Query 013222
Match_columns 447
No_of_seqs 330 out of 1211
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1E-35 3.4E-40 242.3 4.8 76 258-333 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.7E-35 5.7E-40 242.0 3.6 75 258-332 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 5.2E-30 1.8E-34 208.7 4.4 66 97-162 9-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 6.1E-30 2.1E-34 209.2 4.0 66 97-162 12-78 (78)
5 2rpr_A Flywch-type zinc finger 75.8 1.5 5E-05 35.2 2.5 52 268-332 21-75 (87)
6 2rpr_A Flywch-type zinc finger 57.6 3.6 0.00012 32.9 1.3 50 100-161 22-74 (87)
7 1cz6_A Protein (androctonin); 17.0 34 0.0012 22.3 0.4 8 293-300 16-23 (26)
8 1odh_A MGCM1; transcription fa 11.5 1.3E+02 0.0044 27.8 2.7 12 153-164 149-160 (174)
9 1odh_A MGCM1; transcription fa 8.0 2E+02 0.007 26.5 2.6 39 294-335 122-161 (174)
10 1qxn_A SUD, sulfide dehydrogen 7.9 1.3E+02 0.0043 25.1 1.1 24 267-290 109-133 (137)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-35 Score=242.26 Aligned_cols=76 Identities=67% Similarity=1.280 Sum_probs=73.3
Q ss_pred ceeeeeccCCcccCCCCchhhhcCccccCCCCCCCccccccCCCCCcchhhhhhcCCCCeEEEEEecccCCCCCCC
Q 013222 258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 333 (447)
Q Consensus 258 ~rvvv~t~Se~d~~dDGY~WRKYGQK~IkGn~~PRsYYrCt~~gC~arK~Vqr~~~D~~~~itTY~G~HnH~~p~~ 333 (447)
.||+|+|.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+++|||+|+|||+.|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999853
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.7e-35 Score=241.97 Aligned_cols=75 Identities=79% Similarity=1.297 Sum_probs=69.8
Q ss_pred ceeeeeccCCcccCCCCchhhhcCccccCCCCCCCccccccCCCCCcchhhhhhcCCCCeEEEEEecccCCCCCC
Q 013222 258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA 332 (447)
Q Consensus 258 ~rvvv~t~Se~d~~dDGY~WRKYGQK~IkGn~~PRsYYrCt~~gC~arK~Vqr~~~D~~~~itTY~G~HnH~~p~ 332 (447)
.+|+|+|.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=5.2e-30 Score=208.68 Aligned_cols=66 Identities=52% Similarity=0.980 Sum_probs=61.5
Q ss_pred eccccCCCCccccccCcccCCCCCCCCCcccCCCCCCcccccccccc-CCceeeeeeeCCCCCCCCC
Q 013222 97 REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 162 (447)
Q Consensus 97 ~~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~ 162 (447)
.+..+++|||+|||||||.|||+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 45678899999999999999999999999999999999999999986 6788999999999999885
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=6.1e-30 Score=209.17 Aligned_cols=66 Identities=52% Similarity=0.965 Sum_probs=60.9
Q ss_pred eccccCCCCccccccCcccCCCCCCCCCcccCCCCCCcccccccccc-CCceeeeeeeCCCCCCCCC
Q 013222 97 REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 162 (447)
Q Consensus 97 ~~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~ 162 (447)
.+..+++|||+|||||||.|||+++||+||||++++|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus 12 s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 12 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 34677899999999999999999999999999999999999999975 6788999999999999873
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=75.75 E-value=1.5 Score=35.21 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=33.4
Q ss_pred cccCCCCchhhhcCccccCCCCCCCccccccC---CCCCcchhhhhhcCCCCeEEEEEecccCCCCCC
Q 013222 268 IDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT---TGCPVRKHVERASHDMRAVITTYEGKHNHDVPA 332 (447)
Q Consensus 268 ~d~~dDGY~WRKYGQK~IkGn~~PRsYYrCt~---~gC~arK~Vqr~~~D~~~~itTY~G~HnH~~p~ 332 (447)
.-|+-|||.-.+--+ ...+.|.+|+. .+|.|+-.... + .+ ...+.|||++..
T Consensus 21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~--~~--~~~~~HnH~p~~ 75 (87)
T 2rpr_A 21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H--RI--MVMRSHCHQPDL 75 (87)
T ss_dssp EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T--EE--EECSCCSSCCCH
T ss_pred cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C--CE--ECCCCcCCCCch
Confidence 345669998775321 12368999984 58999854432 1 13 356899997653
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=57.55 E-value=3.6 Score=32.89 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=31.8
Q ss_pred ccCCCCccccccCcccCCCCCCCCCcccCCC---CCCccccccccccCCceeeeeeeCCCCCCCC
Q 013222 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTF---PDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161 (447)
Q Consensus 100 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~---~~C~akK~Vqr~~dg~~~~i~Y~G~HnH~~p 161 (447)
.+.-|||...+--+ ...+.|.+|+. .+|.|+-.... ++ ++..+.|||++.
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 45678887765321 12368999986 47999744432 22 445789999753
No 7
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=17.04 E-value=34 Score=22.27 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred ccccccCC
Q 013222 293 SYYKCTTT 300 (447)
Q Consensus 293 sYYrCt~~ 300 (447)
.||+||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999964
No 8
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=11.50 E-value=1.3e+02 Score=27.79 Aligned_cols=12 Identities=50% Similarity=1.210 Sum_probs=10.4
Q ss_pred eCCCCCCCCCCc
Q 013222 153 KGSHNHPKPTST 164 (447)
Q Consensus 153 ~G~HnH~~p~~~ 164 (447)
+|.|.||+|...
T Consensus 149 KG~HDHpRPe~k 160 (174)
T 1odh_A 149 KGEHDHPRPETK 160 (174)
T ss_dssp ECCCCSCCCCCH
T ss_pred ccccCCCCCCCc
Confidence 699999999873
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=7.95 E-value=2e+02 Score=26.49 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=24.8
Q ss_pred ccccc-CCCCCcchhhhhhcCCCCeEEEEEecccCCCCCCCCC
Q 013222 294 YYKCT-TTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARG 335 (447)
Q Consensus 294 YYrCt-~~gC~arK~Vqr~~~D~~~~itTY~G~HnH~~p~~r~ 335 (447)
-+.|. +-|=||. ++-|. |...+...-+|.|+|+.|.+..
T Consensus 122 ~~~Crgh~GyPVT-hFWrh--~~~~ifFqaKG~HDHpRPe~k~ 161 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWRH--DGRFIFFQSKGEHDHPRPETKL 161 (174)
T ss_dssp EECCCTBTTBCCE-EEEEE--CSSBEEEEEECCCCSCCCCCHH
T ss_pred eEeccCcCCCcce-EEEEE--cCCEEEEecccccCCCCCCCcc
Confidence 44554 3455664 35553 4445546778999999997654
No 10
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=7.92 E-value=1.3e+02 Score=25.13 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=19.4
Q ss_pred CcccCCCCch-hhhcCccccCCCCC
Q 013222 267 DIDILDDGYR-WRKYGQKVVKGNPN 290 (447)
Q Consensus 267 e~d~~dDGY~-WRKYGQK~IkGn~~ 290 (447)
++.+++.|+. |++.|-.+++++++
T Consensus 109 ~v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 109 TIYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp CEEEESSCHHHHHHTTCCEECCCCC
T ss_pred ceEEEcCcHHHHHHCCCCccccccc
Confidence 3446788986 99999999998875
Done!