 102 (447)
++..+++..+...+|.| +-|.++|-+++++.+.+.|..-+... +....=....++..|.++.+++
T Consensus 264 ~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~ 329 (397)
T COG0475 264 HELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSKR 329 (397)
T ss_pred HHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 57888898888888888 77999999999999999887733333 3334444557888899985543
No 33
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=25.07 E-value=3.2e+02 Score=30.33 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhccc-hhhhhhhHHHHHhhccccch----------------------
Q 013221 10 ASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKM-VFTVFTPSLMFASLAKTVTL---------------------- 66 (447)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~l-v~~vFlP~LiFskla~~lt~---------------------- 66 (447)
.-+|++=+++++++|+++. |.++ |.+|== +--++.=.|++..++.++..
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~vG~~~Gp~F 79 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGYEVGPQF 79 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCHHH
Confidence 4589999999999999987 5544 222211 11222334444555444322
Q ss_pred -hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCC-----Cch
Q 013221 67 -EEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFG-----NRD 139 (447)
Q Consensus 67 -~~l~~~-w~iPv~~ll~~~ig~~lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~~~pf~-----~~~ 139 (447)
+++++= |..-+..++..++|.++.|...|++..|+..-.++. |++--|+-.|=-+ .+++.+- +..-. ..+
T Consensus 80 f~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~-aGalT~tp~l~aA-~~a~~~~-~~~~~~~~~~~~~ 156 (562)
T TIGR03802 80 FASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLA-AGGLTQSAVIGTA-GDAIEKL-GLSPEQKTAYQGN 156 (562)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-hchhhccHHHHHH-HHHHHhc-CCCcchhhccccc
Confidence 233331 333444566668889999999999999955444433 3444455555333 4555321 11100 112
Q ss_pred hhhhhhHHHHHHHHHhhhHhhhh-ccccccccchh
Q 013221 140 VCSSVGLSYASFSMALGGFFIWS-YSYQLIKQSSV 173 (447)
Q Consensus 140 ~~~~~G~aY~~~~~~vg~i~~ws-~~~~ll~~~~~ 173 (447)
....++++|. +-.+|.++... ..++++|.+.+
T Consensus 157 ~avgYav~Yp--fGvig~i~~~~~~~p~l~~~~~~ 189 (562)
T TIGR03802 157 VAVAYAVTYI--FGTIGVIIVLVNILPWLMGIDLR 189 (562)
T ss_pred cceeeehhhh--hHHHHHHHHHHHHHHHHhCCChH
Confidence 3466777774 33466664433 35567776644
No 34
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=24.99 E-value=80 Score=29.88 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 013221 69 IISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLE 104 (447)
Q Consensus 69 l~~~w~iPv~~ll~~~ig~~lg~lv~k~~r~p~~~~ 104 (447)
..+.|.+++..+.+++.|.+-+++..|++| ||++
T Consensus 155 ~~~~~~~~~~~~~t~v~~~iG~~iG~kllk--KHF~ 188 (189)
T TIGR02185 155 YVSAIWAVIMIVLTAVAGIAGVLIGKKLLK--KHFE 188 (189)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcC
Confidence 335588888888888888777888888875 5654
No 35
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=24.84 E-value=2.1e+02 Score=25.98 Aligned_cols=46 Identities=13% Similarity=0.353 Sum_probs=34.3
Q ss_pred HHHHhhccccchhhHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013221 55 LMFASLAKTVTLEEIIS---WWF-MPVNVAMTFLIGGILGWIVVKLLRPK 100 (447)
Q Consensus 55 LiFskla~~lt~~~l~~---~w~-iPv~~ll~~~ig~~lg~lv~k~~r~p 100 (447)
++-..+|..+|.|++++ +|. .-+..+++..++.+.+|+..|.++.|
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~ 104 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVD 104 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45678899998777655 333 33444666688999999999999988
No 36
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=24.82 E-value=12 Score=41.92 Aligned_cols=101 Identities=17% Similarity=0.345 Sum_probs=67.0
Q ss_pred HhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCeeEEEeecCCcchhHHHHHHHHhhcC-CCC
Q 013221 58 ASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPK--PHLEGLVIATCASGNLGNLLLIIVPAICHEQ-GSP 134 (447)
Q Consensus 58 skla~~lt~~~l~~~w~iPv~~ll~~~ig~~lg~lv~k~~r~p--~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~-~~p 134 (447)
+||=|. .+++-+||+.-+ .+++.++|...+...+-- -++ .+++.||+++=...+|+.++||...+. |.
T Consensus 432 trlMkk--YKeVP~WWf~~i-----li~s~~l~~~~~~~~~~~~q~Pw-Wg~~va~~ia~vf~iPigii~AtTNq~~GL- 502 (761)
T KOG2262|consen 432 TRLMKK--YKEVPDWWFLAI-----LIVSLGLGLAACEGYKTQVQLPW-WGLLVACAIAFVFTIPIGIIQATTNQTPGL- 502 (761)
T ss_pred HHHHHH--hccCcHHHHHHH-----HHHHHHHHhhheeeecccccCch-HHHHHHHHHHHHHhccHHHhhhhccCCccH-
Confidence 344444 677778887554 344555666666665542 223 345667888889999999999997642 32
Q ss_pred CCCchhhhhhhHHHHHHHHHhhhHhhhhccccccccc
Q 013221 135 FGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQS 171 (447)
Q Consensus 135 f~~~~~~~~~G~aY~~~~~~vg~i~~ws~~~~ll~~~ 171 (447)
+...|.=+.|+.=...+.+++.-+|||.-+++.
T Consensus 503 ----NiitE~i~Gy~~PgrPiAn~~FK~yGyism~Qa 535 (761)
T KOG2262|consen 503 ----NIITEYIIGYIYPGRPIANLCFKTYGYISMTQA 535 (761)
T ss_pred ----HHHHHHHHHhhcCCchHHHHHHHHhchhhHHHH
Confidence 234455566766666888999999999766654
No 37
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=24.65 E-value=1.1e+02 Score=31.68 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 013221 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIV 93 (447)
Q Consensus 15 ~kVlli~~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~-w~iPv~~ll~~~ig~~lg~lv 93 (447)
+.+++...+|..+. | ++++.++..++= .++.+|+-.|. +|.+++++++.+- +.-++-.+...++...+++..
T Consensus 174 i~allplliG~~lg----n-l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG----N-LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH----h-HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 56668999999885 4 777777766664 44599999988 9999999999887 445554444445555557777
Q ss_pred HHHhCCCCCCCCeeEEEeecCCcchhHHH
Q 013221 94 VKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (447)
Q Consensus 94 ~k~~r~p~~~~~~vi~~~~fgN~~~LPl~ 122 (447)
-|+++..+...+. -...+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g~-a~~ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAGA-AAGSTAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcchH-HHHHHHHHHHHHHHH
Confidence 7888554332222 223345555444444
No 38
>PRK05326 potassium/proton antiporter; Reviewed
Probab=24.40 E-value=4e+02 Score=29.26 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=54.6
Q ss_pred HHHHHHHhhccCCCCHHHHhhhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHhCC
Q 013221 22 VLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNV-AMTFLIG-GILGWIVVKLLRP 99 (447)
Q Consensus 22 ~~G~~lA~~~~~iL~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~-ll~~~ig-~~lg~lv~k~~r~ 99 (447)
..|..++ +.....++..++..+..-.++.|. +|..+|-.++++++.+.|..-+.+ ++..+++ .+..++..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4566565 333334444444445455667755 799999999999988765322211 1222233 2333444566777
Q ss_pred CCCCCCeeEEEeecCCcchhHHHHH
Q 013221 100 KPHLEGLVIATCASGNLGNLLLIIV 124 (447)
Q Consensus 100 p~~~~~~vi~~~~fgN~~~LPl~lv 124 (447)
|.+.+-++--+ |-=|..|+++-
T Consensus 329 ~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 329 NLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CHhhhheeeee---cchhHHHHHHH
Confidence 76655444433 45777887654
No 39
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.75 E-value=1.3e+02 Score=24.42 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013221 71 SWWFMPVNVAMTFLIGGILGWIVVK 95 (447)
Q Consensus 71 ~~w~iPv~~ll~~~ig~~lg~lv~k 95 (447)
++|..-+.++++.++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455558888899999999987764
No 40
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=22.20 E-value=1e+02 Score=29.09 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=30.1
Q ss_pred hccccchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 013221 60 LAKTVTLE------EIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEG 105 (447)
Q Consensus 60 la~~lt~~------~l~~~w~iPv~~ll~~~ig~~lg~lv~k~~r~p~~~~~ 105 (447)
..+..+.| +..+.|.+++..+++++.|.+-+++-.|++| ||+++
T Consensus 137 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk--KHF~K 186 (186)
T PF09605_consen 137 IAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK--KHFEK 186 (186)
T ss_pred HHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCC
Confidence 34455555 6667788888777777777777777778765 66653
No 41
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=22.10 E-value=1.1e+02 Score=24.33 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=32.2
Q ss_pred ccccchhhHHHHH--HHHHHHHHHHHHHHHHHHHHH---HHhCCCCCC
Q 013221 61 AKTVTLEEIISWW--FMPVNVAMTFLIGGILGWIVV---KLLRPKPHL 103 (447)
Q Consensus 61 a~~lt~~~l~~~w--~iPv~~ll~~~ig~~lg~lv~---k~~r~p~~~ 103 (447)
..+.+.+.+|-|| ++|=..++..++|.+.|-.-. |+...|.+.
T Consensus 12 ~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~~~~~~clP~~~ 59 (65)
T PF12534_consen 12 ENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLTQDKIVCLPCTS 59 (65)
T ss_pred hhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhccccceeCCCcc
Confidence 4566789999999 888888888888888775544 566777554
No 42
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=21.89 E-value=1.2e+02 Score=31.10 Aligned_cols=99 Identities=12% Similarity=0.221 Sum_probs=58.5
Q ss_pred hhccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcC----C
Q 013221 59 SLAKTVTLEEIISWWFM-PVNVAMTFLIGGILGWIVV-KLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQ----G 132 (447)
Q Consensus 59 kla~~lt~~~l~~~w~i-Pv~~ll~~~ig~~lg~lv~-k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~----~ 132 (447)
=+|-+++++++.+++.- -+..++.......+++.+. |.+|+|+++.-.+ +++ .|+|... -
T Consensus 68 LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Li-a~G-------------tsICG~SAi~A~ 133 (305)
T PF03601_consen 68 LLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILI-AAG-------------TSICGASAIAAT 133 (305)
T ss_pred HHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-Hhh-------------cccchHHHHHHH
Confidence 37899999999999873 3335566677778888888 9999997765433 221 1233321 0
Q ss_pred CC-CCCchhhhhhhHHHHHHHHHhhhHhhhhccccccccch
Q 013221 133 SP-FGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSS 172 (447)
Q Consensus 133 ~p-f~~~~~~~~~G~aY~~~~~~vg~i~~ws~~~~ll~~~~ 172 (447)
.| -+.+|+.....++-+.++-.+. ++.+-+-++.+..++
T Consensus 134 a~~i~a~~~~~a~ava~V~lfg~va-m~~~P~l~~~l~l~~ 173 (305)
T PF03601_consen 134 APVIKAKEEDVAYAVATVFLFGTVA-MFLYPLLGHALGLSP 173 (305)
T ss_pred cccccCCCCceeeeehHHHHHHHHH-HHHHHHHHHHhCCCH
Confidence 11 1222334455555555555543 355666666666553
No 43
>COG2855 Predicted membrane protein [Function unknown]
Probab=21.77 E-value=1.2e+02 Score=31.52 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=62.0
Q ss_pred hhccccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcC----CC
Q 013221 59 SLAKTVTLEEIISWWFMPVN-VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQ----GS 133 (447)
Q Consensus 59 kla~~lt~~~l~~~w~iPv~-~ll~~~ig~~lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~lv~sl~~~~----~~ 133 (447)
=+|-++|++++.+.+.=-+- .+++...+.++++.+.|.++.||+.--.+=+.+ |+|... -+
T Consensus 78 LlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~Gs--------------sICGasAiaA~~ 143 (334)
T COG2855 78 LLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGS--------------SICGASAIAATA 143 (334)
T ss_pred HHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccc--------------hhhHHHHHHHhC
Confidence 37899999999999843222 455667788899999999999987755443222 234321 12
Q ss_pred C-CCCchhhhhhhHHHHHHHHHhhhHhhhhccccccccc
Q 013221 134 P-FGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQS 171 (447)
Q Consensus 134 p-f~~~~~~~~~G~aY~~~~~~vg~i~~ws~~~~ll~~~ 171 (447)
| .+.+|+.....++-+.++-.++. +.|.+-|+++.-+
T Consensus 144 pvika~~~eva~aIa~V~lfgtia~-llyP~l~~~l~l~ 181 (334)
T COG2855 144 PVIKAEEEEVAVAIAVVVLFGTLAM-LLYPLLYPLLGLS 181 (334)
T ss_pred CcCCCCccccceehhhHHHHHHHHH-HHHHHHHHHhCCC
Confidence 2 22344456667777776666554 5566666666544
No 44
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=21.15 E-value=1.3e+02 Score=27.83 Aligned_cols=71 Identities=31% Similarity=0.534 Sum_probs=52.5
Q ss_pred HHHHHHhhccCCCCHHHHh----hhccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013221 23 LGALMATQYWNLLTADARR----SLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLR 98 (447)
Q Consensus 23 ~G~~lA~~~~~iL~~~~~k----~lS~lv~~vFlP~LiFskla~~lt~~~l~~~w~iPv~~ll~~~ig~~lg~lv~k~~r 98 (447)
.|++++ |++=+.++| .+....-+-..=+++-.-+++-+.-++...+.++|- ++..++.|..+|+++.|.+|
T Consensus 74 ~GA~la----Gllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g~~~~~~~~v~~-F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 74 FGALLA----GLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMGKEAALFFFVPP-FLISTLIGAIIGYILLKALK 148 (150)
T ss_pred HHHHHH----HHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhCCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 566665 555555555 356666777777887778888776667666777776 77889999999999998876
No 45
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=20.49 E-value=2.3e+02 Score=28.95 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=33.3
Q ss_pred HHHHhhccccchhhHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHhCCCC
Q 013221 55 LMFASLAKTVTLEEIIS---WWFMPV-NVAMTFLIGGILGWIVVKLLRPKP 101 (447)
Q Consensus 55 LiFskla~~lt~~~l~~---~w~iPv-~~ll~~~ig~~lg~lv~k~~r~p~ 101 (447)
++-..+|.++|.|.+.+ ||+.-+ ..+.+..++.+.+|+..|..|.++
T Consensus 33 ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~ 83 (318)
T PF05145_consen 33 ILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDR 83 (318)
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 45677888888776554 443222 234555889999999999998873
Done!