BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013224
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/390 (47%), Positives = 248/390 (63%), Gaps = 9/390 (2%)
Query: 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
+G P FEP TE L + ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 390 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 449
Query: 79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
NLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLD
Sbjct: 450 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 509
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
SI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+
Sbjct: 510 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 568
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
L+PPQV FP+CT+A PR HCIEY +++W + G D DDPEH+QW++ +++
Sbjct: 569 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 628
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYN 315
+RA + I GVTY LTQGVVK CA E KIA+ L+NYL +N
Sbjct: 629 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFN 688
Query: 316 GVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TY 372
V GL+ E + ++C C I+ S L++ ++ L LQ+ ++ T
Sbjct: 689 DVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL 748
Query: 373 RGKN--LYMQAPPVLEEMTRSNLSLPLYDL 400
GKN LY+Q+ +EE TR NLS L +L
Sbjct: 749 EGKNRTLYLQSVTSIEERTRPNLSKTLKEL 778
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/390 (47%), Positives = 248/390 (63%), Gaps = 9/390 (2%)
Query: 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
+G P FEP TE L + ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 29 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 88
Query: 79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
NLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLD
Sbjct: 89 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 148
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
SI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+
Sbjct: 149 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 207
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
L+PPQV FP+CT+A PR HCIEY +++W + G D DDPEH+QW++ +++
Sbjct: 208 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 267
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYN 315
+RA + I GVTY LTQGVVK CA E KIA+ L+NYL +N
Sbjct: 268 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFN 327
Query: 316 GVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TY 372
V GL+ E + ++C C I+ S L++ ++ L LQ+ ++ T
Sbjct: 328 DVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL 387
Query: 373 RGKN--LYMQAPPVLEEMTRSNLSLPLYDL 400
GKN LY+Q+ +EE TR NLS L +L
Sbjct: 388 EGKNRTLYLQSVTSIEERTRPNLSKTLKEL 417
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/390 (47%), Positives = 248/390 (63%), Gaps = 9/390 (2%)
Query: 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
+G P FEP TE L + ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 19 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 78
Query: 79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
NLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLD
Sbjct: 79 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 138
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
SI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+
Sbjct: 139 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 197
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
L+PPQV FP+CT+A PR HCIEY +++W + G D DDPEH+QW++ +++
Sbjct: 198 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 257
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYN 315
+RA + I GVTY LTQGVVK CA E KIA+ L+NYL +N
Sbjct: 258 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFN 317
Query: 316 GVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TY 372
V GL+ E + ++C C I+ S L++ ++ L LQ+ ++ T
Sbjct: 318 DVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL 377
Query: 373 RGKN--LYMQAPPVLEEMTRSNLSLPLYDL 400
GKN LY+Q+ +EE TR NLS L +L
Sbjct: 378 EGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/390 (47%), Positives = 248/390 (63%), Gaps = 9/390 (2%)
Query: 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
+G P FEP TE L + ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 107
Query: 79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
NLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLD
Sbjct: 108 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 167
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
SI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+
Sbjct: 168 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 226
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
L+PPQV FP+CT+A PR HCIEY +++W + G D DDPEH+QW++ +++
Sbjct: 227 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 286
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYN 315
+RA + I GVTY LTQGVVK CA E KIA+ L+NYL +N
Sbjct: 287 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFN 346
Query: 316 GVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TY 372
V GL+ E + ++C C I+ S L++ ++ L LQ+ ++ T
Sbjct: 347 DVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL 406
Query: 373 RGKN--LYMQAPPVLEEMTRSNLSLPLYDL 400
GKN LY+Q+ +EE TR NLS L +L
Sbjct: 407 EGKNRTLYLQSVTSIEERTRPNLSKTLKEL 436
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 183/390 (46%), Positives = 247/390 (63%), Gaps = 9/390 (2%)
Query: 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
+G P FEP TE L + ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 19 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 78
Query: 79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
NLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLD
Sbjct: 79 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 138
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
SI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+
Sbjct: 139 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 197
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
L+PPQV FP+ T+A PR HCIEY +++W + G D DDPEH+QW++ +++
Sbjct: 198 LYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 257
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYN 315
+RA + I GVTY LTQGVVK CA E KIA+ L+NYL +N
Sbjct: 258 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFN 317
Query: 316 GVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TY 372
V GL+ E + ++C C I+ S L++ ++ L LQ+ ++ T
Sbjct: 318 DVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL 377
Query: 373 RGKN--LYMQAPPVLEEMTRSNLSLPLYDL 400
GKN LY+Q+ +EE TR NLS L +L
Sbjct: 378 EGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 183/390 (46%), Positives = 247/390 (63%), Gaps = 9/390 (2%)
Query: 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
+G P FEP TE L + ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 16 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 75
Query: 79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
NLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLD
Sbjct: 76 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 135
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
SI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+
Sbjct: 136 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 194
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
L+PPQV FP+ T+A PR HCIEY +++W + G D DDPEH+QW++ +++
Sbjct: 195 LYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 254
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYN 315
+RA + I GVTY LTQGVVK CA E KIA+ L+NYL +N
Sbjct: 255 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFN 314
Query: 316 GVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TY 372
V GL+ E + ++C C I+ S L++ ++ L LQ+ ++ T
Sbjct: 315 DVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL 374
Query: 373 RGKN--LYMQAPPVLEEMTRSNLSLPLYDL 400
GKN LY+Q+ +EE TR NLS L +L
Sbjct: 375 EGKNRTLYLQSVTSIEERTRPNLSKTLKEL 404
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 352 bits (902), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 247/390 (63%), Gaps = 9/390 (2%)
Query: 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
+G P FEP TE L + ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 19 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 78
Query: 79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
NLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLD
Sbjct: 79 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 138
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
SI AR +IN + S L YE D +I P++DGGTEGFKG+A+VI+PG+T C ECT+
Sbjct: 139 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLE 197
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
L+PPQV FP+ T+A PR HCIEY +++W + G D DDPEH+QW++ +++
Sbjct: 198 LYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 257
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYN 315
+RA + I GVTY LTQGVVK CA E KIA+ L+NYL +N
Sbjct: 258 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFN 317
Query: 316 GVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TY 372
V GL+ E + ++C C I+ S L++ ++ L LQ+ ++ T
Sbjct: 318 DVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL 377
Query: 373 RGKN--LYMQAPPVLEEMTRSNLSLPLYDL 400
GKN LY+Q+ +EE TR NLS L +L
Sbjct: 378 EGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 350 bits (899), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 246/390 (63%), Gaps = 9/390 (2%)
Query: 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
+G P FEP TE L + ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 19 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 78
Query: 79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
NLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLD
Sbjct: 79 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 138
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
SI AR +IN + S L YE D +I P++DGGTEGFKG+A VI+PG+T C ECT+
Sbjct: 139 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLE 197
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
L+PPQV FP+ T+A PR HCIEY +++W + G D DDPEH+QW++ +++
Sbjct: 198 LYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 257
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYN 315
+RA + I GVTY LTQGVVK CA E KIA+ L+NYL +N
Sbjct: 258 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFN 317
Query: 316 GVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TY 372
V GL+ E + ++C C I+ S L++ ++ L LQ+ ++ T
Sbjct: 318 DVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL 377
Query: 373 RGKN--LYMQAPPVLEEMTRSNLSLPLYDL 400
GKN LY+Q+ +EE TR NLS L +L
Sbjct: 378 EGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 128/224 (57%), Gaps = 23/224 (10%)
Query: 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK 101
R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA +
Sbjct: 39 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKE 98
Query: 102 RVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
V++ NIV + I D ++ F+ F +++ LD+ AR+++N + +
Sbjct: 99 SVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLA------- 151
Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAA 219
P+++ GT G+ G I GVT C+EC P Q FP CT+ TP
Sbjct: 152 ------ADVPLIESGTAGYLGQVTTIKKGVTECYECHP--KPTQRTFPGCTIRNTPSEPI 203
Query: 220 HCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 258
HCI +A + + E + + PD DPE W +EA RA
Sbjct: 204 HCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 246
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 23/225 (10%)
Query: 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA
Sbjct: 20 GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAK 79
Query: 101 KRVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYET 158
+ V++ NIV + I D ++ F+ F +++ LD+ AR+++N + +
Sbjct: 80 ESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLA------ 133
Query: 159 DDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTA 218
P+++ GT G+ G I GVT C+EC P Q FP CT+ TP
Sbjct: 134 -------ADVPLIESGTAGYLGQVTTIKKGVTECYECHP--KPTQRTFPGCTIRNTPSEP 184
Query: 219 AHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 258
HCI +A + + E + + PD DPE W +EA RA
Sbjct: 185 IHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 228
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 127/224 (56%), Gaps = 23/224 (10%)
Query: 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK 101
R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA +
Sbjct: 19 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKE 78
Query: 102 RVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
V++ NIV + I D ++ F+ F +++ LD+ AR+++N + +
Sbjct: 79 SVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLA------- 131
Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAA 219
P+++ GT G+ G I GVT C+EC P Q FP T+ TP
Sbjct: 132 ------ADVPLIESGTAGYLGQVTTIKKGVTECYECHP--KPTQRTFPGATIRNTPSEPI 183
Query: 220 HCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 258
HCI +A + + E + + PD DPE W +EA RA
Sbjct: 184 HCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 226
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 111/209 (53%), Gaps = 28/209 (13%)
Query: 30 GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQF 84
G+E ++ + + LV GAG +GCE+LK+ A+ G ++ V DMD IE SNLNRQF
Sbjct: 407 GSEFQEKIASLSTFLV-GAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQF 465
Query: 85 LFRMEDVGKPKAEVA--AKRVMERVSGVNIVPHFCRI--EDKDI---SFYNDFNIIVLGL 137
LFR DVGK K+E A A +M I + R+ E + I F+ +++ L
Sbjct: 466 LFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNAL 525
Query: 138 DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTI 197
D++EAR Y++ C F E KP+++ GT G KG+ +V++P +T + +
Sbjct: 526 DNVEARMYVDR-RCVFFE------------KPLLESGTLGTKGNTQVVVPHLTESYGSS- 571
Query: 198 WLFPPQVKFPLCTLAETPRTAAHCIEYAH 226
PP+ FP+CTL P H I +A
Sbjct: 572 -QDPPEKSFPICTLKNFPNRIEHTIAWAR 599
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
+ +L++G GLG E+ K++ L+G K++ + D + +L+ Q+ +D+G P+A+V
Sbjct: 27 SNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLTEDDIGVPRAKVTV 86
Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYIN 147
++ E +N +++ + +F +V+ S+ + IN
Sbjct: 87 SKLAE----LNQYVPVSVVDELSTEYLKNFKCVVVTETSLTKQLEIN 129
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 27/197 (13%)
Query: 41 ARILVVGAGGLGCELLKDLALSGFKN-----LEVIDMDRIEVSNLNRQFLFRMEDVGKPK 95
+++ +VG+G +GCE+LK+ AL G + + V D D IE SNLNRQFLFR +DVGK K
Sbjct: 426 SKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNK 485
Query: 96 AEVAAKRVM----ERVSGVNIVPHFCRIEDKDI---SFYNDFNIIVLGLDSIEARSYINA 148
+EVAA+ V + +N E ++I SF+ + + LD+++AR+Y++
Sbjct: 486 SEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDR 545
Query: 149 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 208
C F KP+++ GT G KG+ +VIIP +T + + PP+ PL
Sbjct: 546 -RCVFYR------------KPLLESGTLGTKGNTQVIIPRLTESYSSS--RDPPEKSIPL 590
Query: 209 CTLAETPRTAAHCIEYA 225
CTL P H I +A
Sbjct: 591 CTLRSFPNKIDHTIAWA 607
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 44/67 (65%)
Query: 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
+ + +L++G GLG E+ K++ L+G K++ V D + +++++L+ QF +D+G+ + +V
Sbjct: 26 QTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDV 85
Query: 99 AAKRVME 105
++ E
Sbjct: 86 TRAKLAE 92
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Query: 22 LVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLN 81
L G F+ L+D +R+L+VG GGLGC + LA +G NL ++D D + +SNL
Sbjct: 18 LRGFDFDGQEALKD-----SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQ 72
Query: 82 RQFLFRMEDVGKPKAEVAAKRVMERVS-GVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDS 139
RQ L VG+PK E +A+ + R++ + I P ++D ++ + + ++++ D+
Sbjct: 73 RQTLHSDATVGQPKVE-SARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDN 131
Query: 140 IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII-PGVTPCFECTIW 198
+ R+ +NA C + P+V G +G V PC+ C
Sbjct: 132 VAVRNQLNA-GCFAAKV------------PLVSGAAIRMEGQITVFTYQDGEPCYRCLSR 178
Query: 199 LF 200
LF
Sbjct: 179 LF 180
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 33 LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG 92
++D L+ A+++++G GG+G + LA SG + +ID D+IE +NL RQ LF +DVG
Sbjct: 112 VQDKLKN-AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVG 170
Query: 93 KPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACS 152
K K EV + +++R S +++ I D Y D + + EA ++ +
Sbjct: 171 KNKTEVIKRELLKRNSEISVSEIALNIND-----YTDLHKVP------EADIWVVSADHP 219
Query: 153 FLEYETDDKPREETIKPMVDGG-TEGFKGHARVIIPGVTPCFEC 195
F +K +P ++ G + +PG T C+EC
Sbjct: 220 FNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYEC 263
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 33 LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG 92
++D L+ A+++++G GG+G + LA SG + +ID D+IE +NL RQ LF +DVG
Sbjct: 109 VQDKLKN-AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVG 167
Query: 93 KPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACS 152
K K EV + +++R S +++ I D Y D + + EA ++ +
Sbjct: 168 KNKTEVIKRELLKRNSEISVSEIALNIND-----YTDLHKVP------EADIWVVSADHP 216
Query: 153 FLEYETDDKPREETIKPMVDGG-TEGFKGHARVIIPGVTPCFEC 195
F +K +P ++ G + +PG T C+EC
Sbjct: 217 FNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYEC 260
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 16/160 (10%)
Query: 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
+++L++G GGLG LA +G L + D D + +SNL RQ LF ED+ +PK++V+
Sbjct: 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 88
Query: 101 KRVMERVSGVNIVPHFCRIEDKDIS-FYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
+R+ + + + R+ + + ++++ D++ R INA AC L
Sbjct: 89 QRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINA-ACVALN---- 143
Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGVTP-CFECTIW 198
P++ GF G V+ P C+ C +W
Sbjct: 144 --------TPLITASAVGFGGQLMVLTPPWEQGCYRC-LW 174
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
+++L++G GGLG LA +G L + D D + +SNL RQ LF ED+ +PK++V+
Sbjct: 31 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 90
Query: 101 KRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYE 157
+R+ + + + R+ KD D +++ D++ R INA AC L
Sbjct: 91 QRLTQLNPDIQLTALQQRLTGEALKDAVARAD--VVLDCTDNMATRQEINA-ACVALN-- 145
Query: 158 TDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP-CFECTIW 198
P++ GF G V+ P C+ C +W
Sbjct: 146 ----------TPLITASAVGFGGQLMVLTPPWEQGCYRC-LW 176
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
+R+L+VG GLG E+ K+L L+G K L ++D +++ + QFL R VG+ +AE +
Sbjct: 37 SRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASL 96
Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVL 135
+R V++ IE K SF+ F+ + L
Sbjct: 97 ERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCL 131
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
+L D+ + ++L++GAG LGC + + L G + + +D + SN RQ L+ ED
Sbjct: 26 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 85
Query: 92 GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
GKPKAE+AA KR+ + +GV + +P + + + DF +II L
Sbjct: 86 GKPKAELAAASLKRIFPLXDATGVKLSIPXIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 145
Query: 136 GLDSIEAR 143
+DS E+R
Sbjct: 146 LVDSRESR 153
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
+L D+ + ++L++GAG LGC + + L G + + +D + SN RQ L+ ED
Sbjct: 26 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 85
Query: 92 GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
GKPKAE+AA KR+ + +GV + +P + + + DF +II L
Sbjct: 86 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 145
Query: 136 GLDSIEAR 143
+DS E+R
Sbjct: 146 LVDSRESR 153
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
+L D+ + ++L++GAG LGC + + L G + + +D + SN RQ L+ ED
Sbjct: 318 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDA 377
Query: 92 GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
GKPKAE+AA KR+ + +GV + +P + + + DF +II L
Sbjct: 378 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 437
Query: 136 GLDSIEAR 143
+DS E+R
Sbjct: 438 LVDSRESR 445
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
+L D+ + ++L++GAG LGC + + L G + + +D + SN RQ L+ ED
Sbjct: 30 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 89
Query: 92 GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
GKPKAE+AA KR+ + +GV + +P + + + DF +II L
Sbjct: 90 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 149
Query: 136 GLDSIEAR 143
+DS E+R
Sbjct: 150 LVDSRESR 157
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
+L D+ + ++L++GAG LGC + + L G + + +D + SN RQ L+ ED
Sbjct: 319 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 378
Query: 92 GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
GKPKAE+AA KR+ + +GV + +P + + + DF +II L
Sbjct: 379 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 438
Query: 136 GLDSIEAR 143
+DS E+R
Sbjct: 439 LVDSRESR 446
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
+L D+ + ++L++GAG LGC + + L G + + +D + SN RQ L+ ED
Sbjct: 319 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 378
Query: 92 GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
GKPKAE+AA KR+ + +GV + +P + + + DF +II L
Sbjct: 379 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 438
Query: 136 GLDSIEAR 143
+DS E+R
Sbjct: 439 LVDSRESR 446
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
+L D+ + ++L++GAG LGC + + L G + + +D + SN RQ L+ ED
Sbjct: 318 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 377
Query: 92 GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
GKPKAE+AA KR+ + +GV + +P + + + DF +II L
Sbjct: 378 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 437
Query: 136 GLDSIEAR 143
+DS E+R
Sbjct: 438 LVDSRESR 445
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
E A + ++ A G E+LK+L L G + +ID +++ + F + +GK +AE
Sbjct: 31 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 90
Query: 99 AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
A + + E VSG + + D D SF+ F ++V
Sbjct: 91 AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 129
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
E A + ++ A G E+LK+L L G + +ID +++ + F + +GK +AE
Sbjct: 31 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 90
Query: 99 AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
A + + E VSG + + D D SF+ F ++V
Sbjct: 91 AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 129
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
E A + ++ A G E+LK+L L G + +ID +++ + F + +GK +AE
Sbjct: 29 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 88
Query: 99 AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
A + + E VSG + + D D SF+ F ++V
Sbjct: 89 AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 127
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
E A + ++ A G E+LK+L L G + +ID +++ + F + +GK +AE
Sbjct: 32 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 91
Query: 99 AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
A + + E VSG + + D D SF+ F ++V
Sbjct: 92 AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 130
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
E A + ++ A G E+LK+L L G + +ID +++ + F + +GK +AE
Sbjct: 29 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 88
Query: 99 AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
A + + E VSG + + D D SF+ F ++V
Sbjct: 89 AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 127
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 59 LALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKR-------VMERVSGVN 111
L G L + D D++E++N+NR F F+ G K + A V+ V N
Sbjct: 55 LTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113
Query: 112 IV-----PHFC-RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 165
I HF RI + + ++++ +D+ EAR IN AC+ L
Sbjct: 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTIN-TACNELGQTW------- 165
Query: 166 TIKPMVDGGTE-GFKGHARVIIPGVTPCFECTIWLFPPQV 204
M G +E GH ++IIPG + CF C PP V
Sbjct: 166 ----MESGVSENAVSGHIQLIIPGESACFACA----PPLV 197
>pdb|2LQ7|A Chain A, E2 Binding Surface On Uba3 Beta-Grasp Domain Undergoes A
Conformational Transition
Length = 97
Score = 35.4 bits (80), Expect = 0.059, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 342 IELDTSVTLEKFINLLEEHPKLQLAKASVT--YRGKN--LYMQAPPVLEEMTRSNLSLPL 397
I+ S L++ ++ L LQ+ ++T GKN LY+Q+ +EE TR NLS L
Sbjct: 8 IQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTL 67
Query: 398 YDL 400
+L
Sbjct: 68 KEL 70
>pdb|1Y8X|B Chain B, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
pdb|3FN1|A Chain A, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 98
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 342 IELDTSVTLEKFINLLEEHPKLQLAKASVT--YRGKN--LYMQAPPVLEEMTRSNLSLPL 397
I+ S L++ ++ L LQ ++T GKN LY Q+ +EE TR NLS L
Sbjct: 9 IQFSPSAKLQEVLDYLTNSASLQXKSPAITATLEGKNRTLYXQSVTSIEERTRPNLSKTL 68
Query: 398 YDL 400
+L
Sbjct: 69 KEL 71
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 11/46 (23%)
Query: 35 DDLQEYAR----------ILVVGAGGLGCELLKDLALSGFKNLEVI 70
+DL++YAR +L++GAG +GCE DL+ G++ L+V+
Sbjct: 130 NDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQ-LDVV 174
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 203 QVKFPLCTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKR 257
Q FP CT+ TP HCI +A + + E + + PD DPE W +EA R
Sbjct: 2 QRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEAR 60
Query: 258 A 258
A
Sbjct: 61 A 61
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 42 RILVVGAGGLGCELLKDLALSGFKNLEVID 71
RI+++GAG +G L +L G+ N+ V+D
Sbjct: 6 RIVIIGAGIVGTNLADELVTRGWNNITVLD 35
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase
Mutant Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDM 72
RI+++GAG +G L +L G+ N+ V+D
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQ 33
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75
++V+G G G +DL ++GFK L + DRI
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI 74
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75
++V+G G G +DL ++GFK L + DRI
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI 74
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75
++V+G G G +DL ++GFK L + DRI
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI 74
>pdb|1A4U|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
pdb|1A4U|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
pdb|1B16|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-3-pentanone
pdb|1B16|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-3-pentanone
pdb|1B14|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
Complex With Nad+
pdb|1B14|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
Complex With Nad+
pdb|1B15|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-Acetone
pdb|1B15|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-Acetone
pdb|1B2L|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis:
Ternary Complex With Nad-Cyclohexanone
pdb|1SBY|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
Complexed With Nad+ And 2,2,2-Trifluoroethanol At 1.1 A
Resolution
pdb|1SBY|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
Complexed With Nad+ And 2,2,2-Trifluoroethanol At 1.1 A
Resolution
Length = 254
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVID-------MDRIEVSNLNRQFLFRM 88
DL I V GG+G + ++L KN ++D + ++ N F
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHT 61
Query: 89 EDVGKPKAEVAA--KRVMERVSGVNIVPHFCRIED 121
DV P AE K++ +++ V+I+ + I D
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGILD 96
>pdb|3RJ5|A Chain A, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ5|B Chain B, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|A Chain A, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|B Chain B, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|C Chain C, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|D Chain D, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|E Chain E, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|F Chain F, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
Length = 254
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVID-------MDRIEVSNLNRQFLFRM 88
DL I V GG+G + ++L KN ++D + ++ N F
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHT 61
Query: 89 EDVGKPKAEVAA--KRVMERVSGVNIVPHFCRIED 121
DV P AE K++ +++ V+I+ + I D
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGILD 96
>pdb|1WR2|A Chain A, Crystal Structure Of Ph1788 From Pyrococcus Horikoshii Ot3
Length = 238
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 20 GNLVGPTFEPGTELRDDLQE---YARILVVGAGGLGCELLKDL 59
G LV P +PG E+ + E + ++ G GG+ E+LKD+
Sbjct: 109 GVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDV 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,894,420
Number of Sequences: 62578
Number of extensions: 533992
Number of successful extensions: 1368
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 57
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)