Query 013221
Match_columns 447
No_of_seqs 121 out of 271
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 06:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013221.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013221hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 25.4 22 0.0016 21.7 2.3 29 259-287 5-33 (34)
2 d1q90r_ f.23.12.1 (R:) ISP sub 5.4 1.9E+02 0.014 18.1 2.3 29 259-287 10-38 (39)
3 d1q90g_ f.23.26.1 (G:) PetG su 4.6 1.5E+02 0.011 17.4 1.2 12 269-280 5-16 (30)
4 d1jo5a_ f.3.1.1 (A:) Light-har 3.6 5.1E+02 0.037 16.7 3.6 38 62-99 9-46 (48)
5 d1lghb_ f.3.1.1 (B:) Light-har 3.6 5.4E+02 0.039 16.2 5.6 38 62-99 4-41 (43)
6 d1tm9a_ a.225.1.1 (A:) Hypothe 2.9 4.3E+02 0.031 19.9 3.0 19 368-386 94-112 (137)
7 d1tbaa_ a.15.1.1 (A:) TAF(II)2 2.7 1.8E+02 0.013 20.1 0.5 14 34-47 37-50 (67)
8 d2cxaa1 d.108.1.6 (A:1-232) Le 2.7 1.3E+02 0.0095 26.1 -0.4 35 331-393 22-60 (232)
9 d1q90m_ f.23.25.1 (M:) PetM su 2.4 5.9E+02 0.043 14.9 2.5 15 82-96 15-29 (34)
10 d1jb0m_ f.23.19.1 (M:) Subunit 2.2 4.4E+02 0.032 15.3 1.7 15 269-283 8-22 (31)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.35 E-value=22 Score=21.70 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.3
Q ss_pred HhhcChhHHHHHHHHHHhcchHHHHhhcC
Q 013221 259 EELLAPPTLAAIVGFIFGAVVWLRNLIIG 287 (447)
Q Consensus 259 ~~~~~Pp~iaailgiiig~iPpLk~lf~~ 287 (447)
++|||=-+.+.+-|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 56788889999999999999999888864
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.35 E-value=1.9e+02 Score=18.13 Aligned_cols=29 Identities=3% Similarity=-0.129 Sum_probs=21.2
Q ss_pred HhhcChhHHHHHHHHHHhcchHHHHhhcC
Q 013221 259 EELLAPPTLAAIVGFIFGAVVWLRNLIIG 287 (447)
Q Consensus 259 ~~~~~Pp~iaailgiiig~iPpLk~lf~~ 287 (447)
+++||=-+.|++-+-..|+.-|.-+.|+.
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFvP 38 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFVP 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccchhhhhhccceeEEecC
Confidence 35566668888888888887777777664
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.59 E-value=1.5e+02 Score=17.43 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=8.4
Q ss_pred HHHHHHHhcchH
Q 013221 269 AIVGFIFGAVVW 280 (447)
Q Consensus 269 ailgiiig~iPp 280 (447)
.+.|++.|+||-
T Consensus 5 ll~GivlGlipi 16 (30)
T d1q90g_ 5 LLCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHhhHHH
Confidence 356777888874
No 4
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.62 E-value=5.1e+02 Score=16.71 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=28.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013221 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (447)
Q Consensus 62 ~~lt~~~l~~~w~iPv~~ll~~~ig~~lg~lv~k~~r~ 99 (447)
+-+|.++.+++-=+-+.....|..-.+++.+++.+.||
T Consensus 9 tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp GGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34677888887766666677777777888888888775
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.57 E-value=5.4e+02 Score=16.18 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=29.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013221 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (447)
Q Consensus 62 ~~lt~~~l~~~w~iPv~~ll~~~ig~~lg~lv~k~~r~ 99 (447)
+.+|.++.++.-=+-+.....|..-.+++.+++.+.||
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35788888888777777777887778888888888775
No 6
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=2.91 E-value=4.3e+02 Score=19.86 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHhCCCCC
Q 013221 368 PFIGVWVVKAAAALGFLPS 386 (447)
Q Consensus 368 Piigv~iv~~~~~~g~~~~ 386 (447)
|.|...+.+.++++|++.|
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 4555566788899999884
No 7
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.69 E-value=1.8e+02 Score=20.15 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=12.9
Q ss_pred CCCHHHHhhhccch
Q 013221 34 LLTADARRSLNKMV 47 (447)
Q Consensus 34 iL~~~~~k~lS~lv 47 (447)
+||++.+|+|+.+.
T Consensus 37 ~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 37 GFDAELRENIGSLS 50 (67)
T ss_dssp SCCTTTHHHHTTCT
T ss_pred ccCHHHHHHHHHHh
Confidence 89999999999886
No 8
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Probab=2.67 E-value=1.3e+02 Score=26.10 Aligned_cols=35 Identities=34% Similarity=0.541 Sum_probs=25.1
Q ss_pred chhhhhhhccccccccCcCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHhCCCC----CChhhhHH
Q 013221 331 IPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP----SDPLYHYV 393 (447)
Q Consensus 331 IP~~llvLGa~L~~g~~~~~l~~~~iv~iv~~RliilPiigv~iv~~~~~~g~~~----~Dpl~~FV 393 (447)
=|=+++.+|+.|.. -|+ ..+++.|+.| +||++|+.
T Consensus 22 ~~~Glla~ggdLsp-----------------~~L-----------l~AY~~GiFPw~~~~~~i~Wws 60 (232)
T d2cxaa1 22 EPNGLLALGGDLSP-----------------ARL-----------LMAYQRGIFPWFSPGDPILWWS 60 (232)
T ss_dssp TTTTEEEECCCCCH-----------------HHH-----------HHHHHHTCEECCCTTSCCEEEC
T ss_pred CCCCeEEECCCCCH-----------------HHH-----------HHHHHcCCccCCcCCCCeEEEe
Confidence 36688888998875 233 2678889866 68988874
No 9
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.39 E-value=5.9e+02 Score=14.85 Aligned_cols=15 Identities=20% Similarity=0.665 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 013221 82 TFLIGGILGWIVVKL 96 (447)
Q Consensus 82 ~~~ig~~lg~lv~k~ 96 (447)
.+++|..+|+++-|+
T Consensus 15 ~tl~glaigfvllrv 29 (34)
T d1q90m_ 15 MTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhheee
Confidence 456788888877664
No 10
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=2.25 E-value=4.4e+02 Score=15.28 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=9.4
Q ss_pred HHHHHHHhcchHHHH
Q 013221 269 AIVGFIFGAVVWLRN 283 (447)
Q Consensus 269 ailgiiig~iPpLk~ 283 (447)
..++++|+++|-+-+
T Consensus 8 v~valvial~pg~la 22 (31)
T d1jb0m_ 8 VYVALVIALLPAVLA 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356677777776543
Done!