Query 013221
Match_columns 447
No_of_seqs 121 out of 271
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.9 0.0012 4E-08 66.3 7.0 110 328-443 46-156 (332)
2 3zux_A Transporter, ASBTNM; tr 83.7 2.7 9.2E-05 41.7 8.0 45 78-123 233-277 (332)
3 4f4l_A ION transport protein; 17.0 2E+02 0.0068 23.4 5.3 54 113-166 36-91 (112)
4 1zcd_A Na(+)/H(+) antiporter 1 6.9 2.1E+02 0.007 28.9 2.3 94 36-131 248-352 (388)
5 1q90_G Cytochrome B6F complex 5.0 2.7E+02 0.0091 18.8 1.2 11 270-280 6-16 (37)
6 2knc_A Integrin alpha-IIB; tra 4.7 8.8E+02 0.03 17.5 4.0 36 346-385 5-40 (54)
7 2nwl_A GLTPH, glutamate sympor 4.4 1.1E+03 0.037 23.6 6.0 54 49-102 55-112 (422)
8 1wrg_A LH-1, light-harvesting 4.3 9E+02 0.031 17.5 3.8 37 63-99 10-46 (55)
9 1q90_M Cytochrome B6F complex 3.7 1.1E+03 0.036 16.0 4.4 24 75-98 9-32 (39)
10 1vf5_F Protein PET M; photosyn 3.6 1E+03 0.035 15.7 4.2 23 76-98 9-31 (35)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.93 E-value=0.0012 Score=66.27 Aligned_cols=110 Identities=13% Similarity=0.032 Sum_probs=86.8
Q ss_pred Cccchhhhhhhcccccc-ccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhhhHHHhhccCCchhHHH
Q 013221 328 DGTIPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 406 (447)
Q Consensus 328 ~a~IP~~llvLGa~L~~-g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~~Dpl~~FVl~l~~~~PpA~~l 406 (447)
...+.++++..|.++.. ..+...-++|......+.+++++|+++..+.+.. +.||.+...+++..+.|++.+-
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~------~l~~~~~~Glil~~~~P~~~~s 119 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL------NLPAEIAVGVILVGCCPGGTAS 119 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHSCCCTHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHhcCCchhHH
Confidence 45677889999999963 2222223467778889999999999999887643 5699999999999999999998
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013221 407 GTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 443 (447)
Q Consensus 407 ~~itql~~~~e~e~s~il~w~Y~v~~vslt~~~~~fl 443 (447)
..+|++.+-..+-....-..+-+++.+.+|+|..+|+
T Consensus 120 ~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 120 NVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8899988755544555556888999999999988775
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=83.65 E-value=2.7 Score=41.70 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHH
Q 013221 78 NVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123 (447)
Q Consensus 78 ~~ll~~~ig~~lg~lv~k~~r~p~~~~~~vi~~~~fgN~~~LPl~l 123 (447)
..++.+.+|+.+||.+.|.+|.+++.+.-+.-.|+..|+ .+-+.+
T Consensus 233 ~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~l 277 (332)
T 3zux_A 233 VVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAAL 277 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHH
Confidence 356777999999999999999999888777777888998 344443
No 3
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=16.97 E-value=2e+02 Score=23.41 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=30.1
Q ss_pred cCCcchhHHHHHHHHhhcCCC--CCCCchhhhhhhHHHHHHHHHhhhHhhhhcccc
Q 013221 113 SGNLGNLLLIIVPAICHEQGS--PFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (447)
Q Consensus 113 fgN~~~LPl~lv~sl~~~~~~--pf~~~~~~~~~G~aY~~~~~~vg~i~~ws~~~~ 166 (447)
|+|.++=-+.+.+-++.|+=. -..+.......+..|...+..+++.+.-..-..
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfia 91 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIG 91 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666766654311 111111122345678888888888877766443
No 4
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=6.89 E-value=2.1e+02 Score=28.93 Aligned_cols=94 Identities=13% Similarity=0.265 Sum_probs=60.0
Q ss_pred CHHHHhhhccchhhhhhhHHHHHhhccccchh---hHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHh--CCCCCCC-
Q 013221 36 TADARRSLNKMVFTVFTPSLMFASLAKTVTLE---EIISWWFMPVNVAMTF----LIG-GILGWIVVKLL--RPKPHLE- 104 (447)
Q Consensus 36 ~~~~~k~lS~lv~~vFlP~LiFskla~~lt~~---~l~~~w~iPv~~ll~~----~ig-~~lg~lv~k~~--r~p~~~~- 104 (447)
.++..+.+...+..+++|-.-|.|.|=+++.+ .+.+- .+..+.+.. .+| +..+|+..|.. |.|+..+
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~--~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~ 325 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSI--LPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTY 325 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHH--SSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCH
Confidence 46678888999999999999999999999774 44332 222122222 233 22245665554 6676543
Q ss_pred CeeEEEeecCCcchhHHHHHHHHhhcC
Q 013221 105 GLVIATCASGNLGNLLLIIVPAICHEQ 131 (447)
Q Consensus 105 ~~vi~~~~fgN~~~LPl~lv~sl~~~~ 131 (447)
+-..+.+.-.|++-..=.++..+.-++
T Consensus 326 ~~~~~vg~L~gigftmsL~Ia~laf~~ 352 (388)
T 1zcd_A 326 QQIMVVGILCGIGFTMSIFIASLAFGS 352 (388)
T ss_dssp GGGTTHHHHTTCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhccchHHHHHHHHHhccC
Confidence 344666666788877777777887643
No 5
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.01 E-value=2.7e+02 Score=18.78 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=7.4
Q ss_pred HHHHHHhcchH
Q 013221 270 IVGFIFGAVVW 280 (447)
Q Consensus 270 ilgiiig~iPp 280 (447)
+.|++.|+||-
T Consensus 6 L~GIVlGlipv 16 (37)
T 1q90_G 6 LCGIVLGLVPV 16 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHhhHHH
Confidence 56777777773
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=4.67 E-value=8.8e+02 Score=17.48 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=23.3
Q ss_pred cCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 013221 346 LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP 385 (447)
Q Consensus 346 ~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~ 385 (447)
.+...+|++.|+..++.=++++.++... ++|.|+..
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~li~~~----LwK~GFFk 40 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTILVLA----MWKVGFFK 40 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHTT
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHH----HHHcCccc
Confidence 3455688888888888877776655443 44555543
No 7
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=4.42 E-value=1.1e+03 Score=23.61 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=40.7
Q ss_pred hhhhhHHHHHhhccccc---hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 013221 49 TVFTPSLMFASLAKTVT---LEEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (447)
Q Consensus 49 ~vFlP~LiFskla~~lt---~~~l~~~-w~iPv~~ll~~~ig~~lg~lv~k~~r~p~~ 102 (447)
....|=|+|..+...+. .+++.++ +-.-.++++++.++..+|.++..++++-..
T Consensus 55 kmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 55 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34667788888888874 3566554 345666788889999999999999987643
No 8
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=4.30 E-value=9e+02 Score=17.53 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=29.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013221 63 TVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (447)
Q Consensus 63 ~lt~~~l~~~w~iPv~~ll~~~ig~~lg~lv~k~~r~ 99 (447)
-+|.++-++++-+-+.....|..=.+++.++....|+
T Consensus 10 GLT~~EAqEfH~~f~~~~~~F~~iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 10 GITEGEAKEFHKIFTSSILVFFGVAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3688999999988888777777667777777777664
No 9
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=3.70 E-value=1.1e+03 Score=16.02 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 013221 75 MPVNVAMTFLIGGILGWIVVKLLR 98 (447)
Q Consensus 75 iPv~~ll~~~ig~~lg~lv~k~~r 98 (447)
+.......+++|..+|+++-|+-+
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Confidence 334455667889999999988753
No 10
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=3.62 E-value=1e+03 Score=15.71 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 013221 76 PVNVAMTFLIGGILGWIVVKLLR 98 (447)
Q Consensus 76 Pv~~ll~~~ig~~lg~lv~k~~r 98 (447)
.......+.+|..+|+++-|+-+
T Consensus 9 A~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 9 ALLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhheeec
Confidence 34455667889999999888753
Done!