Query 013224
Match_columns 447
No_of_seqs 345 out of 2248
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 01:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2015 NEDD8-activating compl 100.0 4E-98 9E-103 714.3 30.1 415 3-432 4-421 (422)
2 cd01488 Uba3_RUB Ubiquitin act 100.0 3.3E-79 7.3E-84 599.1 27.8 291 42-337 1-291 (291)
3 KOG2013 SMT3/SUMO-activating c 100.0 8.6E-78 1.9E-82 599.3 19.7 370 31-435 4-524 (603)
4 TIGR01408 Ube1 ubiquitin-activ 100.0 1.7E-71 3.6E-76 620.1 29.3 363 18-404 398-972 (1008)
5 cd01490 Ube1_repeat2 Ubiquitin 100.0 1.3E-70 2.9E-75 562.6 28.9 325 42-384 1-428 (435)
6 cd01489 Uba2_SUMO Ubiquitin ac 100.0 3.4E-69 7.3E-74 533.8 23.4 280 42-336 1-312 (312)
7 KOG2012 Ubiquitin activating e 100.0 2.8E-69 6.1E-74 565.0 21.3 374 7-404 383-978 (1013)
8 cd01484 E1-2_like Ubiquitin ac 100.0 2.1E-67 4.5E-72 503.0 23.2 231 42-298 1-234 (234)
9 TIGR02355 moeB molybdopterin s 100.0 7E-49 1.5E-53 378.0 24.9 233 20-336 3-240 (240)
10 PRK07411 hypothetical protein; 100.0 4.7E-49 1E-53 404.2 24.7 237 20-338 17-257 (390)
11 PRK05690 molybdopterin biosynt 100.0 3.3E-48 7.1E-53 374.8 23.9 230 20-333 11-245 (245)
12 PRK05597 molybdopterin biosynt 100.0 3.5E-48 7.5E-53 393.4 24.5 237 19-337 6-246 (355)
13 PRK05600 thiamine biosynthesis 100.0 1.6E-47 3.5E-52 389.6 26.5 256 20-358 20-283 (370)
14 PRK12475 thiamine/molybdopteri 100.0 9.3E-48 2E-52 387.2 24.0 235 20-338 3-245 (338)
15 PRK08223 hypothetical protein; 100.0 1.7E-47 3.7E-52 372.9 23.2 237 20-322 8-260 (287)
16 PRK07878 molybdopterin biosynt 100.0 9.5E-47 2.1E-51 387.8 25.1 234 20-335 21-262 (392)
17 PRK07688 thiamine/molybdopteri 100.0 1.5E-46 3.3E-51 378.6 25.2 235 20-338 3-245 (339)
18 cd00757 ThiF_MoeB_HesA_family 100.0 3.7E-46 8E-51 357.2 24.0 220 21-322 1-224 (228)
19 PRK08762 molybdopterin biosynt 100.0 8.3E-46 1.8E-50 379.4 24.5 237 20-338 114-358 (376)
20 TIGR02356 adenyl_thiF thiazole 100.0 4.5E-46 9.8E-51 350.2 19.9 165 21-199 1-169 (202)
21 PRK08328 hypothetical protein; 100.0 9.6E-46 2.1E-50 354.7 22.5 217 20-322 8-227 (231)
22 KOG2017 Molybdopterin synthase 100.0 1.7E-46 3.6E-51 362.9 13.4 238 19-338 44-286 (427)
23 cd01491 Ube1_repeat1 Ubiquitin 100.0 2.7E-45 5.8E-50 359.2 17.6 272 21-320 1-282 (286)
24 cd01492 Aos1_SUMO Ubiquitin ac 100.0 6.3E-44 1.4E-48 334.1 19.8 191 20-319 2-192 (197)
25 cd01485 E1-1_like Ubiquitin ac 100.0 2.3E-42 4.9E-47 323.9 20.3 187 21-318 1-192 (198)
26 COG0476 ThiF Dinucleotide-util 100.0 3.8E-42 8.1E-47 334.7 20.6 237 20-337 9-253 (254)
27 KOG2014 SMT3/SUMO-activating c 100.0 6.6E-40 1.4E-44 312.8 16.3 284 20-321 12-323 (331)
28 TIGR03603 cyclo_dehy_ocin bact 100.0 1.9E-39 4.1E-44 324.0 20.1 255 20-357 53-316 (318)
29 cd01493 APPBP1_RUB Ubiquitin a 100.0 7.9E-39 1.7E-43 329.7 23.4 162 20-196 1-165 (425)
30 TIGR01408 Ube1 ubiquitin-activ 100.0 4.1E-38 9E-43 352.2 24.3 282 19-321 4-385 (1008)
31 PRK14852 hypothetical protein; 100.0 2.9E-37 6.3E-42 338.3 20.6 244 20-319 313-561 (989)
32 PRK08644 thiamine biosynthesis 100.0 1.8E-36 3.8E-41 286.8 18.3 147 27-188 16-164 (212)
33 PRK14851 hypothetical protein; 100.0 2.1E-36 4.6E-41 327.2 21.3 168 19-201 23-193 (679)
34 TIGR01381 E1_like_apg7 E1-like 100.0 8.2E-35 1.8E-39 306.8 22.7 152 31-197 330-520 (664)
35 PRK07877 hypothetical protein; 100.0 4.7E-34 1E-38 309.6 16.9 164 19-201 87-256 (722)
36 cd01487 E1_ThiF_like E1_ThiF_l 100.0 8.2E-33 1.8E-37 254.2 17.2 142 42-196 1-145 (174)
37 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 4.9E-32 1.1E-36 259.8 18.0 161 39-213 10-194 (244)
38 PF00899 ThiF: ThiF family; I 100.0 5.9E-32 1.3E-36 238.4 14.3 132 40-184 2-134 (135)
39 cd01486 Apg7 Apg7 is an E1-lik 100.0 3.9E-31 8.5E-36 258.1 21.0 130 42-185 1-150 (307)
40 TIGR02354 thiF_fam2 thiamine b 100.0 3.4E-31 7.5E-36 248.4 19.7 152 28-195 10-167 (200)
41 PRK15116 sulfur acceptor prote 100.0 2.2E-31 4.9E-36 258.8 13.0 146 20-179 11-158 (268)
42 cd01483 E1_enzyme_family Super 100.0 2.1E-30 4.6E-35 230.5 14.4 132 42-186 1-133 (143)
43 cd00755 YgdL_like Family of ac 100.0 1.9E-30 4.1E-35 248.0 14.6 138 29-180 1-140 (231)
44 KOG2336 Molybdopterin biosynth 100.0 3.6E-30 7.8E-35 243.2 13.8 241 16-335 56-314 (422)
45 KOG2012 Ubiquitin activating e 100.0 1.4E-29 3E-34 267.0 16.6 151 19-186 17-167 (1013)
46 KOG2016 NEDD8-activating compl 100.0 2.6E-28 5.5E-33 243.0 15.3 159 17-189 5-166 (523)
47 PTZ00245 ubiquitin activating 100.0 1.3E-28 2.8E-33 232.4 12.3 116 20-142 7-122 (287)
48 PRK06153 hypothetical protein; 99.9 2.5E-27 5.4E-32 238.2 15.0 146 31-198 168-317 (393)
49 COG1179 Dinucleotide-utilizing 99.9 9.5E-28 2.1E-32 224.5 10.3 144 20-177 11-156 (263)
50 KOG2018 Predicted dinucleotide 99.8 1.3E-20 2.9E-25 181.0 14.0 133 28-174 63-197 (430)
51 TIGR03693 ocin_ThiF_like putat 99.8 7.1E-20 1.5E-24 192.2 14.3 209 30-338 120-336 (637)
52 PF08825 E2_bind: E2 binding d 99.7 4.1E-18 8.9E-23 136.9 6.0 84 342-433 1-84 (84)
53 KOG2337 Ubiquitin activating E 99.7 5.8E-17 1.3E-21 164.7 12.8 134 33-181 334-488 (669)
54 PF02134 UBACT: Repeat in ubiq 99.6 1.3E-16 2.8E-21 123.3 5.3 67 238-304 1-67 (67)
55 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.2 3E-11 6.4E-16 97.8 6.5 56 282-338 26-82 (84)
56 PF10585 UBA_e1_thiolCys: Ubiq 99.1 1E-11 2.2E-16 87.9 0.9 43 188-233 1-43 (45)
57 PF14732 UAE_UbL: Ubiquitin/SU 98.9 2.9E-09 6.3E-14 86.6 7.5 82 342-436 2-85 (87)
58 PF09358 UBA_e1_C: Ubiquitin-a 98.6 9.5E-08 2.1E-12 83.0 6.6 81 339-434 34-114 (125)
59 TIGR03882 cyclo_dehyd_2 bacter 98.3 5.3E-07 1.1E-11 84.4 4.6 96 30-196 96-193 (193)
60 COG4015 Predicted dinucleotide 98.3 3.6E-06 7.8E-11 74.9 8.7 122 40-178 18-146 (217)
61 PRK12549 shikimate 5-dehydroge 97.9 3.7E-05 8.1E-10 76.2 9.2 77 37-138 125-201 (284)
62 COG1748 LYS9 Saccharopine dehy 97.9 4.3E-05 9.2E-10 78.4 9.6 99 41-177 2-102 (389)
63 PF01488 Shikimate_DH: Shikima 97.8 6.1E-05 1.3E-09 66.3 7.8 78 36-140 9-86 (135)
64 PRK06718 precorrin-2 dehydroge 97.4 0.0015 3.3E-08 61.5 11.4 84 37-150 8-91 (202)
65 PRK12548 shikimate 5-dehydroge 97.3 0.00081 1.7E-08 66.9 8.4 83 37-138 124-208 (289)
66 PRK14027 quinate/shikimate deh 97.1 0.0016 3.5E-08 64.6 8.1 79 37-138 125-203 (283)
67 PF13241 NAD_binding_7: Putati 97.1 0.0014 3.1E-08 54.8 6.4 78 37-151 5-82 (103)
68 TIGR01470 cysG_Nterm siroheme 97.0 0.01 2.2E-07 56.1 12.0 85 37-151 7-91 (205)
69 TIGR01809 Shik-DH-AROM shikima 96.9 0.0023 5E-08 63.4 7.5 77 37-138 123-199 (282)
70 PRK12749 quinate/shikimate deh 96.9 0.0035 7.5E-08 62.4 8.5 82 37-138 122-205 (288)
71 PRK06719 precorrin-2 dehydroge 96.9 0.0064 1.4E-07 55.0 9.3 81 37-150 11-91 (157)
72 PF03435 Saccharop_dh: Sacchar 96.8 0.003 6.5E-08 65.2 7.2 94 43-173 1-97 (386)
73 PRK00258 aroE shikimate 5-dehy 96.8 0.0047 1E-07 61.0 8.0 74 37-138 121-194 (278)
74 COG0373 HemA Glutamyl-tRNA red 96.6 0.0036 7.7E-08 64.9 6.1 75 37-141 176-250 (414)
75 PRK13940 glutamyl-tRNA reducta 96.6 0.0044 9.5E-08 64.7 6.6 75 37-140 179-253 (414)
76 COG0169 AroE Shikimate 5-dehyd 96.5 0.0089 1.9E-07 59.2 8.1 74 40-138 126-199 (283)
77 PRK04148 hypothetical protein; 96.4 0.031 6.6E-07 49.2 9.6 83 40-151 17-99 (134)
78 PRK05562 precorrin-2 dehydroge 96.3 0.027 5.8E-07 53.9 9.6 85 37-151 23-107 (223)
79 cd01078 NAD_bind_H4MPT_DH NADP 96.3 0.017 3.6E-07 53.8 8.1 81 37-139 26-107 (194)
80 cd01065 NAD_bind_Shikimate_DH 96.1 0.024 5.2E-07 50.3 7.6 36 37-73 17-52 (155)
81 cd01080 NAD_bind_m-THF_DH_Cycl 96.0 0.013 2.7E-07 53.7 5.8 34 37-72 42-76 (168)
82 PF01113 DapB_N: Dihydrodipico 96.0 0.013 2.7E-07 50.8 5.2 98 42-178 2-101 (124)
83 PF00056 Ldh_1_N: lactate/mala 95.9 0.032 6.9E-07 49.4 7.8 75 41-139 1-79 (141)
84 cd05291 HicDH_like L-2-hydroxy 95.9 0.026 5.5E-07 56.6 8.0 72 42-139 2-78 (306)
85 PRK14106 murD UDP-N-acetylmura 95.9 0.029 6.4E-07 58.9 8.7 36 37-74 3-38 (450)
86 PF01118 Semialdhyde_dh: Semia 95.9 0.05 1.1E-06 46.7 8.5 96 42-175 1-98 (121)
87 PF03446 NAD_binding_2: NAD bi 95.9 0.024 5.1E-07 51.3 6.7 122 41-186 2-136 (163)
88 COG1086 Predicted nucleoside-d 95.8 0.066 1.4E-06 57.2 10.6 101 11-136 227-332 (588)
89 cd05213 NAD_bind_Glutamyl_tRNA 95.7 0.042 9.1E-07 55.2 8.6 82 37-148 176-257 (311)
90 PRK00066 ldh L-lactate dehydro 95.7 0.032 6.9E-07 56.2 7.4 75 40-138 6-82 (315)
91 KOG4169 15-hydroxyprostaglandi 95.6 0.037 8E-07 52.7 7.2 76 40-136 5-90 (261)
92 COG0569 TrkA K+ transport syst 95.6 0.1 2.2E-06 50.0 10.3 95 41-173 1-98 (225)
93 PF00070 Pyr_redox: Pyridine n 95.6 0.026 5.7E-07 44.6 5.2 54 42-107 1-54 (80)
94 cd05311 NAD_bind_2_malic_enz N 95.6 0.016 3.5E-07 55.5 4.7 38 36-74 22-61 (226)
95 PLN00203 glutamyl-tRNA reducta 95.5 0.034 7.4E-07 59.7 7.1 77 37-140 264-340 (519)
96 PF01210 NAD_Gly3P_dh_N: NAD-d 95.4 0.038 8.2E-07 49.8 6.4 90 42-150 1-90 (157)
97 COG1648 CysG Siroheme synthase 95.4 0.031 6.7E-07 53.0 6.0 84 37-151 10-94 (210)
98 cd05290 LDH_3 A subgroup of L- 95.4 0.054 1.2E-06 54.4 7.9 73 42-138 1-77 (307)
99 PRK00045 hemA glutamyl-tRNA re 95.2 0.045 9.8E-07 57.4 6.9 83 37-149 180-265 (423)
100 PRK07066 3-hydroxybutyryl-CoA 95.1 0.069 1.5E-06 53.9 7.8 33 41-74 8-40 (321)
101 TIGR00507 aroE shikimate 5-deh 95.1 0.095 2.1E-06 51.5 8.5 72 40-139 117-188 (270)
102 PRK06197 short chain dehydroge 95.0 0.097 2.1E-06 51.9 8.5 36 36-73 13-49 (306)
103 PTZ00082 L-lactate dehydrogena 95.0 0.1 2.2E-06 52.8 8.7 34 40-73 6-39 (321)
104 PRK07819 3-hydroxybutyryl-CoA 94.9 0.083 1.8E-06 52.5 7.7 33 41-74 6-38 (286)
105 PRK06141 ornithine cyclodeamin 94.9 0.1 2.3E-06 52.5 8.5 74 40-139 125-199 (314)
106 PRK09599 6-phosphogluconate de 94.6 0.097 2.1E-06 52.2 7.4 115 42-178 2-123 (301)
107 PF03807 F420_oxidored: NADP o 94.6 0.041 9E-07 44.7 3.9 78 42-149 1-81 (96)
108 PRK01438 murD UDP-N-acetylmura 94.6 0.14 3E-06 54.4 8.9 43 29-73 5-48 (480)
109 TIGR02992 ectoine_eutC ectoine 94.5 0.16 3.5E-06 51.4 8.7 75 40-139 129-204 (326)
110 PRK07340 ornithine cyclodeamin 94.5 0.15 3.3E-06 51.0 8.4 73 40-139 125-198 (304)
111 PLN02602 lactate dehydrogenase 94.5 0.16 3.4E-06 52.0 8.6 73 41-138 38-114 (350)
112 PLN02819 lysine-ketoglutarate 94.5 0.25 5.4E-06 57.2 11.0 86 40-151 569-669 (1042)
113 KOG0069 Glyoxylate/hydroxypyru 94.5 0.13 2.7E-06 52.1 7.6 100 31-175 154-254 (336)
114 cd05191 NAD_bind_amino_acid_DH 94.4 0.079 1.7E-06 42.6 5.0 36 37-73 21-56 (86)
115 PF02719 Polysacc_synt_2: Poly 94.4 0.078 1.7E-06 52.7 5.9 41 43-83 1-42 (293)
116 PRK06130 3-hydroxybutyryl-CoA 94.4 0.23 4.9E-06 49.7 9.3 32 41-73 5-36 (311)
117 PRK05854 short chain dehydroge 94.3 0.25 5.4E-06 49.4 9.6 64 37-121 12-76 (313)
118 cd05293 LDH_1 A subgroup of L- 94.3 0.12 2.5E-06 52.1 7.0 74 40-138 3-80 (312)
119 PRK07062 short chain dehydroge 94.3 0.29 6.2E-06 47.2 9.6 64 37-121 6-70 (265)
120 PRK15469 ghrA bifunctional gly 94.3 0.18 4E-06 50.7 8.4 94 35-174 132-226 (312)
121 PRK05476 S-adenosyl-L-homocyst 94.2 0.18 4E-06 52.8 8.6 36 37-74 210-245 (425)
122 PRK12480 D-lactate dehydrogena 94.2 0.31 6.8E-06 49.4 10.0 91 36-174 143-234 (330)
123 PRK09242 tropinone reductase; 94.2 0.3 6.5E-06 46.8 9.4 64 37-121 7-71 (257)
124 PRK07502 cyclohexadienyl dehyd 94.1 0.32 7E-06 48.6 9.8 34 40-73 6-40 (307)
125 TIGR00872 gnd_rel 6-phosphoglu 94.0 0.14 3.1E-06 51.0 7.1 32 42-74 2-33 (298)
126 PF02558 ApbA: Ketopantoate re 94.0 0.046 1E-06 48.3 3.2 81 43-150 1-88 (151)
127 PRK08618 ornithine cyclodeamin 94.0 0.24 5.2E-06 50.1 8.7 76 40-140 127-203 (325)
128 cd00300 LDH_like L-lactate deh 94.0 0.19 4.2E-06 50.2 7.9 72 43-139 1-76 (300)
129 COG1893 ApbA Ketopantoate redu 93.9 0.26 5.7E-06 49.5 8.7 82 41-149 1-87 (307)
130 PRK14619 NAD(P)H-dependent gly 93.9 0.18 3.9E-06 50.4 7.6 33 40-73 4-36 (308)
131 PRK10637 cysG siroheme synthas 93.9 0.46 1E-05 50.4 10.9 85 37-151 10-94 (457)
132 PTZ00142 6-phosphogluconate de 93.9 0.089 1.9E-06 55.9 5.4 119 41-178 2-130 (470)
133 PRK14192 bifunctional 5,10-met 93.8 0.13 2.9E-06 51.0 6.3 34 37-72 157-191 (283)
134 PRK07063 short chain dehydroge 93.8 0.37 8E-06 46.3 9.2 64 37-121 5-69 (260)
135 PRK08251 short chain dehydroge 93.8 0.44 9.6E-06 45.2 9.7 62 40-121 2-64 (248)
136 PLN02520 bifunctional 3-dehydr 93.6 0.14 2.9E-06 55.4 6.4 34 37-72 377-410 (529)
137 PLN02350 phosphogluconate dehy 93.5 0.53 1.1E-05 50.4 10.6 121 40-178 6-136 (493)
138 TIGR01850 argC N-acetyl-gamma- 93.4 0.24 5.3E-06 50.5 7.5 95 42-174 2-99 (346)
139 PRK12826 3-ketoacyl-(acyl-carr 93.3 0.25 5.5E-06 46.7 7.1 36 37-74 4-40 (251)
140 PRK08291 ectoine utilization p 93.2 0.41 9E-06 48.5 8.8 75 40-139 132-207 (330)
141 PRK00094 gpsA NAD(P)H-dependen 93.2 0.25 5.5E-06 49.3 7.3 32 42-74 3-34 (325)
142 PRK07831 short chain dehydroge 93.1 0.5 1.1E-05 45.4 9.0 34 37-72 15-50 (262)
143 PRK13304 L-aspartate dehydroge 93.1 0.42 9.2E-06 46.9 8.6 33 41-73 2-36 (265)
144 PRK07680 late competence prote 93.0 0.66 1.4E-05 45.5 9.8 79 42-150 2-83 (273)
145 PTZ00117 malate dehydrogenase; 93.0 0.16 3.4E-06 51.4 5.4 34 40-73 5-38 (319)
146 TIGR00873 gnd 6-phosphoglucona 92.9 0.25 5.5E-06 52.5 7.1 117 42-178 1-127 (467)
147 PRK07231 fabG 3-ketoacyl-(acyl 92.9 0.33 7E-06 46.1 7.3 36 37-74 3-39 (251)
148 PLN03209 translocon at the inn 92.9 1.1 2.3E-05 48.8 11.7 79 40-138 80-168 (576)
149 PRK00048 dihydrodipicolinate r 92.9 0.67 1.5E-05 45.2 9.5 92 41-179 2-95 (257)
150 PF02737 3HCDH_N: 3-hydroxyacy 92.8 0.17 3.7E-06 46.7 4.9 96 42-150 1-100 (180)
151 cd05292 LDH_2 A subgroup of L- 92.8 1.1 2.4E-05 44.9 11.2 33 42-74 2-35 (308)
152 TIGR01035 hemA glutamyl-tRNA r 92.6 0.17 3.6E-06 53.1 5.1 36 37-73 178-213 (417)
153 PF02826 2-Hacid_dh_C: D-isome 92.6 0.21 4.5E-06 45.9 5.1 95 35-174 32-127 (178)
154 PLN02780 ketoreductase/ oxidor 92.6 0.57 1.2E-05 47.1 8.8 60 40-119 53-113 (320)
155 PRK12550 shikimate 5-dehydroge 92.5 0.2 4.4E-06 49.4 5.3 34 40-73 122-155 (272)
156 PRK10537 voltage-gated potassi 92.5 0.5 1.1E-05 49.1 8.4 94 40-137 240-357 (393)
157 PF00106 adh_short: short chai 92.5 0.53 1.1E-05 41.7 7.6 76 42-136 2-87 (167)
158 PRK07634 pyrroline-5-carboxyla 92.5 0.79 1.7E-05 43.9 9.4 81 40-150 4-87 (245)
159 TIGR03589 PseB UDP-N-acetylglu 92.5 0.57 1.2E-05 47.1 8.6 34 40-73 4-39 (324)
160 PTZ00325 malate dehydrogenase; 92.4 0.3 6.5E-06 49.4 6.5 33 40-72 8-42 (321)
161 COG1063 Tdh Threonine dehydrog 92.3 0.99 2.1E-05 46.1 10.2 35 40-74 169-203 (350)
162 PRK06567 putative bifunctional 92.2 0.73 1.6E-05 52.9 9.9 40 40-80 383-422 (1028)
163 PRK11559 garR tartronate semia 92.2 0.68 1.5E-05 45.8 8.8 32 41-73 3-34 (296)
164 PRK07576 short chain dehydroge 92.1 0.42 9E-06 46.3 7.0 36 36-73 6-42 (264)
165 PRK07523 gluconate 5-dehydroge 92.1 0.87 1.9E-05 43.5 9.2 35 37-73 8-43 (255)
166 TIGR01759 MalateDH-SF1 malate 92.1 0.32 6.9E-06 49.3 6.3 77 40-138 3-88 (323)
167 PRK12921 2-dehydropantoate 2-r 92.0 0.19 4.1E-06 49.8 4.5 30 42-72 2-31 (305)
168 PRK11199 tyrA bifunctional cho 92.0 0.51 1.1E-05 48.7 7.8 33 40-73 98-131 (374)
169 cd01339 LDH-like_MDH L-lactate 92.0 0.53 1.2E-05 46.9 7.7 31 43-73 1-31 (300)
170 PRK08217 fabG 3-ketoacyl-(acyl 91.9 0.51 1.1E-05 44.7 7.2 35 37-73 3-38 (253)
171 PRK09186 flagellin modificatio 91.9 0.63 1.4E-05 44.3 7.9 31 40-71 4-35 (256)
172 cd01075 NAD_bind_Leu_Phe_Val_D 91.9 0.26 5.6E-06 46.3 5.0 35 37-73 26-60 (200)
173 PF02254 TrkA_N: TrkA-N domain 91.8 2.2 4.8E-05 35.6 10.3 81 43-151 1-84 (116)
174 COG1052 LdhA Lactate dehydroge 91.8 0.43 9.3E-06 48.3 6.8 93 35-174 142-236 (324)
175 PRK14982 acyl-ACP reductase; P 91.7 0.24 5.2E-06 50.4 4.9 37 36-73 152-190 (340)
176 COG1250 FadB 3-hydroxyacyl-CoA 91.7 0.24 5.2E-06 49.6 4.7 92 41-150 4-104 (307)
177 PRK12384 sorbitol-6-phosphate 91.7 1.3 2.8E-05 42.3 9.8 33 40-73 2-35 (259)
178 TIGR01296 asd_B aspartate-semi 91.7 0.54 1.2E-05 47.9 7.4 91 42-174 1-92 (339)
179 PRK05708 2-dehydropantoate 2-r 91.6 0.25 5.3E-06 49.5 4.8 33 40-73 2-34 (305)
180 PRK07478 short chain dehydroge 91.5 0.71 1.5E-05 44.1 7.8 35 37-73 4-39 (254)
181 PRK08339 short chain dehydroge 91.4 1.1 2.4E-05 43.4 9.1 35 37-73 6-41 (263)
182 PRK09880 L-idonate 5-dehydroge 91.4 1.6 3.6E-05 43.9 10.7 34 40-73 170-203 (343)
183 PRK05875 short chain dehydroge 91.4 0.86 1.9E-05 44.1 8.3 35 37-73 5-40 (276)
184 PRK08374 homoserine dehydrogen 91.4 1.4 3.1E-05 44.7 10.2 99 40-150 2-112 (336)
185 TIGR02853 spore_dpaA dipicolin 91.3 0.3 6.4E-06 48.6 5.0 35 36-72 148-182 (287)
186 PRK07679 pyrroline-5-carboxyla 91.3 1.2 2.5E-05 43.9 9.2 81 40-150 3-86 (279)
187 TIGR01915 npdG NADPH-dependent 91.2 1.6 3.5E-05 41.3 9.8 84 42-149 2-88 (219)
188 PRK06181 short chain dehydroge 91.2 0.95 2.1E-05 43.4 8.3 32 41-73 2-34 (263)
189 PRK06928 pyrroline-5-carboxyla 91.2 1.6 3.6E-05 42.9 10.2 80 42-150 3-85 (277)
190 PLN02427 UDP-apiose/xylose syn 91.2 1.1 2.4E-05 46.0 9.2 36 36-72 11-47 (386)
191 PF03949 Malic_M: Malic enzyme 91.1 0.27 5.9E-06 47.9 4.4 39 35-74 21-69 (255)
192 PRK05867 short chain dehydroge 91.1 0.84 1.8E-05 43.6 7.9 34 37-72 7-41 (253)
193 COG0300 DltE Short-chain dehyd 91.1 1.1 2.5E-05 43.9 8.7 61 40-121 6-67 (265)
194 PRK11880 pyrroline-5-carboxyla 91.1 0.33 7.1E-06 47.3 5.0 79 41-150 3-83 (267)
195 PRK07814 short chain dehydroge 90.8 1 2.2E-05 43.4 8.2 35 37-73 8-43 (263)
196 cd05211 NAD_bind_Glu_Leu_Phe_V 90.8 0.36 7.9E-06 46.0 4.9 38 36-74 20-57 (217)
197 PRK00811 spermidine synthase; 90.8 0.78 1.7E-05 45.5 7.4 34 40-74 77-110 (283)
198 PRK00676 hemA glutamyl-tRNA re 90.8 0.35 7.6E-06 49.1 5.0 37 37-74 172-208 (338)
199 PRK05866 short chain dehydroge 90.8 0.74 1.6E-05 45.5 7.3 37 35-73 36-73 (293)
200 PRK12769 putative oxidoreducta 90.8 1.1 2.3E-05 49.8 9.2 33 40-73 327-359 (654)
201 PRK06125 short chain dehydroge 90.8 1.3 2.9E-05 42.3 8.9 35 37-73 5-40 (259)
202 PRK06522 2-dehydropantoate 2-r 90.7 0.35 7.5E-06 47.8 4.9 31 42-73 2-32 (304)
203 PRK06194 hypothetical protein; 90.7 0.98 2.1E-05 44.0 8.0 35 37-73 4-39 (287)
204 PRK05872 short chain dehydroge 90.6 1.5 3.3E-05 43.3 9.4 35 37-73 7-42 (296)
205 PF13460 NAD_binding_10: NADH( 90.6 1.7 3.6E-05 39.3 8.9 66 43-138 1-69 (183)
206 TIGR01373 soxB sarcosine oxida 90.6 0.45 9.7E-06 49.2 5.8 39 40-78 30-69 (407)
207 cd00650 LDH_MDH_like NAD-depen 90.6 0.55 1.2E-05 45.8 6.1 32 43-74 1-36 (263)
208 PRK09496 trkA potassium transp 90.6 1.4 3E-05 46.2 9.5 83 42-151 2-87 (453)
209 PRK00436 argC N-acetyl-gamma-g 90.6 1.1 2.5E-05 45.6 8.5 95 41-174 3-99 (343)
210 PLN02688 pyrroline-5-carboxyla 90.5 1 2.2E-05 43.8 7.9 78 42-150 2-82 (266)
211 PRK06476 pyrroline-5-carboxyla 90.5 1.3 2.9E-05 42.9 8.7 77 42-148 2-80 (258)
212 cd00762 NAD_bind_malic_enz NAD 90.5 0.24 5.3E-06 48.2 3.4 40 35-75 21-70 (254)
213 TIGR03026 NDP-sugDHase nucleot 90.4 1.1 2.3E-05 46.8 8.5 41 42-83 2-42 (411)
214 PRK05671 aspartate-semialdehyd 90.4 0.96 2.1E-05 46.0 7.8 92 41-174 5-97 (336)
215 PRK06249 2-dehydropantoate 2-r 90.4 0.4 8.7E-06 48.1 5.0 34 40-74 5-38 (313)
216 PRK06523 short chain dehydroge 90.4 0.81 1.8E-05 43.8 7.0 75 37-115 7-83 (260)
217 PLN02240 UDP-glucose 4-epimera 90.3 2.7 5.7E-05 42.2 11.0 33 37-71 3-36 (352)
218 PRK09496 trkA potassium transp 90.3 1.7 3.8E-05 45.5 10.0 81 40-146 231-314 (453)
219 cd08230 glucose_DH Glucose deh 90.3 2.1 4.4E-05 43.4 10.2 32 40-72 173-204 (355)
220 PRK15409 bifunctional glyoxyla 90.3 0.78 1.7E-05 46.4 7.0 93 36-174 142-236 (323)
221 PRK02705 murD UDP-N-acetylmura 90.3 1.4 3.1E-05 46.4 9.3 33 41-74 1-33 (459)
222 COG0240 GpsA Glycerol-3-phosph 90.2 1.4 2.9E-05 44.6 8.5 91 41-150 2-92 (329)
223 PRK08655 prephenate dehydrogen 90.2 0.74 1.6E-05 48.6 7.0 31 42-73 2-33 (437)
224 PRK08040 putative semialdehyde 90.2 1.2 2.6E-05 45.3 8.3 91 40-174 4-97 (336)
225 PRK11908 NAD-dependent epimera 90.2 2.8 6.1E-05 42.2 11.1 32 41-73 2-35 (347)
226 PRK05335 tRNA (uracil-5-)-meth 90.2 0.38 8.2E-06 50.5 4.7 33 40-73 2-34 (436)
227 PRK01710 murD UDP-N-acetylmura 90.2 1.4 3.1E-05 46.5 9.3 41 32-74 7-47 (458)
228 PRK12367 short chain dehydroge 90.2 0.57 1.2E-05 45.2 5.7 42 31-74 6-48 (245)
229 PRK08589 short chain dehydroge 90.2 1.5 3.1E-05 42.7 8.6 34 37-72 4-38 (272)
230 PF12847 Methyltransf_18: Meth 90.1 2.3 4.9E-05 35.0 8.7 77 40-137 2-78 (112)
231 cd05312 NAD_bind_1_malic_enz N 90.1 0.38 8.2E-06 47.5 4.4 40 35-75 21-70 (279)
232 PRK06138 short chain dehydroge 90.1 1.2 2.7E-05 42.1 8.0 35 37-73 3-38 (252)
233 TIGR01202 bchC 2-desacetyl-2-h 90.1 1.5 3.2E-05 43.6 8.9 33 40-72 145-177 (308)
234 TIGR01505 tartro_sem_red 2-hyd 90.1 0.37 8.1E-06 47.6 4.4 31 42-73 1-31 (291)
235 PRK13403 ketol-acid reductoiso 90.0 0.45 9.8E-06 48.0 4.9 82 33-149 10-91 (335)
236 PRK06035 3-hydroxyacyl-CoA deh 90.0 0.45 9.8E-06 47.1 5.0 33 41-74 4-36 (291)
237 PRK05565 fabG 3-ketoacyl-(acyl 90.0 0.93 2E-05 42.7 7.0 34 37-72 3-38 (247)
238 PRK14874 aspartate-semialdehyd 90.0 1.1 2.5E-05 45.4 8.0 92 41-174 2-94 (334)
239 PRK07530 3-hydroxybutyryl-CoA 90.0 0.46 1E-05 47.0 5.1 33 40-73 4-36 (292)
240 PRK09260 3-hydroxybutyryl-CoA 90.0 0.44 9.6E-06 47.1 4.9 33 41-74 2-34 (288)
241 PRK06940 short chain dehydroge 89.9 1.2 2.5E-05 43.5 7.8 32 40-73 2-33 (275)
242 PLN02383 aspartate semialdehyd 89.9 1.3 2.9E-05 45.1 8.4 91 40-174 7-100 (344)
243 PRK12439 NAD(P)H-dependent gly 89.9 0.85 1.8E-05 46.4 6.9 92 40-150 7-98 (341)
244 PRK11259 solA N-methyltryptoph 89.7 0.43 9.3E-06 48.5 4.7 35 40-75 3-37 (376)
245 PLN02253 xanthoxin dehydrogena 89.7 1.3 2.7E-05 43.1 7.8 36 36-73 15-51 (280)
246 PTZ00345 glycerol-3-phosphate 89.7 0.64 1.4E-05 47.9 5.9 89 40-150 11-114 (365)
247 PRK03562 glutathione-regulated 89.7 0.91 2E-05 50.1 7.5 84 40-151 400-486 (621)
248 PRK07453 protochlorophyllide o 89.7 1.2 2.7E-05 44.3 7.9 33 40-73 6-39 (322)
249 PRK07666 fabG 3-ketoacyl-(acyl 89.6 1.3 2.9E-05 41.7 7.7 35 37-73 5-40 (239)
250 PRK15461 NADH-dependent gamma- 89.6 1.3 2.8E-05 44.1 7.8 33 41-74 2-34 (296)
251 PRK13302 putative L-aspartate 89.5 1.7 3.7E-05 42.8 8.5 23 40-62 6-28 (271)
252 TIGR03466 HpnA hopanoid-associ 89.5 1.9 4.1E-05 42.5 9.0 32 42-74 2-34 (328)
253 PRK06057 short chain dehydroge 89.4 0.64 1.4E-05 44.5 5.4 37 37-75 5-42 (255)
254 PRK12409 D-amino acid dehydrog 89.4 0.51 1.1E-05 48.8 5.0 33 41-74 2-34 (410)
255 PRK06223 malate dehydrogenase; 89.4 0.54 1.2E-05 46.9 5.1 32 41-72 3-34 (307)
256 PRK06196 oxidoreductase; Provi 89.4 1.6 3.5E-05 43.4 8.5 35 37-73 24-59 (315)
257 PRK07067 sorbitol dehydrogenas 89.4 0.71 1.5E-05 44.2 5.7 37 37-75 4-41 (257)
258 PRK07326 short chain dehydroge 89.4 1.3 2.9E-05 41.5 7.5 33 40-73 6-39 (237)
259 PF01266 DAO: FAD dependent ox 89.4 0.59 1.3E-05 46.4 5.3 34 42-76 1-34 (358)
260 PRK08306 dipicolinate synthase 89.3 0.57 1.2E-05 46.8 5.1 35 37-73 150-184 (296)
261 PRK06172 short chain dehydroge 89.3 1.3 2.8E-05 42.2 7.4 35 37-73 5-40 (253)
262 PF01494 FAD_binding_3: FAD bi 89.2 0.56 1.2E-05 46.5 5.1 33 41-74 2-34 (356)
263 PRK08293 3-hydroxybutyryl-CoA 89.2 0.58 1.2E-05 46.3 5.0 32 41-73 4-35 (287)
264 PRK12771 putative glutamate sy 89.2 1.8 3.9E-05 47.1 9.3 34 40-74 137-170 (564)
265 COG0039 Mdh Malate/lactate deh 89.2 0.5 1.1E-05 47.5 4.5 33 41-73 1-34 (313)
266 TIGR01181 dTDP_gluc_dehyt dTDP 89.2 2.6 5.7E-05 41.2 9.7 31 42-72 1-33 (317)
267 TIGR01318 gltD_gamma_fam gluta 89.1 1.8 4E-05 45.9 9.1 33 40-73 141-173 (467)
268 COG1712 Predicted dinucleotide 89.1 1.8 3.9E-05 41.4 7.9 32 42-74 2-36 (255)
269 TIGR01771 L-LDH-NAD L-lactate 89.1 0.79 1.7E-05 45.8 5.9 68 45-138 1-73 (299)
270 PRK14175 bifunctional 5,10-met 89.1 0.72 1.6E-05 45.8 5.6 35 36-72 155-190 (286)
271 PRK07024 short chain dehydroge 89.1 1.3 2.9E-05 42.4 7.4 33 40-73 2-35 (257)
272 PRK08594 enoyl-(acyl carrier p 89.1 1.8 3.9E-05 41.7 8.3 34 37-72 5-41 (257)
273 PRK04207 glyceraldehyde-3-phos 89.0 1.6 3.5E-05 44.5 8.2 39 124-176 73-111 (341)
274 PLN02206 UDP-glucuronate decar 89.0 2.5 5.5E-05 44.6 9.9 32 40-72 119-151 (442)
275 PRK06949 short chain dehydroge 88.9 1.9 4.2E-05 41.0 8.4 35 37-73 7-42 (258)
276 TIGR00137 gid_trmFO tRNA:m(5)U 88.9 0.53 1.2E-05 49.5 4.7 33 41-74 1-33 (433)
277 PRK06728 aspartate-semialdehyd 88.9 1.5 3.3E-05 44.7 7.9 91 40-174 5-99 (347)
278 PLN02545 3-hydroxybutyryl-CoA 88.9 0.62 1.3E-05 46.2 5.0 33 41-74 5-37 (295)
279 PRK06139 short chain dehydroge 88.9 1.7 3.7E-05 43.9 8.3 35 37-73 5-40 (330)
280 PRK13303 L-aspartate dehydroge 88.8 2.2 4.7E-05 41.9 8.8 22 41-62 2-23 (265)
281 TIGR01292 TRX_reduct thioredox 88.8 2.2 4.7E-05 41.5 8.8 32 42-74 2-33 (300)
282 PRK03659 glutathione-regulated 88.7 2.2 4.9E-05 46.8 9.7 84 40-151 400-486 (601)
283 PF02629 CoA_binding: CoA bind 88.7 1.6 3.5E-05 35.8 6.6 80 40-150 3-83 (96)
284 PRK07792 fabG 3-ketoacyl-(acyl 88.7 2.7 5.9E-05 41.7 9.5 78 36-136 9-96 (306)
285 PLN02852 ferredoxin-NADP+ redu 88.7 2 4.4E-05 46.0 9.1 42 40-83 26-69 (491)
286 PRK05855 short chain dehydroge 88.7 1.6 3.4E-05 46.8 8.4 39 32-72 308-347 (582)
287 PRK05808 3-hydroxybutyryl-CoA 88.7 0.62 1.4E-05 45.9 4.8 33 41-74 4-36 (282)
288 COG0665 DadA Glycine/D-amino a 88.7 0.72 1.6E-05 46.9 5.4 40 40-80 4-43 (387)
289 PTZ00431 pyrroline carboxylate 88.6 1.2 2.5E-05 43.6 6.6 73 40-150 3-78 (260)
290 PRK06129 3-hydroxyacyl-CoA deh 88.6 0.62 1.3E-05 46.6 4.8 33 41-74 3-35 (308)
291 PRK12939 short chain dehydroge 88.6 2.2 4.7E-05 40.3 8.4 34 37-72 5-39 (250)
292 PRK13243 glyoxylate reductase; 88.6 0.62 1.3E-05 47.3 4.9 95 36-176 147-242 (333)
293 TIGR03376 glycerol3P_DH glycer 88.5 3.3 7.2E-05 42.3 10.0 88 42-150 1-103 (342)
294 PRK13394 3-hydroxybutyrate deh 88.4 1.6 3.4E-05 41.7 7.4 35 37-73 5-40 (262)
295 PLN02928 oxidoreductase family 88.4 0.43 9.4E-06 48.8 3.6 106 35-174 155-262 (347)
296 TIGR01377 soxA_mon sarcosine o 88.3 0.66 1.4E-05 47.2 4.9 33 42-75 2-34 (380)
297 PRK05653 fabG 3-ketoacyl-(acyl 88.2 1.6 3.6E-05 40.8 7.2 33 40-73 5-38 (246)
298 PRK12829 short chain dehydroge 88.2 1.8 4E-05 41.2 7.7 37 35-73 7-44 (264)
299 PRK07109 short chain dehydroge 88.1 2.7 5.8E-05 42.5 9.2 35 37-73 6-41 (334)
300 PRK06046 alanine dehydrogenase 88.1 2.3 4.9E-05 43.0 8.6 74 40-139 129-203 (326)
301 PRK12809 putative oxidoreducta 88.1 2.8 6.2E-05 46.4 10.0 34 40-74 310-343 (639)
302 PRK06935 2-deoxy-D-gluconate 3 88.1 2.1 4.6E-05 40.9 8.1 35 37-73 13-48 (258)
303 PRK06124 gluconate 5-dehydroge 88.1 3.1 6.7E-05 39.6 9.2 35 37-73 9-44 (256)
304 PRK13301 putative L-aspartate 88.1 0.65 1.4E-05 45.5 4.4 102 40-151 2-111 (267)
305 TIGR00518 alaDH alanine dehydr 88.0 0.72 1.6E-05 47.6 5.0 35 37-73 165-199 (370)
306 TIGR01316 gltA glutamate synth 88.0 2.9 6.3E-05 44.1 9.7 33 40-73 133-165 (449)
307 PLN02657 3,8-divinyl protochlo 88.0 3.4 7.4E-05 42.8 10.0 33 40-73 60-93 (390)
308 PF03447 NAD_binding_3: Homose 87.9 1.9 4.1E-05 36.4 6.7 84 47-175 1-91 (117)
309 PRK08303 short chain dehydroge 87.9 3.4 7.3E-05 41.2 9.6 35 37-73 6-41 (305)
310 PRK07984 enoyl-(acyl carrier p 87.9 2.5 5.4E-05 41.0 8.5 34 37-72 4-40 (262)
311 PRK08229 2-dehydropantoate 2-r 87.9 0.61 1.3E-05 47.1 4.3 32 41-73 3-34 (341)
312 PRK12748 3-ketoacyl-(acyl-carr 87.9 1.1 2.4E-05 42.9 5.9 35 37-73 3-40 (256)
313 PRK07102 short chain dehydroge 87.8 3.2 7E-05 39.2 9.0 32 41-73 2-34 (243)
314 PRK12779 putative bifunctional 87.8 3.2 6.9E-05 48.1 10.5 92 40-139 306-402 (944)
315 PRK12490 6-phosphogluconate de 87.7 1.8 3.9E-05 43.1 7.5 32 42-74 2-33 (299)
316 COG0281 SfcA Malic enzyme [Ene 87.7 0.59 1.3E-05 48.4 4.0 91 35-150 195-291 (432)
317 TIGR01757 Malate-DH_plant mala 87.7 1.3 2.9E-05 45.9 6.6 77 40-138 44-129 (387)
318 TIGR01763 MalateDH_bact malate 87.5 0.85 1.8E-05 45.7 5.0 32 41-72 2-33 (305)
319 PRK10669 putative cation:proto 87.5 1.3 2.8E-05 48.1 6.8 94 40-136 417-535 (558)
320 PRK12491 pyrroline-5-carboxyla 87.5 2.3 5.1E-05 41.8 8.0 80 40-150 2-84 (272)
321 PRK08818 prephenate dehydrogen 87.5 1.9 4.2E-05 44.5 7.6 33 40-72 4-37 (370)
322 PRK06720 hypothetical protein; 87.5 4.1 8.8E-05 37.1 9.1 35 37-73 14-49 (169)
323 PLN02256 arogenate dehydrogena 87.4 0.84 1.8E-05 45.8 4.9 32 40-72 36-67 (304)
324 PRK14618 NAD(P)H-dependent gly 87.4 0.82 1.8E-05 46.1 4.9 33 40-73 4-36 (328)
325 PLN00106 malate dehydrogenase 87.4 0.99 2.1E-05 45.7 5.4 35 40-74 18-54 (323)
326 PLN02989 cinnamyl-alcohol dehy 87.3 2.7 5.8E-05 41.8 8.5 33 40-73 5-38 (325)
327 PRK08264 short chain dehydroge 87.2 0.86 1.9E-05 42.9 4.7 37 37-74 4-41 (238)
328 PRK14620 NAD(P)H-dependent gly 87.2 0.85 1.8E-05 45.9 4.9 32 42-74 2-33 (326)
329 TIGR03206 benzo_BadH 2-hydroxy 87.2 2.6 5.7E-05 39.8 8.1 33 40-73 3-36 (250)
330 PRK05479 ketol-acid reductoiso 87.2 0.89 1.9E-05 46.1 4.9 79 35-147 13-91 (330)
331 PF10727 Rossmann-like: Rossma 87.2 1.8 3.9E-05 37.7 6.2 80 40-154 10-89 (127)
332 PRK13018 cell division protein 87.1 0.73 1.6E-05 47.6 4.4 50 37-87 26-79 (378)
333 PRK06198 short chain dehydroge 87.1 1.6 3.4E-05 41.8 6.5 36 37-73 4-40 (260)
334 PRK15438 erythronate-4-phospha 87.1 0.84 1.8E-05 47.2 4.8 35 36-72 113-147 (378)
335 cd00401 AdoHcyase S-adenosyl-L 87.1 0.91 2E-05 47.5 5.1 36 37-74 200-235 (413)
336 PRK05876 short chain dehydroge 87.1 2.4 5.2E-05 41.4 7.8 35 37-73 4-39 (275)
337 PRK09291 short chain dehydroge 86.9 3.5 7.6E-05 39.2 8.8 32 40-72 2-34 (257)
338 PRK07417 arogenate dehydrogena 86.8 0.88 1.9E-05 44.8 4.7 31 42-73 2-32 (279)
339 PRK09126 hypothetical protein; 86.8 0.79 1.7E-05 46.9 4.5 35 40-75 3-37 (392)
340 PRK08265 short chain dehydroge 86.8 1.2 2.6E-05 42.9 5.5 36 37-74 4-40 (261)
341 PRK06199 ornithine cyclodeamin 86.8 3.5 7.5E-05 42.7 9.2 81 35-139 148-233 (379)
342 PRK00711 D-amino acid dehydrog 86.8 0.95 2.1E-05 46.8 5.1 32 42-74 2-33 (416)
343 TIGR00036 dapB dihydrodipicoli 86.8 2.4 5.2E-05 41.6 7.7 31 41-71 2-34 (266)
344 PRK07494 2-octaprenyl-6-methox 86.8 0.85 1.8E-05 46.7 4.7 34 40-74 7-40 (388)
345 TIGR03364 HpnW_proposed FAD de 86.7 0.97 2.1E-05 45.8 5.1 34 42-76 2-35 (365)
346 PRK06436 glycerate dehydrogena 86.7 0.62 1.3E-05 46.7 3.5 92 35-175 118-210 (303)
347 TIGR02028 ChlP geranylgeranyl 86.6 0.82 1.8E-05 47.4 4.5 31 42-73 2-32 (398)
348 PRK08277 D-mannonate oxidoredu 86.6 1.5 3.3E-05 42.5 6.2 35 37-73 8-43 (278)
349 PRK05717 oxidoreductase; Valid 86.6 1.3 2.7E-05 42.5 5.5 36 37-74 8-44 (255)
350 PRK11730 fadB multifunctional 86.6 0.36 7.8E-06 54.1 1.9 33 41-74 314-346 (715)
351 PRK12859 3-ketoacyl-(acyl-carr 86.6 4.1 8.9E-05 39.0 9.1 34 36-71 3-39 (256)
352 PRK08945 putative oxoacyl-(acy 86.5 1.3 2.9E-05 42.0 5.6 37 36-74 9-46 (247)
353 PF08659 KR: KR domain; Inter 86.5 3.7 8.1E-05 37.5 8.4 60 42-119 2-62 (181)
354 TIGR02371 ala_DH_arch alanine 86.5 3.3 7.1E-05 41.9 8.7 74 40-139 128-202 (325)
355 PRK01747 mnmC bifunctional tRN 86.4 0.88 1.9E-05 50.5 4.9 33 41-74 261-293 (662)
356 PRK09310 aroDE bifunctional 3- 86.4 0.99 2.1E-05 48.2 5.1 34 37-72 330-363 (477)
357 PRK07677 short chain dehydroge 86.4 2.8 6.1E-05 39.9 7.8 32 41-73 2-34 (252)
358 PRK00257 erythronate-4-phospha 86.4 0.96 2.1E-05 46.8 4.8 35 36-72 113-147 (381)
359 PRK08664 aspartate-semialdehyd 86.4 2.3 5E-05 43.4 7.5 31 40-70 3-34 (349)
360 PRK06398 aldose dehydrogenase; 86.3 2.7 5.8E-05 40.4 7.7 74 37-116 4-79 (258)
361 COG1064 AdhP Zn-dependent alco 86.3 3.9 8.5E-05 41.6 9.0 76 37-139 164-239 (339)
362 PRK07774 short chain dehydroge 86.3 1.3 2.9E-05 41.9 5.5 35 37-73 4-39 (250)
363 PRK07856 short chain dehydroge 86.3 2.6 5.6E-05 40.2 7.5 77 37-116 4-82 (252)
364 PLN00112 malate dehydrogenase 86.3 1.8 3.9E-05 45.7 6.8 82 34-139 94-186 (444)
365 PRK12827 short chain dehydroge 86.2 3.9 8.4E-05 38.4 8.6 34 37-72 4-38 (249)
366 PLN02968 Probable N-acetyl-gam 86.2 2.2 4.8E-05 44.2 7.3 97 40-175 38-135 (381)
367 smart00846 Gp_dh_N Glyceraldeh 86.2 0.76 1.6E-05 41.1 3.4 102 42-149 2-107 (149)
368 cd00704 MDH Malate dehydrogena 86.1 1 2.2E-05 45.6 4.7 34 41-74 1-41 (323)
369 PRK08416 7-alpha-hydroxysteroi 86.1 3.6 7.8E-05 39.5 8.5 32 37-70 6-38 (260)
370 PRK08125 bifunctional UDP-gluc 86.1 5.4 0.00012 44.3 10.9 34 40-73 315-349 (660)
371 PRK07825 short chain dehydroge 86.0 1.5 3.3E-05 42.4 5.8 34 40-74 5-39 (273)
372 PRK15181 Vi polysaccharide bio 86.0 4.8 0.0001 40.7 9.6 35 37-73 13-48 (348)
373 PRK06185 hypothetical protein; 86.0 1 2.2E-05 46.5 4.8 34 40-74 6-39 (407)
374 PRK05714 2-octaprenyl-3-methyl 85.9 0.94 2E-05 46.7 4.5 34 40-74 2-35 (405)
375 PRK09987 dTDP-4-dehydrorhamnos 85.9 2.2 4.8E-05 42.2 7.0 30 42-73 2-32 (299)
376 PRK00141 murD UDP-N-acetylmura 85.9 0.94 2E-05 48.2 4.6 37 35-73 11-47 (473)
377 PRK05650 short chain dehydroge 85.8 3.2 6.9E-05 40.1 7.9 31 42-73 2-33 (270)
378 PRK07608 ubiquinone biosynthes 85.8 1.1 2.3E-05 45.8 4.8 35 40-75 5-39 (388)
379 PRK06841 short chain dehydroge 85.8 1.2 2.7E-05 42.3 5.0 35 37-73 13-48 (255)
380 PRK08773 2-octaprenyl-3-methyl 85.7 0.96 2.1E-05 46.5 4.4 34 40-74 6-39 (392)
381 TIGR01772 MDH_euk_gproteo mala 85.7 1.1 2.4E-05 45.1 4.7 33 42-74 1-35 (312)
382 PRK00517 prmA ribosomal protei 85.7 13 0.00027 36.0 12.0 33 40-74 120-152 (250)
383 PF00670 AdoHcyase_NAD: S-aden 85.7 1.3 2.7E-05 40.3 4.6 37 37-75 21-57 (162)
384 PRK08340 glucose-1-dehydrogena 85.6 4.3 9.3E-05 38.9 8.7 31 42-73 2-33 (259)
385 TIGR01289 LPOR light-dependent 85.5 4.6 0.0001 40.3 9.1 34 40-73 3-37 (314)
386 PRK07236 hypothetical protein; 85.5 1.1 2.4E-05 45.9 4.8 34 40-74 6-39 (386)
387 PRK11101 glpA sn-glycerol-3-ph 85.4 1.2 2.5E-05 48.5 5.0 36 40-76 6-41 (546)
388 PRK12814 putative NADPH-depend 85.3 3.9 8.5E-05 45.4 9.2 33 40-73 193-225 (652)
389 PRK12937 short chain dehydroge 85.2 3.1 6.8E-05 39.1 7.5 31 40-71 5-36 (245)
390 TIGR00465 ilvC ketol-acid redu 85.2 1.1 2.4E-05 45.1 4.5 31 40-71 3-33 (314)
391 TIGR00065 ftsZ cell division p 85.2 1.3 2.8E-05 45.4 5.0 57 31-88 9-69 (349)
392 KOG1298 Squalene monooxygenase 85.2 1.1 2.4E-05 46.1 4.3 44 40-84 45-88 (509)
393 TIGR03451 mycoS_dep_FDH mycoth 85.2 5.8 0.00013 40.1 9.8 34 39-72 176-209 (358)
394 cd05298 GH4_GlvA_pagL_like Gly 85.1 4.2 9E-05 43.0 8.9 106 42-182 2-114 (437)
395 PRK07364 2-octaprenyl-6-methox 85.1 1.2 2.6E-05 46.0 4.8 34 40-74 18-51 (415)
396 TIGR02279 PaaC-3OHAcCoADH 3-hy 85.0 1.2 2.7E-05 47.8 5.0 34 40-74 5-38 (503)
397 PLN02494 adenosylhomocysteinas 85.0 1.3 2.9E-05 46.9 5.1 37 37-75 252-288 (477)
398 PLN02740 Alcohol dehydrogenase 85.0 5.5 0.00012 40.8 9.6 37 37-73 196-232 (381)
399 PF04321 RmlD_sub_bind: RmlD s 85.0 4.9 0.00011 39.6 8.9 56 42-114 2-58 (286)
400 PRK08013 oxidoreductase; Provi 84.9 1.2 2.5E-05 46.1 4.6 34 40-74 3-36 (400)
401 PRK08507 prephenate dehydrogen 84.9 1.4 3E-05 43.3 4.9 32 42-73 2-34 (275)
402 PRK07574 formate dehydrogenase 84.9 1.2 2.7E-05 46.1 4.8 97 35-175 188-285 (385)
403 TIGR02469 CbiT precorrin-6Y C5 84.9 20 0.00043 29.6 11.5 90 40-150 20-109 (124)
404 PLN02896 cinnamyl-alcohol dehy 84.9 4 8.7E-05 41.2 8.5 32 40-72 10-42 (353)
405 cd05296 GH4_P_beta_glucosidase 84.9 2.4 5.2E-05 44.5 6.9 90 42-150 2-98 (419)
406 PRK13984 putative oxidoreducta 84.9 4 8.7E-05 44.8 9.0 34 40-74 283-316 (604)
407 PRK06114 short chain dehydroge 84.8 3.6 7.8E-05 39.3 7.7 35 37-73 6-41 (254)
408 COG1023 Gnd Predicted 6-phosph 84.8 2.5 5.4E-05 40.9 6.3 115 42-178 2-123 (300)
409 PRK07904 short chain dehydroge 84.8 4.8 0.0001 38.7 8.6 34 40-73 8-42 (253)
410 PRK06500 short chain dehydroge 84.8 1.7 3.6E-05 41.1 5.3 35 37-73 4-39 (249)
411 PRK11154 fadJ multifunctional 84.8 1 2.2E-05 50.5 4.3 33 41-74 310-343 (708)
412 CHL00194 ycf39 Ycf39; Provisio 84.7 8.7 0.00019 38.2 10.7 31 42-73 2-33 (317)
413 PRK11728 hydroxyglutarate oxid 84.7 1.4 3E-05 45.5 5.0 34 40-74 2-37 (393)
414 PRK06270 homoserine dehydrogen 84.7 4.9 0.00011 40.9 9.0 23 40-62 2-24 (341)
415 KOG1430 C-3 sterol dehydrogena 84.7 42 0.00092 34.5 15.6 34 40-73 4-39 (361)
416 TIGR01832 kduD 2-deoxy-D-gluco 84.7 1.4 3.1E-05 41.7 4.8 34 37-72 3-37 (248)
417 PRK11749 dihydropyrimidine deh 84.7 4.8 0.0001 42.5 9.3 33 40-73 140-172 (457)
418 PRK08703 short chain dehydroge 84.6 2.3 4.9E-05 40.2 6.1 36 37-74 4-40 (239)
419 PRK12810 gltD glutamate syntha 84.6 5.3 0.00011 42.4 9.5 33 40-73 143-175 (471)
420 PRK06753 hypothetical protein; 84.6 1.4 3E-05 44.8 4.9 33 41-74 1-33 (373)
421 cd01337 MDH_glyoxysomal_mitoch 84.5 1.4 2.9E-05 44.4 4.7 32 42-73 2-35 (310)
422 PRK07889 enoyl-(acyl carrier p 84.5 3.8 8.3E-05 39.4 7.8 35 37-73 5-42 (256)
423 PRK06184 hypothetical protein; 84.5 1.2 2.5E-05 47.7 4.5 33 40-73 3-35 (502)
424 TIGR00936 ahcY adenosylhomocys 84.4 1.4 3E-05 46.0 4.9 36 37-74 193-228 (406)
425 PTZ00075 Adenosylhomocysteinas 84.4 1.5 3.2E-05 46.6 5.1 37 36-74 251-287 (476)
426 PRK07035 short chain dehydroge 84.4 1.8 3.9E-05 41.2 5.4 35 37-73 6-41 (252)
427 PRK06487 glycerate dehydrogena 84.3 1.3 2.9E-05 44.6 4.6 88 36-174 145-233 (317)
428 PLN02858 fructose-bisphosphate 84.3 4.1 9E-05 49.1 9.3 125 40-188 4-144 (1378)
429 PRK09853 putative selenate red 84.3 4.8 0.0001 46.8 9.5 34 40-74 539-572 (1019)
430 PRK08850 2-octaprenyl-6-methox 84.2 1.2 2.7E-05 46.0 4.4 33 40-73 4-36 (405)
431 PRK08226 short chain dehydroge 84.1 3.1 6.6E-05 39.8 6.9 36 36-73 3-39 (263)
432 PRK08643 acetoin reductase; Va 84.1 3 6.5E-05 39.7 6.8 33 40-73 2-35 (256)
433 TIGR02032 GG-red-SF geranylger 84.0 1.5 3.2E-05 42.4 4.7 33 42-75 2-34 (295)
434 cd01338 MDH_choloroplast_like 84.0 1.4 3E-05 44.6 4.6 33 40-72 2-41 (322)
435 PRK06847 hypothetical protein; 84.0 1.5 3.3E-05 44.5 4.9 34 40-74 4-37 (375)
436 PLN00016 RNA-binding protein; 83.9 5 0.00011 41.1 8.8 38 35-74 48-90 (378)
437 PRK07531 bifunctional 3-hydrox 83.9 1.5 3.2E-05 47.1 5.0 33 41-74 5-37 (495)
438 PRK08268 3-hydroxy-acyl-CoA de 83.9 1.5 3.2E-05 47.2 5.0 33 41-74 8-40 (507)
439 cd08239 THR_DH_like L-threonin 83.9 8.1 0.00018 38.5 10.1 34 40-73 164-197 (339)
440 PLN02166 dTDP-glucose 4,6-dehy 83.8 7 0.00015 41.2 10.0 33 40-73 120-153 (436)
441 PRK06701 short chain dehydroge 83.8 2.5 5.4E-05 41.6 6.3 56 11-72 22-78 (290)
442 PF05834 Lycopene_cycl: Lycope 83.8 3 6.4E-05 42.9 7.0 66 43-114 2-69 (374)
443 PLN02650 dihydroflavonol-4-red 83.8 4.7 0.0001 40.7 8.4 33 40-73 5-38 (351)
444 cd01076 NAD_bind_1_Glu_DH NAD( 83.8 1.6 3.5E-05 41.9 4.7 37 36-73 28-64 (227)
445 PRK08862 short chain dehydroge 83.7 5.7 0.00012 37.7 8.5 34 37-72 3-37 (227)
446 KOG0409 Predicted dehydrogenas 83.7 3.1 6.8E-05 41.4 6.6 31 40-71 35-65 (327)
447 PRK06200 2,3-dihydroxy-2,3-dih 83.7 2.1 4.5E-05 41.2 5.5 36 37-74 4-40 (263)
448 TIGR01500 sepiapter_red sepiap 83.7 4.5 9.7E-05 38.7 7.8 58 42-119 2-64 (256)
449 PLN02985 squalene monooxygenas 83.7 1.6 3.5E-05 47.0 5.1 34 40-74 43-76 (514)
450 PRK12744 short chain dehydroge 83.6 4.5 9.9E-05 38.6 7.8 32 37-69 6-38 (257)
451 PRK08020 ubiF 2-octaprenyl-3-m 83.6 1.4 3E-05 45.2 4.5 34 40-74 5-38 (391)
452 PRK08163 salicylate hydroxylas 83.6 1.5 3.3E-05 44.8 4.8 34 40-74 4-37 (396)
453 TIGR03315 Se_ygfK putative sel 83.6 6.9 0.00015 45.6 10.4 34 40-74 537-570 (1012)
454 PRK08244 hypothetical protein; 83.6 1.4 3.1E-05 46.9 4.7 33 40-73 2-34 (493)
455 PRK05442 malate dehydrogenase; 83.5 1.6 3.4E-05 44.3 4.8 33 40-72 4-43 (326)
456 PRK05732 2-octaprenyl-6-methox 83.5 1.4 3.1E-05 45.0 4.6 33 40-73 3-38 (395)
457 PLN02366 spermidine synthase 83.5 3.7 8.1E-05 41.2 7.4 33 40-74 92-125 (308)
458 PRK12266 glpD glycerol-3-phosp 83.5 1.9 4.2E-05 46.3 5.7 36 40-76 6-41 (508)
459 TIGR02023 BchP-ChlP geranylger 83.5 1.5 3.3E-05 45.1 4.7 31 42-73 2-32 (388)
460 PRK10538 malonic semialdehyde 83.4 2.8 6E-05 39.9 6.2 31 42-73 2-33 (248)
461 PRK08849 2-octaprenyl-3-methyl 83.4 1.4 3E-05 45.3 4.4 34 40-74 3-36 (384)
462 COG1062 AdhC Zn-dependent alco 83.4 7 0.00015 39.7 9.1 93 36-150 182-275 (366)
463 PRK07097 gluconate 5-dehydroge 83.4 3.8 8.2E-05 39.4 7.2 34 37-72 8-42 (265)
464 TIGR01758 MDH_euk_cyt malate d 83.4 1.4 3E-05 44.6 4.3 31 42-72 1-38 (324)
465 PRK07060 short chain dehydroge 83.3 1.9 4E-05 40.7 5.0 35 37-73 7-42 (245)
466 cd02201 FtsZ_type1 FtsZ is a G 83.3 1.1 2.3E-05 45.0 3.3 48 41-88 1-52 (304)
467 KOG1205 Predicted dehydrogenas 83.2 6.5 0.00014 39.0 8.7 84 31-135 4-97 (282)
468 cd08281 liver_ADH_like1 Zinc-d 83.2 7.7 0.00017 39.5 9.8 33 40-72 192-224 (371)
469 PRK06914 short chain dehydroge 83.2 3.6 7.9E-05 39.8 7.1 34 40-74 3-37 (280)
470 TIGR02632 RhaD_aldol-ADH rhamn 83.2 4.6 0.0001 45.0 8.7 33 40-73 414-447 (676)
471 PRK01581 speE spermidine synth 83.2 3.2 7E-05 42.7 6.8 34 40-74 151-184 (374)
472 TIGR01984 UbiH 2-polyprenyl-6- 83.2 1.4 3.1E-05 44.8 4.4 32 42-74 1-33 (382)
473 PLN02695 GDP-D-mannose-3',5'-e 83.1 7.2 0.00016 39.9 9.5 32 40-72 21-53 (370)
474 TIGR03329 Phn_aa_oxid putative 83.1 1.9 4.1E-05 45.6 5.4 43 40-83 24-68 (460)
475 PRK05868 hypothetical protein; 83.0 1.6 3.6E-05 44.7 4.8 33 41-74 2-34 (372)
476 PLN03139 formate dehydrogenase 83.0 1.5 3.3E-05 45.4 4.5 97 35-175 195-292 (386)
477 PRK14188 bifunctional 5,10-met 83.0 3 6.5E-05 41.7 6.4 33 37-71 156-189 (296)
478 PRK08063 enoyl-(acyl carrier p 83.0 3.8 8.3E-05 38.7 7.0 26 40-65 4-30 (250)
479 TIGR03325 BphB_TodD cis-2,3-di 83.0 2.6 5.6E-05 40.5 5.9 35 37-73 3-38 (262)
480 COG0111 SerA Phosphoglycerate 83.0 1.7 3.7E-05 44.0 4.8 94 36-174 139-233 (324)
481 cd01336 MDH_cytoplasmic_cytoso 82.9 1.7 3.7E-05 44.0 4.7 32 41-72 3-41 (325)
482 PRK08324 short chain dehydroge 82.9 3.9 8.4E-05 45.6 8.0 33 40-73 422-455 (681)
483 PRK08410 2-hydroxyacid dehydro 82.9 1.7 3.7E-05 43.7 4.7 91 35-174 141-232 (311)
484 PRK06179 short chain dehydroge 82.8 5.2 0.00011 38.5 8.0 34 40-74 4-38 (270)
485 COG0654 UbiH 2-polyprenyl-6-me 82.8 1.6 3.5E-05 44.9 4.6 33 40-73 2-34 (387)
486 PF13738 Pyr_redox_3: Pyridine 82.8 1.4 3.1E-05 40.4 3.8 34 36-71 164-197 (203)
487 PRK08278 short chain dehydroge 82.8 5.8 0.00013 38.5 8.4 35 37-73 4-39 (273)
488 PF13450 NAD_binding_8: NAD(P) 82.8 2.4 5.2E-05 32.5 4.5 28 45-73 1-28 (68)
489 TIGR01988 Ubi-OHases Ubiquinon 82.8 1.6 3.5E-05 44.3 4.6 33 42-75 1-33 (385)
490 PLN02464 glycerol-3-phosphate 82.7 1.6 3.4E-05 48.3 4.7 37 40-77 71-107 (627)
491 PRK08220 2,3-dihydroxybenzoate 82.7 4.7 0.0001 38.1 7.5 36 37-74 6-42 (252)
492 TIGR02415 23BDH acetoin reduct 82.6 4.9 0.00011 38.1 7.6 31 42-73 2-33 (254)
493 PRK07045 putative monooxygenas 82.6 1.7 3.8E-05 44.5 4.7 34 40-74 5-38 (388)
494 PRK09135 pteridine reductase; 82.5 9.5 0.00021 35.8 9.5 33 40-73 6-39 (249)
495 PRK12775 putative trifunctiona 82.5 7 0.00015 45.7 10.1 33 40-73 430-462 (1006)
496 PRK08243 4-hydroxybenzoate 3-m 82.4 1.8 4E-05 44.5 4.9 34 40-74 2-35 (392)
497 PRK12823 benD 1,6-dihydroxycyc 82.4 1.9 4.1E-05 41.2 4.7 35 36-72 5-40 (260)
498 TIGR01692 HIBADH 3-hydroxyisob 82.4 3 6.4E-05 41.2 6.1 29 45-74 1-29 (288)
499 PF05368 NmrA: NmrA-like famil 82.3 14 0.0003 34.8 10.6 70 43-138 1-73 (233)
500 KOG0024 Sorbitol dehydrogenase 82.3 1.6 3.5E-05 43.9 4.1 36 39-74 169-204 (354)
No 1
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-98 Score=714.26 Aligned_cols=415 Identities=48% Similarity=0.783 Sum_probs=398.1
Q ss_pred CCCCCccchhHHhhccCCCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCcc
Q 013224 3 DTAPSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNR 82 (447)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~R 82 (447)
+..++||.++..+|+|.++|.-..|.+++|..+.|. ++||||+|+||||||++|||+++||+.+++||+|+|+++||||
T Consensus 4 ~~~s~r~~~~~~~l~r~gpf~~~~f~~~~e~l~~l~-~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNR 82 (422)
T KOG2015|consen 4 PKPSKRWNGWRQSLERPGPFNLDAFEPSEENLEFLQ-DCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNR 82 (422)
T ss_pred CchhhhhHHHHHHhcCCCCCCCCCCCCCHHHHHHHh-hCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchh
Confidence 345789999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcc
Q 013224 83 QFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKP 162 (447)
Q Consensus 83 qfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~ 162 (447)
||||+++|||++||++||++++++.|++.|.+|..++++++.+|+++||+||+++|++++|+|||.+.+.+..+ |.+
T Consensus 83 QFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~---g~~ 159 (422)
T KOG2015|consen 83 QFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLE---GNY 159 (422)
T ss_pred hhcccccccCchhHHHHHHHHHhhCCCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhc---cCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887644 555
Q ss_pred cccCCCcEEEeeeccccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCC-CCCCC
Q 013224 163 REETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG-KSFDP 241 (447)
Q Consensus 163 ~~~~~~pli~~g~~g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~-~~~d~ 241 (447)
+...-+|+||||++|++||++++.|+.|+|++|+++.+|++.+||+||++++|+.|||||+|++.++|.+.++. .++++
T Consensus 160 d~~~iiPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~g 239 (422)
T KOG2015|consen 160 DISSIIPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDG 239 (422)
T ss_pred CccceeeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCC
Confidence 66678999999999999999999999999999999999999999999999999999999999999999998885 78999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEcCCCee
Q 013224 242 DDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLH 321 (447)
Q Consensus 242 dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~~~~~~~~~~~ 321 (447)
||++|++||++.+++||.+|+|+++++.++.|+++.||||+|+|||+||+.||.||+|+++....+++||++|++..|.+
T Consensus 240 dd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~y 319 (422)
T KOG2015|consen 240 DDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIY 319 (422)
T ss_pred CCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEeeeecCCCCccCCC-ceeEecCCCCCHHHHHHHHhcCCCcceeeceeeec-ccEEEecCCCChhhhhccccCCchHH
Q 013224 322 IKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR-GKNLYMQAPPVLEEMTRSNLSLPLYD 399 (447)
Q Consensus 322 ~~~~~~~~~p~C~vC~~-~~~~~~~~~~tl~~l~~~l~~~~~~~~~~~~i~~~-~~~ly~~~~~~l~~~~~~~L~k~l~e 399 (447)
++++.++|.++|++|+. ...+.+.+..||++++.+++ +.|++..|.+++. ...||++++|++++++++||.++|.|
T Consensus 320 tytf~~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls--~~~~lk~p~~tt~~~~~ly~~~~~~~e~~t~~nl~~~l~~ 397 (422)
T KOG2015|consen 320 TYTFLLERDKNCPVCSNLVQNYDISPTVTLEDVLNHLS--KSFQLKSPALTTAAGRTLYLSSVPSIEEATRKNLSQSLKE 397 (422)
T ss_pred EEEeeeccCCCCccccCCCcccccCCcccHHHHHHHhh--hhhccCCchhhhhhcceEeecCCcHHHHHhhhhhhhhHHH
Confidence 99999999999999998 77788888999999999997 5799999999864 47899999999999999999999999
Q ss_pred hhcccccceeeeccccccccCCcceeEEEEEEE
Q 013224 400 LMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVF 432 (447)
Q Consensus 400 l~~~g~~~~~~~~~~~~v~d~~~~~~~~~~~~~ 432 (447)
| .+| ++| +|||.+++..++|+|++
T Consensus 398 l-~dg--~~l------~vtd~~~~~~l~~~l~~ 421 (422)
T KOG2015|consen 398 L-SDG--QEL------VVTDKTLSTALTLQLRE 421 (422)
T ss_pred h-cCC--ceE------EEecccCCcceeEEEec
Confidence 9 888 899 99999999999999987
No 2
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=3.3e-79 Score=599.11 Aligned_cols=291 Identities=65% Similarity=1.109 Sum_probs=280.2
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
||+|||+||+|||++|+|+++|||+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|+++..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEEeCCCCCccccccCCCC
Q 013224 122 KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFP 201 (447)
Q Consensus 122 ~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~~p~~t~c~~C~~~~~p 201 (447)
++.+|+++||+||+|+||+++|+|+|+.|+.+..+. ++...+|||++|+.|+.|++++++|+.|+||+|.++..|
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~-----~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p 155 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYE-----DPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFP 155 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhcccc-----ccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCC
Confidence 889999999999999999999999999987554221 134679999999999999999999999999999999889
Q ss_pred CCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCccccccccccccccc
Q 013224 202 PQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPA 281 (447)
Q Consensus 202 ~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~gv~~~iiPa 281 (447)
++.++|.||++++|+.|+|||+||+.++|++++|..+||+||++|++||++.|++||++|||+++++.+++||++||||+
T Consensus 156 ~~~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPa 235 (291)
T cd01488 156 PQVTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPA 235 (291)
T ss_pred CCCCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEcCCCeeEeEeeeecCCCCccCC
Q 013224 282 IASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCG 337 (447)
Q Consensus 282 ia~t~Aivagl~a~EalK~ltg~~~~l~n~~~~~~~~~~~~~~~~~~~~p~C~vC~ 337 (447)
|++||||||++++.|++|+++++.+.++||++|.|..|.+++++..+|+|+|++|+
T Consensus 236 i~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~~~~~~~~~~~c~~c~ 291 (291)
T cd01488 236 VASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEHERKEDCPVCS 291 (291)
T ss_pred cCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEEEEEEEeeCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999996
No 3
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-78 Score=599.27 Aligned_cols=370 Identities=34% Similarity=0.568 Sum_probs=313.1
Q ss_pred HHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCce
Q 013224 31 TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV 110 (447)
Q Consensus 31 ~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v 110 (447)
.+.++.+. .+|||||||||+|||++|+|+++|+++|||||.|+|++|||||||||+++|||++||.+|++.++++||.+
T Consensus 4 ~~~~eai~-~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~ 82 (603)
T KOG2013|consen 4 REKHEAIK-SGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNI 82 (603)
T ss_pred HHHHHHhc-cCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCC
Confidence 45677788 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCcc--chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEEeCC
Q 013224 111 NIVPHFCRIED--KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPG 188 (447)
Q Consensus 111 ~i~~~~~~i~~--~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~~p~ 188 (447)
++.+|+..+.+ ++.+||++||+|++|+||.+||+++|++|+ ...+|||++|+.||.||++++++|
T Consensus 83 ~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~-------------~a~vPLIesGt~Gf~GQv~~ii~G 149 (603)
T KOG2013|consen 83 KLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCL-------------AASVPLIESGTGGFLGQVQVIIKG 149 (603)
T ss_pred ceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHH-------------hhcCCceecCcccccceEEEEecC
Confidence 99999999986 578999999999999999999999999995 789999999999999999999999
Q ss_pred CCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhcc----------------------------------
Q 013224 189 VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---------------------------------- 234 (447)
Q Consensus 189 ~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~---------------------------------- 234 (447)
.|+||+|... |.+++||.||||++|..|+|||.||+.+.|.+.|
T Consensus 150 kTECyeC~pK--~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~ 227 (603)
T KOG2013|consen 150 KTECYECIPK--PVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETE 227 (603)
T ss_pred CcceecccCC--CCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccch
Confidence 9999999953 6778899999999999999999999963322100
Q ss_pred --------------------------------------------------------------------------------
Q 013224 235 -------------------------------------------------------------------------------- 234 (447)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (447)
T Consensus 228 d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~ 307 (603)
T KOG2013|consen 228 DLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQN 307 (603)
T ss_pred HHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcc
Confidence
Q ss_pred --------------------------CC--CCCCCCChhHHHHHHHHHHHHHHHhCCCCCccccccccccccccccccHH
Q 013224 235 --------------------------SG--KSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTN 286 (447)
Q Consensus 235 --------------------------~~--~~~d~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~ 286 (447)
+. +.||+||...|+||+++||.|++.|||+..+.+++++|+||||||||+||
T Consensus 308 v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTN 387 (603)
T KOG2013|consen 308 VWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTN 387 (603)
T ss_pred eeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhh
Confidence 11 47999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcceEEEEcCCCeeE---eEeeeecCCCCccCCC-ceeEecC-CCCCHHHHHHHHhcCC
Q 013224 287 AIISAACALETLKIASGCSKTLSNYLTYNGVAGLHI---KVTEFVKDKDCLVCGP-GVLIELD-TSVTLEKFINLLEEHP 361 (447)
Q Consensus 287 Aivagl~a~EalK~ltg~~~~l~n~~~~~~~~~~~~---~~~~~~~~p~C~vC~~-~~~~~~~-~~~tl~~l~~~l~~~~ 361 (447)
|||||+++.|++|+|+|.....+..+.+-....... .....+|||+||||+. ...+.++ ..+|+..|++.+. +.
T Consensus 388 AiIagliv~eaiKvl~~~~~~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~~~l~ln~~~~~~~~L~D~iv-k~ 466 (603)
T KOG2013|consen 388 AIIAGLIVTEAIKVLGGDFDDCNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVPLVLELNTRKSTLRDLVDKIV-KT 466 (603)
T ss_pred hHHHHHHHHHHHHHhccchhcceeeEEccCCCccceeecccccCCCCCCCccccccceEEEeccccchHHHHHHHHH-HH
Confidence 999999999999999886544333333222121111 1233578999999998 7777777 5889999999997 45
Q ss_pred Ccceeeceeeecc-cEEEecCCCChhhhhccccCCchHHh-hcccccceeeeccccccccCCcceeEEEEEEEecc
Q 013224 362 KLQLAKASVTYRG-KNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGV 435 (447)
Q Consensus 362 ~~~~~~~~i~~~~-~~ly~~~~~~l~~~~~~~L~k~l~el-~~~g~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~ 435 (447)
++++ .|.|+.-. .++|. + .+.+||+|+|+|| +.+| ..+ .+.|.... -.+.++|.++
T Consensus 467 r~~~-~pdvsll~~~Li~~---~----d~e~n~~k~lsel~i~ng--sli------~~~~e~~d--~~~~~~~~~~ 524 (603)
T KOG2013|consen 467 RLGY-LPDVSLLDDDLIDD---M----DFEDNLDKTLSELGILNG--SLI------NVKDEILD--PVLEVHFTES 524 (603)
T ss_pred Hhcc-Ccccchhhhhhccc---c----cchhhhhhhHHhhCCCCC--ceE------eeecccCC--cceeeeeccc
Confidence 6888 66777543 34443 1 3567999999999 9999 677 77775443 3334666653
No 4
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.7e-71 Score=620.11 Aligned_cols=363 Identities=30% Similarity=0.457 Sum_probs=316.7
Q ss_pred cCCCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCccccCCCCCCCC
Q 013224 18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGF-----KNLEVIDMDRIEVSNLNRQFLFRMEDVG 92 (447)
Q Consensus 18 ~~~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gv-----g~i~lvD~D~Ve~sNL~RqfLf~~~diG 92 (447)
+..||+||+++||.++|++|+ +++|+||||||||||++|+||++|| |+|+|+|+|+||.|||||||||+.+|||
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~-~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIG 476 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQ-NLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIG 476 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHh-hCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcC
Confidence 567999999999999999999 9999999999999999999999999 8999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCceEEEEEeccCcc-----chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCC
Q 013224 93 KPKAEVAAKRVMERVSGVNIVPHFCRIED-----KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 167 (447)
Q Consensus 93 ~~Ka~~a~~~l~~~np~v~i~~~~~~i~~-----~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ 167 (447)
++||++|+++++++||+++|+++..++.+ ++.+|++++|+||+|+||+++|+++|++|+ .++
T Consensus 477 k~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~-------------~~~ 543 (1008)
T TIGR01408 477 KPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCL-------------AFL 543 (1008)
T ss_pred cHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHH-------------HcC
Confidence 99999999999999999999999999864 336899999999999999999999999995 789
Q ss_pred CcEEEeeeccccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhh------------------
Q 013224 168 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK------------------ 229 (447)
Q Consensus 168 ~pli~~g~~g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~------------------ 229 (447)
+|||++|+.|++|++++++|+.|+||+|.. .|+++++|+||++++|+.|+|||+||+.+.
T Consensus 544 iPli~~gt~G~~G~v~v~ip~~te~y~~~~--d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~~~~~~ 621 (1008)
T TIGR01408 544 KPLLESGTLGTKGNTQVVVPHLTESYGSSR--DPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSP 621 (1008)
T ss_pred CCEEEEeccCceeeEEEEeCCCcCCCCCCC--CCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHHHhhCh
Confidence 999999999999999999999999999995 478889999999999999999999999820
Q ss_pred ---------------------------------------hhh--------------------------------------
Q 013224 230 ---------------------------------------WDE-------------------------------------- 232 (447)
Q Consensus 230 ---------------------------------------~~~-------------------------------------- 232 (447)
|++
T Consensus 622 ~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P 701 (1008)
T TIGR01408 622 SSAEEVLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPP 701 (1008)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCC
Confidence 110
Q ss_pred -----------------------------------c--------------------------------------------
Q 013224 233 -----------------------------------V-------------------------------------------- 233 (447)
Q Consensus 233 -----------------------------------~-------------------------------------------- 233 (447)
.
T Consensus 702 ~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~ 781 (1008)
T TIGR01408 702 SPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNA 781 (1008)
T ss_pred CceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHH
Confidence 0
Q ss_pred -------------------cCCCCCCCCChh--HHHHHHHHHHHHHHHhCCCCCccccccccccccccccccHHHHHHHH
Q 013224 234 -------------------HSGKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAA 292 (447)
Q Consensus 234 -------------------~~~~~~d~dd~~--~l~~i~~~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl 292 (447)
..+.+|+|||+. ||+||+++||+||.+|+|++++++.+|.|+|+||||||||+|+|+|+
T Consensus 782 ~~~l~~~l~~~~~~~~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGL 861 (1008)
T TIGR01408 782 IFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGL 861 (1008)
T ss_pred HHHHHHHhhccccccCCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHH
Confidence 001358998876 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcceEEEEcCCCeeEeEeeeecCCCCccC-----C-C-ceeEecCCCCCHHHHHHHHhcCCCcce
Q 013224 293 CALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC-----G-P-GVLIELDTSVTLEKFINLLEEHPKLQL 365 (447)
Q Consensus 293 ~a~EalK~ltg~~~~l~n~~~~~~~~~~~~~~~~~~~~p~C~vC-----~-~-~~~~~~~~~~tl~~l~~~l~~~~~~~~ 365 (447)
++.|++|++.|.. ++..|.....+..+....+. +|.|-|..| . + |+++.++.++||++|++++. ++|++
T Consensus 862 v~lEl~Kv~~~~~-~i~~~kn~f~nlalp~~~~s-eP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~--~~~~~ 937 (1008)
T TIGR01408 862 VCLELIKVTDGGY-KFEVYKNCFLNLAIPLFVFT-EPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVK--EKYGL 937 (1008)
T ss_pred HHHHHHHHHhccc-cHHHHhHHHHhhcccccccc-CCCCCCceeecCceeccceEEEEecCCCcHHHHHHHHH--HHhCC
Confidence 9999999999863 23333222222233333333 455666677 2 4 88999988999999999995 46899
Q ss_pred eeceeeecccEEEecCCCChhhhhccccCCchHHhhccc
Q 013224 366 AKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKV 404 (447)
Q Consensus 366 ~~~~i~~~~~~ly~~~~~~l~~~~~~~L~k~l~el~~~g 404 (447)
++.||+.|.++||.++++ +.++||+++|+||++.-
T Consensus 938 ~v~~is~g~~~lY~~~~~----~~~erl~~~l~el~~~~ 972 (1008)
T TIGR01408 938 EPTMVSQGVKLLYVPVMP----GHAERLKLKMHKLVKPT 972 (1008)
T ss_pred eeEEEEcCceEEEeccch----hhHHhcCCCHHHHHHHh
Confidence 999999999999998753 35679999999997766
No 5
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=1.3e-70 Score=562.58 Aligned_cols=325 Identities=32% Similarity=0.489 Sum_probs=282.2
Q ss_pred eEEEEcCchHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 42 RILVVGAGGLGCELLKDLALSGF-----KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gv-----g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
||+||||||+|||++|+||++|| |+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCcc-----chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEEeCCCCC
Q 013224 117 CRIED-----KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 191 (447)
Q Consensus 117 ~~i~~-----~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~~p~~t~ 191 (447)
.++.+ ++.+|++++|+||+|+||+++|.++|++|+ .+++|+|++|+.|++|++++++|+.|+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~-------------~~~iPli~~gt~G~~G~v~v~iP~~te 147 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCV-------------YYRKPLLESGTLGTKGNTQVVIPHLTE 147 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------HhCCCEEEEecccceeEEEEEeCCCCC
Confidence 98864 346899999999999999999999999995 789999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhh---------------------hhhh------------------
Q 013224 192 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI---------------------KWDE------------------ 232 (447)
Q Consensus 192 c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~---------------------~~~~------------------ 232 (447)
||+|.. .|+++.+|.||++++|+.|+|||+||+.+ .|.+
T Consensus 148 ~y~~~~--~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~ll~~~ 225 (435)
T cd01490 148 SYSSSR--DPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYLFEDCVRWARLLFEKYFNNNIKQLLHNF 225 (435)
T ss_pred CccCCC--CCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999994 47788999999999999999999999996 3421
Q ss_pred -----------------ccC----------------------------CCCCCCCChh--HHHHHHHHHHHHHHHhCCCC
Q 013224 233 -----------------VHS----------------------------GKSFDPDDPE--HMQWVYSEAVKRAELFGIPG 265 (447)
Q Consensus 233 -----------------~~~----------------------------~~~~d~dd~~--~l~~i~~~a~~ra~~~~I~~ 265 (447)
+.| -..|||||+. ||+||++++|+||++|+|++
T Consensus 226 p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~ 305 (435)
T cd01490 226 PPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPGFEKDDDTNFHMDFITAASNLRARNYSIPP 305 (435)
T ss_pred ccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCchhHHHHHHHHhhhhHHHHcCCCc
Confidence 001 1248888864 99999999999999999999
Q ss_pred CccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEcCCCeeEeEeeeecCCCCccC--C---C-c
Q 013224 266 VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC--G---P-G 339 (447)
Q Consensus 266 ~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~~~~~~~~~~~~~~~~~~~~p~C~vC--~---~-~ 339 (447)
.+++.+++++|+||||||||||+|+|++++|++|++.++.+ +..|..-..+.......++.+..|.+..| + + |
T Consensus 306 ~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~-~~~~~n~~~nla~p~~~~~~p~~~~~~~~~~~~~~t~W 384 (435)
T cd01490 306 ADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRP-LEAYKNAFLNLALPFFAFSEPIPAPKVKYAYDEEWTIW 384 (435)
T ss_pred cCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCcc-HHHcchHhhhccCCccccccCCCCCccccCCCCEEeeE
Confidence 99999999999999999999999999999999999998742 32222111111222334444445556666 2 3 9
Q ss_pred eeEecCCCCCHHHHH-HHHhcCCCcceeeceeeecccEEEecCCCC
Q 013224 340 VLIELDTSVTLEKFI-NLLEEHPKLQLAKASVTYRGKNLYMQAPPV 384 (447)
Q Consensus 340 ~~~~~~~~~tl~~l~-~~l~~~~~~~~~~~~i~~~~~~ly~~~~~~ 384 (447)
+++.++.++|+++|+ +.+. ++|++++.||+.|+++||.+++|.
T Consensus 385 dr~~v~~~~t~~~~~~~~~~--~~~~~~v~~i~~g~~~ly~~~~~~ 428 (435)
T cd01490 385 DRFEVKGKQTLQELLIDYFK--EKYGLEVTMLSQGVSMLYSSFMPP 428 (435)
T ss_pred eEEEEcCCCcHHHHHHHHHH--HHhCCeEEEEEeCCeEEEeecCCc
Confidence 999999899999999 9995 568999999999999999999553
No 6
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=3.4e-69 Score=533.77 Aligned_cols=280 Identities=39% Similarity=0.688 Sum_probs=253.4
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
||+|||+||+|||++|+|+++|||+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|+++..++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred --chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEEeCCCCCccccccCC
Q 013224 122 --KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL 199 (447)
Q Consensus 122 --~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~~p~~t~c~~C~~~~ 199 (447)
++.+|++++|+||+|+||.++|+++|++|+ .+++|+|++|+.|+.|++++++|+.|+||+|...
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~-------------~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~- 146 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCL-------------AADVPLIESGTTGFLGQVQVIKKGKTECYECQPK- 146 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHH-------------HCCCCEEEEecCcceeEEEEEcCCCCCccCCCCC-
Confidence 457999999999999999999999999995 7899999999999999999999999999999965
Q ss_pred CCCCCCCCcccccCCcCChhhHHHHHHhh--------------------hhhhccCC-------CCCCCCChhHHHHHHH
Q 013224 200 FPPQVKFPLCTLAETPRTAAHCIEYAHLI--------------------KWDEVHSG-------KSFDPDDPEHMQWVYS 252 (447)
Q Consensus 200 ~p~~~~~p~ct~~~~p~~~~hci~~a~~~--------------------~~~~~~~~-------~~~d~dd~~~l~~i~~ 252 (447)
++++++|.||++++|+.|+|||+||+.+ .|..++++ .+|||||++|++||++
T Consensus 147 -~~~~~~pictI~~~p~~~~hci~~a~~~f~~~~~~f~~~i~~l~~~~~~w~~~~~p~p~~~~~~~fdkDd~~~~~~v~~ 225 (312)
T cd01489 147 -ETPKTFPVCTIRSTPSQPIHCIVWAKSLFFLFNKVFKDDIERLLSMEELWKTRKPPVPLSWKELTFDKDDQDALDFVAA 225 (312)
T ss_pred -CCCCcCCcceecCCCCCCEeehhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCcCcCCCCHHHHHHHHH
Confidence 5667899999999999999999999998 78765543 5699999999999999
Q ss_pred HHHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcceE-EE--EcCCCeeEeEeeeec
Q 013224 253 EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYL-TY--NGVAGLHIKVTEFVK 329 (447)
Q Consensus 253 ~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~~-~~--~~~~~~~~~~~~~~~ 329 (447)
+|++||++|+|++++++.+++++||||||||||||||||++++|++|+++++....++.+ .. .+...........++
T Consensus 226 ~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (312)
T cd01489 226 AANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQPNRRKRLLVPCKLDPP 305 (312)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhcccCCCCcEecCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999755444422 21 222223333344678
Q ss_pred CCCCccC
Q 013224 330 DKDCLVC 336 (447)
Q Consensus 330 ~p~C~vC 336 (447)
||+|.+|
T Consensus 306 n~~c~~c 312 (312)
T cd01489 306 NPNCYVC 312 (312)
T ss_pred CCCCCCC
Confidence 9999999
No 7
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-69 Score=565.04 Aligned_cols=374 Identities=31% Similarity=0.449 Sum_probs=320.2
Q ss_pred CccchhHHh---------------hccCCCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCC-----Ce
Q 013224 7 SRSRDLDKL---------------LLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGF-----KN 66 (447)
Q Consensus 7 ~~~~~~~~~---------------l~~~~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gv-----g~ 66 (447)
.||.|+|.+ ..|..|||.|+..+|...|+||. +.|+++||+|+||||++||+|++|+ |.
T Consensus 383 ~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~-~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ 461 (1013)
T KOG2012|consen 383 KQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLA-DQKVFLVGAGAIGCELLKNFALMGVGCGNSGK 461 (1013)
T ss_pred hHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHHh-hCcEEEEccchhhHHHHHhhhheeeccCCCCc
Confidence 478877766 44667999999999999999999 9999999999999999999999999 57
Q ss_pred EEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc-----chhhccCCceEEEcccCCHH
Q 013224 67 LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-----KDISFYNDFNIIVLGLDSIE 141 (447)
Q Consensus 67 i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~-----~~~~~~~~~DvVi~~~Dn~~ 141 (447)
|++.|+|.||.||||||||||..|||++|+++||++++.+||+++|+++..++.. ++++||+..|+|.+|+||++
T Consensus 462 ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVd 541 (1013)
T KOG2012|consen 462 ITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVD 541 (1013)
T ss_pred eEEeccchhhhccccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchh
Confidence 9999999999999999999999999999999999999999999999999999864 67999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhH
Q 013224 142 ARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHC 221 (447)
Q Consensus 142 ~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hc 221 (447)
||+++++.|+ -+.+|++++||.|++|++++++|+.|+.|..+ ..||++++|+||++++|..++||
T Consensus 542 AR~YvD~RCv-------------~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS--~DPPEksiP~CTlknFPn~IeHT 606 (1013)
T KOG2012|consen 542 ARRYVDRRCV-------------YYRKPLLESGTLGTKGNTQVVVPHLTESYGSS--RDPPEKSIPVCTLKSFPNAIEHT 606 (1013)
T ss_pred hhhhhhhhhh-------------hhccchhhccCcCCccceeEEecccccccccc--CCCcccCCceeeeccCchHHHHH
Confidence 9999999996 57999999999999999999999999999877 46999999999999999999999
Q ss_pred HHHHHhh--------------------------------------------------------hhhh-------------
Q 013224 222 IEYAHLI--------------------------------------------------------KWDE------------- 232 (447)
Q Consensus 222 i~~a~~~--------------------------------------------------------~~~~------------- 232 (447)
|+||+.. .|.+
T Consensus 607 iqWAR~eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~~rp~~~~dCv~warl~f~~~f~~~ikq 686 (1013)
T KOG2012|consen 607 IQWARDEFEGLFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLSERPQNWQDCVEWARLHFEKYFHNRIKQ 686 (1013)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999991 1111
Q ss_pred --------------------cc----------------------------------------------------------
Q 013224 233 --------------------VH---------------------------------------------------------- 234 (447)
Q Consensus 233 --------------------~~---------------------------------------------------------- 234 (447)
++
T Consensus 687 Ll~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~ 766 (1013)
T KOG2012|consen 687 LLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQK 766 (1013)
T ss_pred hhcCCCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccC
Confidence 00
Q ss_pred -----------------------------------------CCCCCCCCCh--hHHHHHHHHHHHHHHHhCCCCCccccc
Q 013224 235 -----------------------------------------SGKSFDPDDP--EHMQWVYSEAVKRAELFGIPGVTYSLT 271 (447)
Q Consensus 235 -----------------------------------------~~~~~d~dd~--~~l~~i~~~a~~ra~~~~I~~~~~~~~ 271 (447)
.+..|+|||+ .||+||++++|+||++|.|+++++..+
T Consensus 767 ~~i~~~~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~ 846 (1013)
T KOG2012|consen 767 VKIVVEEAELAASSASVDDSAAIDQLNKALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKT 846 (1013)
T ss_pred CeecccccccccccccCCchHHHHHHhhcccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhh
Confidence 0246778765 799999999999999999999999999
Q ss_pred cccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEcCCCeeEeEeeeecCCCCcc------CCC-ceeEec
Q 013224 272 QGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLV------CGP-GVLIEL 344 (447)
Q Consensus 272 ~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~~~~~~~~~~~~~~~~~~~~p~C~v------C~~-~~~~~~ 344 (447)
++|+|.||||||||+|+++|++++|++|++.|.. ++..|-+-..+..+....+. ++-+.|.+ -.+ |+++.+
T Consensus 847 K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~~-~~e~~Kn~flnLAlp~f~~~-ep~~~pk~~~~~~~~~tlWdR~~v 924 (1013)
T KOG2012|consen 847 KRIAGKIIPAIATTTAAVSGLVCLELYKVVDGKR-PVEAYKNTFLNLALPFFSFA-EPLAAPKVQYHNDLSWTLWDRWEV 924 (1013)
T ss_pred heeeeeEEEEEeehhHHHHHHHHhhhhhhccCCC-chHHhhhhhhcccccceeec-ccCCCcceeeecccceeeeEEEEe
Confidence 9999999999999999999999999999999953 33322211111111111111 11111111 123 999999
Q ss_pred CCCCCHHHHHHHHhcCCCcceeeceeeecccEEEecCCCChhhhhccccCCchHHhhccc
Q 013224 345 DTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKV 404 (447)
Q Consensus 345 ~~~~tl~~l~~~l~~~~~~~~~~~~i~~~~~~ly~~~~~~l~~~~~~~L~k~l~el~~~g 404 (447)
..+.||++|++++. +++++++.||+.|..+||.+++| ++.+||++++.||++.-
T Consensus 925 ~g~~tL~~~L~~~~--~~~gl~i~mls~G~~lly~~~~~----k~~erl~~~v~elv~~~ 978 (1013)
T KOG2012|consen 925 KGEPTLREFLDHLE--EQHGLEITMLSQGVSLLYASFMP----KHAERLPLRVTELVRDV 978 (1013)
T ss_pred cCCCCHHHHHHHHh--hhcCceEEEEeccceeehhhhhh----HHHHhcCCcHHHHHHHH
Confidence 99999999999995 46899999999999999998866 67889999999997765
No 8
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=2.1e-67 Score=502.98 Aligned_cols=231 Identities=53% Similarity=1.006 Sum_probs=222.7
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCc-
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE- 120 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~- 120 (447)
||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||+|||||+++|+|++||++++++++++||+++|+++..++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred --cchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEEeCCCCCccccccC
Q 013224 121 --DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198 (447)
Q Consensus 121 --~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~~p~~t~c~~C~~~ 198 (447)
+++.+|+++||+||+|+||+++|+++|++|+ ..++|+|++|+.|++|++++++|+.|+||+|.+
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~-------------~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~- 146 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLI-------------FLIVPLIESGTEGFKGNAQVILPGMTECIECTL- 146 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEcccCCceEEEEEcCCCCCCcccCC-
Confidence 4567899999999999999999999999995 679999999999999999999999999999997
Q ss_pred CCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCcccccccccccc
Q 013224 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNI 278 (447)
Q Consensus 199 ~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~gv~~~i 278 (447)
.|+++++|.||++++|+.|+|||+||+.++| ||++|++||++.|++||++|+|++++++++++|++||
T Consensus 147 -~~~~~~~p~Cti~~~P~~~~hci~~a~~~~~-----------d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~i 214 (234)
T cd01484 147 -YPPQKNFPMCTIASMPRLPEHCIEWARMLQW-----------DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRI 214 (234)
T ss_pred -CCCCCCCCccccCCCCCCchHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCe
Confidence 4778899999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHH
Q 013224 279 IPAIASTNAIISAACALETL 298 (447)
Q Consensus 279 iPaia~t~Aivagl~a~Eal 298 (447)
||||+||||||||+++.|++
T Consensus 215 ipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 215 IPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred ecchhhHHHHHHHHHHHhhC
Confidence 99999999999999999974
No 9
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=7e-49 Score=378.04 Aligned_cols=233 Identities=26% Similarity=0.471 Sum_probs=205.1
Q ss_pred CCCCCCCccC--CHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHH
Q 013224 20 GNLVGPTFEP--GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (447)
Q Consensus 20 ~~~~r~~~~~--G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~ 97 (447)
.||+||+.+| |.++|++|+ +++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.|||+||+||+++|||++||+
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~-~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALK-ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred cceeeeeecccCCHHHHHHHh-CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 5899999997 589999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 98 ~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++++|+++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|++|+ ++++|+|++++.
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~-------------~~~ip~v~~~~~ 148 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCF-------------AAKVPLVSGAAI 148 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHH-------------HcCCCEEEEEec
Confidence 99999999999999999999987643 5789999999999999999999999995 789999999999
Q ss_pred cccceEEEEe-CCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHH
Q 013224 177 GFKGHARVII-PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV 255 (447)
Q Consensus 177 g~~G~v~~~~-p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~ 255 (447)
|+.|++.++. +..++||+|..+.++... +.|.
T Consensus 149 g~~G~v~~~~~~~~~~c~~C~~~~~~~~~--~~~~--------------------------------------------- 181 (240)
T TIGR02355 149 RMEGQVSVFTYQDGEPCYRCLSRLFGENA--LSCV--------------------------------------------- 181 (240)
T ss_pred ccEeEEEEEecCCCCCccccccccCCCCC--CCcc---------------------------------------------
Confidence 9999998765 446899999965443210 0010
Q ss_pred HHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEeeeecCCCCc
Q 013224 256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFVKDKDCL 334 (447)
Q Consensus 256 ~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~~~~~p~C~ 334 (447)
..+.++|+++++|+++|+|++|+|+|.++++. .++.||..+..+ ..++++++|+|+
T Consensus 182 ----------------------~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~-~~~~~~~~~~C~ 238 (240)
T TIGR02355 182 ----------------------EAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSF-REMKLPKNPTCP 238 (240)
T ss_pred ----------------------ccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEE-EEEeccCCccCC
Confidence 01457889999999999999999999877774 577788887766 478899999999
Q ss_pred cC
Q 013224 335 VC 336 (447)
Q Consensus 335 vC 336 (447)
+|
T Consensus 239 ~C 240 (240)
T TIGR02355 239 VC 240 (240)
T ss_pred CC
Confidence 99
No 10
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=4.7e-49 Score=404.22 Aligned_cols=237 Identities=28% Similarity=0.371 Sum_probs=212.0
Q ss_pred CCCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHH
Q 013224 20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (447)
Q Consensus 20 ~~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~ 97 (447)
.+|+||+++ ||.++|++|+ +++|+||||||+||+++++|+++|||+|+|+|+|+||.|||+|||||+++|||++||+
T Consensus 17 ~ry~Rq~~l~~~g~~~q~~L~-~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~ 95 (390)
T PRK07411 17 ERYSRHLILPEVGLEGQKRLK-AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIE 95 (390)
T ss_pred HHhhceechhhcCHHHHHHHh-cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHH
Confidence 489999999 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 98 ~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++++|+++||.++|+++..++++.+ .++++++|+||+|+||+++|.++|++|+ ..++|+|++++.
T Consensus 96 ~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~-------------~~~~p~v~~~~~ 162 (390)
T PRK07411 96 SAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACV-------------LLNKPNVYGSIF 162 (390)
T ss_pred HHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEEEc
Confidence 99999999999999999999998644 6889999999999999999999999995 789999999999
Q ss_pred cccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHHH
Q 013224 177 GFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVK 256 (447)
Q Consensus 177 g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~~ 256 (447)
|+.||+.++.|+.++||+|.++..|+....+.|.
T Consensus 163 g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~---------------------------------------------- 196 (390)
T PRK07411 163 RFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCA---------------------------------------------- 196 (390)
T ss_pred cCEEEEEEECCCCCCChHHhcCCCCCcccCCCCc----------------------------------------------
Confidence 9999999988888999999986544433344442
Q ss_pred HHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEeeeecCCCCcc
Q 013224 257 RAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFVKDKDCLV 335 (447)
Q Consensus 257 ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~~~~~p~C~v 335 (447)
..|| ++|+++++|+++|+|++|+|+|.++++. .++.||...+.+. .+++.++|+|++
T Consensus 197 --------------~~gv-------lg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~-~~~~~~~~~c~~ 254 (390)
T PRK07411 197 --------------EGGV-------LGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFR-ELKLRPNPERPV 254 (390)
T ss_pred --------------cCCc-------CcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCcee-EEeccCCCCCCc
Confidence 1233 5678899999999999999999877765 5678898887665 788899999999
Q ss_pred CCC
Q 013224 336 CGP 338 (447)
Q Consensus 336 C~~ 338 (447)
|..
T Consensus 255 i~~ 257 (390)
T PRK07411 255 IEK 257 (390)
T ss_pred ccc
Confidence 764
No 11
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=3.3e-48 Score=374.78 Aligned_cols=230 Identities=26% Similarity=0.452 Sum_probs=204.1
Q ss_pred CCCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHH
Q 013224 20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (447)
Q Consensus 20 ~~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~ 97 (447)
.||+||+.+ ||.++|++|+ +++|+|||+||+||+++++|+++|||+|+|+|+|.|+.|||+|||||+++|||++||+
T Consensus 11 ~rY~Rqi~l~~~g~~~Q~~L~-~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~ 89 (245)
T PRK05690 11 LRYNRQIILRGFDFDGQEKLK-AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVE 89 (245)
T ss_pred HHHHHhccchhcCHHHHHHhc-CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHH
Confidence 589999876 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 98 ~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++++|+++||+++|+++...+++.+ .++++++|+||+|+||+++|.++|++|+ ++++|+|++++.
T Consensus 90 ~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~-------------~~~ip~v~~~~~ 156 (245)
T PRK05690 90 SARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACF-------------AAKKPLVSGAAI 156 (245)
T ss_pred HHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHH-------------HhCCEEEEeeec
Confidence 99999999999999999999988654 5789999999999999999999999995 789999999999
Q ss_pred cccceEEEEeCCC-CCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHH
Q 013224 177 GFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV 255 (447)
Q Consensus 177 g~~G~v~~~~p~~-t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~ 255 (447)
|+.|++.++.|+. ++||+|.++..++.. ..|.
T Consensus 157 g~~G~v~~~~~~~~~~c~~c~~~~~~~~~--~~~~--------------------------------------------- 189 (245)
T PRK05690 157 RMEGQVTVFTYQDDEPCYRCLSRLFGENA--LTCV--------------------------------------------- 189 (245)
T ss_pred cCCceEEEEecCCCCceeeeccCCCCCCC--CCcc---------------------------------------------
Confidence 9999999998875 899999975433211 0110
Q ss_pred HHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEeeeecCCCC
Q 013224 256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFVKDKDC 333 (447)
Q Consensus 256 ~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~~~~~p~C 333 (447)
.. +.++|+++++|+++|+|++|+|+|.++++. .++.||..+..+ ..+++.++|+|
T Consensus 190 ---------------~~-------gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~-~~~~~~~~~~C 245 (245)
T PRK05690 190 ---------------EA-------GVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQF-REMKLKRDPGC 245 (245)
T ss_pred ---------------cC-------CccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEE-EEEEcCCCcCC
Confidence 01 457889999999999999999999887775 567788887766 47889999988
No 12
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.5e-48 Score=393.40 Aligned_cols=237 Identities=25% Similarity=0.358 Sum_probs=211.0
Q ss_pred CCCCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHH
Q 013224 19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA 96 (447)
Q Consensus 19 ~~~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka 96 (447)
..+|+||+++ ||.++|++|+ +++|+|||+||+||+++++|+++|||+|+|+|+|+|+.|||+|||||+++|+|++||
T Consensus 6 ~~rY~Rq~~l~~~g~~~q~~L~-~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka 84 (355)
T PRK05597 6 IARYRRQIMLGEIGQQGQQSLF-DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKA 84 (355)
T ss_pred HhHhhheechhhcCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHH
Confidence 3589999999 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 97 EVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 97 ~~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
++++++|+++||.++|+++..+++..+ .++++++|+||+|+||+++|.++|++|+ ++++|+|.+++
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~-------------~~~ip~v~~~~ 151 (355)
T PRK05597 85 ESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAA-------------RLGIPHVWASI 151 (355)
T ss_pred HHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEEE
Confidence 999999999999999999999988644 6889999999999999999999999995 78999999999
Q ss_pred ccccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHH
Q 013224 176 EGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV 255 (447)
Q Consensus 176 ~g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~ 255 (447)
.|+.|++.++.|+.++||+|.++..|+....+.|.
T Consensus 152 ~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~--------------------------------------------- 186 (355)
T PRK05597 152 LGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCS--------------------------------------------- 186 (355)
T ss_pred ecCeEEEEEEcCCCCCCHHHhCCCCCCccCCCCcc---------------------------------------------
Confidence 99999999998999999999987554444444442
Q ss_pred HHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEeeeecCCCCc
Q 013224 256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFVKDKDCL 334 (447)
Q Consensus 256 ~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~~~~~p~C~ 334 (447)
.. +.++|+++++|+++|+|++|+|+|.++++. .++.||..++.+. .+++.++|+|.
T Consensus 187 ---------------~~-------gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~-~~~~~~~~~~~ 243 (355)
T PRK05597 187 ---------------QA-------GVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWE-YIPVVGNPAVL 243 (355)
T ss_pred ---------------cc-------CcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEE-EEeccCCCCCc
Confidence 11 346789999999999999999999877765 5778898877665 78888999985
Q ss_pred cCC
Q 013224 335 VCG 337 (447)
Q Consensus 335 vC~ 337 (447)
.+.
T Consensus 244 ~~~ 246 (355)
T PRK05597 244 ERV 246 (355)
T ss_pred ccc
Confidence 433
No 13
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.6e-47 Score=389.58 Aligned_cols=256 Identities=27% Similarity=0.379 Sum_probs=222.5
Q ss_pred CCCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHH
Q 013224 20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (447)
Q Consensus 20 ~~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~ 97 (447)
.||+||+++ ||.++|++|+ +++|+|||+||+||+++++|+++|||+|+|+|.|.|++|||+|||||+++|||++||+
T Consensus 20 ~ry~Rqi~l~~~g~~~q~~l~-~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 98 (370)
T PRK05600 20 RRTARQLALPGFGIEQQERLH-NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVE 98 (370)
T ss_pred HHhhcccchhhhCHHHHHHhc-CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHH
Confidence 589999999 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 98 ~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++++++++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|++|+ .+++|+|++++.
T Consensus 99 ~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~-------------~~~iP~v~~~~~ 165 (370)
T PRK05600 99 VAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE-------------ITGTPLVWGTVL 165 (370)
T ss_pred HHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEEEe
Confidence 99999999999999999999998644 5789999999999999999999999995 789999999999
Q ss_pred cccceEEEEeCC---CCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHH
Q 013224 177 GFKGHARVIIPG---VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE 253 (447)
Q Consensus 177 g~~G~v~~~~p~---~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~ 253 (447)
|+.|++.++.|+ .++||+|.++..|+....+.|.
T Consensus 166 g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~------------------------------------------- 202 (370)
T PRK05600 166 RFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCA------------------------------------------- 202 (370)
T ss_pred cCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCCc-------------------------------------------
Confidence 999999998875 3789999986544333333332
Q ss_pred HHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEeeeecCCC
Q 013224 254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFVKDKD 332 (447)
Q Consensus 254 a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~~~~~p~ 332 (447)
.. +.++|+.+++|+++|+|++|+|+|.++++. ..+.||+..+.+. .+++.++|+
T Consensus 203 -----------------~~-------gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~-~~~~~~~~~ 257 (370)
T PRK05600 203 -----------------TA-------GVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTR-SFRVGADPA 257 (370)
T ss_pred -----------------cC-------CcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEE-EEEecCCCC
Confidence 11 457889999999999999999999877765 5788999888774 889999999
Q ss_pred CccCCC-ceeEecCCCCCHHHHHHHHh
Q 013224 333 CLVCGP-GVLIELDTSVTLEKFINLLE 358 (447)
Q Consensus 333 C~vC~~-~~~~~~~~~~tl~~l~~~l~ 358 (447)
|++|.. ...+. ...+|..++.+.+.
T Consensus 258 c~~~~~~~~~~~-~~~~~~~el~~~l~ 283 (370)
T PRK05600 258 RPLVTRLRPSYE-AARTDTTSLIDATL 283 (370)
T ss_pred CCccccccCcch-hcccCHHHHHHHHh
Confidence 999986 22222 12568888888774
No 14
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=9.3e-48 Score=387.19 Aligned_cols=235 Identities=29% Similarity=0.414 Sum_probs=204.9
Q ss_pred CCCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCC--ChH
Q 013224 20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG--KPK 95 (447)
Q Consensus 20 ~~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG--~~K 95 (447)
.||+||+.+ ||.++|++|+ +++|+|||+||+||++|++|+++|||+|+|||.|.||.|||+||+||+++|+| ++|
T Consensus 3 ~rY~Rq~~~~~~G~~~Q~~L~-~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 3 ERYSRQILFSGIGEEGQRKIR-EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred chhhhhhchhhcCHHHHHhhc-CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 589999886 8999999999 99999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHhhCCceEEEEEeccCccc-hhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 96 AEVAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 96 a~~a~~~l~~~np~v~i~~~~~~i~~~-~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
|++++++|+++||+++|+++..++... ..++++++|+||+|+||+++|.++|++|+ ++++|+|+++
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~-------------~~~ip~i~~~ 148 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQ-------------KYNIPWIYGG 148 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH-------------HcCCCEEEEE
Confidence 999999999999999999999888743 36788999999999999999999999995 7899999999
Q ss_pred eccccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHH
Q 013224 175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 254 (447)
Q Consensus 175 ~~g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a 254 (447)
+.|+.|++.++.|+.|+||+|+++..|... +.|.
T Consensus 149 ~~g~~G~~~~~~P~~tpC~~Cl~~~~p~~~--~~c~-------------------------------------------- 182 (338)
T PRK12475 149 CVGSYGVTYTIIPGKTPCLRCLMEHVPVGG--ATCD-------------------------------------------- 182 (338)
T ss_pred ecccEEEEEEECCCCCCCHHHhcCCCCCCC--CCCc--------------------------------------------
Confidence 999999999999999999999976433211 1121
Q ss_pred HHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEeeee--cCC
Q 013224 255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFV--KDK 331 (447)
Q Consensus 255 ~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~~~--~~p 331 (447)
+. +.++|+++++|++++.|++|+|+|..+++. ..+.||..+..+. .+.+. ++|
T Consensus 183 ----------------~~-------Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~-~~~~~~~k~p 238 (338)
T PRK12475 183 ----------------TA-------GIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNM-SIKVNKQKKD 238 (338)
T ss_pred ----------------cC-------CcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEE-EEEeccCCCC
Confidence 12 335678899999999999999999877775 4567887776554 56664 499
Q ss_pred CCccCCC
Q 013224 332 DCLVCGP 338 (447)
Q Consensus 332 ~C~vC~~ 338 (447)
+||+|+.
T Consensus 239 ~Cp~Cg~ 245 (338)
T PRK12475 239 TCPSCGL 245 (338)
T ss_pred CCCcCCC
Confidence 9999996
No 15
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=1.7e-47 Score=372.94 Aligned_cols=237 Identities=22% Similarity=0.240 Sum_probs=202.2
Q ss_pred CCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHH
Q 013224 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (447)
Q Consensus 20 ~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a 99 (447)
++|+||+.++|.++|++|+ +++|+||||||+||+++++|+++|||+|+|+|+|.||.||||||++|+.+|||++||+++
T Consensus 8 ~~ysRq~~~iG~e~Q~kL~-~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a 86 (287)
T PRK08223 8 EAFCRNLGWITPTEQQRLR-NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVL 86 (287)
T ss_pred HHHhhhhhhcCHHHHHHHh-cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHH
Confidence 5788999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCH--HHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 100 AKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 100 ~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~--~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++++++||.++|+++...+++.+ .++++++|+||||+||+ ++|.++|++|+ .+++|+|++++.
T Consensus 87 ~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~-------------~~~iP~V~~~~~ 153 (287)
T PRK08223 87 AEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQ-------------QRGIPALTAAPL 153 (287)
T ss_pred HHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH-------------HcCCCEEEEecc
Confidence 999999999999999999998755 68999999999999985 89999999995 789999999999
Q ss_pred cccceEEEEeCCCCCccccccCC---CCCC--------CCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChh
Q 013224 177 GFKGHARVIIPGVTPCFECTIWL---FPPQ--------VKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPE 245 (447)
Q Consensus 177 g~~G~v~~~~p~~t~c~~C~~~~---~p~~--------~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~ 245 (447)
|+.|++.++.|+ ++||+|.++. .|+. ...|.|.-+...-.+ ++ +|
T Consensus 154 g~~gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~--~~----------------~~----- 209 (287)
T PRK08223 154 GMGTALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADP--SR----------------VD----- 209 (287)
T ss_pred CCeEEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccc--cc----------------cc-----
Confidence 999999999886 8999999876 3321 344555433221000 00 00
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCC--cceEEEEcCCCeeE
Q 013224 246 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL--SNYLTYNGVAGLHI 322 (447)
Q Consensus 246 ~l~~i~~~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l--~n~~~~~~~~~~~~ 322 (447)
.+ ..-.|.+.+++.++|+++|.|++|+|+|.++++ ..+++||+..+.+.
T Consensus 210 -------------------------~~---~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~~~~~~~~~~d~~~~~~~ 260 (287)
T PRK08223 210 -------------------------LE---NRTGPSTGLACQLCAGVVATEVLKILLGRGRVYAAPWFHQFDAYRSRYV 260 (287)
T ss_pred -------------------------cc---cccCCCccchHHHHHHHHHHHHHHHHhCCCCcCCCCeEEEEEcCCceEE
Confidence 00 112388899999999999999999999998875 47889998877554
No 16
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=9.5e-47 Score=387.80 Aligned_cols=234 Identities=26% Similarity=0.399 Sum_probs=206.7
Q ss_pred CCCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHH
Q 013224 20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (447)
Q Consensus 20 ~~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~ 97 (447)
.||+||+++ ||.++|++|+ +++|+|||+||+||++|++|+++|||+|+|+|+|.|+.|||+|||||+++|||++||+
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~-~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~ 99 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLK-NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQ 99 (392)
T ss_pred HHhhheechhhcCHHHHHHHh-cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHH
Confidence 589999988 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 98 ~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++++|+++||+++|+++..+++..+ .++++++|+||+|+||+.+|.++|++|+ .+++|||++++.
T Consensus 100 ~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~-------------~~~~p~v~~~~~ 166 (392)
T PRK07878 100 SARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAV-------------LAGKPYVWGSIY 166 (392)
T ss_pred HHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEEec
Confidence 99999999999999999999988644 6789999999999999999999999995 789999999999
Q ss_pred cccceEEEEeC----CCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHH
Q 013224 177 GFKGHARVIIP----GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYS 252 (447)
Q Consensus 177 g~~G~v~~~~p----~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~ 252 (447)
|+.|+++++.+ +.++||+|.++..++....+.|.
T Consensus 167 g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~------------------------------------------ 204 (392)
T PRK07878 167 RFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCA------------------------------------------ 204 (392)
T ss_pred cCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCc------------------------------------------
Confidence 99999998874 37899999976433322233331
Q ss_pred HHHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCC-cceEEEEcCCCeeEeEeeeecCC
Q 013224 253 EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-SNYLTYNGVAGLHIKVTEFVKDK 331 (447)
Q Consensus 253 ~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l-~n~~~~~~~~~~~~~~~~~~~~p 331 (447)
.. +.++|+++++|+++|+|++|+|+|.++++ ..++.||.....+. .+++.++|
T Consensus 205 ------------------~~-------gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~-~~~~~~~~ 258 (392)
T PRK07878 205 ------------------EG-------GVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYR-TIKIRKDP 258 (392)
T ss_pred ------------------cC-------CccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCcee-eEeeccCC
Confidence 11 33678899999999999999999987776 46778998887665 68899999
Q ss_pred CCcc
Q 013224 332 DCLV 335 (447)
Q Consensus 332 ~C~v 335 (447)
+|+.
T Consensus 259 ~C~~ 262 (392)
T PRK07878 259 STPK 262 (392)
T ss_pred CCCc
Confidence 9973
No 17
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.5e-46 Score=378.57 Aligned_cols=235 Identities=27% Similarity=0.397 Sum_probs=205.6
Q ss_pred CCCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCC--CChH
Q 013224 20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV--GKPK 95 (447)
Q Consensus 20 ~~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~di--G~~K 95 (447)
.||+||+.+ ||.++|++|+ +++|+|||+||+||++|++|+++|||+|+|||.|.|+.|||+||+||+++|+ |++|
T Consensus 3 ~rY~Rq~~l~~~G~~~Q~~L~-~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 3 ERYSRQELFSPIGEEGQQKLR-EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred chhhhhhchhhcCHHHHHHhc-CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 589999977 9999999999 9999999999999999999999999999999999999999999999999999 4699
Q ss_pred HHHHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 96 AEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 96 a~~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
|++++++++++||.++|+++..++.+.+ .++++++|+||+|+||+++|.++|++|+ +.++|+|+++
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~-------------~~~iP~i~~~ 148 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQ-------------KYGIPWIYGA 148 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH-------------HhCCCEEEEe
Confidence 9999999999999999999999887654 5789999999999999999999999995 7799999999
Q ss_pred eccccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHH
Q 013224 175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 254 (447)
Q Consensus 175 ~~g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a 254 (447)
+.|+.|++.++.|+.++||+|+++..|+.. +.|.
T Consensus 149 ~~g~~G~~~~~~p~~~pC~~Cl~~~~~~~~--~~c~-------------------------------------------- 182 (339)
T PRK07688 149 CVGSYGLSYTIIPGKTPCLRCLLQSIPLGG--ATCD-------------------------------------------- 182 (339)
T ss_pred eeeeeeEEEEECCCCCCCeEeecCCCCCCC--CCCc--------------------------------------------
Confidence 999999999999999999999986543221 2221
Q ss_pred HHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEee--eecCC
Q 013224 255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTE--FVKDK 331 (447)
Q Consensus 255 ~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~--~~~~p 331 (447)
.. +.++|+++++|+++|+|++|+|+|..+++. ..+.||..+..+. .++ ..++|
T Consensus 183 ----------------~~-------gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~-~~~~~~~~~~ 238 (339)
T PRK07688 183 ----------------TA-------GIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYS-CMNVQKLKKD 238 (339)
T ss_pred ----------------cC-------CcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEE-EEEecCCCCC
Confidence 11 336778899999999999999999877765 4567888776554 444 34679
Q ss_pred CCccCCC
Q 013224 332 DCLVCGP 338 (447)
Q Consensus 332 ~C~vC~~ 338 (447)
+||+|+.
T Consensus 239 ~Cp~Cg~ 245 (339)
T PRK07688 239 NCPSCGE 245 (339)
T ss_pred CCCCCCC
Confidence 9999996
No 18
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=3.7e-46 Score=357.23 Aligned_cols=220 Identities=33% Similarity=0.511 Sum_probs=195.5
Q ss_pred CCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHH
Q 013224 21 NLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (447)
Q Consensus 21 ~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~ 98 (447)
||+||+++ ||.++|++|+ +++|+|||+||+||++|++|+++|||+|+|+|+|.|+.+||+|||||+++|+|++||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~-~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~ 79 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLK-NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEA 79 (228)
T ss_pred CcceeechhhcCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHH
Confidence 69999999 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeecc
Q 013224 99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (447)
Q Consensus 99 a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g 177 (447)
++++++++||+++|+.+...+...+ .++++++|+||+|+|++++|.++|++|. ++++|+|++|+.|
T Consensus 80 ~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~-------------~~~ip~i~~g~~g 146 (228)
T cd00757 80 AAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACV-------------KLGKPLVSGAVLG 146 (228)
T ss_pred HHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHH-------------HcCCCEEEEEecc
Confidence 9999999999999999998886433 5788999999999999999999999995 7899999999999
Q ss_pred ccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHHHH
Q 013224 178 FKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKR 257 (447)
Q Consensus 178 ~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~~r 257 (447)
+.|++.++.|+.++||.|.+...+... .+.|
T Consensus 147 ~~g~v~~~~p~~~~c~~c~~~~~~~~~-~~~~------------------------------------------------ 177 (228)
T cd00757 147 FEGQVTVFIPGEGPCYRCLFPEPPPPG-VPSC------------------------------------------------ 177 (228)
T ss_pred CEEEEEEECCCCCCCccccCCCCCCCC-CCcc------------------------------------------------
Confidence 999999999999999999975432110 0101
Q ss_pred HHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCC-cceEEEEcCCCeeE
Q 013224 258 AELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-SNYLTYNGVAGLHI 322 (447)
Q Consensus 258 a~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l-~n~~~~~~~~~~~~ 322 (447)
...|+++|+++++|+++++|++|+|+|..+++ .+++.||..+..+.
T Consensus 178 -------------------~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~ 224 (228)
T cd00757 178 -------------------AEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFR 224 (228)
T ss_pred -------------------ccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEE
Confidence 01277899999999999999999999987665 57788888776554
No 19
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=8.3e-46 Score=379.44 Aligned_cols=237 Identities=29% Similarity=0.454 Sum_probs=209.6
Q ss_pred CCCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHH
Q 013224 20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (447)
Q Consensus 20 ~~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~ 97 (447)
.+|+||+++ ||.++|++|+ +++|+|+|+||+|++++++|+++||++|+|+|+|.|+.|||+||+||+++|||++||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~-~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~ 192 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLL-EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVD 192 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHh-cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHH
Confidence 469999988 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 98 ~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++++++++||.++|+++...+.+.+ .++++++|+||+|+||+++|.++|++|+ ++++|+|++++.
T Consensus 193 ~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~-------------~~~ip~i~~~~~ 259 (376)
T PRK08762 193 SAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACV-------------KLGKPLVYGAVF 259 (376)
T ss_pred HHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEEec
Confidence 99999999999999999998887644 5688999999999999999999999995 789999999999
Q ss_pred cccceEEEEeCCC----CCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHH
Q 013224 177 GFKGHARVIIPGV----TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYS 252 (447)
Q Consensus 177 g~~G~v~~~~p~~----t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~ 252 (447)
|+.|++.++.|+. ++||+|.++..+.....|.|.
T Consensus 260 g~~g~v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~------------------------------------------ 297 (376)
T PRK08762 260 RFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCA------------------------------------------ 297 (376)
T ss_pred cCEEEEEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCc------------------------------------------
Confidence 9999999998876 899999975433322223332
Q ss_pred HHHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEeeeecCC
Q 013224 253 EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFVKDK 331 (447)
Q Consensus 253 ~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~~~~~p 331 (447)
.. +.++|+++++|+++|+|++|+|+|.++++. .++.||..+..+. .+.+.++|
T Consensus 298 ------------------~~-------gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~-~~~~~~~~ 351 (376)
T PRK08762 298 ------------------EA-------GVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFR-ELRLPPDP 351 (376)
T ss_pred ------------------cC-------CcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEE-EEeccCCC
Confidence 12 336788899999999999999999877764 6778898887654 78899999
Q ss_pred CCccCCC
Q 013224 332 DCLVCGP 338 (447)
Q Consensus 332 ~C~vC~~ 338 (447)
+|++|+.
T Consensus 352 ~C~~C~~ 358 (376)
T PRK08762 352 HCPVCAP 358 (376)
T ss_pred CCCCCCC
Confidence 9999986
No 20
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=4.5e-46 Score=350.16 Aligned_cols=165 Identities=31% Similarity=0.500 Sum_probs=157.5
Q ss_pred CCCCCCcc--CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHH
Q 013224 21 NLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (447)
Q Consensus 21 ~~~r~~~~--~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~ 98 (447)
||+||+++ ||.++|++|+ +++|+|||+||+|++++++|+++|+++|+|+|+|.|+.+||+|||||+++|+|++||++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~-~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~ 79 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLL-NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEV 79 (202)
T ss_pred CCcceecchhcCHHHHHHhc-CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHH
Confidence 69999998 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeecc
Q 013224 99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (447)
Q Consensus 99 a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g 177 (447)
++++++++||+++++++...+.+.+ .++++++|+||+|+||.++|.++|++|+ ++++|+|++++.|
T Consensus 80 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~-------------~~~ip~i~~~~~g 146 (202)
T TIGR02356 80 AAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACV-------------ALGTPLISAAVVG 146 (202)
T ss_pred HHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEEecc
Confidence 9999999999999999999887644 5789999999999999999999999995 7899999999999
Q ss_pred ccceEEEEeCC-CCCccccccCC
Q 013224 178 FKGHARVIIPG-VTPCFECTIWL 199 (447)
Q Consensus 178 ~~G~v~~~~p~-~t~c~~C~~~~ 199 (447)
+.|++.++.|+ .++||+|.++.
T Consensus 147 ~~G~~~~~~p~~~~~c~~c~~~~ 169 (202)
T TIGR02356 147 FGGQLMVFDPGGEGPCLRCLFPD 169 (202)
T ss_pred CeEEEEEEeCCCCCCChhhcCCC
Confidence 99999999998 79999999753
No 21
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=9.6e-46 Score=354.70 Aligned_cols=217 Identities=28% Similarity=0.375 Sum_probs=193.4
Q ss_pred CCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCC-hHHHH
Q 013224 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGK-PKAEV 98 (447)
Q Consensus 20 ~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~-~Ka~~ 98 (447)
.+|+||+++||.++|++|+ +++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.|||+||++|+++|+|+ +|+++
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~-~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~ 86 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLK-KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLS 86 (231)
T ss_pred HHHhhHHHhcCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHH
Confidence 4799999999999999999 999999999999999999999999999999999999999999999999999999 59999
Q ss_pred HHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeecc
Q 013224 99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (447)
Q Consensus 99 a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g 177 (447)
++++++++||+++|+++...+.+.+ .++++++|+||+|+||+++|.++|++|+ ++++|+|++++.|
T Consensus 87 a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~-------------~~~ip~i~g~~~g 153 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAH-------------KKGIPLVHGAVEG 153 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEeecc
Confidence 9999999999999999998887644 5689999999999999999999999995 7899999999999
Q ss_pred ccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHHHH
Q 013224 178 FKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKR 257 (447)
Q Consensus 178 ~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~~r 257 (447)
+.|++.++.|+.|+||+|.++..+. .|.
T Consensus 154 ~~G~v~~~~p~~~~c~~~~~~~~~~-----~~~----------------------------------------------- 181 (231)
T PRK08328 154 TYGQVTTIVPGKTKRLREIFPKVKK-----KKG----------------------------------------------- 181 (231)
T ss_pred CEEEEEEECCCCCCCHHHhCCCCCC-----ccc-----------------------------------------------
Confidence 9999999999999999999743210 000
Q ss_pred HHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeE
Q 013224 258 AELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHI 322 (447)
Q Consensus 258 a~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~ 322 (447)
. .|.++|++++||+++|+|++|+|+|.++++. ..+.+|.....+.
T Consensus 182 -------------~-------~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~ 227 (231)
T PRK08328 182 -------------K-------FPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFE 227 (231)
T ss_pred -------------c-------CCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEE
Confidence 0 1457889999999999999999999877775 4567887776543
No 22
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.7e-46 Score=362.92 Aligned_cols=238 Identities=29% Similarity=0.463 Sum_probs=212.6
Q ss_pred CCCCCCCCccC--CHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHH
Q 013224 19 AGNLVGPTFEP--GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA 96 (447)
Q Consensus 19 ~~~~~r~~~~~--G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka 96 (447)
-.||+||+-++ |..+|.+|+ +++|||||||||||..+.+|+.+|+|+|-|||.|.||.|||+||.++++..+|+.||
T Consensus 44 i~RYsRQlilpe~gV~GQ~~Lk-~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka 122 (427)
T KOG2017|consen 44 ILRYSRQLILPEFGVHGQLSLK-NSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKA 122 (427)
T ss_pred HHhhhheeeccccccccccccC-CccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHH
Confidence 46899998774 899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 97 EVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 97 ~~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
++|+.+++++||+++|..|...+...+ .+.+++||+|+||+||+.+|+.||+.|+ ..++|++.++.
T Consensus 123 ~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CV-------------lLgkpLVSgSa 189 (427)
T KOG2017|consen 123 ESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCV-------------LLGKPLVSGSA 189 (427)
T ss_pred HHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHH-------------HcCCccccccc
Confidence 999999999999999999999998755 6899999999999999999999999997 56999999999
Q ss_pred ccccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHH
Q 013224 176 EGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV 255 (447)
Q Consensus 176 ~g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~ 255 (447)
.++.||+.+..-..+|||+|+++..|+......|.
T Consensus 190 Lr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~C~--------------------------------------------- 224 (427)
T KOG2017|consen 190 LRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTNCA--------------------------------------------- 224 (427)
T ss_pred ccccceeEEeecCCCceeeecCCCCcChHHhcccc---------------------------------------------
Confidence 99999999988788999999998776654444442
Q ss_pred HHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEeee-ecCCCC
Q 013224 256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEF-VKDKDC 333 (447)
Q Consensus 256 ~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~~-~~~p~C 333 (447)
. -||+ .|++.+||+|+|.|++|+++|..+++. ..++||+..+.+. .+++ .+.++|
T Consensus 225 ----d-----------gGVl-------Gpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r-~irlR~r~~~C 281 (427)
T KOG2017|consen 225 ----D-----------GGVL-------GPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFR-TIRLRSRRPKC 281 (427)
T ss_pred ----c-----------Ccee-------ecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeE-EEEeccCCCCC
Confidence 1 2443 456689999999999999999988886 5678999998665 5554 568999
Q ss_pred ccCCC
Q 013224 334 LVCGP 338 (447)
Q Consensus 334 ~vC~~ 338 (447)
.+||+
T Consensus 282 ~~Cg~ 286 (427)
T KOG2017|consen 282 AVCGK 286 (427)
T ss_pred cccCC
Confidence 99996
No 23
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=2.7e-45 Score=359.22 Aligned_cols=272 Identities=23% Similarity=0.302 Sum_probs=207.5
Q ss_pred CCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHH
Q 013224 21 NLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100 (447)
Q Consensus 21 ~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~ 100 (447)
.|+||+++||.++|+||+ +++|||+|+||+|+|+||||+++||++|+|+|.|.|+.+||+|||+|+++|||++||++++
T Consensus 1 lYsRQl~~~G~eaq~kL~-~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~ 79 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQ-KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQ 79 (286)
T ss_pred CcccceeccCHHHHHHHh-cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHH
Confidence 489999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCceEEEEEeccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccc
Q 013224 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKG 180 (447)
Q Consensus 101 ~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G 180 (447)
++|+++||.++|+++...+ ..+++++||+||+|.|+.++|.++|++|+ ++++|+|.+++.|+.|
T Consensus 80 ~~L~eLNp~V~V~~~~~~~---~~~~l~~fdvVV~~~~~~~~~~~in~~c~-------------~~~ipfI~a~~~G~~G 143 (286)
T cd01491 80 ARLAELNPYVPVTVSTGPL---TTDELLKFQVVVLTDASLEDQLKINEFCH-------------SPGIKFISADTRGLFG 143 (286)
T ss_pred HHHHHHCCCCEEEEEeccC---CHHHHhcCCEEEEecCCHHHHHHHHHHHH-------------HcCCEEEEEeccccEE
Confidence 9999999999999998764 45788999999999999999999999995 7899999999999999
Q ss_pred eEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHh-------hhhhhccCCCCCCCCChhHHHHHHHH
Q 013224 181 HARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHL-------IKWDEVHSGKSFDPDDPEHMQWVYSE 253 (447)
Q Consensus 181 ~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~-------~~~~~~~~~~~~d~dd~~~l~~i~~~ 253 (447)
++++.+ ++||.|.-.....+.+.+.|++.+.+....+|+.-.+. +.|.+-.+-.+.+...+. ..
T Consensus 144 ~vf~df---g~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~------~v 214 (286)
T cd01491 144 SIFCDF---GDEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPR------KI 214 (286)
T ss_pred EEEecC---CCeEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccE------EE
Confidence 999865 37888874333345667788887766666677532221 011110000000000000 00
Q ss_pred HHHHHHHhCCCC---CccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEcCCCe
Q 013224 254 AVKRAELFGIPG---VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGL 320 (447)
Q Consensus 254 a~~ra~~~~I~~---~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~~~~~~~~~~ 320 (447)
....-..|.|.. ......-|++..+- ++|++|++||++|||++|.+|++..|+.+|++||....+
T Consensus 215 ~~~~~~~f~i~d~~~~~~y~~gG~~~qvK--~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l 282 (286)
T cd01491 215 KVKGPYTFSIGDTSSFSEYIRGGIVTQVK--LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECL 282 (286)
T ss_pred EECCCCeEEECcCcCcCccccCcEEEEEe--cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhc
Confidence 000000111111 11112233433333 889999999999999999999999999999999976543
No 24
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=6.3e-44 Score=334.07 Aligned_cols=191 Identities=25% Similarity=0.365 Sum_probs=178.9
Q ss_pred CCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHH
Q 013224 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (447)
Q Consensus 20 ~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a 99 (447)
.+|+||+++||.++|++|+ +++|+|+|+||+|||++|+|+++||++|+|+|+|.|+.+||+|||||+++|+|++||+++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~-~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~ 80 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLR-SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEAS 80 (197)
T ss_pred chhhHHHHHhCHHHHHHHH-hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHH
Confidence 4799999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceEEEEEeccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeecccc
Q 013224 100 AKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFK 179 (447)
Q Consensus 100 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~ 179 (447)
+++|+++||+++|+++...+.+...+++++||+||+|+|+.++|.++|++|+ ++++|+|.+++.|+.
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~-------------~~~ip~i~~~~~G~~ 147 (197)
T cd01492 81 LERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCR-------------KLGVKFYATGVHGLF 147 (197)
T ss_pred HHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEEecCCE
Confidence 9999999999999999998887778899999999999999999999999994 789999999999999
Q ss_pred ceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 013224 180 GHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAE 259 (447)
Q Consensus 180 G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~~ra~ 259 (447)
|+++.++
T Consensus 148 G~v~~d~------------------------------------------------------------------------- 154 (197)
T cd01492 148 GFVFADL------------------------------------------------------------------------- 154 (197)
T ss_pred EEEEEec-------------------------------------------------------------------------
Confidence 9987532
Q ss_pred HhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEcCCC
Q 013224 260 LFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAG 319 (447)
Q Consensus 260 ~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~~~~~~~~~ 319 (447)
++|+++++|+++++|++|+++|.++++.+++.||..++
T Consensus 155 ----------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~~ 192 (197)
T cd01492 155 ----------------------LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETS 192 (197)
T ss_pred ----------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCCC
Confidence 24566899999999999999999888888999998664
No 25
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=2.3e-42 Score=323.91 Aligned_cols=187 Identities=22% Similarity=0.332 Sum_probs=173.2
Q ss_pred CCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCC--CCCCChHHHH
Q 013224 21 NLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRM--EDVGKPKAEV 98 (447)
Q Consensus 21 ~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~--~diG~~Ka~~ 98 (447)
+|+||+++||.++|++|+ ++||+|||+||+|||++|+|+++||++|+|+|+|.|+.+||+|||+|++ +|+|++||++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~-~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~ 79 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLR-SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAA 79 (198)
T ss_pred CccceeeccCHHHHHHHh-hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHH
Confidence 599999999999999999 9999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHhhCCceEEEEEeccCc---cchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 99 AAKRVMERVSGVNIVPHFCRIE---DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 99 a~~~l~~~np~v~i~~~~~~i~---~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
++++|+++||+++|+++...+. +...+++++||+||+|.|+.++|.++|++|+ ++++|+|.+++
T Consensus 80 ~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~-------------~~~ip~i~~~~ 146 (198)
T cd01485 80 SYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCR-------------KHHIPFISCAT 146 (198)
T ss_pred HHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEEe
Confidence 9999999999999999988774 3457899999999999999999999999994 78999999999
Q ss_pred ccccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHH
Q 013224 176 EGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV 255 (447)
Q Consensus 176 ~g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~ 255 (447)
.|+.|+++.+.
T Consensus 147 ~G~~G~v~~~~--------------------------------------------------------------------- 157 (198)
T cd01485 147 YGLIGYAFFDF--------------------------------------------------------------------- 157 (198)
T ss_pred ecCEEEEEEch---------------------------------------------------------------------
Confidence 99999987432
Q ss_pred HHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEcCC
Q 013224 256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVA 318 (447)
Q Consensus 256 ~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~~~~~~~~ 318 (447)
|+++++|+++|+|++|+|+|..+++.+++.||+..
T Consensus 158 ----------------------------p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~ 192 (198)
T cd01485 158 ----------------------------PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFE 192 (198)
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECcc
Confidence 23479999999999999999988888888888654
No 26
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=3.8e-42 Score=334.71 Aligned_cols=237 Identities=36% Similarity=0.625 Sum_probs=205.2
Q ss_pred CCCCCCCccCC--HHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHH
Q 013224 20 GNLVGPTFEPG--TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (447)
Q Consensus 20 ~~~~r~~~~~G--~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~ 97 (447)
.+|+||+.+|+ .++|++|+ .+||+|||+||+||+++++|+++|||+++|+|+|+|+.|||+||++|+++|+|++||+
T Consensus 9 ~ry~Rqi~l~~~~~~~q~~l~-~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~ 87 (254)
T COG0476 9 ERYSRQILLPGIGGEGQQKLK-DSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAE 87 (254)
T ss_pred HhhcceeeecccCHHHHHHHh-hCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHH
Confidence 57999999874 45599999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 98 ~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
++++.++++||.++++++...+...+ .++++++|+|++|+||+++|.++|++|+ ..++|++++++.
T Consensus 88 ~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~-------------~~~~pli~~~~~ 154 (254)
T COG0476 88 VAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACV-------------KLGIPLVHGGAI 154 (254)
T ss_pred HHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHH-------------HhCCCeEeeeec
Confidence 99999999999999999999988766 5899999999999999999999999996 678999999999
Q ss_pred cccceEEEEeCC-CCCccccccCCCCCCCCCC-cccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHH
Q 013224 177 GFKGHARVIIPG-VTPCFECTIWLFPPQVKFP-LCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 254 (447)
Q Consensus 177 g~~G~v~~~~p~-~t~c~~C~~~~~p~~~~~p-~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a 254 (447)
|+.|+++++.|+ .++||+|.++..|+....+ .|.
T Consensus 155 ~~~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~c~-------------------------------------------- 190 (254)
T COG0476 155 GFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCD-------------------------------------------- 190 (254)
T ss_pred cceEEEEEEecCCCCCcccccCCCCCCccccccccc--------------------------------------------
Confidence 999999999999 5999999988766543332 121
Q ss_pred HHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCC-CC-CcceEEEEcCCCeeEeEeeeecCCC
Q 013224 255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS-KT-LSNYLTYNGVAGLHIKVTEFVKDKD 332 (447)
Q Consensus 255 ~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~-~~-l~n~~~~~~~~~~~~~~~~~~~~p~ 332 (447)
..|+ +.++..+++.+++.|++|+++|.. .+ ....+.|+.............+++.
T Consensus 191 ----------------~~gv-------~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (254)
T COG0476 191 ----------------EAGV-------LGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLKLRRRPI 247 (254)
T ss_pred ----------------cCCc-------cccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhhhcccCCC
Confidence 1233 344556899999999999999997 44 4677888887773334566666665
Q ss_pred -CccCC
Q 013224 333 -CLVCG 337 (447)
Q Consensus 333 -C~vC~ 337 (447)
|++|+
T Consensus 248 ~~~~c~ 253 (254)
T COG0476 248 SCPVCG 253 (254)
T ss_pred CCCcCC
Confidence 99997
No 27
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-40 Score=312.75 Aligned_cols=284 Identities=19% Similarity=0.225 Sum_probs=216.6
Q ss_pred CCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHH
Q 013224 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (447)
Q Consensus 20 ~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a 99 (447)
..||||||+||.++|++|+ ++||||+|++|+|+|++|||+++||++++++|+-.|...+++-|||...+++|+.||++.
T Consensus 12 alYDRQIRLWG~~AQ~~lr-~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas 90 (331)
T KOG2014|consen 12 ALYDRQIRLWGLEAQRRLR-KSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEAS 90 (331)
T ss_pred HHHHHHHHHccHHHHHhhh-hceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHH
Confidence 4699999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceEEEEEeccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeecccc
Q 013224 100 AKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFK 179 (447)
Q Consensus 100 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~ 179 (447)
.++++.+||.|+|.....++.+.+.+||.+||+||..--+.+++..+|.+|+ +.+++|+.+++.|+.
T Consensus 91 ~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icr-------------k~~i~F~a~d~~g~~ 157 (331)
T KOG2014|consen 91 LERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICR-------------KLNIAFYAGDCFGLC 157 (331)
T ss_pred HHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHH-------------hcCceEEecccccee
Confidence 9999999999999999999999999999999999999889999999999994 778999999999999
Q ss_pred ceEEEEeCCCCCccc-----cccCCCC---CCC-CCCcccccCCcCChhhH-HHHH------------------Hhhhhh
Q 013224 180 GHARVIIPGVTPCFE-----CTIWLFP---PQV-KFPLCTLAETPRTAAHC-IEYA------------------HLIKWD 231 (447)
Q Consensus 180 G~v~~~~p~~t~c~~-----C~~~~~p---~~~-~~p~ct~~~~p~~~~hc-i~~a------------------~~~~~~ 231 (447)
|+++..+..+..--+ |.-.... .+. ..+.-..-.+|..-|.+ ..|. ..+.+.
T Consensus 158 Gy~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~f~ 237 (331)
T KOG2014|consen 158 GYAFADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLKFR 237 (331)
T ss_pred eeeeeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHHHH
Confidence 999988765331111 1100000 000 00111111223222222 1121 001111
Q ss_pred hccCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcce
Q 013224 232 EVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY 311 (447)
Q Consensus 232 ~~~~~~~~d~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~ 311 (447)
+...+.+- ....++++.+....++-....+|.+..+ ..+...+.+.++|++|+|||+++||++|.+++..+|++|+
T Consensus 238 ~s~~r~pg-~~~~~d~erl~~I~~ell~s~~i~pd~~---~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nf 313 (331)
T KOG2014|consen 238 TSEGRDPG-ETSEEDLERLLQIRNELLESETIIPDEL---LEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNF 313 (331)
T ss_pred HhcCCCCc-cccHHHHHHHHHHHHhhccccccCCchH---HHHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccce
Confidence 11111111 2234566666666665555333333222 2456677799999999999999999999999999999999
Q ss_pred EEEEcCCCee
Q 013224 312 LTYNGVAGLH 321 (447)
Q Consensus 312 ~~~~~~~~~~ 321 (447)
|+||+..+..
T Consensus 314 f~fdg~~g~g 323 (331)
T KOG2014|consen 314 FIFDGETGKG 323 (331)
T ss_pred EEeecccCce
Confidence 9999988754
No 28
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=1.9e-39 Score=323.98 Aligned_cols=255 Identities=15% Similarity=0.143 Sum_probs=199.7
Q ss_pred CCCCCCCcc---CC-HHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChH
Q 013224 20 GNLVGPTFE---PG-TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK 95 (447)
Q Consensus 20 ~~~~r~~~~---~G-~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~K 95 (447)
.||.||+.+ +| .++|++|+ +++|+ |||+|+.++.+|+. |||+|+|+|.|.|+.|||+ +||+++|||++|
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~-~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K 125 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLK-KSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKD 125 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHh-hCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHH
Confidence 479999877 34 55899999 99999 99999999999999 9999999999999999999 899999999999
Q ss_pred HHHHHHHHHhhCCceEEEEEeccCccchhhccCCceEEEcccCCHHHHH--HHHHHHHhhccccCCCcccccCCCcEEEe
Q 013224 96 AEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARS--YINAVACSFLEYETDDKPREETIKPMVDG 173 (447)
Q Consensus 96 a~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~--~in~~~~~l~~~~~~~~~~~~~~~pli~~ 173 (447)
+++|+++|.++||.++|+.. .++++++|+||+|+||+.+|. |+|++|+ +.++|||.|
T Consensus 126 ~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac~-------------~~~~PlV~g 184 (318)
T TIGR03603 126 IRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLSK-------------ETKKPNTIA 184 (318)
T ss_pred HHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHHH-------------HHCCCEEEE
Confidence 99999999999999999864 357889999999999999994 5999996 789999999
Q ss_pred eeccccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHH
Q 013224 174 GTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE 253 (447)
Q Consensus 174 g~~g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~ 253 (447)
+..|+.||+.++.|+.|+||+|.++........+ .++. |.++
T Consensus 185 av~g~~Gqv~~~~P~~t~C~~Cl~~r~~~~~~~~-----~~~~----------------------~~~~----------- 226 (318)
T TIGR03603 185 FIDGPFVFITCTLPPETGCFECLERRLLSRLDWR-----LYGV----------------------FTEY----------- 226 (318)
T ss_pred EEccCEEEEEEEeCCCCCcHHHccchhhcccccc-----cccc----------------------cccc-----------
Confidence 9999999999999999999999965211100000 0000 0000
Q ss_pred HHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCC-C-cceEEEEcCCCeeEeEeeeecCC
Q 013224 254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKT-L-SNYLTYNGVAGLHIKVTEFVKDK 331 (447)
Q Consensus 254 a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~-l-~n~~~~~~~~~~~~~~~~~~~~p 331 (447)
.++... ... ..+.+.|+++++|++++.|++ +++|.+++ + ...+.||..+.... ..++.++|
T Consensus 227 --------~~~~~~---~~~----~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~~t~~~~-~~~l~k~p 289 (318)
T TIGR03603 227 --------LVKAEN---NVS----TAELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINLPTLEIQ-FQDILKQS 289 (318)
T ss_pred --------cCCCCC---CCc----cCCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEECCCCeEE-EEecCCCC
Confidence 000000 000 014467889999999999999 99987664 3 56778898887664 78889999
Q ss_pred CCccCCCceeEecC-CCCCHHHHHHHH
Q 013224 332 DCLVCGPGVLIELD-TSVTLEKFINLL 357 (447)
Q Consensus 332 ~C~vC~~~~~~~~~-~~~tl~~l~~~l 357 (447)
+||+||...++... -+++-+++++.+
T Consensus 290 ~Cp~CG~~~~~~~~~~~~~~~~~~~~~ 316 (318)
T TIGR03603 290 CCSTCGTFNKIKFEEQNISTRNIVKEL 316 (318)
T ss_pred CCcccCCccccchhhhhhhHHHHHHHH
Confidence 99999973333333 255666677665
No 29
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=7.9e-39 Score=329.69 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=150.9
Q ss_pred CCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHH
Q 013224 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (447)
Q Consensus 20 ~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a 99 (447)
.+||||+++||.++|++|. +++|+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+|||+++.+|+|++||+++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~-~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~ 79 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALE-SAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEAT 79 (425)
T ss_pred CcchHHHHHhHHHHHHHHh-hCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHH
Confidence 4799999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceEEEEEeccCcc---chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 100 AKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 100 ~~~l~~~np~v~i~~~~~~i~~---~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++|+++||+++++.+...+.+ .+.+|+++||+||++.++...+..++++|. ++++|+|.+++.
T Consensus 80 ~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~-------------~~~iPlI~~~s~ 146 (425)
T cd01493 80 CELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLW-------------SANIPLLYVRSY 146 (425)
T ss_pred HHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEecc
Confidence 9999999999999999887753 457899999999999999999999999994 789999999999
Q ss_pred cccceEEEEeCCCCCccccc
Q 013224 177 GFKGHARVIIPGVTPCFECT 196 (447)
Q Consensus 177 g~~G~v~~~~p~~t~c~~C~ 196 (447)
|+.|++++..|.++ +.++.
T Consensus 147 G~~G~v~v~~~~h~-i~et~ 165 (425)
T cd01493 147 GLYGYIRIQLKEHT-IVESH 165 (425)
T ss_pred cCEEEEEEEECCeE-EEECC
Confidence 99999999998533 55543
No 30
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=4.1e-38 Score=352.21 Aligned_cols=282 Identities=21% Similarity=0.247 Sum_probs=213.5
Q ss_pred CCCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHH
Q 013224 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (447)
Q Consensus 19 ~~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~ 98 (447)
..+|+||+++||.++|++|+ +++|||+|+||||+|+||||+++|||+|+|+|+|.|+.+||+|||+|+++|||++||++
T Consensus 4 ~~lYsRQi~l~G~eaq~kL~-~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea 82 (1008)
T TIGR01408 4 EALYSRQLYVLGDEAMQKMA-KSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEA 82 (1008)
T ss_pred HhhhhhHHHhcCHHHHHHHh-hCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHH
Confidence 35799999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceEEEEEeccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCC--CcEEEeeec
Q 013224 99 AAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI--KPMVDGGTE 176 (447)
Q Consensus 99 a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~--~pli~~g~~ 176 (447)
++++|+++||.|+|+++...+. .+++++||+||+|.++.+.+.++|++|+ .++ +|||.+++.
T Consensus 83 ~~~~L~eLNp~V~V~~~~~~l~---~e~l~~fdvVV~t~~~~~~~~~in~~cr-------------~~~~~I~fI~~~~~ 146 (1008)
T TIGR01408 83 VVKKLAELNPYVHVSSSSVPFN---EEFLDKFQCVVLTEMSLPLQKEINDFCH-------------SQCPPIAFISADVR 146 (1008)
T ss_pred HHHHHHHHCCCceEEEecccCC---HHHHcCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCeEEEEEeec
Confidence 9999999999999999987764 5689999999999999999999999995 677 999999999
Q ss_pred cccceEEEEeCCCCCccccccCC--CCCCCCCCcccc-------------------------------------------
Q 013224 177 GFKGHARVIIPGVTPCFECTIWL--FPPQVKFPLCTL------------------------------------------- 211 (447)
Q Consensus 177 g~~G~v~~~~p~~t~c~~C~~~~--~p~~~~~p~ct~------------------------------------------- 211 (447)
|+.|+++..+. +|+.|.... .|....+..|+-
T Consensus 147 G~~G~vf~D~g---~~f~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~ 223 (1008)
T TIGR01408 147 GLFGSLFCDFG---DEFEVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITV 223 (1008)
T ss_pred ceEEEEEecCC---CceEEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEe
Confidence 99999988654 333333210 000000000100
Q ss_pred -------------------------cCCcCC------------hh------------hHHHHHH--hhhhhhccCCCCCC
Q 013224 212 -------------------------AETPRT------------AA------------HCIEYAH--LIKWDEVHSGKSFD 240 (447)
Q Consensus 212 -------------------------~~~p~~------------~~------------hci~~a~--~~~~~~~~~~~~~d 240 (447)
...|.. |+ ..+..+. ...|...+++.+-
T Consensus 224 ~~~~~f~i~dt~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~- 302 (1008)
T TIGR01408 224 ISPYSFSIGDTTELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPN- 302 (1008)
T ss_pred cCCceEEeccccccchhhcCceEEEEeccccccccCHHHHHcCCcccccchhhcCCchhHHHHHHHHHHHHHHcCCCCC-
Confidence 000000 00 0011111 1123333322221
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCC--CccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEcCC
Q 013224 241 PDDPEHMQWVYSEAVKRAELFGIPG--VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVA 318 (447)
Q Consensus 241 ~dd~~~l~~i~~~a~~ra~~~~I~~--~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~~~~~~~~ 318 (447)
+-+.++.+-+.+.++....+.+... ++...++.++...-..++|++|++||+++||++|.++|+..|+.+|++||+..
T Consensus 303 ~~~~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e 382 (1008)
T TIGR01408 303 VGCQQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAE 382 (1008)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhh
Confidence 2344555666677777777666432 44455665655555678999999999999999999999999999999999876
Q ss_pred Cee
Q 013224 319 GLH 321 (447)
Q Consensus 319 ~~~ 321 (447)
++.
T Consensus 383 ~l~ 385 (1008)
T TIGR01408 383 SLP 385 (1008)
T ss_pred hCC
Confidence 654
No 31
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=338.34 Aligned_cols=244 Identities=20% Similarity=0.284 Sum_probs=195.4
Q ss_pred CCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHH
Q 013224 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (447)
Q Consensus 20 ~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a 99 (447)
.+|+||+.+||.++|+||+ +++|+|||+||+||+++++|+++|||+|+|+|+|.|+.|||||||+|+.+|||++||+++
T Consensus 313 ~ry~Rqi~lig~e~Q~kL~-~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaeva 391 (989)
T PRK14852 313 IAFSRNLGLVDYAGQRRLL-RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVM 391 (989)
T ss_pred HHhhchHhhcCHHHHHHHh-cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHH
Confidence 4799999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCC--HHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 100 AKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDS--IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 100 ~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn--~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++++++||.++|+++...+.+.+ .+|++++|+||+|+|+ .++|+++++.|+ ++++|+|.+|+.
T Consensus 392 a~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~-------------~~~IP~I~ag~~ 458 (989)
T PRK14852 392 TERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL-------------ELGIPVITAGPL 458 (989)
T ss_pred HHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH-------------HcCCCEEEeecc
Confidence 999999999999999999997644 6899999999999997 467889999994 789999999999
Q ss_pred cccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHHH
Q 013224 177 GFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVK 256 (447)
Q Consensus 177 g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~~ 256 (447)
|+.|++.++.|+ ..||+|.++..+.... .|-+ +.+ .....+. +.|+.++-..
T Consensus 459 G~~g~v~v~~p~-~~~~~~~f~~~~~~p~-------------~~~~-----~~~-----~l~~~p~-~~~~~~~~~~--- 510 (989)
T PRK14852 459 GYSCALLVFMPG-GMNFDSYFGIDDDTPP-------------MEGY-----LRF-----GMGLAPR-PAHLGYMDRR--- 510 (989)
T ss_pred ccCeeEEEEcCC-CCCHHHhCCCCCCCch-------------Hhhh-----hhh-----hccCCcc-hhhhcccCcc---
Confidence 999999999887 5999999875433211 1110 000 0001111 2333222110
Q ss_pred HHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCC--cceEEEEcCCC
Q 013224 257 RAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL--SNYLTYNGVAG 319 (447)
Q Consensus 257 ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l--~n~~~~~~~~~ 319 (447)
.+ .+...--|++++.+.+-||+++.|++|++.|.++.. ..++.||...+
T Consensus 511 --------~~------~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~~p~~~qfd~~~~ 561 (989)
T PRK14852 511 --------FV------SLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRPVPYFRQFDPLTG 561 (989)
T ss_pred --------cc------cccccCCCchHHHHHHhHHHHHHHHHHHHhCCCccccCcchhccchhhc
Confidence 01 222234599999999999999999999999986543 34556665443
No 32
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=1.8e-36 Score=286.82 Aligned_cols=147 Identities=30% Similarity=0.449 Sum_probs=135.3
Q ss_pred ccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhh
Q 013224 27 FEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER 106 (447)
Q Consensus 27 ~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~ 106 (447)
..+|.++|++|+ +++|+|||+||+||+++++|+++||++|+|+|.|.|+.+||+||++| ++|+|++||++++++++++
T Consensus 16 ~~~g~~~q~~L~-~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~l 93 (212)
T PRK08644 16 SRHTPKLLEKLK-KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEI 93 (212)
T ss_pred hhcCHHHHHHHh-CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHH
Confidence 348999999999 99999999999999999999999999999999999999999999865 7899999999999999999
Q ss_pred CCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccC-CCcEEEeeeccccceEEE
Q 013224 107 VSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET-IKPMVDGGTEGFKGHARV 184 (447)
Q Consensus 107 np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~-~~pli~~g~~g~~G~v~~ 184 (447)
||+++++++...+++.+ .++++++|+||+|+||+++|..+++.|. ++ ++|+|.++..+..|++..
T Consensus 94 np~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~-------------~~~~~p~I~~~~~~~~~~~~~ 160 (212)
T PRK08644 94 NPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVL-------------EHPGKKLVAASGMAGYGDSNS 160 (212)
T ss_pred CCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH-------------HhCCCCEEEeehhhccCCceE
Confidence 99999999999988755 4789999999999999999999999995 55 899999977788888776
Q ss_pred EeCC
Q 013224 185 IIPG 188 (447)
Q Consensus 185 ~~p~ 188 (447)
+.|.
T Consensus 161 ~~~~ 164 (212)
T PRK08644 161 IKTR 164 (212)
T ss_pred EEec
Confidence 6664
No 33
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=327.23 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=158.7
Q ss_pred CCCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHH
Q 013224 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (447)
Q Consensus 19 ~~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~ 98 (447)
..+|+||+.+||.++|++|+ +++|+|||+||+||+++++|+++|||+|+|+|+|.|++||||||++|+.+|||++|+++
T Consensus 23 ~~ry~R~~~l~g~e~Q~kL~-~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v 101 (679)
T PRK14851 23 EAAFSRNIGLFTPGEQERLA-EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAV 101 (679)
T ss_pred HHHhhhhHHhcCHHHHHHHh-cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHH
Confidence 36799999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCC--HHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDS--IEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 99 a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn--~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
++++++++||.++|+++...+++.+ .+|++++|+||+|+|+ +++|+++|+.|+ .+++|+|.+|+
T Consensus 102 ~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~-------------~~~iP~i~~g~ 168 (679)
T PRK14851 102 MKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR-------------EKGIPVITAGP 168 (679)
T ss_pred HHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH-------------HCCCCEEEeec
Confidence 9999999999999999999998766 6899999999999997 578999999995 78999999999
Q ss_pred ccccceEEEEeCCCCCccccccCCCC
Q 013224 176 EGFKGHARVIIPGVTPCFECTIWLFP 201 (447)
Q Consensus 176 ~g~~G~v~~~~p~~t~c~~C~~~~~p 201 (447)
.|+.|++.++.|+ +.||+|.++..+
T Consensus 169 ~G~~g~~~~~~p~-~~~~~~~~~~~~ 193 (679)
T PRK14851 169 LGYSSAMLVFTPQ-GMGFDDYFNIGG 193 (679)
T ss_pred ccccceEEEEcCC-CCCHhHhccCCC
Confidence 9999999999987 899999987543
No 34
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=8.2e-35 Score=306.81 Aligned_cols=152 Identities=24% Similarity=0.354 Sum_probs=136.5
Q ss_pred HHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCC---CChHHHHHHHHHHhhC
Q 013224 31 TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV---GKPKAEVAAKRVMERV 107 (447)
Q Consensus 31 ~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~di---G~~Ka~~a~~~l~~~n 107 (447)
.-+.++|+ ++||+|||||||||++|++|+++|||+|+|||+|+|+.|||+||+||+.+|+ |++||++|+++|+++|
T Consensus 330 ~l~~ekL~-~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~In 408 (664)
T TIGR01381 330 DLQLERYS-QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIF 408 (664)
T ss_pred hhhHHHHh-cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHC
Confidence 34458999 9999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CceEEEEEeccC-------cc-----------chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCc
Q 013224 108 SGVNIVPHFCRI-------ED-----------KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKP 169 (447)
Q Consensus 108 p~v~i~~~~~~i-------~~-----------~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~p 169 (447)
|+++++++..++ .+ ...++++++|+|++|+||+++|..+|.+|+ .+++|
T Consensus 409 P~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~-------------~~~kp 475 (664)
T TIGR01381 409 PSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCS-------------RHKKI 475 (664)
T ss_pred CCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHH-------------HhCCC
Confidence 999999998774 32 124688999999999999999999999995 78999
Q ss_pred EEEeeeccccceEEEEe------------------CCCCCcccccc
Q 013224 170 MVDGGTEGFKGHARVII------------------PGVTPCFECTI 197 (447)
Q Consensus 170 li~~g~~g~~G~v~~~~------------------p~~t~c~~C~~ 197 (447)
+|+++ .|+.|++.+.- +...+||.|.-
T Consensus 476 lI~aA-lGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~D 520 (664)
T TIGR01381 476 AISAA-LGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCND 520 (664)
T ss_pred EEEEE-eccceEEEEEecccccccccccccccccCCCCCCccccCC
Confidence 99985 89999987651 12588999993
No 35
>PRK07877 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-34 Score=309.64 Aligned_cols=164 Identities=24% Similarity=0.296 Sum_probs=150.0
Q ss_pred CCCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCChHHH
Q 013224 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (447)
Q Consensus 19 ~~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gv-g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~ 97 (447)
..+|+|++.++|.++|++|+ +++|+|||+| +||.++.+|+++|| |+|+|+|+|.||+|||||| +|+..|+|++||+
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~-~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~ 163 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLG-RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAV 163 (722)
T ss_pred HHHhhchhhhCCHHHHHHHh-cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHH
Confidence 36899999999999999999 9999999997 99999999999996 9999999999999999999 6999999999999
Q ss_pred HHHHHHHhhCCceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 98 ~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
+++++|+++||+++|+++...+++.+ .+|++++|+||+|+||+++|.++|+.|+ +++||+|.++..
T Consensus 164 ~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~-------------~~~iP~i~~~~~ 230 (722)
T PRK07877 164 VAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAAR-------------ARRIPVLMATSD 230 (722)
T ss_pred HHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEcCC
Confidence 99999999999999999999998755 6789999999999999999999999995 789999999854
Q ss_pred cccceEE----EEeCCCCCccccccCCCC
Q 013224 177 GFKGHAR----VIIPGVTPCFECTIWLFP 201 (447)
Q Consensus 177 g~~G~v~----~~~p~~t~c~~C~~~~~p 201 (447)
+ |++. -+.| .++||+|+++..+
T Consensus 231 ~--g~~~~e~~~~~p-~~pc~~cl~~~~~ 256 (722)
T PRK07877 231 R--GLLDVERFDLEP-DRPILHGLLGDID 256 (722)
T ss_pred C--CCcCcceeeeCC-CCceeeccCCCCC
Confidence 4 7763 2345 6999999987544
No 36
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=8.2e-33 Score=254.17 Aligned_cols=142 Identities=28% Similarity=0.430 Sum_probs=129.8
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
||+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+||+ |..+|+|++||++++++++++||.++++++..++++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~-~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ-YFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccc-ccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 6999999999999999999999999999999999999999999 457899999999999999999999999999999876
Q ss_pred ch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEEeCCC--CCccccc
Q 013224 122 KD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV--TPCFECT 196 (447)
Q Consensus 122 ~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~~p~~--t~c~~C~ 196 (447)
.+ .++++++|+||+|+||+++|..+++.|. +.+++|+|.++..++.|++..+.|+. .+||+|.
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~------------~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLL------------GNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHH------------HHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 44 5789999999999999999998888885 24599999999999999998887654 5799997
No 37
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=100.00 E-value=4.9e-32 Score=259.78 Aligned_cols=161 Identities=30% Similarity=0.348 Sum_probs=139.4
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhCC-----C-----eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 013224 39 EYARILVVGAGGLGCELLKDLALSGF-----K-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS 108 (447)
Q Consensus 39 ~~~~VlvvG~GglG~eiak~La~~Gv-----g-----~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np 108 (447)
+.++|+|||+||+||+++++||++|+ | +|+|+|+|+|+.|||+|| +|.+.|||++||+++++++++.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~- 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM- 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc-
Confidence 38999999999999999999999973 4 999999999999999999 68899999999999999999988
Q ss_pred ceEEEEEeccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec--------cc--
Q 013224 109 GVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE--------GF-- 178 (447)
Q Consensus 109 ~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~--------g~-- 178 (447)
+++|+++..++.+ .+++.++|+||+|+||+++|.+|++.|... ....+||+++|+. |.
T Consensus 88 ~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~----------~~~~~~~ld~Gn~~~~gqv~~g~i~ 155 (244)
T TIGR03736 88 GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEGG----------YSGYAYWLDLGNRADDGQVILGQVP 155 (244)
T ss_pred CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHHh----------cccccceecccCCCCCCcEEEEecc
Confidence 8999999988876 345678999999999999999999999631 0225899999994 44
Q ss_pred ---cceEEEEeCCCCCccccccCCCC-CCCCCCcccccC
Q 013224 179 ---KGHARVIIPGVTPCFECTIWLFP-PQVKFPLCTLAE 213 (447)
Q Consensus 179 ---~G~v~~~~p~~t~c~~C~~~~~p-~~~~~p~ct~~~ 213 (447)
+|+..+++|+.|.||.|+++..+ ++++.|.||+++
T Consensus 156 ~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~ 194 (244)
T TIGR03736 156 SRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAE 194 (244)
T ss_pred cccccCCceecCCchhhCcccccCccCCCCCCCCchHHH
Confidence 56677788999999999976433 677899999774
No 38
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.98 E-value=5.9e-32 Score=238.36 Aligned_cols=132 Identities=39% Similarity=0.619 Sum_probs=121.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
++||+|+|+||+|++++++|+++|+++|+|+|+|.|+++||+||+||+.+|+|++||++++++++++||++++++++.++
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEE
Q 013224 120 ED-KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARV 184 (447)
Q Consensus 120 ~~-~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~ 184 (447)
.+ ...++++++|+||+|+|+.++|.++|++|. ++++|+|++++.|+.|+++.
T Consensus 82 ~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~-------------~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 82 DEENIEELLKDYDIVIDCVDSLAARLLLNEICR-------------EYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHH-------------HTT-EEEEEEEETTEEEEEE
T ss_pred ccccccccccCCCEEEEecCCHHHHHHHHHHHH-------------HcCCCEEEEEeecCEEEEEE
Confidence 54 446788999999999999999999999994 78999999999999999854
No 39
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.98 E-value=3.9e-31 Score=258.12 Aligned_cols=130 Identities=31% Similarity=0.452 Sum_probs=118.8
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCC--CCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMED--VGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~d--iG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
||+|||+|||||++|++|+++|||+|+|+|+|.|+.|||+||+||+.+| +|++||++|+++|+++||+++++++...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999998665
Q ss_pred c----------------c--chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccce
Q 013224 120 E----------------D--KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGH 181 (447)
Q Consensus 120 ~----------------~--~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~ 181 (447)
. + ...++++++|+|++|+||.++|..+|.+|. .+++|+|+ +..|+.|+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~-------------~~~k~~I~-aalGfdg~ 146 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSA-------------AKNKLVIN-AALGFDSY 146 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHH-------------HhCCcEEE-EEeccceE
Confidence 1 1 125788999999999999999999999995 77899998 57799999
Q ss_pred EEEE
Q 013224 182 ARVI 185 (447)
Q Consensus 182 v~~~ 185 (447)
+..-
T Consensus 147 lvmr 150 (307)
T cd01486 147 LVMR 150 (307)
T ss_pred EEEE
Confidence 8654
No 40
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.98 E-value=3.4e-31 Score=248.45 Aligned_cols=152 Identities=26% Similarity=0.423 Sum_probs=128.7
Q ss_pred cCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhC
Q 013224 28 EPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV 107 (447)
Q Consensus 28 ~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~n 107 (447)
.+|++.|++|+ +++|+|||+||+|++++++|+++||++|+|+|.|.|+.+||+||+ |..+|+|++|+++++++++++|
T Consensus 10 ~~~~~~q~~L~-~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 10 RHTPKIVQKLE-QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEIN 87 (200)
T ss_pred hcCHHHHHHHh-CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHC
Confidence 35899999999 999999999999999999999999999999999999999999996 6779999999999999999999
Q ss_pred CceEEEEEeccCccch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccC-CCcEEEeeeccccceE--E
Q 013224 108 SGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET-IKPMVDGGTEGFKGHA--R 183 (447)
Q Consensus 108 p~v~i~~~~~~i~~~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~-~~pli~~g~~g~~G~v--~ 183 (447)
|.++++++..++++.+ .++++++|+||+|+||.++|..+++.|.. .. ..+++.+ .|+.|+. .
T Consensus 88 p~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~------------~~~~~~ii~~--~g~~g~~~~~ 153 (200)
T TIGR02354 88 PYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLE------------KYKDKYLIAA--SGLAGYDDAN 153 (200)
T ss_pred CCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH------------HcCCCcEEEE--eccccCCCCc
Confidence 9999999999998655 56899999999999999999998777642 33 3455553 4555544 3
Q ss_pred EEeCC--CCCcccc
Q 013224 184 VIIPG--VTPCFEC 195 (447)
Q Consensus 184 ~~~p~--~t~c~~C 195 (447)
.+.+. ...||.|
T Consensus 154 ~~~~~~~~~~~~~~ 167 (200)
T TIGR02354 154 SIKTRKISKHFYLC 167 (200)
T ss_pred eEEecccCCCEEEc
Confidence 34332 3568888
No 41
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.97 E-value=2.2e-31 Score=258.76 Aligned_cols=146 Identities=27% Similarity=0.340 Sum_probs=133.9
Q ss_pred CCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHH
Q 013224 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (447)
Q Consensus 20 ~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a 99 (447)
.+|+|+.++||.++|++|+ +++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|||||+++..+|+|++||+++
T Consensus 11 ~rf~R~~~L~G~e~~~kL~-~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 11 QRFGGTARLYGEKALQLFA-DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHHhhHHHHhCHHHHHHhc-CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHH
Confidence 4799999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceEEEEEeccCccch-hhcc-CCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeecc
Q 013224 100 AKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (447)
Q Consensus 100 ~~~l~~~np~v~i~~~~~~i~~~~-~~~~-~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g 177 (447)
+++++++||+++|+++...+.+.+ .+++ .++|+||+|.|++.++..++++|. ++++|+|.+|-.|
T Consensus 90 ~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~-------------~~~ip~I~~gGag 156 (268)
T PRK15116 90 AERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCR-------------RNKIPLVTTGGAG 156 (268)
T ss_pred HHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHH-------------HcCCCEEEECCcc
Confidence 999999999999999988776433 4555 479999999999999999999994 7899999886555
Q ss_pred cc
Q 013224 178 FK 179 (447)
Q Consensus 178 ~~ 179 (447)
-+
T Consensus 157 ~k 158 (268)
T PRK15116 157 GQ 158 (268)
T ss_pred cC
Confidence 43
No 42
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.97 E-value=2.1e-30 Score=230.53 Aligned_cols=132 Identities=42% Similarity=0.655 Sum_probs=125.8
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
||+|||+||+|++++++|+++|+++|+|+|+|.|+.+||+||++++++|+|++||++++++++++||+++++.+...+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ch-hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEEe
Q 013224 122 KD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 186 (447)
Q Consensus 122 ~~-~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~~ 186 (447)
.+ .++++++|+||+|.|+.++|.++|++|. ++++|+|++|+.|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~-------------~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACK-------------ELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEcCCCcEEEEEEEE
Confidence 43 6888999999999999999999999994 7899999999999999999887
No 43
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=1.9e-30 Score=248.00 Aligned_cols=138 Identities=32% Similarity=0.375 Sum_probs=127.8
Q ss_pred CCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 013224 29 PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS 108 (447)
Q Consensus 29 ~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np 108 (447)
+|.++|++|+ +++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|||||++++.+|+|++||++++++++++||
T Consensus 1 ~G~e~~~~L~-~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP 79 (231)
T cd00755 1 YGEEGLEKLR-NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP 79 (231)
T ss_pred CCHHHHHHHh-CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence 5899999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeccCccch-hhcc-CCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccc
Q 013224 109 GVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKG 180 (447)
Q Consensus 109 ~v~i~~~~~~i~~~~-~~~~-~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G 180 (447)
+++|+++...+.+.+ .+++ .++|+||+|.|+.+++..++++|+ ++++|+|.++..|.+.
T Consensus 80 ~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~-------------~~~ip~I~s~g~g~~~ 140 (231)
T cd00755 80 ECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCR-------------KRKIPVISSMGAGGKL 140 (231)
T ss_pred CcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHH-------------HhCCCEEEEeCCcCCC
Confidence 999999999887533 4454 579999999999999999999995 7899999997777654
No 44
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.97 E-value=3.6e-30 Score=243.19 Aligned_cols=241 Identities=24% Similarity=0.401 Sum_probs=193.5
Q ss_pred hccCCCCCCCCc--cCC-HHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCC
Q 013224 16 LLRAGNLVGPTF--EPG-TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG 92 (447)
Q Consensus 16 l~~~~~~~r~~~--~~G-~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG 92 (447)
+-.+.+|+|.-- ..| .+-.+||+ ...|.|||.||+|+-.|..|.++|+|++.++|.|+||+.|+||-| |+++..|
T Consensus 56 VVDSNPYSRLMALqRMgIV~dYErIR-~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaG 133 (422)
T KOG2336|consen 56 VVDSNPYSRLMALQRMGIVDDYERIR-EFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAG 133 (422)
T ss_pred HhcCChHHHHHHHHHhcchhhHHHHh-hheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCccccc
Confidence 566788988321 123 56678999 999999999999999999999999999999999999999999996 7999999
Q ss_pred ChHHHHHHHHHHhhCCceEEEEEeccCcc--chhhc---------c--CCceEEEcccCCHHHHHHHHHHHHhhccccCC
Q 013224 93 KPKAEVAAKRVMERVSGVNIVPHFCRIED--KDISF---------Y--NDFNIIVLGLDSIEARSYINAVACSFLEYETD 159 (447)
Q Consensus 93 ~~Ka~~a~~~l~~~np~v~i~~~~~~i~~--~~~~~---------~--~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~ 159 (447)
.+|+++|...|..+||+|.++.|.-.|+. .-+.| . +..|+|+.|+||+++|..+|.+|-
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACN-------- 205 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACN-------- 205 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHH--------
Confidence 99999999999999999999999988763 11122 1 347999999999999999999994
Q ss_pred CcccccCCCcEEEeeec--cccceEEEEeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCC
Q 013224 160 DKPREETIKPMVDGGTE--GFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGK 237 (447)
Q Consensus 160 ~~~~~~~~~pli~~g~~--g~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~ 237 (447)
+.+.-|..+|+. ...||++.+.||.|+||.|..+..-.
T Consensus 206 -----E~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPPlVVA----------------------------------- 245 (422)
T KOG2336|consen 206 -----ELNQTWMESGVSENAVSGHIQLIVPGETACFACAPPLVVA----------------------------------- 245 (422)
T ss_pred -----HhhhHHHHccCccccccceeEEecCCccceecccCceeee-----------------------------------
Confidence 556778888876 45899999999999999998431100
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEcC
Q 013224 238 SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGV 317 (447)
Q Consensus 238 ~~d~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~~~~l~n~~~~~~~ 317 (447)
.||++.+ ..-.|++. .++.||.+++||+++|..+|+|...++ .+.|+-|+..
T Consensus 246 -----------------------s~IDErT-LKReGVCA---ASLPTTMgvvAG~LVqN~LK~LLNFGe-VS~YlGYNal 297 (422)
T KOG2336|consen 246 -----------------------SGIDERT-LKREGVCA---ASLPTTMGVVAGFLVQNSLKFLLNFGE-VSPYLGYNAL 297 (422)
T ss_pred -----------------------cCcchhh-hhhcceee---ecCcchHHHHHHHHHHHHHHHHhhccc-cchhhcchhH
Confidence 0111111 01246654 446789999999999999999998765 6788888887
Q ss_pred CCeeEeEeeeecCCCCcc
Q 013224 318 AGLHIKVTEFVKDKDCLV 335 (447)
Q Consensus 318 ~~~~~~~~~~~~~p~C~v 335 (447)
...+ .+.++.|||.|--
T Consensus 298 ~DFF-P~msmkPNPqCdd 314 (422)
T KOG2336|consen 298 SDFF-PTMSMKPNPQCDD 314 (422)
T ss_pred HhhC-ccccCCCCCCCCc
Confidence 6555 4788899998863
No 45
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-29 Score=266.99 Aligned_cols=151 Identities=26% Similarity=0.382 Sum_probs=143.2
Q ss_pred CCCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHH
Q 013224 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (447)
Q Consensus 19 ~~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~ 98 (447)
.+-|+||+++.|.++.+||+ .++|||.|+||||.||||||+++||+++||.|...+..++|..||+++++|||+++|++
T Consensus 17 E~LYSRQLYVlG~eAM~~m~-~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~a 95 (1013)
T KOG2012|consen 17 ESLYSRQLYVLGHEAMRRMQ-GSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEA 95 (1013)
T ss_pred hhhhhhhhhhccHHHHHHHh-hCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHH
Confidence 35699999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceEEEEEeccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccc
Q 013224 99 AAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (447)
Q Consensus 99 a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~ 178 (447)
..++|+++|+.|.|.++...++ .+|+++|++||.+--+.+....||++|+ +++|.+|.+.+.|.
T Consensus 96 s~~~LaeLN~yV~V~v~t~~~~---~e~L~~FqvVVlt~~~le~q~~i~~fch-------------~~~i~fi~ad~RGL 159 (1013)
T KOG2012|consen 96 SVEKLAELNNYVPVVVLTGPLT---EEFLSDFQVVVLTDASLEEQLKINDFCH-------------SHGIAFIAADTRGL 159 (1013)
T ss_pred HHHHHHHhhcceeeEEecCccc---HHHHhCCcEEEEecCchHHHHHHHHHHH-------------hcCeEEEEeccchh
Confidence 9999999999999999987654 7899999999999888999999999995 78999999999999
Q ss_pred cceEEEEe
Q 013224 179 KGHARVII 186 (447)
Q Consensus 179 ~G~v~~~~ 186 (447)
.|+++..+
T Consensus 160 fg~lFCDF 167 (1013)
T KOG2012|consen 160 FGQLFCDF 167 (1013)
T ss_pred hhhhhccC
Confidence 99987764
No 46
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-28 Score=242.98 Aligned_cols=159 Identities=22% Similarity=0.272 Sum_probs=145.8
Q ss_pred ccCCCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHH
Q 013224 17 LRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA 96 (447)
Q Consensus 17 ~~~~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka 96 (447)
....+||||+|+||+++|..|. .++|+++|||++|||++|||++.|||+++++|...|+.+++..+|+...+++|++||
T Consensus 5 ~~~~kYDRQlRlwge~gQ~~le-~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA 83 (523)
T KOG2016|consen 5 EPKTKYDRQLRLWGEEGQAALE-SASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRA 83 (523)
T ss_pred chhhHHHHHHHHHHHHhHhhhh-hceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHH
Confidence 4567899999999999999999 999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHhhCCceEEEEEeccC---ccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEe
Q 013224 97 EVAAKRVMERVSGVNIVPHFCRI---EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 173 (447)
Q Consensus 97 ~~a~~~l~~~np~v~i~~~~~~i---~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~ 173 (447)
++..+.++++||+|+-.+..... -..+.+||++|++|+.+--+.+....+.++| +.+++|++++
T Consensus 84 ~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l-------------~~~~vpll~~ 150 (523)
T KOG2016|consen 84 EATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEIL-------------REANVPLLLT 150 (523)
T ss_pred HHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHH-------------HhcCCceEEE
Confidence 99999999999999876655443 3466899999999999988888888899999 5899999999
Q ss_pred eeccccceEEEEeCCC
Q 013224 174 GTEGFKGHARVIIPGV 189 (447)
Q Consensus 174 g~~g~~G~v~~~~p~~ 189 (447)
-+.|+.|.++..+..+
T Consensus 151 rs~Gl~G~iRI~ikEH 166 (523)
T KOG2016|consen 151 RSYGLAGTIRISIKEH 166 (523)
T ss_pred eeecceEEEEEEeeec
Confidence 9999999999887553
No 47
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.96 E-value=1.3e-28 Score=232.43 Aligned_cols=116 Identities=14% Similarity=0.202 Sum_probs=108.1
Q ss_pred CCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHH
Q 013224 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (447)
Q Consensus 20 ~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a 99 (447)
.+|+||+++||.++|+||+ +++|+|||+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||++++ |+|++||+++
T Consensus 7 ~RYsRQIrLwG~EgQ~KL~-~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaA 84 (287)
T PTZ00245 7 VRYDRQIRLWGKSTQQQLM-HTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARA 84 (287)
T ss_pred HHHhHHHHHhCHHHHHHHh-hCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHH
Confidence 5899999999999999999 9999999999999999999999999999999999999999999999997 6899999999
Q ss_pred HHHHHhhCCceEEEEEeccCccchhhccCCceEEEcccCCHHH
Q 013224 100 AKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEA 142 (447)
Q Consensus 100 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~ 142 (447)
+++++++||.++|+++..++++. .+|++||.+.-+.+.
T Consensus 85 a~~L~eLNP~V~V~~i~~rld~~-----n~fqvvV~~~~~le~ 122 (287)
T PTZ00245 85 LGALQRLNPHVSVYDAVTKLDGS-----SGTRVTMAAVITEED 122 (287)
T ss_pred HHHHHHHCCCcEEEEcccccCCc-----CCceEEEEEcccHHH
Confidence 99999999999999998888653 389999998766553
No 48
>PRK06153 hypothetical protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=238.18 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=129.0
Q ss_pred HHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCcccc-CCCCCCCCC--hHHHHHHHHHHhhC
Q 013224 31 TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQF-LFRMEDVGK--PKAEVAAKRVMERV 107 (447)
Q Consensus 31 ~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~Rqf-Lf~~~diG~--~Ka~~a~~~l~~~n 107 (447)
.+.|++|+ +++|+||||||+||.++..||++||++|+|||+|.|+.|||+||+ +|+++|+|+ +||++++++++++|
T Consensus 168 ~~~q~kL~-~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in 246 (393)
T PRK06153 168 GALSAKLE-GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR 246 (393)
T ss_pred HHHHHHHh-hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC
Confidence 57899999 999999999999999999999999999999999999999999998 679999999 99999999999999
Q ss_pred CceEEEEEeccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEEeC
Q 013224 108 SGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIP 187 (447)
Q Consensus 108 p~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~~p 187 (447)
| .|+++...+++.+.+.++++|+||+|+|+.++|.+||+.|. .+++|||++|.. - .+..
T Consensus 247 ~--~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~-------------~~gIP~Id~G~~----l--~~~~ 305 (393)
T PRK06153 247 R--GIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLE-------------ALGIPFIDVGMG----L--ELSN 305 (393)
T ss_pred C--eEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH-------------HcCCCEEEeeec----c--eecC
Confidence 8 56778888877777788999999999999999999999995 679999999863 1 1113
Q ss_pred C-CCCccccccC
Q 013224 188 G-VTPCFECTIW 198 (447)
Q Consensus 188 ~-~t~c~~C~~~ 198 (447)
+ ...|.+|++.
T Consensus 306 g~l~G~~Rvt~~ 317 (393)
T PRK06153 306 GSLGGILRVTLS 317 (393)
T ss_pred CCcCcEEEEEEe
Confidence 2 2568888863
No 49
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.95 E-value=9.5e-28 Score=224.46 Aligned_cols=144 Identities=27% Similarity=0.393 Sum_probs=132.3
Q ss_pred CCCCCCCccCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHH
Q 013224 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (447)
Q Consensus 20 ~~~~r~~~~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a 99 (447)
.+|.|..+++|+++.++|+ +++|+|||+||+|+.++..|+++|+|+|+|||+|.|+.+|+|||.-....+||++|++++
T Consensus 11 ~rf~~~~~l~G~~~lekl~-~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm 89 (263)
T COG1179 11 QRFGGIARLYGEDGLEKLK-QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVM 89 (263)
T ss_pred HHhhhHHHHcChhHHHHHh-hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHH
Confidence 4688888999999999999 999999999999999999999999999999999999999999998777889999999999
Q ss_pred HHHHHhhCCceEEEEEeccCccch-hhcc-CCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeecc
Q 013224 100 AKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (447)
Q Consensus 100 ~~~l~~~np~v~i~~~~~~i~~~~-~~~~-~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g 177 (447)
+++++.+||.++|.++...+++.+ .+|+ .+||+||||.|++.+...+-..|. ++++|+|.++-.|
T Consensus 90 ~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~-------------~~ki~vIss~Gag 156 (263)
T COG1179 90 KERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCR-------------RNKIPVISSMGAG 156 (263)
T ss_pred HHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHH-------------HcCCCEEeecccc
Confidence 999999999999999999998765 4544 569999999999999999999994 7899999875433
No 50
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-20 Score=181.04 Aligned_cols=133 Identities=22% Similarity=0.295 Sum_probs=122.5
Q ss_pred cCCHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhC
Q 013224 28 EPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV 107 (447)
Q Consensus 28 ~~G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~n 107 (447)
-+|+++|+||+ ++-|+||||||+|+.++-.|+++|+++|.|||+|.|++|-||||...+-+|||.||+.+++++++++.
T Consensus 63 FfGee~m~kl~-~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skia 141 (430)
T KOG2018|consen 63 FFGEEGMEKLT-NSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIA 141 (430)
T ss_pred hhhhhHHHHhc-CcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhC
Confidence 46999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCccch-hh-ccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 108 SGVNIVPHFCRIEDKD-IS-FYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 108 p~v~i~~~~~~i~~~~-~~-~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
|.++|++...-.+..+ ++ ++.+.|+|+||.||+++.--+-++|+ .++++.|.+-
T Consensus 142 Pw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~-------------~~~l~Viss~ 197 (430)
T KOG2018|consen 142 PWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCY-------------NHGLKVISST 197 (430)
T ss_pred ccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHH-------------HcCCceEecc
Confidence 9999999887776544 33 44668999999999999999999994 7899999764
No 51
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.82 E-value=7.1e-20 Score=192.20 Aligned_cols=209 Identities=18% Similarity=0.186 Sum_probs=157.3
Q ss_pred CHHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCc
Q 013224 30 GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG 109 (447)
Q Consensus 30 G~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~ 109 (447)
|....++-+ ++||+|+|+||+|+.++.+|+.+|+++|+.+|.|.+ .|||+| ||+. ++.|++ +||+
T Consensus 120 ~~~rF~~qR-~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~ 184 (637)
T TIGR03693 120 GALKFELSR-NAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDA 184 (637)
T ss_pred chhhhhhhh-cccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCC
Confidence 445555567 999999999999999999999999999999999999 999999 8887 666665 9999
Q ss_pred eEEEEEeccCccchhhccCCceEEEcccC--CHHHHHHHHHHHHhhccccCCCcccccCC---CcEEEeeeccccceEEE
Q 013224 110 VNIVPHFCRIEDKDISFYNDFNIIVLGLD--SIEARSYINAVACSFLEYETDDKPREETI---KPMVDGGTEGFKGHARV 184 (447)
Q Consensus 110 v~i~~~~~~i~~~~~~~~~~~DvVi~~~D--n~~~r~~in~~~~~l~~~~~~~~~~~~~~---~pli~~g~~g~~G~v~~ 184 (447)
++|+.+.....+.-.+.++++|+||...| +..--+|+|++|+ +.+ +|++-+|..++.|-++.
T Consensus 185 v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acv-------------kegk~~IPai~~G~~~liGPlft 251 (637)
T TIGR03693 185 LLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCK-------------EEGKGFIPAICLKQVGLAGPVFQ 251 (637)
T ss_pred CceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHH-------------HcCCCeEEEEEcccceeecceEC
Confidence 99999876444444688899999999999 5566789999996 567 77778888888888765
Q ss_pred EeCCCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhccCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q 013224 185 IIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIP 264 (447)
Q Consensus 185 ~~p~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~~~~~~~d~dd~~~l~~i~~~a~~ra~~~~I~ 264 (447)
|+.++|++|....... .+ +.
T Consensus 252 --PgkTGCWeCa~~RL~e---------------------------------------------------------~~-L~ 271 (637)
T TIGR03693 252 --QHGDECFEAAWHRLHE---------------------------------------------------------SA-LH 271 (637)
T ss_pred --CCCCcHHHHHHHHHHH---------------------------------------------------------Hh-cC
Confidence 9999999996411000 00 00
Q ss_pred CCcccccccccccccccc-ccHHHHHHHHHHHHHHHHHhCCCCC--CcceEEEEcCCCeeEeEeeeecCCCCccCCC
Q 013224 265 GVTYSLTQGVVKNIIPAI-ASTNAIISAACALETLKIASGCSKT--LSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP 338 (447)
Q Consensus 265 ~~~~~~~~gv~~~iiPai-a~t~Aivagl~a~EalK~ltg~~~~--l~n~~~~~~~~~~~~~~~~~~~~p~C~vC~~ 338 (447)
... .. -++ +++.|+++++++.|++|++++..+. ..+++.+|-.+... ....+.|.|.|+ |..
T Consensus 272 ~~~--~s--------~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~-~WH~vvkrPqC~-~~~ 336 (637)
T TIGR03693 272 EEN--SL--------AAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEG-GWHAFIKHPDAS-CEK 336 (637)
T ss_pred CCC--cc--------cccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEcccccc-ccccCCCCCCCC-CCC
Confidence 000 00 112 3368999999999999999975332 24567777665443 245567889998 764
No 52
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=99.73 E-value=4.1e-18 Score=136.87 Aligned_cols=84 Identities=42% Similarity=0.587 Sum_probs=77.5
Q ss_pred EecCCCCCHHHHHHHHhcCCCcceeeceeeecccEEEecCCCChhhhhccccCCchHHhhcccccceeeeccccccccCC
Q 013224 342 IELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKK 421 (447)
Q Consensus 342 ~~~~~~~tl~~l~~~l~~~~~~~~~~~~i~~~~~~ly~~~~~~l~~~~~~~L~k~l~el~~~g~~~~~~~~~~~~v~d~~ 421 (447)
+++++++||++|++.|+.+++|++..|+|+.+++.||+++||.++++++.||+|+|+||+.+| +++ +|||++
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g--~ei------~VtD~~ 72 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDG--EEI------TVTDPT 72 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSS--EEE------EEEETT
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCC--CEE------EEECCC
Confidence 457789999999999999989999999999999999999999999999999999999999999 899 999999
Q ss_pred cceeEEEEEEEe
Q 013224 422 TSCLRKLRVVFR 433 (447)
Q Consensus 422 ~~~~~~~~~~~~ 433 (447)
++.+++|+|+|+
T Consensus 73 lp~~~~~rl~f~ 84 (84)
T PF08825_consen 73 LPISLRLRLKFK 84 (84)
T ss_dssp ESSEEEEEEEEE
T ss_pred CceeEEEEEEeC
Confidence 999999999995
No 53
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.71 E-value=5.8e-17 Score=164.72 Aligned_cols=134 Identities=28% Similarity=0.457 Sum_probs=110.3
Q ss_pred HHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCC---CChHHHHHHHHHHhhCCc
Q 013224 33 LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV---GKPKAEVAAKRVMERVSG 109 (447)
Q Consensus 33 ~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~di---G~~Ka~~a~~~l~~~np~ 109 (447)
-.++++ +.|+|+.|+|.|||.+|++|...||+|||++|..+|..||-.||.||+.+|- |++||++|+++|++++|.
T Consensus 334 nLd~is-~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~ 412 (669)
T KOG2337|consen 334 NLDIIS-QTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPS 412 (669)
T ss_pred chhhhh-cceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcc
Confidence 457889 9999999999999999999999999999999999999999999999999996 599999999999999999
Q ss_pred eEEEEEeccCc-------c-----------chhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEE
Q 013224 110 VNIVPHFCRIE-------D-----------KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMV 171 (447)
Q Consensus 110 v~i~~~~~~i~-------~-----------~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli 171 (447)
++-+.+...|. + .-+.+++..|+|+..+|+.++| |+-.... -..++-.|
T Consensus 413 m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESR-WLPtll~------------a~~~KivI 479 (669)
T KOG2337|consen 413 MEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESR-WLPTLLA------------AAKNKIVI 479 (669)
T ss_pred ccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhh-hhHHHHH------------hhhcceEe
Confidence 98877765542 1 1145789999999999999988 5554442 14456666
Q ss_pred Eeeeccccce
Q 013224 172 DGGTEGFKGH 181 (447)
Q Consensus 172 ~~g~~g~~G~ 181 (447)
+++ .||.-+
T Consensus 480 NaA-LGFDsy 488 (669)
T KOG2337|consen 480 NAA-LGFDSY 488 (669)
T ss_pred eee-ccccee
Confidence 554 455443
No 54
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.65 E-value=1.3e-16 Score=123.29 Aligned_cols=67 Identities=40% Similarity=0.680 Sum_probs=56.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHhCC
Q 013224 238 SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 304 (447)
Q Consensus 238 ~~d~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~gv~~~iiPaia~t~Aivagl~a~EalK~ltg~ 304 (447)
+||+||+.|++||+++|++||+.|||+..++..+++++++|||+++||+|||+|+++.|++|++.++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999999999999999999999999874
No 55
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.20 E-value=3e-11 Score=97.80 Aligned_cols=56 Identities=30% Similarity=0.442 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCCc-ceEEEEcCCCeeEeEeeeecCCCCccCCC
Q 013224 282 IASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFVKDKDCLVCGP 338 (447)
Q Consensus 282 ia~t~Aivagl~a~EalK~ltg~~~~l~-n~~~~~~~~~~~~~~~~~~~~p~C~vC~~ 338 (447)
+.|+.++||+++|+|+||+|+|..+++. .++.||..+..+. ++.+.++|+|++|+.
T Consensus 26 lg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~-~i~~~k~~~C~~C~~ 82 (84)
T PF05237_consen 26 LGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFR-SIRIKKNPDCPVCGP 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEE-EEE----TT-TTT--
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEE-EEecCCCccCcCcCc
Confidence 5678899999999999999999877664 6778898888665 788999999999985
No 56
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.14 E-value=1e-11 Score=87.93 Aligned_cols=43 Identities=44% Similarity=0.985 Sum_probs=33.8
Q ss_pred CCCCccccccCCCCCCCCCCcccccCCcCChhhHHHHHHhhhhhhc
Q 013224 188 GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEV 233 (447)
Q Consensus 188 ~~t~c~~C~~~~~p~~~~~p~ct~~~~p~~~~hci~~a~~~~~~~~ 233 (447)
+.|+||+|..+ +.++.+|+|||+++|+.|+|||+||+ .+|+..
T Consensus 1 ~~Tecy~c~~~--~~~~~~P~CTir~~P~~~~HcI~wAk-~~f~~~ 43 (45)
T PF10585_consen 1 HVTECYECSPD--PPEKSYPVCTIRNFPRTPEHCIEWAK-DLFEEL 43 (45)
T ss_dssp TTS--TTCSGG--GSSSSEEHHHHHTS-SSHHHHHHHHH-HHHHHH
T ss_pred CccccccCCCC--CCCCCCCcchhhcCCCCchHHHHHHH-HHHHHH
Confidence 46899999965 55666999999999999999999999 667654
No 57
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=98.93 E-value=2.9e-09 Score=86.58 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=62.0
Q ss_pred EecC-CCCCHHHHHHHHhcCCCcceeeceeeecccEEEecCCCChhhhhccccCCchHHh-hcccccceeeecccccccc
Q 013224 342 IELD-TSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSD 419 (447)
Q Consensus 342 ~~~~-~~~tl~~l~~~l~~~~~~~~~~~~i~~~~~~ly~~~~~~l~~~~~~~L~k~l~el-~~~g~~~~~~~~~~~~v~d 419 (447)
+.++ ..+||++|++.++ +.++++..|.|+.++++||.+.. +.+..|++|+|++| +++| ++| .|+|
T Consensus 2 v~~d~~~~TL~~lv~~Vl-k~~Lg~~~P~v~~~~~ilyd~de----~~~~~~l~k~L~elgi~~g--s~L------~v~D 68 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVL-KKKLGMNEPDVSVGGTILYDSDE----EEYDDNLPKKLSELGIVNG--SIL------TVDD 68 (87)
T ss_dssp EEE-TTT-BHHHHHHHCC-CCCS--SSEEEEES-EEEE-SSS----SSSTTCTTSBGGGGT--TT---EE------EEEE
T ss_pred EEEechhCcHHHHHHHHH-HhccCCCCCEEEeCCCEEEcCCc----chhhhcccCChhHcCCCCC--CEE------EEEE
Confidence 3444 4789999999988 56899999999999999999642 56788999999999 9999 999 9999
Q ss_pred CCcceeEEEEEEEeccC
Q 013224 420 KKTSCLRKLRVVFRGVD 436 (447)
Q Consensus 420 ~~~~~~~~~~~~~~~~~ 436 (447)
+.+.+.+.|.|.+++..
T Consensus 69 ~~q~~~~~i~i~h~~~~ 85 (87)
T PF14732_consen 69 FDQDFNLEINIKHREEL 85 (87)
T ss_dssp TTTTEEEEEEEEE-SSS
T ss_pred cCCCcEEEEEEEecCcc
Confidence 99998899999888763
No 58
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=98.60 E-value=9.5e-08 Score=83.03 Aligned_cols=81 Identities=21% Similarity=0.305 Sum_probs=58.0
Q ss_pred ceeEecCCCCCHHHHHHHHhcCCCcceeeceeeecccEEEecCCCChhhhhccccCCchHHhhcccccceeeeccccccc
Q 013224 339 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQS 418 (447)
Q Consensus 339 ~~~~~~~~~~tl~~l~~~l~~~~~~~~~~~~i~~~~~~ly~~~~~~l~~~~~~~L~k~l~el~~~g~~~~~~~~~~~~v~ 418 (447)
|+++.++.++||++|++.+. ++|++++.||++|+.+||.++ + .+..++||+++++||++.-.+.++ .
T Consensus 34 WDr~~v~~~~Tl~~li~~~~--~~~~lev~ml~~g~~~LY~~f-~--~~~~~~rl~~~i~elv~~v~k~~~--------~ 100 (125)
T PF09358_consen 34 WDRIEVNGDMTLQELIDYFK--EKYGLEVTMLSQGVSLLYSSF-P--PPKHKERLKMPISELVEEVTKKPI--------P 100 (125)
T ss_dssp T-EEEEES--BHHHHHHHHH--HTTS-EEEEEEETTEEEEETT----HHHHHHHTTSBHHHHHHHHTSS-----------
T ss_pred eeEEEEcCCCCHHHHHHHHH--HHhCceEEEEEeCCEEEEecC-C--hhhhHHHhCCcHHHHHHHhcCCCC--------C
Confidence 99999998999999999995 568999999999999999987 2 346778999999999775422344 2
Q ss_pred cCCcceeEEEEEEEec
Q 013224 419 DKKTSCLRKLRVVFRG 434 (447)
Q Consensus 419 d~~~~~~~~~~~~~~~ 434 (447)
+.. ..+.|.+.+.+
T Consensus 101 ~~~--~~l~l~v~~~d 114 (125)
T PF09358_consen 101 PGQ--KYLVLEVSCED 114 (125)
T ss_dssp TT----EEEEEEEEE-
T ss_pred CCc--eEEEEEEEEeC
Confidence 222 25777888886
No 59
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=98.32 E-value=5.3e-07 Score=84.37 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=72.4
Q ss_pred CHHHHHHHhcCCeEEEEcCchHHHH-HHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 013224 30 GTELRDDLQEYARILVVGAGGLGCE-LLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS 108 (447)
Q Consensus 30 G~~~q~~L~~~~~VlvvG~GglG~e-iak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np 108 (447)
..+.+++|+ +++|.|+|.|+.|++ ++..|+.+|++.+. ..+
T Consensus 96 ~~~a~~~l~-~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~-------------------------------------~~a 137 (193)
T TIGR03882 96 PAAALERLR-QLTVTVLSFGEGGAAALAAALAAAGIRIAP-------------------------------------SEA 137 (193)
T ss_pred HHHHHHHHh-cCcEEEEecCCCcHHHHHHHHHHcCCCccC-------------------------------------CCC
Confidence 477899999 999999999999999 99999999998765 000
Q ss_pred ceEEEEEeccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceEEEE-eC
Q 013224 109 GVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVI-IP 187 (447)
Q Consensus 109 ~v~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v~~~-~p 187 (447)
+.++|+..--....-..+|+.+. ..++||+-....|..+.+.++ .|
T Consensus 138 --------------------~l~vVl~~Dyl~p~L~~~n~~~l-------------~~~~~~l~v~~~~~~~~~gp~~~p 184 (193)
T TIGR03882 138 --------------------DLTVVLTDDYLDPELAAINQRAL-------------AAGRPWLLVKPGGVQPWIGPLFKP 184 (193)
T ss_pred --------------------CEEEEEeCCCCChHHHHHHHHHH-------------HcCCceEEEEeCCceEEECCeecC
Confidence 22333332111123345777774 789999999998888888875 59
Q ss_pred CCCCccccc
Q 013224 188 GVTPCFECT 196 (447)
Q Consensus 188 ~~t~c~~C~ 196 (447)
+.|+|++|+
T Consensus 185 ~~~~c~~c~ 193 (193)
T TIGR03882 185 GKTGCWHCL 193 (193)
T ss_pred CCCcccccC
Confidence 999999995
No 60
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.28 E-value=3.6e-06 Score=74.93 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=96.0
Q ss_pred CCeEEEEcCchHHHHHHHHHH---HhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 40 YARILVVGAGGLGCELLKDLA---LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La---~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
...|.++|||-||--++.+|. +-|..+|.++|...|+..++--- --..-+|.+|++-++ ++.+-.+.-.|++.+
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RLGAKVGEYKVDFIK-RLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--HhCCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence 678999999999999999998 67899999999999999998522 135678999999665 455567788999999
Q ss_pred ccCccchhhccCCceEEEc---ccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEe-eeccc
Q 013224 117 CRIEDKDISFYNDFNIIVL---GLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG-GTEGF 178 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~---~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~-g~~g~ 178 (447)
..++..|..++++ |+|+. +.|..+.-..|-..|. +.++.-|.. |++|.
T Consensus 95 E~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~-------------~rG~~TisT~GVFGi 146 (217)
T COG4015 95 ENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAK-------------ERGIKTISTNGVFGI 146 (217)
T ss_pred ccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHH-------------HcCceEeecCceeec
Confidence 9999989888887 77744 4778887777777884 667766644 34443
No 61
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.94 E-value=3.7e-05 Score=76.23 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=60.8
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
++ ..+|+|+|+||.|..++..|+..|+++|+|+|.+. .|++.+++.+.+.++.+.+....
T Consensus 125 ~~-~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~-------------------~ka~~la~~l~~~~~~~~~~~~~ 184 (284)
T PRK12549 125 AS-LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP-------------------ARAAALADELNARFPAARATAGS 184 (284)
T ss_pred cc-CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH-------------------HHHHHHHHHHHhhCCCeEEEecc
Confidence 45 67999999999999999999999999999998762 59999999998877765543321
Q ss_pred ccCccchhhccCCceEEEcccC
Q 013224 117 CRIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~D 138 (447)
...+.++++|+||+|+-
T Consensus 185 -----~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 185 -----DLAAALAAADGLVHATP 201 (284)
T ss_pred -----chHhhhCCCCEEEECCc
Confidence 11234577999999964
No 62
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.93 E-value=4.3e-05 Score=78.44 Aligned_cols=99 Identities=22% Similarity=0.320 Sum_probs=72.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 120 (447)
.+|+|+|+|++|+.+|.+|++.|.++|++.|.. + ..++++...... ++++..-++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs---------------------~--~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS---------------------K--EKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC---------------------H--HHHHHHHhhccc-cceeEEeccc
Confidence 489999999999999999999999999999832 1 122222222211 6666666665
Q ss_pred cc--hhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeecc
Q 013224 121 DK--DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (447)
Q Consensus 121 ~~--~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g 177 (447)
+. ..++++++|+||+|...+-.+.. -++|. ++++++++.....
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~~i-~ka~i-------------~~gv~yvDts~~~ 102 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDLTI-LKACI-------------KTGVDYVDTSYYE 102 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhHHH-HHHHH-------------HhCCCEEEcccCC
Confidence 43 35889999999999998777644 44553 7889999887554
No 63
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.84 E-value=6.1e-05 Score=66.30 Aligned_cols=78 Identities=31% Similarity=0.386 Sum_probs=57.6
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
.++ +.+|+|+|+||.|..++++|+..|+++|+|+..+ ..|++.+++.+ +...+...
T Consensus 9 ~l~-~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 9 DLK-GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp TGT-TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred CcC-CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence 477 9999999999999999999999999999998732 23777666666 44444443
Q ss_pred eccCccchhhccCCceEEEcccCCH
Q 013224 116 FCRIEDKDISFYNDFNIIVLGLDSI 140 (447)
Q Consensus 116 ~~~i~~~~~~~~~~~DvVi~~~Dn~ 140 (447)
.- .+ ..+.+.++|+||+|+...
T Consensus 65 ~~--~~-~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 65 PL--ED-LEEALQEADIVINATPSG 86 (135)
T ss_dssp EG--GG-HCHHHHTESEEEE-SSTT
T ss_pred eH--HH-HHHHHhhCCeEEEecCCC
Confidence 32 11 225577899999998754
No 64
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.42 E-value=0.0015 Score=61.49 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=58.7
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
|. +.+|+|||.|.+|...++.|...| .+|++|+.+. .+ .+.++.+.-.+....
T Consensus 8 l~-~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~~-------------------~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 8 LS-NKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------TE-------------------NLVKLVEEGKIRWKQ 60 (202)
T ss_pred cC-CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------CH-------------------HHHHHHhCCCEEEEe
Confidence 66 899999999999999999999999 6999997531 10 111111111233322
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
. .+....+.++|+||.|+++.+.-..|-..|
T Consensus 61 ~---~~~~~~l~~adlViaaT~d~elN~~i~~~a 91 (202)
T PRK06718 61 K---EFEPSDIVDAFLVIAATNDPRVNEQVKEDL 91 (202)
T ss_pred c---CCChhhcCCceEEEEcCCCHHHHHHHHHHH
Confidence 2 223445778999999999988877777777
No 65
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.31 E-value=0.00081 Score=66.90 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=56.1
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
++ ..+|+|+|+||+|..++..|+..|+.+|+|++.+.- ...|++.+++.+.+..+.+.+...
T Consensus 124 ~~-~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~- 185 (289)
T PRK12548 124 VK-GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVY- 185 (289)
T ss_pred cC-CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEe-
Confidence 45 678999999999999999999999999999885310 113667777777665555444322
Q ss_pred ccCccc--hhhccCCceEEEcccC
Q 013224 117 CRIEDK--DISFYNDFNIIVLGLD 138 (447)
Q Consensus 117 ~~i~~~--~~~~~~~~DvVi~~~D 138 (447)
++.+. -.+.++.+|+||+|+-
T Consensus 186 -d~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 186 -DLNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred -chhhhhHHHhhhccCCEEEEeCC
Confidence 22221 1234556788888753
No 66
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.10 E-value=0.0016 Score=64.59 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=55.7
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
+. ..+|+|+|+||.|..++-.|+..|+.+|+|+|.+. .||+.+++.+.+..+...+...
T Consensus 125 ~~-~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~- 183 (283)
T PRK14027 125 AK-LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGV- 183 (283)
T ss_pred cC-CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEec-
Confidence 44 57899999999999999999999999999997542 2888888877655443222221
Q ss_pred ccCccchhhccCCceEEEcccC
Q 013224 117 CRIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~D 138 (447)
..... .+....+|+||+|+-
T Consensus 184 -~~~~~-~~~~~~~divINaTp 203 (283)
T PRK14027 184 -DARGI-EDVIAAADGVVNATP 203 (283)
T ss_pred -CHhHH-HHHHhhcCEEEEcCC
Confidence 11110 123457899999864
No 67
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.07 E-value=0.0014 Score=54.78 Aligned_cols=78 Identities=23% Similarity=0.256 Sum_probs=55.4
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
|+ +.+|+|||.|.+|..=++.|..+| .+++++..+. +... ..+++ ..
T Consensus 5 l~-~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~~----------------------------~~i~~--~~ 51 (103)
T PF13241_consen 5 LK-GKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFSE----------------------------GLIQL--IR 51 (103)
T ss_dssp -T-T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHHH----------------------------TSCEE--EE
T ss_pred cC-CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhhh----------------------------hHHHH--Hh
Confidence 66 899999999999999999999999 6999998775 1000 12222 22
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
..+ . +.+.++++|+.|+++.+....+-+.|.
T Consensus 52 ~~~---~-~~l~~~~lV~~at~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 52 REF---E-EDLDGADLVFAATDDPELNEAIYADAR 82 (103)
T ss_dssp SS----G-GGCTTESEEEE-SS-HHHHHHHHHHHH
T ss_pred hhH---H-HHHhhheEEEecCCCHHHHHHHHHHHh
Confidence 222 2 447889999999999888888888883
No 68
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.99 E-value=0.01 Score=56.12 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=60.7
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
|+ +.+|+|||.|.+|..-++.|...|. +++||+.+.- +. +. .+.+. -+|+.+.
T Consensus 7 l~-gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~------------------~~---l~-~l~~~---~~i~~~~ 59 (205)
T TIGR01470 7 LE-GRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE------------------SE---LT-LLAEQ---GGITWLA 59 (205)
T ss_pred cC-CCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC------------------HH---HH-HHHHc---CCEEEEe
Confidence 66 8899999999999999999999995 8999987421 00 11 11111 1445444
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
.... .+.+.++++||.|+++.+....+-..|.
T Consensus 60 ~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~ 91 (205)
T TIGR01470 60 RCFD---ADILEGAFLVIAATDDEELNRRVAHAAR 91 (205)
T ss_pred CCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHH
Confidence 4333 4457899999999999877777777773
No 69
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.94 E-value=0.0023 Score=63.41 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=53.6
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
++ ..+|+|+|+||.|..++..|+..|+.+|+|++.+ ..|++.+++.+.... .+....
T Consensus 123 ~~-~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~ 179 (282)
T TIGR01809 123 LA-GFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLE 179 (282)
T ss_pred cC-CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceecc
Confidence 45 7799999999999999999999999999999743 237777777664331 111111
Q ss_pred ccCccchhhccCCceEEEcccC
Q 013224 117 CRIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~D 138 (447)
.. +...+.+.++|+||+|+-
T Consensus 180 -~~-~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 180 -GD-SGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred -ch-hhhhhcccCCCEEEECCC
Confidence 00 111234568999999965
No 70
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.91 E-value=0.0035 Score=62.39 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=55.0
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
++ ..+|+|+|+||.+..++-.|+..|+.+|+|++.+. -...||+.+++.+....+ ..+....
T Consensus 122 ~~-~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~ 183 (288)
T PRK12749 122 IK-GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD 183 (288)
T ss_pred cC-CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec
Confidence 45 67999999999999999999999999999998431 023488888877754332 2222221
Q ss_pred ccCccc--hhhccCCceEEEcccC
Q 013224 117 CRIEDK--DISFYNDFNIIVLGLD 138 (447)
Q Consensus 117 ~~i~~~--~~~~~~~~DvVi~~~D 138 (447)
+.+. -.+.+.++|+||+|+-
T Consensus 184 --~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 184 --LADQQAFAEALASADILTNGTK 205 (288)
T ss_pred --hhhhhhhhhhcccCCEEEECCC
Confidence 1110 1123457899999863
No 71
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.88 E-value=0.0064 Score=54.97 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=57.3
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
|+ +.+|+|||.|.+|...++.|...|. +++||+.+..+ + +.++ +. ++...
T Consensus 11 l~-~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~------~-------------------l~~l-~~--i~~~~ 60 (157)
T PRK06719 11 LH-NKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK------E-------------------MKEL-PY--ITWKQ 60 (157)
T ss_pred cC-CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH------H-------------------HHhc-cC--cEEEe
Confidence 66 8999999999999999999999996 89999755321 0 0111 11 22222
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
. .+..+.+.++|+||.++|+.+.-..+-..|
T Consensus 61 ~---~~~~~dl~~a~lViaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 61 K---TFSNDDIKDAHLIYAATNQHAVNMMVKQAA 91 (157)
T ss_pred c---ccChhcCCCceEEEECCCCHHHHHHHHHHH
Confidence 2 233445788999999999988776666666
No 72
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.78 E-value=0.003 Score=65.16 Aligned_cols=94 Identities=22% Similarity=0.292 Sum_probs=62.3
Q ss_pred EEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 43 ILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 43 VlvvG~GglG~eiak~La~~Gv-g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
|+|+|+|.+|..+++.|+..+- .++++.|.+.- |++.+++.+ ...+++....++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~-------------------~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE-------------------KAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH-------------------HHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH-------------------HHHHHHhhc----cccceeEEEEecCC
Confidence 7999999999999999999884 48999985432 433333333 23456666666654
Q ss_pred ch--hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEe
Q 013224 122 KD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 173 (447)
Q Consensus 122 ~~--~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~ 173 (447)
.. .++++++|+||+|+... ....+-++|. +.+++++|.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i-------------~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACI-------------EAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHH-------------HHT-EEEES
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHH-------------HhCCCeecc
Confidence 33 57899999999998876 4445667774 789999994
No 73
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.75 E-value=0.0047 Score=61.05 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=53.2
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
+. +.+|+|+|+||+|..+++.|...|+.+|++++.+ ..|++.+++.+....+ +.+ .
T Consensus 121 ~~-~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 121 LK-GKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CC-CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 55 7899999999999999999999999999999753 1366666666653321 222 0
Q ss_pred ccCccchhhccCCceEEEcccC
Q 013224 117 CRIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~D 138 (447)
. ...+.+.++|+||+|+-
T Consensus 177 --~--~~~~~~~~~DivInaTp 194 (278)
T PRK00258 177 --L--ELQEELADFDLIINATS 194 (278)
T ss_pred --c--cchhccccCCEEEECCc
Confidence 1 11245678999999975
No 74
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.60 E-value=0.0036 Score=64.88 Aligned_cols=75 Identities=25% Similarity=0.416 Sum_probs=57.9
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
|. .++|+|||+|-.|.-+|++|+..|+.+|+|+ ||+. -||+.+++.+. .++..+
T Consensus 176 L~-~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~~~l- 229 (414)
T COG0373 176 LK-DKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEAVAL- 229 (414)
T ss_pred cc-cCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----CeeecH-
Confidence 66 8899999999999999999999999999996 5663 37777777775 122211
Q ss_pred ccCccchhhccCCceEEEcccCCHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIE 141 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~ 141 (447)
+.-.+++.++|+||.|+....
T Consensus 230 ----~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 230 ----EELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ----HHHHHhhhhCCEEEEecCCCc
Confidence 122467889999999988643
No 75
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.57 E-value=0.0044 Score=64.74 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=54.0
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
+. +.+|+|+|+|+.|..++++|+..|+.+|+|+... ..||+.+++.+. ...+..+
T Consensus 179 l~-~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~~~~- 233 (414)
T PRK13940 179 IS-SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASAHYL- 233 (414)
T ss_pred cc-CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeEecH-
Confidence 56 7899999999999999999999999999997543 126655555442 1111111
Q ss_pred ccCccchhhccCCceEEEcccCCH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSI 140 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~ 140 (447)
+...+.+.++|+||+|+.+.
T Consensus 234 ----~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 234 ----SELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred ----HHHHHHhccCCEEEECcCCC
Confidence 12246788999999998763
No 76
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.0089 Score=59.20 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=54.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
..+|+|+|+||.+-.++..|+..|+.+|+|++.. ..||+.+++.+.+..+.+.....
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~---- 182 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAAL---- 182 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccc----
Confidence 5789999999999999999999999999998632 34888888888887652222111
Q ss_pred ccchhhccCCceEEEcccC
Q 013224 120 EDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~D 138 (447)
.+ .+-..++|+||+||-
T Consensus 183 ~~--~~~~~~~dliINaTp 199 (283)
T COG0169 183 AD--LEGLEEADLLINATP 199 (283)
T ss_pred cc--cccccccCEEEECCC
Confidence 11 111116899999965
No 77
>PRK04148 hypothetical protein; Provisional
Probab=96.36 E-value=0.031 Score=49.17 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=65.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
+.+|++||+| -|.++|+.|+..|. .++.+|.+.- .+ +.+++. .+.+...++
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV----~~a~~~----~~~~v~dDl 67 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AV----EKAKKL----GLNAFVDDL 67 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HH----HHHHHh----CCeEEECcC
Confidence 4689999999 99999999999996 8999984331 22 222222 256677788
Q ss_pred ccchhhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
.+.+.++++++|+|....-..+....+-+.+.
T Consensus 68 f~p~~~~y~~a~liysirpp~el~~~~~~la~ 99 (134)
T PRK04148 68 FNPNLEIYKNAKLIYSIRPPRDLQPFILELAK 99 (134)
T ss_pred CCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHH
Confidence 78888999999999999999998888888884
No 78
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.30 E-value=0.027 Score=53.90 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=60.4
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
++ +.+|||||.|.++..=++.|..+| .+|+||-++.-+ ... + +. .++. |+.+.
T Consensus 23 ~~-~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~------------------el~---~-l~-~~~~--i~~~~ 75 (223)
T PRK05562 23 SN-KIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK------------------EFL---D-LK-KYGN--LKLIK 75 (223)
T ss_pred CC-CCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH------------------HHH---H-HH-hCCC--EEEEe
Confidence 55 789999999999999999999999 589999765210 000 0 11 1222 44444
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
.. +..+.+.++++||.|+|+.+.-..+-..|.
T Consensus 76 r~---~~~~dl~g~~LViaATdD~~vN~~I~~~a~ 107 (223)
T PRK05562 76 GN---YDKEFIKDKHLIVIATDDEKLNNKIRKHCD 107 (223)
T ss_pred CC---CChHHhCCCcEEEECCCCHHHHHHHHHHHH
Confidence 33 344567899999999999888888888883
No 79
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.28 E-value=0.017 Score=53.76 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=54.5
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
++ +.+++|+|+ |++|..+++.|+..| .++++++.+ ..|++..++.+.+.. ...+...
T Consensus 26 l~-~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 26 LK-GKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CC-CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 56 789999996 999999999999998 489988644 236666666665332 2333332
Q ss_pred eccCccchhhccCCceEEEcccCC
Q 013224 116 FCRIEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 116 ~~~i~~~~~~~~~~~DvVi~~~Dn 139 (447)
...-.+...+.++++|+||+++..
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCCC
Confidence 111111123567889999998764
No 80
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.05 E-value=0.024 Score=50.27 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=31.6
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. ..+|+|+|+|++|..+++.|...|...++++|.+
T Consensus 17 ~~-~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LK-GKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CC-CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 45 7899999999999999999999987789998843
No 81
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.04 E-value=0.013 Score=53.73 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=30.5
Q ss_pred HhcCCeEEEEcCchH-HHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGAGGL-GCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~Ggl-G~eiak~La~~Gvg~i~lvD~ 72 (447)
|. +++|+|||+|.. |..++++|...|+ ++++++.
T Consensus 42 l~-gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 42 LA-GKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CC-CCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 67 899999999985 8889999999998 7999884
No 82
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.96 E-value=0.013 Score=50.81 Aligned_cols=98 Identities=23% Similarity=0.267 Sum_probs=58.4
Q ss_pred eEEEEcC-chHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 42 RILVVGA-GGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 42 ~VlvvG~-GglG~eiak~La~-~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
||.|+|+ |-.|..+++.+.. .|+.=.-.+|...= . +-..|+|. .+......+. +
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~---~------~~g~d~g~--------~~~~~~~~~~-------v 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS---A------KVGKDVGE--------LAGIGPLGVP-------V 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS---T------TTTSBCHH--------HCTSST-SSB-------E
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc---c------cccchhhh--------hhCcCCcccc-------c
Confidence 7999999 9999999999998 66655666665431 0 12334441 1111111122 2
Q ss_pred ccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccc
Q 013224 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~ 178 (447)
.+.-.+.++.+|+|||.+ ++++-...-+.|. ++++|+|- ||.|+
T Consensus 58 ~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~-------------~~g~~~Vi-GTTG~ 101 (124)
T PF01113_consen 58 TDDLEELLEEADVVIDFT-NPDAVYDNLEYAL-------------KHGVPLVI-GTTGF 101 (124)
T ss_dssp BS-HHHHTTH-SEEEEES--HHHHHHHHHHHH-------------HHT-EEEE-E-SSS
T ss_pred chhHHHhcccCCEEEEcC-ChHHhHHHHHHHH-------------hCCCCEEE-ECCCC
Confidence 233456677799999999 5666656666663 67999994 55565
No 83
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.94 E-value=0.032 Score=49.44 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=52.1
Q ss_pred CeEEEEcC-chHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCc--eEEEEEe
Q 013224 41 ARILVVGA-GGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG--VNIVPHF 116 (447)
Q Consensus 41 ~~VlvvG~-GglG~eiak~La~~Gvg-~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~--v~i~~~~ 116 (447)
.||.|||+ |.+|+.++..|+..|+. +|.|+|.+. .|++.-+.-+....+. ..+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhccccccccc
Confidence 38999999 99999999999999985 599998432 2555555555554322 3333333
Q ss_pred ccCccchhhccCCceEEEcccCC
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn 139 (447)
...+-++++|+||.+...
T Consensus 62 -----~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 62 -----GDYEALKDADIVVITAGV 79 (141)
T ss_dssp -----SSGGGGTTESEEEETTST
T ss_pred -----ccccccccccEEEEeccc
Confidence 234557899999887543
No 84
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.93 E-value=0.026 Score=56.60 Aligned_cols=72 Identities=28% Similarity=0.442 Sum_probs=50.9
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCC----ceEEEEEe
Q 013224 42 RILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS----GVNIVPHF 116 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg-~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np----~v~i~~~~ 116 (447)
||.|+|+|++|+.++..|+..|+. +|.++|.+. .|++..+.-+....+ .+.+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~-------------------~~~~~~a~dL~~~~~~~~~~~~i~~-- 60 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE-------------------EKAEGEALDLEDALAFLPSPVKIKA-- 60 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------chhhHhHhhHHHHhhccCCCeEEEc--
Confidence 899999999999999999999985 899998532 245555555554421 222321
Q ss_pred ccCccchhhccCCceEEEcccCC
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn 139 (447)
. ..+-++++|+||.++..
T Consensus 61 ~-----~~~~l~~aDIVIitag~ 78 (306)
T cd05291 61 G-----DYSDCKDADIVVITAGA 78 (306)
T ss_pred C-----CHHHhCCCCEEEEccCC
Confidence 1 12336899999999775
No 85
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.89 E-value=0.029 Score=58.95 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=32.3
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
++ +.+|+|+|+|++|.++|+.|+..|. +++++|.+.
T Consensus 3 ~~-~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 3 LK-GKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred cC-CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 45 7899999999999999999999996 799998754
No 86
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.87 E-value=0.05 Score=46.68 Aligned_cols=96 Identities=23% Similarity=0.298 Sum_probs=57.9
Q ss_pred eEEEEc-CchHHHHHHHHHHHhC-CCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 42 RILVVG-AGGLGCELLKDLALSG-FKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~G-vg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
||.||| .|-+|.++++.|...- +.-+.++.... ..|+.=+.... ......++....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~~~~~~~----~~~~~~~~~~~~--- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKPLSEVFP----HPKGFEDLSVED--- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSBHHHTTG----GGTTTEEEBEEE---
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCeeehhcc----ccccccceeEee---
Confidence 799999 9999999999999732 22233333221 24543222111 111112222222
Q ss_pred ccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
...+.+++.|+||.|+++-.++.+...+. +.++++||.+.
T Consensus 59 --~~~~~~~~~Dvvf~a~~~~~~~~~~~~~~--------------~~g~~ViD~s~ 98 (121)
T PF01118_consen 59 --ADPEELSDVDVVFLALPHGASKELAPKLL--------------KAGIKVIDLSG 98 (121)
T ss_dssp --TSGHHHTTESEEEE-SCHHHHHHHHHHHH--------------HTTSEEEESSS
T ss_pred --cchhHhhcCCEEEecCchhHHHHHHHHHh--------------hCCcEEEeCCH
Confidence 23344589999999999988888887775 56888888753
No 87
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.85 E-value=0.024 Score=51.34 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=63.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc--
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR-- 118 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~-- 118 (447)
.+|.+||+|..|+.++++|+.+|+ ++++.|.+.-....+..+ |-..+...++.+++. ++-+......
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 489999999999999999999997 788888543111111111 111111222222222 2333332221
Q ss_pred Ccc---c--hhhccCCceEEEcc-cCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccc-----cceEEEEe
Q 013224 119 IED---K--DISFYNDFNIIVLG-LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF-----KGHARVII 186 (447)
Q Consensus 119 i~~---~--~~~~~~~~DvVi~~-~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~-----~G~v~~~~ 186 (447)
+.+ . -...+..-.+||++ +-+++..+.+.+.+. ..++.++++.+.|. .|....+.
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~-------------~~g~~~vdapV~Gg~~~a~~g~l~~~~ 136 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLA-------------AKGVRYVDAPVSGGPPGAEEGTLTIMV 136 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHH-------------HTTEEEEEEEEESHHHHHHHTTEEEEE
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhh-------------hccceeeeeeeecccccccccceEEEc
Confidence 111 0 12223445667666 445666666776663 56788888887765 45544444
No 88
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.066 Score=57.22 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=77.2
Q ss_pred hhHHhhccCCCCCCCCccCCHHHHHHHhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCC
Q 013224 11 DLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRME 89 (447)
Q Consensus 11 ~~~~~l~~~~~~~r~~~~~G~~~q~~L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~ 89 (447)
.++.+|.|..--.+ =...++.+. +++|+|-|+ |++|+|+++.++..+.++|.++|.|.
T Consensus 227 ~ieDLLgR~pV~~d-----~~~i~~~~~-gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E--------------- 285 (588)
T COG1086 227 EIEDLLGRPPVALD-----TELIGAMLT-GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE--------------- 285 (588)
T ss_pred CHHHHhCCCCCCCC-----HHHHHhHcC-CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch---------------
Confidence 55666666432111 155677788 999999995 56999999999999999999998665
Q ss_pred CCCChHHHHHHHHHHhhCCceEEEEEeccCccch--hhccCC--ceEEEcc
Q 013224 90 DVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD--ISFYND--FNIIVLG 136 (447)
Q Consensus 90 diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~--~~~~~~--~DvVi~~ 136 (447)
+|-......+++..|..++.++-+++.+.. ...+++ .|+|+-|
T Consensus 286 ----~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 286 ----YKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred ----HHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 355567778888889999999999998754 455666 7888765
No 89
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.73 E-value=0.042 Score=55.21 Aligned_cols=82 Identities=26% Similarity=0.408 Sum_probs=56.4
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
+. ..+|+|+|+|.+|..++++|...|..+|+++|.+. .|+..+++.+. . .+...
T Consensus 176 l~-~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~- 229 (311)
T cd05213 176 LK-GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG----G-NAVPL- 229 (311)
T ss_pred cc-CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC----C-eEEeH-
Confidence 46 89999999999999999999998999999998542 34444444432 1 21111
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINA 148 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~ 148 (447)
+...+.+.++|+||.|+.+......+..
T Consensus 230 ----~~~~~~l~~aDvVi~at~~~~~~~~~~~ 257 (311)
T cd05213 230 ----DELLELLNEADVVISATGAPHYAKIVER 257 (311)
T ss_pred ----HHHHHHHhcCCEEEECCCCCchHHHHHH
Confidence 1123456789999999988766333333
No 90
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.65 E-value=0.032 Score=56.24 Aligned_cols=75 Identities=25% Similarity=0.299 Sum_probs=51.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCce-EEEEEec
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV-NIVPHFC 117 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg-~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v-~i~~~~~ 117 (447)
..||.|||+|.+|+.++..|+..|+. +|.|+|- -+.|++..+.-+....|.. ++.....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~ 66 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG 66 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence 56999999999999999999999985 7999984 2335555555565554321 2222221
Q ss_pred cCccchhhccCCceEEEcccC
Q 013224 118 RIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 118 ~i~~~~~~~~~~~DvVi~~~D 138 (447)
+.+-++++|+||.+-.
T Consensus 67 -----~~~~~~~adivIitag 82 (315)
T PRK00066 67 -----DYSDCKDADLVVITAG 82 (315)
T ss_pred -----CHHHhCCCCEEEEecC
Confidence 2334789999988644
No 91
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=95.65 E-value=0.037 Score=52.71 Aligned_cols=76 Identities=25% Similarity=0.405 Sum_probs=58.4
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
.++++++| +||+|-+++|.|...|+..+.|.|. .+. ..+...|++.||.+++..+..+
T Consensus 5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~---------------~En------~~a~akL~ai~p~~~v~F~~~D 63 (261)
T KOG4169|consen 5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS---------------EEN------PEAIAKLQAINPSVSVIFIKCD 63 (261)
T ss_pred CceEEEecCCchhhHHHHHHHHHcCchheeehhh---------------hhC------HHHHHHHhccCCCceEEEEEec
Confidence 56777776 9999999999999999987777542 111 3356779999999999999999
Q ss_pred Cccch---------hhccCCceEEEcc
Q 013224 119 IEDKD---------ISFYNDFNIIVLG 136 (447)
Q Consensus 119 i~~~~---------~~~~~~~DvVi~~ 136 (447)
+.+.. ..-|...|++|+.
T Consensus 64 Vt~~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 64 VTNRGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred cccHHHHHHHHHHHHHHhCceEEEEcc
Confidence 87522 2335667999987
No 92
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.1 Score=50.02 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=60.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 120 (447)
.+++|+|+|-+|..+|+.|+..|- ++.+||.|.- + +.+.+.. .....++..+-.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~-------------------~---~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE-------------------R---VEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH-------------------H---HHHHhhh---hcceEEEEecCC
Confidence 379999999999999999999995 7888886541 1 1222221 123344444433
Q ss_pred cch---hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEe
Q 013224 121 DKD---ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 173 (447)
Q Consensus 121 ~~~---~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~ 173 (447)
+.. ..-+.++|+++.++++-+.-..+-.++. ...++|-+.+
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~------------~~~gv~~via 98 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLAL------------KEFGVPRVIA 98 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHH------------HhcCCCcEEE
Confidence 322 2236789999999998665555544443 1357777655
No 93
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.58 E-value=0.026 Score=44.57 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=39.9
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV 107 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~n 107 (447)
||+|||.|-+|+|+|..|+..|. ++++++...- + . ......-++.+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~-~-~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------L-L-PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------S-S-TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------h-h-hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 8999885442 1 1 2334444566667777764
No 94
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.58 E-value=0.016 Score=55.55 Aligned_cols=38 Identities=29% Similarity=0.498 Sum_probs=35.0
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCc
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDR 74 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg--~i~lvD~D~ 74 (447)
.++ +.+|+|+|+|+.|..+++.|+..|+. +|.|+|.+-
T Consensus 22 ~l~-~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIE-EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred Ccc-CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 477 88999999999999999999999999 999999773
No 95
>PLN00203 glutamyl-tRNA reductase
Probab=95.45 E-value=0.034 Score=59.74 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=52.9
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
|. ..+|+|||+|.+|..++++|...|+.+|++++.+ ..|++.+++.+ +++.+....
T Consensus 264 l~-~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~ 319 (519)
T PLN00203 264 HA-SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKP 319 (519)
T ss_pred CC-CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeec
Confidence 44 6899999999999999999999999999998643 12444444333 233332211
Q ss_pred ccCccchhhccCCceEEEcccCCH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSI 140 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~ 140 (447)
. +...+.+.++|+||.|+.+.
T Consensus 320 --~-~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 320 --L-DEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred --H-hhHHHHHhcCCEEEEccCCC
Confidence 1 12245678999999997653
No 96
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.43 E-value=0.038 Score=49.76 Aligned_cols=90 Identities=21% Similarity=0.325 Sum_probs=53.7
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
||.|+|+|..|+.+|..|+..| .++++...|.=....++.+-- -....|+.++... -.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~-----------------n~~~~~~~~l~~~-i~~t~ 61 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ-----------------NPKYLPGIKLPEN-IKATT 61 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS-----------------ETTTSTTSBEETT-EEEES
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC-----------------CCCCCCCcccCcc-ccccc
Confidence 7999999999999999999999 588887765411111111000 0001223222221 11222
Q ss_pred chhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 122 KDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 122 ~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
...+.+++.|+||.++-+..-|..+.++.
T Consensus 62 dl~~a~~~ad~IiiavPs~~~~~~~~~l~ 90 (157)
T PF01210_consen 62 DLEEALEDADIIIIAVPSQAHREVLEQLA 90 (157)
T ss_dssp SHHHHHTT-SEEEE-S-GGGHHHHHHHHT
T ss_pred CHHHHhCcccEEEecccHHHHHHHHHHHh
Confidence 33467889999999999988887777665
No 97
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.43 E-value=0.031 Score=53.03 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=59.7
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc-cCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR-IEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~-Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
|. +++|+|||.|.+|..=++.|..+|. +++++-.+. -+..++..+ + ++...
T Consensus 10 l~-~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~~~el~~~~~~-----------------------~---~i~~~ 61 (210)
T COG1648 10 LE-GKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEFEPELKALIEE-----------------------G---KIKWI 61 (210)
T ss_pred cC-CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCccHHHHHHHHh-----------------------c---Ccchh
Confidence 66 8999999999999999999999995 899986554 111111111 1 12222
Q ss_pred eccCccchhhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 116 ~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
. .++..+.+..+++||.|+|+.+.-..+-..|.
T Consensus 62 ~---~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~ 94 (210)
T COG1648 62 E---REFDAEDLDDAFLVIAATDDEELNERIAKAAR 94 (210)
T ss_pred h---cccChhhhcCceEEEEeCCCHHHHHHHHHHHH
Confidence 2 23445566679999999999888888888884
No 98
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.38 E-value=0.054 Score=54.39 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=49.8
Q ss_pred eEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCC---ceEEEEEec
Q 013224 42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS---GVNIVPHFC 117 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gv-g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np---~v~i~~~~~ 117 (447)
||.|||+|.+|+.+|..|+..|+ ++|.|+|- -+.|++.-+.-|....+ ..+++.+..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEEC
Confidence 68999999999999999999998 67999983 23355555555554332 112332222
Q ss_pred cCccchhhccCCceEEEcccC
Q 013224 118 RIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 118 ~i~~~~~~~~~~~DvVi~~~D 138 (447)
+.+-++++|+||-+..
T Consensus 62 -----~y~~~~~aDivvitaG 77 (307)
T cd05290 62 -----DYDDCADADIIVITAG 77 (307)
T ss_pred -----CHHHhCCCCEEEECCC
Confidence 2456789999987644
No 99
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.16 E-value=0.045 Score=57.39 Aligned_cols=83 Identities=22% Similarity=0.323 Sum_probs=55.3
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
+. ..+|+|+|+|++|..+++.|...|+.+|+++|.+. .|+...++.+. ..+...
T Consensus 180 ~~-~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~g-----~~~~~~- 233 (423)
T PRK00045 180 LS-GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEFG-----GEAIPL- 233 (423)
T ss_pred cc-CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHcC-----CcEeeH-
Confidence 56 78999999999999999999999999999987542 24443333321 111111
Q ss_pred ccCccchhhccCCceEEEcccCCHH---HHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIE---ARSYINAV 149 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~---~r~~in~~ 149 (447)
+...+.+.++|+||+|+.+.. ...++...
T Consensus 234 ----~~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~ 265 (423)
T PRK00045 234 ----DELPEALAEADIVISSTGAPHPIIGKGMVERA 265 (423)
T ss_pred ----HHHHHHhccCCEEEECCCCCCcEEcHHHHHHH
Confidence 112345678999999987533 34455443
No 100
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.13 E-value=0.069 Score=53.95 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=30.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|-+|+.+|..++.+|+ .++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 589999999999999999999997 899999654
No 101
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.09 E-value=0.095 Score=51.48 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=49.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
..+|+|+|+||+|..++..|+..|. +++++|.+ ..|++.+++.+.+.. . +.... .
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~~-~--~~~~~--~ 171 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRYG-E--IQAFS--M 171 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhcC-c--eEEec--h
Confidence 6789999999999999999999996 89998742 236666666664432 1 11111 1
Q ss_pred ccchhhccCCceEEEcccCC
Q 013224 120 EDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn 139 (447)
. .....++|+||+|+-.
T Consensus 172 ~---~~~~~~~DivInatp~ 188 (270)
T TIGR00507 172 D---ELPLHRVDLIINATSA 188 (270)
T ss_pred h---hhcccCccEEEECCCC
Confidence 1 1123578999999753
No 102
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.03 E-value=0.097 Score=51.92 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=30.4
Q ss_pred HHhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 36 DLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 36 ~L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.+. +.+|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 13 ~~~-~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~ 49 (306)
T PRK06197 13 DQS-GRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRN 49 (306)
T ss_pred cCC-CCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 466 789999995 9999999999999997 67777654
No 103
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.03 E-value=0.1 Score=52.81 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=31.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..||.|||+|.+|+.++..|+..|+..|.|+|-+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 6799999999999999999999998679999853
No 104
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.93 E-value=0.083 Score=52.47 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=30.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|..|+.+|.+|+++|+ .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999997 799999654
No 105
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.92 E-value=0.1 Score=52.45 Aligned_cols=74 Identities=26% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~-~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..+|+|+|+|+.|...++.+.+ .|+.+|++.+.+ ..|++..++.+++.. ..+.+.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g--~~~~~~--- 180 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQG--FDAEVV--- 180 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcC--CceEEe---
Confidence 6899999999999999997765 688899998633 347777777776542 223321
Q ss_pred CccchhhccCCceEEEcccCC
Q 013224 119 IEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn 139 (447)
+...+.++++|+|+.|+.+
T Consensus 181 --~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 --TDLEAAVRQADIISCATLS 199 (314)
T ss_pred --CCHHHHHhcCCEEEEeeCC
Confidence 2234567899999999885
No 106
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.65 E-value=0.097 Score=52.21 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=67.0
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhh-CCceEEEEEecc-C
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVPHFCR-I 119 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~-i 119 (447)
+|.+||+|.+|..++++|+..|. ++.+.|.+.-....+. +.|-..+....+.+... ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 79999999999999999999996 6888887642221111 11211111222333332 355555554433 1
Q ss_pred -ccc---hhhccCCceEEEccc-CCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccc
Q 013224 120 -EDK---DISFYNDFNIIVLGL-DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (447)
Q Consensus 120 -~~~---~~~~~~~~DvVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~ 178 (447)
.+. -...++.-++||++. -+...-+.+.+.+ ...++.++++.+.|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~-------------~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELL-------------AEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHH-------------HHcCCEEEeCCCCcC
Confidence 111 122344557888873 3444444455555 267889999988875
No 107
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.62 E-value=0.041 Score=44.73 Aligned_cols=78 Identities=18% Similarity=0.391 Sum_probs=49.0
Q ss_pred eEEEEcCchHHHHHHHHHHHhCC--CeEEEE-eCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 42 RILVVGAGGLGCELLKDLALSGF--KNLEVI-DMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gv--g~i~lv-D~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
||.+||+|.+|..+++.|+..|+ .+|.++ +.+. .|++ .+.+..+ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~-------------------~~~~----~~~~~~~-~~~~~---- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP-------------------EKAA----ELAKEYG-VQATA---- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH-------------------HHHH----HHHHHCT-TEEES----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH-------------------HHHH----HHHHhhc-ccccc----
Confidence 68999999999999999999995 355544 4221 1222 2223332 12211
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHH
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAV 149 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~ 149 (447)
..+.+.++..|+||.|+........+...
T Consensus 53 --~~~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 53 --DDNEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp --EEHHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred --CChHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 13456677899999999887766666655
No 108
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.14 Score=54.43 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=34.5
Q ss_pred CCHHHHHH-HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 29 PGTELRDD-LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 29 ~G~~~q~~-L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+|.+.|.. +. ..+|+|+|+|++|.++|..|...|. +++++|..
T Consensus 5 ~~~~~~~~~~~-~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 5 PGLTSWHSDWQ-GLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cchhhcccCcC-CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 44444433 34 6799999999999999999999997 69999854
No 109
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.53 E-value=0.16 Score=51.39 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=55.4
Q ss_pred CCeEEEEcCchHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La-~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..+++|+|+|+.|-..++.|. ..|+.+|+|.+.+ ..|++..++.+.+..+ +++...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~--- 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAA--- 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEe---
Confidence 468999999999999999997 5788999998642 2478888888765432 344332
Q ss_pred CccchhhccCCceEEEcccCC
Q 013224 119 IEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn 139 (447)
+...+.++++|+|+.|+-+
T Consensus 186 --~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 186 --TDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred --CCHHHHhccCCEEEEecCC
Confidence 1234556899999999875
No 110
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.51 E-value=0.15 Score=51.05 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=54.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~-~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..+|+|+|+|+.|...++.+.. .|+.+|.+.|.+ ..|++..++.+++... .+. .
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~--~-- 179 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE--P-- 179 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--E--
Confidence 6899999999999999999974 688889988754 3478888888875432 222 1
Q ss_pred CccchhhccCCceEEEcccCC
Q 013224 119 IEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn 139 (447)
+...+.++++|+|+.|+-+
T Consensus 180 --~~~~~av~~aDiVitaT~s 198 (304)
T PRK07340 180 --LDGEAIPEAVDLVVTATTS 198 (304)
T ss_pred --CCHHHHhhcCCEEEEccCC
Confidence 2234567899999999875
No 111
>PLN02602 lactate dehydrogenase
Probab=94.50 E-value=0.16 Score=51.98 Aligned_cols=73 Identities=14% Similarity=0.303 Sum_probs=50.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCC---ceEEEEEe
Q 013224 41 ARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS---GVNIVPHF 116 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gv-g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np---~v~i~~~~ 116 (447)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-+ +.|++..+.-|....| .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN-------------------PDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------CchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 579999841 2344444444444332 2334321
Q ss_pred ccCccchhhccCCceEEEcccC
Q 013224 117 CRIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~D 138 (447)
.+.+.++++|+||.+-.
T Consensus 98 -----~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 -----TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred -----CCHHHhCCCCEEEECCC
Confidence 12344889999988744
No 112
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.47 E-value=0.25 Score=57.16 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=51.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCC-C------------eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhh
Q 013224 40 YARILVVGAGGLGCELLKDLALSGF-K------------NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER 106 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gv-g------------~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~ 106 (447)
..+|+|+|+|.+|..++.+|+..+- . .++|.|.+ ..+++.+++.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~---- 625 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG---- 625 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh----
Confidence 5699999999999999999997642 2 25555433 2244433332
Q ss_pred CCceEEEEEeccCccc--hhhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 107 VSGVNIVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 107 np~v~i~~~~~~i~~~--~~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
.|+++ +...++.+. -.++++++|+||+|+-.. .-..+-..|.
T Consensus 626 ~~~~~--~v~lDv~D~e~L~~~v~~~DaVIsalP~~-~H~~VAkaAi 669 (1042)
T PLN02819 626 IENAE--AVQLDVSDSESLLKYVSQVDVVISLLPAS-CHAVVAKACI 669 (1042)
T ss_pred cCCCc--eEEeecCCHHHHHHhhcCCCEEEECCCch-hhHHHHHHHH
Confidence 24332 222223332 234567899999998763 2234555553
No 113
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=94.45 E-value=0.13 Score=52.10 Aligned_cols=100 Identities=19% Similarity=0.106 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCce
Q 013224 31 TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV 110 (447)
Q Consensus 31 ~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v 110 (447)
.-.-..+. .++|.|+|+|+||..+|+.|...| ..|.--. |+ -..++ .+.+ .+..
T Consensus 154 ~~~g~~~~-gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~----------r~-------~~~~~--~~~~----~~~~- 207 (336)
T KOG0069|consen 154 WPLGYDLE-GKTVGILGLGRIGKAIAKRLKPFG-CVILYHS----------RT-------QLPPE--EAYE----YYAE- 207 (336)
T ss_pred cccccccc-CCEEEEecCcHHHHHHHHhhhhcc-ceeeeec----------cc-------CCchh--hHHH----hccc-
Confidence 33345677 899999999999999999999855 3333221 11 11111 1111 1111
Q ss_pred EEEEEeccCccchhhccCCceEEE-cccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 111 NIVPHFCRIEDKDISFYNDFNIIV-LGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 111 ~i~~~~~~i~~~~~~~~~~~DvVi-~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
...-++++.++|+|+ +|-.+.+++..+|+...... +.+.-+++.+-
T Consensus 208 ---------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~m----------k~g~vlVN~aR 254 (336)
T KOG0069|consen 208 ---------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKM----------KDGAVLVNTAR 254 (336)
T ss_pred ---------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhc----------CCCeEEEeccc
Confidence 122356778889874 55788999999999886432 44666776653
No 114
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.40 E-value=0.079 Score=42.59 Aligned_cols=36 Identities=36% Similarity=0.443 Sum_probs=33.3
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. ..+++|+|+|+.|..++..|...|..++.+.|.|
T Consensus 21 ~~-~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd 56 (86)
T cd05191 21 LK-GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD 56 (86)
T ss_pred CC-CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 66 8899999999999999999999988899999983
No 115
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=94.39 E-value=0.078 Score=52.70 Aligned_cols=41 Identities=37% Similarity=0.613 Sum_probs=32.6
Q ss_pred EEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccc
Q 013224 43 ILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQ 83 (447)
Q Consensus 43 VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~Rq 83 (447)
|||-| +|.+|+|+++.|+..|..+|.++|.|--.+.++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHH
Confidence 67887 788999999999999999999999887655555544
No 116
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.36 E-value=0.23 Score=49.66 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=28.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 489999999999999999999997 78898854
No 117
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.34 E-value=0.25 Score=49.43 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=44.6
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
|+ ..+++|.| .||||.++++.|+..|. ++.+++.+. .|++.+.+.+.+.+|..++..+
T Consensus 12 l~-gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 12 LS-GKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred cC-CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEE
Confidence 56 78899999 68899999999999996 777776432 2445555555555555555555
Q ss_pred eccCcc
Q 013224 116 FCRIED 121 (447)
Q Consensus 116 ~~~i~~ 121 (447)
..++.+
T Consensus 71 ~~Dl~d 76 (313)
T PRK05854 71 ALDLSS 76 (313)
T ss_pred EecCCC
Confidence 555543
No 118
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.27 E-value=0.12 Score=52.13 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=50.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCc---eEEEEE
Q 013224 40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG---VNIVPH 115 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gv-g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~---v~i~~~ 115 (447)
..||.|||+|.+|+.+|..|+..|. .+|.|+|-. +.|++..+.-|....|. .+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 5799999999999999999999998 469999842 22555555555554432 233321
Q ss_pred eccCccchhhccCCceEEEcccC
Q 013224 116 FCRIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 116 ~~~i~~~~~~~~~~~DvVi~~~D 138 (447)
.+.+-++++|+||.+..
T Consensus 64 ------~dy~~~~~adivvitaG 80 (312)
T cd05293 64 ------KDYSVTANSKVVIVTAG 80 (312)
T ss_pred ------CCHHHhCCCCEEEECCC
Confidence 12234789999988543
No 119
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.29 Score=47.17 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=46.2
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
|+ +..++|.|+ ||||.++++.|+..|. ++.+++.+. .+.+.+++.+.+..|..++..+
T Consensus 6 l~-~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 64 (265)
T PRK07062 6 LE-GRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAA 64 (265)
T ss_pred cC-CCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 55 788999996 7899999999999997 577877542 2444555666666666666666
Q ss_pred eccCcc
Q 013224 116 FCRIED 121 (447)
Q Consensus 116 ~~~i~~ 121 (447)
..++.+
T Consensus 65 ~~D~~~ 70 (265)
T PRK07062 65 RCDVLD 70 (265)
T ss_pred EecCCC
Confidence 666553
No 120
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=94.26 E-value=0.18 Score=50.73 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=62.3
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
..+. ..+|.|||+|.+|.++++.|...|+ ++..+|... + .. +.+. .
T Consensus 132 ~~l~-g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~-----~~-----------------~~~~--~ 177 (312)
T PRK15469 132 YHRE-DFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------K-----SW-----------------PGVQ--S 177 (312)
T ss_pred CCcC-CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------C-----CC-----------------CCce--e
Confidence 3577 8999999999999999999999998 677777421 0 00 0000 0
Q ss_pred EeccCccchhhccCCceEEEccc-CCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 115 HFCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 115 ~~~~i~~~~~~~~~~~DvVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
.. . ...-.++++++|+|+.++ .+.+++..+|+-.... .+.+.-+|+.|
T Consensus 178 ~~-~-~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~----------mk~ga~lIN~a 226 (312)
T PRK15469 178 FA-G-REELSAFLSQTRVLINLLPNTPETVGIINQQLLEQ----------LPDGAYLLNLA 226 (312)
T ss_pred ec-c-cccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhc----------CCCCcEEEECC
Confidence 00 0 112356788999998875 4678898898755432 24456677775
No 121
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.25 E-value=0.18 Score=52.79 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=32.5
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+. ..+|+|+|+|.+|..+++.|...|+ +++++|.|.
T Consensus 210 l~-Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IA-GKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CC-CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 46 8899999999999999999999998 799998654
No 122
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.18 E-value=0.31 Score=49.41 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=61.6
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
.|+ ..+|.|||+|.+|..+|+.|...|. ++..+|...- +.. ..+ .
T Consensus 143 ~l~-g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~~---~~~-------~---- 187 (330)
T PRK12480 143 PVK-NMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KDL---DFL-------T---- 187 (330)
T ss_pred ccC-CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hhh---hhh-------h----
Confidence 588 8999999999999999999999997 7888885420 000 000 0
Q ss_pred eccCccchhhccCCceEEEcccCC-HHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 116 FCRIEDKDISFYNDFNIIVLGLDS-IEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 116 ~~~i~~~~~~~~~~~DvVi~~~Dn-~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
......+.++++|+|+.++-. .+++..+++..... .+.+..+|+++
T Consensus 188 ---~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~----------mk~gavlIN~a 234 (330)
T PRK12480 188 ---YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDH----------VKKGAILVNAA 234 (330)
T ss_pred ---ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhc----------CCCCcEEEEcC
Confidence 111234678899999888654 45777787665422 13466677775
No 123
>PRK09242 tropinone reductase; Provisional
Probab=94.17 E-value=0.3 Score=46.81 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=47.6
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
+. +.+++|+|+ ||+|.++++.|+..|. ++.+++.+. .+.+...+.+...+|+.++..+
T Consensus 7 ~~-~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 7 LD-GQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA-------------------DALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred cC-CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEEEE
Confidence 56 789999995 8999999999999997 688877431 2444556666666677777777
Q ss_pred eccCcc
Q 013224 116 FCRIED 121 (447)
Q Consensus 116 ~~~i~~ 121 (447)
..++.+
T Consensus 66 ~~Dl~~ 71 (257)
T PRK09242 66 AADVSD 71 (257)
T ss_pred ECCCCC
Confidence 766654
No 124
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.11 E-value=0.32 Score=48.56 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=29.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gv-g~i~lvD~D 73 (447)
..+|+|||+|.+|..+++.|...|. .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4689999999999999999999997 478888854
No 125
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.04 E-value=0.14 Score=50.97 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=28.7
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+|.|||+|.+|..++.+|+..|. ++.+.|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999996 688888764
No 126
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.01 E-value=0.046 Score=48.31 Aligned_cols=81 Identities=15% Similarity=0.339 Sum_probs=49.6
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe------
Q 013224 43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF------ 116 (447)
Q Consensus 43 VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~------ 116 (447)
|+|+|+|++|+.+|-.|..+|. ++++++... .... +++. .+.++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~-----------------------~~~~--g~~~~~~~~~~~~~ 53 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEA-----------------------IKEQ--GLTITGPDGDETVQ 53 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHH-----------------------HHHH--CEEEEETTEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHh-----------------------hhhe--eEEEEecccceecc
Confidence 7899999999999999999886 688877433 2222 2221 12221111
Q ss_pred -ccCccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 117 -CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 117 -~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
...........+.+|+||.|+=+......+..+.
T Consensus 54 ~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~ 88 (151)
T PF02558_consen 54 PPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLK 88 (151)
T ss_dssp EEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHC
T ss_pred cccccCcchhccCCCcEEEEEecccchHHHHHHHh
Confidence 0000011234578999999998888777666643
No 127
>PRK08618 ornithine cyclodeaminase; Validated
Probab=93.99 E-value=0.24 Score=50.10 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=54.9
Q ss_pred CCeEEEEcCchHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La-~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..+|+|+|+|+.|-..+..+. ..|+.+|.|+|.+ ..|++..++.+++.. .+++..+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~~-- 184 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVVN-- 184 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEeC--
Confidence 578999999999998888875 5689999998754 347777777776543 23333321
Q ss_pred CccchhhccCCceEEEcccCCH
Q 013224 119 IEDKDISFYNDFNIIVLGLDSI 140 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~ 140 (447)
...+.++++|+|+.|+-+.
T Consensus 185 ---~~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 185 ---SADEAIEEADIIVTVTNAK 203 (325)
T ss_pred ---CHHHHHhcCCEEEEccCCC
Confidence 1245668899999998764
No 128
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.98 E-value=0.19 Score=50.16 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=50.4
Q ss_pred EEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCc---eEEEEEecc
Q 013224 43 ILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG---VNIVPHFCR 118 (447)
Q Consensus 43 VlvvG~GglG~eiak~La~~Gv-g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~---v~i~~~~~~ 118 (447)
|.|||+|.+|+.++-.|+..|+ .+|.++|.+ +.|++..+.-|....+. +++..-
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~--- 58 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG--- 58 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC---
Confidence 5799999999999999999997 579999843 23556666666665443 222211
Q ss_pred CccchhhccCCceEEEcccCC
Q 013224 119 IEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn 139 (447)
.+.+-++++|+||.+...
T Consensus 59 ---~~~~~l~~aDiVIitag~ 76 (300)
T cd00300 59 ---GDYADAADADIVVITAGA 76 (300)
T ss_pred ---CCHHHhCCCCEEEEcCCC
Confidence 113467899999988653
No 129
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.93 E-value=0.26 Score=49.49 Aligned_cols=82 Identities=16% Similarity=0.331 Sum_probs=50.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEec---
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC--- 117 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~--- 117 (447)
.||+|+|+|++||.++-.|+++| ..++++-.+ +- .+++++- +..++....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~---------------------~~---~~~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRS---------------------RR---LEALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecH---------------------HH---HHHHHhC--CeEEecCCCccc
Confidence 38999999999999999999999 777775322 11 2333332 344443333
Q ss_pred --cCccchhhccCCceEEEcccCCHHHHHHHHHH
Q 013224 118 --RIEDKDISFYNDFNIIVLGLDSIEARSYINAV 149 (447)
Q Consensus 118 --~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~ 149 (447)
.......+....+|+||.++=+..+...+..+
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l 87 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSL 87 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHh
Confidence 11122345556889998887665544444443
No 130
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.92 E-value=0.18 Score=50.44 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|.|+|+|.+|+.++++|+..|. ++++.|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4689999999999999999999996 78999876
No 131
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.89 E-value=0.46 Score=50.40 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=60.6
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
|+ +.+|+|||.|.++..=++.|..+|. +|++|-++. . +.++++...-+|+.+.
T Consensus 10 l~-~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 10 LR-DRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred cC-CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEe
Confidence 67 8999999999999999999999995 899985431 1 0111111112344444
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
.. +..+.++++++||.|+|+.+.-..|-+.|.
T Consensus 63 ~~---~~~~dl~~~~lv~~at~d~~~n~~i~~~a~ 94 (457)
T PRK10637 63 GP---FDESLLDTCWLAIAATDDDAVNQRVSEAAE 94 (457)
T ss_pred CC---CChHHhCCCEEEEECCCCHHHhHHHHHHHH
Confidence 33 344567899999999999888888887874
No 132
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.85 E-value=0.089 Score=55.94 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=68.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCCh--HHHHHHHHHHhh-CCceEEEEEec
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKP--KAEVAAKRVMER-VSGVNIVPHFC 117 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~--Ka~~a~~~l~~~-np~v~i~~~~~ 117 (447)
++|.|||+|..|..+|.||+..|+ ++++.|.+.=....+...-. .-|.. -+...++.++.+ .|.+-+.....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAK----EGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhh----hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 589999999999999999999998 79999865433222211000 00100 122233444433 34433333221
Q ss_pred -c-Ccc---chhhccCCceEEEcccCC--HHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccc
Q 013224 118 -R-IED---KDISFYNDFNIIVLGLDS--IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (447)
Q Consensus 118 -~-i~~---~~~~~~~~~DvVi~~~Dn--~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~ 178 (447)
. +.+ .....++.-|+||++.-. ..+++... .+ ...++.++++++.|.
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~-~l-------------~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIK-RC-------------EEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH-HH-------------HHcCCeEEcCCCCCC
Confidence 1 111 112345666899998554 33444443 33 267999999999875
No 133
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.82 E-value=0.13 Score=51.00 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=31.2
Q ss_pred HhcCCeEEEEcCch-HHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~Gg-lG~eiak~La~~Gvg~i~lvD~ 72 (447)
+. ..+|+|+|.|+ +|..++..|...|. .+++++.
T Consensus 157 l~-Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 157 LA-GKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CC-CCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 56 88999999999 99999999999998 9999873
No 134
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.37 Score=46.27 Aligned_cols=64 Identities=28% Similarity=0.422 Sum_probs=44.5
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
|. +.+|+|.| .||+|.++++.|+..|. ++.++|.+ ..+.+.+++.+.+.++..++..+
T Consensus 5 l~-~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 5 LA-GKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred cC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 56 78999999 57999999999999997 67777632 22445555556554445556666
Q ss_pred eccCcc
Q 013224 116 FCRIED 121 (447)
Q Consensus 116 ~~~i~~ 121 (447)
..++.+
T Consensus 64 ~~Dl~~ 69 (260)
T PRK07063 64 PADVTD 69 (260)
T ss_pred EccCCC
Confidence 655543
No 135
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.44 Score=45.22 Aligned_cols=62 Identities=21% Similarity=0.432 Sum_probs=44.5
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
+.+|+|.| .||+|.++++.|+..|. ++.+++.+. .+.+.+.+.+.+.+|..++..+..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46789998 89999999999999995 788877532 2334445555566677777766666
Q ss_pred Ccc
Q 013224 119 IED 121 (447)
Q Consensus 119 i~~ 121 (447)
+.+
T Consensus 62 ~~~ 64 (248)
T PRK08251 62 VND 64 (248)
T ss_pred CCC
Confidence 654
No 136
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.62 E-value=0.14 Score=55.42 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.9
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
++ +.+|+|+|+||+|..+++.|+..|+ +|.+++.
T Consensus 377 ~~-~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LA-GKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CC-CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 55 6799999999999999999999999 8999864
No 137
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.52 E-value=0.53 Score=50.37 Aligned_cols=121 Identities=17% Similarity=0.115 Sum_probs=71.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCCh---HHHHHHHHHHhh-CCceEEEEE
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKP---KAEVAAKRVMER-VSGVNIVPH 115 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~---Ka~~a~~~l~~~-np~v~i~~~ 115 (447)
-.+|.+||+|-.|..+|+||+..|+ ++++.|.+.=....+... ....|-. -+...++.++.+ .|++-+...
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 4589999999999999999999998 789988653221111110 0000211 122333444332 255555444
Q ss_pred eccC--cc---chhhccCCceEEEcccCC-HHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccc
Q 013224 116 FCRI--ED---KDISFYNDFNIIVLGLDS-IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (447)
Q Consensus 116 ~~~i--~~---~~~~~~~~~DvVi~~~Dn-~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~ 178 (447)
...- .+ .-...++.=|+|||+.-. ++.-+.+.+.+ ...++.++++++.|.
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l-------------~~~Gi~fldapVSGG 136 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEA-------------AEKGLLYLGMGVSGG 136 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH-------------HHcCCeEEeCCCcCC
Confidence 3221 11 112345566899998544 55444555555 367999999999876
No 138
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.35 E-value=0.24 Score=50.53 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=57.5
Q ss_pred eEEEEcC-chHHHHHHHHHHHhCCCeEE-EEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 42 RILVVGA-GGLGCELLKDLALSGFKNLE-VIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 42 ~VlvvG~-GglG~eiak~La~~Gvg~i~-lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
||+|+|+ |.+|.++++.|...-.-++. +++.+. ..|+. +.+.+|.+.... ...+
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~~ 57 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLNL 57 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Ccee
Confidence 7999999 99999999999865333444 445331 12321 111223221100 0111
Q ss_pred ccc-hhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 120 EDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 120 ~~~-~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
.+. ..++.+++|+|+.|+.+-.++.++..+. ..++.+||.+
T Consensus 58 ~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~~--------------~~G~~VIDlS 99 (346)
T TIGR01850 58 EPIDEEEIAEDADVVFLALPHGVSAELAPELL--------------AAGVKVIDLS 99 (346)
T ss_pred ecCCHHHhhcCCCEEEECCCchHHHHHHHHHH--------------hCCCEEEeCC
Confidence 111 1344468999999999988888887765 4578888775
No 139
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.29 E-value=0.25 Score=46.74 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=30.8
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
++ +.+|+|.| .|++|..+++.|+..|. ++.+++.+.
T Consensus 4 ~~-~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~ 40 (251)
T PRK12826 4 LE-GRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICG 40 (251)
T ss_pred CC-CCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 45 77899999 69999999999999997 788887653
No 140
>PRK08291 ectoine utilization protein EutC; Validated
Probab=93.19 E-value=0.41 Score=48.47 Aligned_cols=75 Identities=25% Similarity=0.252 Sum_probs=53.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~-~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..+++|+|+|+.|...+..|.. .|+.+++|++.+ ..|++..++.+++.. .+++....
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-- 189 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-- 189 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC--
Confidence 4689999999999999999985 578999998632 237777777776533 23333321
Q ss_pred CccchhhccCCceEEEcccCC
Q 013224 119 IEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn 139 (447)
...+.++++|+|+.|+-+
T Consensus 190 ---d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 190 ---DVHEAVAGADIIVTTTPS 207 (330)
T ss_pred ---CHHHHHccCCEEEEeeCC
Confidence 124556789999999865
No 141
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.19 E-value=0.25 Score=49.31 Aligned_cols=32 Identities=34% Similarity=0.493 Sum_probs=28.9
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 79999999999999999999997 689988654
No 142
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.14 E-value=0.5 Score=45.44 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=28.6
Q ss_pred HhcCCeEEEEcC-c-hHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGA-G-GLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~-G-glG~eiak~La~~Gvg~i~lvD~ 72 (447)
+. +.+++|.|+ | |||..+++.|+..|. ++.++|.
T Consensus 15 ~~-~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~ 50 (262)
T PRK07831 15 LA-GKVVLVTAAAGTGIGSATARRALEEGA-RVVISDI 50 (262)
T ss_pred cC-CCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeC
Confidence 45 789999997 5 799999999999997 5777664
No 143
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.14 E-value=0.42 Score=46.86 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=25.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHhC--CCeEEEEeCC
Q 013224 41 ARILVVGAGGLGCELLKDLALSG--FKNLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~G--vg~i~lvD~D 73 (447)
.||.|||+|.+|..+++.|...+ +.-+.++|.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 37999999999999999998764 3334455543
No 144
>PRK07680 late competence protein ComER; Validated
Probab=93.01 E-value=0.66 Score=45.49 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=50.8
Q ss_pred eEEEEcCchHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 42 RILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gv---g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
+|.|||+|.+|..++..|...|+ ..+.++|.+. .+++ .+.+..+.+.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~----~~~~~~~g~~~~----- 53 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAY----HIKERYPGIHVA----- 53 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHH----HHHHHcCCeEEE-----
Confidence 69999999999999999999985 4577765432 1222 222222333321
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
....+...++|+||.|+-....+..+..+.
T Consensus 54 --~~~~~~~~~aDiVilav~p~~~~~vl~~l~ 83 (273)
T PRK07680 54 --KTIEEVISQSDLIFICVKPLDIYPLLQKLA 83 (273)
T ss_pred --CCHHHHHHhCCEEEEecCHHHHHHHHHHHH
Confidence 123345678999999986655666665543
No 145
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.00 E-value=0.16 Score=51.36 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=31.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.||.|||+|.+|..++..|+..|+..|.|+|-+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 7899999999999999999999998889999954
No 146
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=92.93 E-value=0.25 Score=52.49 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=68.9
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCC--hHHHHHHHHHHhh-CCceEEEEEecc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGK--PKAEVAAKRVMER-VSGVNIVPHFCR 118 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~--~Ka~~a~~~l~~~-np~v~i~~~~~~ 118 (447)
.|.+||+|..|..+|.+|+..|+ ++++.|.+.-....+..+. ..|+ .-+...++.++.+ .|++-+...+..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~ 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence 47899999999999999999998 7999987654333332210 0010 0112233444333 355444443331
Q ss_pred --Ccc---chhhccCCceEEEcccC-C-HHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccc
Q 013224 119 --IED---KDISFYNDFNIIVLGLD-S-IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (447)
Q Consensus 119 --i~~---~~~~~~~~~DvVi~~~D-n-~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~ 178 (447)
+.+ .-...++.=|+|||+.- + ..+++... .+ ...++.++++++.|.
T Consensus 75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~-~l-------------~~~gi~fvdapVsGG 127 (467)
T TIGR00873 75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK-EL-------------KAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH-HH-------------HhcCCEEEcCCCCCC
Confidence 111 11234556689999864 3 33444443 34 267899999999875
No 147
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.91 E-value=0.33 Score=46.06 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.5
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
++ +.+|+|+|+ |++|.++++.|+..|. ++.+++.+.
T Consensus 3 ~~-~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~ 39 (251)
T PRK07231 3 LE-GKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNE 39 (251)
T ss_pred cC-CcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 45 789999995 8999999999999997 488887654
No 148
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.87 E-value=1.1 Score=48.81 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=50.5
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhh-------CCceE
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-------VSGVN 111 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~-------np~v~ 111 (447)
...|+|.|+ |++|..+++.|+..|. ++.+++.+. .|++.+.+.+.++ .+..+
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~~~ 139 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPVEK 139 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhccccccccccCc
Confidence 667999995 9999999999999996 677665432 1333333333221 11123
Q ss_pred EEEEeccCccch--hhccCCceEEEcccC
Q 013224 112 IVPHFCRIEDKD--ISFYNDFNIIVLGLD 138 (447)
Q Consensus 112 i~~~~~~i~~~~--~~~~~~~DvVi~~~D 138 (447)
++.+..++.+.. ...+.+.|+||++..
T Consensus 140 v~iV~gDLtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 140 LEIVECDLEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred eEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence 556666666432 346788999988753
No 149
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=92.87 E-value=0.67 Score=45.22 Aligned_cols=92 Identities=24% Similarity=0.297 Sum_probs=55.0
Q ss_pred CeEEEEcC-chHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 41 ARILVVGA-GGLGCELLKDLALS-GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 41 ~~VlvvG~-GglG~eiak~La~~-Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
.||.|+|+ |.+|..+++.+... ++.-..++|.+.- ...+ + ....+..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~---~---------------------~~~~i~~---- 50 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG---Q---------------------GALGVAI---- 50 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc---c---------------------CCCCccc----
Confidence 48999999 99999999988764 5555556665431 1110 0 0011111
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeecccc
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFK 179 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~ 179 (447)
.+.-.++++.+|+||+++-. ..-..+-..|. ++++|++.+ +.|+.
T Consensus 51 -~~dl~~ll~~~DvVid~t~p-~~~~~~~~~al-------------~~G~~vvig-ttG~s 95 (257)
T PRK00048 51 -TDDLEAVLADADVLIDFTTP-EATLENLEFAL-------------EHGKPLVIG-TTGFT 95 (257)
T ss_pred -cCCHHHhccCCCEEEECCCH-HHHHHHHHHHH-------------HcCCCEEEE-CCCCC
Confidence 11123345578999999843 44344555553 789999955 55554
No 150
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.79 E-value=0.17 Score=46.70 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=52.4
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCcccc---CCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQF---LFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~Rqf---Lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
+|.|||+|.+|..+|..++++|. +++++|.+.-......+.. |=...+-|+...+.+...+.++ .. ..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i------~~-~~d 72 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARI------SF-TTD 72 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTE------EE-ESS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhc------cc-ccC
Confidence 69999999999999999999997 8999997654332221110 0000111222222233333322 11 111
Q ss_pred CccchhhccCCceEEEcc-cCCHHHHHHHHHHH
Q 013224 119 IEDKDISFYNDFNIIVLG-LDSIEARSYINAVA 150 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~-~Dn~~~r~~in~~~ 150 (447)
-.+.. ++|+||.| ..+.+.++.+-...
T Consensus 73 ----l~~~~-~adlViEai~E~l~~K~~~~~~l 100 (180)
T PF02737_consen 73 ----LEEAV-DADLVIEAIPEDLELKQELFAEL 100 (180)
T ss_dssp ----GGGGC-TESEEEE-S-SSHHHHHHHHHHH
T ss_pred ----HHHHh-hhheehhhccccHHHHHHHHHHH
Confidence 12333 89999999 45677776665444
No 151
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.79 E-value=1.1 Score=44.91 Aligned_cols=33 Identities=27% Similarity=0.597 Sum_probs=30.4
Q ss_pred eEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCc
Q 013224 42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gv-g~i~lvD~D~ 74 (447)
||.|||+|.+|+.+|..|+..|+ .++.++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 79999999999999999999996 7899999764
No 152
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.59 E-value=0.17 Score=53.06 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=33.0
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|+|+|.+|..+++.|...|+.+++++|.+
T Consensus 178 l~-~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 178 LK-GKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred cc-CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 56 7899999999999999999999999999998753
No 153
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.57 E-value=0.21 Score=45.93 Aligned_cols=95 Identities=20% Similarity=0.185 Sum_probs=59.4
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
..|. +++|.|+|+|.+|.++|+.|...|. ++..+|...-. .. ..... . +..
T Consensus 32 ~~l~-g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~--------------------~~---~~~~~--~--~~~ 82 (178)
T PF02826_consen 32 RELR-GKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKP--------------------EE---GADEF--G--VEY 82 (178)
T ss_dssp S-ST-TSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHH--------------------HH---HHHHT--T--EEE
T ss_pred cccC-CCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCCh--------------------hh---hcccc--c--cee
Confidence 3578 9999999999999999999999998 88888854321 11 01111 1 111
Q ss_pred EeccCccchhhccCCceEEEcccC-CHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 115 ~~~~i~~~~~~~~~~~DvVi~~~D-n~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
..-+++++++|+|+.++- +.+++..+|+...... +.+.-+|+.+
T Consensus 83 ------~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~m----------k~ga~lvN~a 127 (178)
T PF02826_consen 83 ------VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKM----------KPGAVLVNVA 127 (178)
T ss_dssp ------SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTS----------TTTEEEEESS
T ss_pred ------eehhhhcchhhhhhhhhccccccceeeeeeeeecc----------ccceEEEecc
Confidence 112457778888877754 5567777777765432 3455667665
No 154
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.57 E-value=0.57 Score=47.11 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=44.1
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
+..++|.|+ ||+|.++++.|+..|. ++.+++.+. .|.+.+++.+++.++..++..+..+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~D 112 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVVD 112 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 678999995 8999999999999997 688887432 2555666677766666666555544
Q ss_pred C
Q 013224 119 I 119 (447)
Q Consensus 119 i 119 (447)
+
T Consensus 113 l 113 (320)
T PLN02780 113 F 113 (320)
T ss_pred C
Confidence 4
No 155
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.50 E-value=0.2 Score=49.42 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=31.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+|+|+|+||.+..++..|+..|+.+|+|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3589999999999999999999999999999854
No 156
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.50 E-value=0.5 Score=49.14 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=60.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCC-----------CCCC-----------hHHH
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRME-----------DVGK-----------PKAE 97 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~-----------diG~-----------~Ka~ 97 (447)
+.+|+|+|.|.+|.++++.|...|. .+.++|.|.++.. ..+...+-.. .+.+ ....
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~-~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHR-LPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhh-ccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 5789999999999999999998886 7889998855322 2122111111 1222 1223
Q ss_pred HHHHHHHhhCCceEEEEEeccCccchhhcc--CCceEEEccc
Q 013224 98 VAAKRVMERVSGVNIVPHFCRIEDKDISFY--NDFNIIVLGL 137 (447)
Q Consensus 98 ~a~~~l~~~np~v~i~~~~~~i~~~~~~~~--~~~DvVi~~~ 137 (447)
.++..++++||++++.+...+-. +.+.+ .+.|.||+-.
T Consensus 318 ~ivL~ar~l~p~~kIIa~v~~~~--~~~~L~~~GaD~VIsp~ 357 (393)
T PRK10537 318 FVVLAAKEMSSDVKTVAAVNDSK--NLEKIKRVHPDMIFSPQ 357 (393)
T ss_pred HHHHHHHHhCCCCcEEEEECCHH--HHHHHHhcCCCEEECHH
Confidence 35556888999988887765432 22222 3678888763
No 157
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=92.50 E-value=0.53 Score=41.68 Aligned_cols=76 Identities=18% Similarity=0.325 Sum_probs=50.2
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCc
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 120 (447)
.|+|.| .||||-++++.|+..|-.++.+++.+ .-..+.+...+.+...+ .++.....++.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~~ 62 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDLS 62 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESETT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--ccccccccccc
Confidence 688998 89999999999999998888888755 11224445555555444 66666666654
Q ss_pred cch---------hhccCCceEEEcc
Q 013224 121 DKD---------ISFYNDFNIIVLG 136 (447)
Q Consensus 121 ~~~---------~~~~~~~DvVi~~ 136 (447)
+.. .+.+...|++|.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~ld~li~~ 87 (167)
T PF00106_consen 63 DPESIRALIEEVIKRFGPLDILINN 87 (167)
T ss_dssp SHHHHHHHHHHHHHHHSSESEEEEE
T ss_pred ccccccccccccccccccccccccc
Confidence 311 1223456666655
No 158
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.49 E-value=0.79 Score=43.88 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=49.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gv---g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
..||.|||+|.+|..+++.|+..|. ..+.+++.. ...|++.++ +.. .+.+ .
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~----~~~-~~~~--~- 57 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQ----ARY-NVST--T- 57 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHH----HHc-CcEE--e-
Confidence 6789999999999999999998873 223333321 012322222 222 1221 1
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
....+.++++|+|+.|+-+...+..+..+.
T Consensus 58 ----~~~~~~~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 58 ----TDWKQHVTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred ----CChHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence 122345678999999988776666665543
No 159
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=92.45 E-value=0.57 Score=47.06 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=28.7
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhC-CCeEEEEeCC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSG-FKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~G-vg~i~lvD~D 73 (447)
..+|+|.|+ |++|..+++.|+..| ..+++++|.+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 678999995 899999999999987 4578888754
No 160
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.41 E-value=0.3 Score=49.39 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=29.5
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGF-KNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gv-g~i~lvD~ 72 (447)
-.||+|+|+ |.+|+.++..|+..|. .+|.|+|-
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 569999998 9999999999998787 47999996
No 161
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.27 E-value=0.99 Score=46.07 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=31.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|+|+|.+|.-.+..+.+.|..+|.++|.+.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 33899999999999999999999999999998543
No 162
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.24 E-value=0.73 Score=52.94 Aligned_cols=40 Identities=35% Similarity=0.366 Sum_probs=35.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNL 80 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL 80 (447)
..||+|||+|.-|-+.|..|++.|. +++++|...++.-|.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~~ 422 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLPF 422 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCC-eEEEEcccccccccc
Confidence 7899999999999999999999996 799999876654443
No 163
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.21 E-value=0.68 Score=45.81 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=27.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.+|.|||+|.+|..++++|+..|+ ++.+.|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 67777754
No 164
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.13 E-value=0.42 Score=46.29 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=31.0
Q ss_pred HHhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 36 DLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 36 ~L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++. +.+++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 6 ~~~-~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 6 DFA-GKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred cCC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 466 789999996 8999999999999996 58888764
No 165
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.13 E-value=0.87 Score=43.50 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=30.1
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 8 ~~-~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~ 43 (255)
T PRK07523 8 LT-GRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD 43 (255)
T ss_pred CC-CCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 55 789999995 9999999999999997 68887754
No 166
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.11 E-value=0.32 Score=49.25 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=48.6
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhC-CceE
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGF-K-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVN 111 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gv-g-----~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~n-p~v~ 111 (447)
-.||.|||+ |.+|+.++..|+..|+ + +|.|+|-.. .+.|++.-+.-+.... |...
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~ 65 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLA 65 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccC
Confidence 468999998 9999999999999987 5 688887321 1123333343444333 3221
Q ss_pred -EEEEeccCccchhhccCCceEEEcccC
Q 013224 112 -IVPHFCRIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 112 -i~~~~~~i~~~~~~~~~~~DvVi~~~D 138 (447)
++ +...+.+-++++|+||.+-.
T Consensus 66 ~~~-----i~~~~~~~~~daDvVVitAG 88 (323)
T TIGR01759 66 GVV-----ATTDPEEAFKDVDAALLVGA 88 (323)
T ss_pred CcE-----EecChHHHhCCCCEEEEeCC
Confidence 11 12234466889999987644
No 167
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.04 E-value=0.19 Score=49.81 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=27.3
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
||+|+|+|++|+.++..|+.+|. ++++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 79999999999999999999995 6888875
No 168
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.01 E-value=0.51 Score=48.74 Aligned_cols=33 Identities=33% Similarity=0.667 Sum_probs=29.5
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|.||| +|.+|..+++.|...|. .++++|.+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 36899999 99999999999999995 69999864
No 169
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.96 E-value=0.53 Score=46.91 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=28.3
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 43 VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|.|||+|.+|+.++..|+..|..++.++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999886699999976
No 170
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.90 E-value=0.51 Score=44.66 Aligned_cols=35 Identities=34% Similarity=0.570 Sum_probs=30.1
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|+ +.+++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 3 ~~-~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~ 38 (253)
T PRK08217 3 LK-DKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN 38 (253)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45 789999997 9999999999999997 68888743
No 171
>PRK09186 flagellin modification protein A; Provisional
Probab=91.89 E-value=0.63 Score=44.33 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=26.9
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEe
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVID 71 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD 71 (447)
+.+|+|.|+ ||+|.++++.|+..|. ++.+++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 688999995 8999999999999997 566665
No 172
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.85 E-value=0.26 Score=46.30 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=31.4
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|+ .++|+|+|+|.+|..+++.|...|. ++.++|.+
T Consensus 26 l~-gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 26 LE-GKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CC-CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 66 8899999999999999999999997 77788755
No 173
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.83 E-value=2.2 Score=35.61 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=53.0
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCccc
Q 013224 43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK 122 (447)
Q Consensus 43 VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~ 122 (447)
|+|+|+|.+|-++++.|...| -.+.++|.|.- + .+.+++.. +..+.++..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 689999999999999999955 58999997652 1 22333322 23444544432
Q ss_pred ---hhhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 123 ---DISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 123 ---~~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
...-+++++.|+.++++.+.-..+-..+.
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r 84 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLAR 84 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHH
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHH
Confidence 23346789999999988766666555554
No 174
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.78 E-value=0.43 Score=48.32 Aligned_cols=93 Identities=24% Similarity=0.233 Sum_probs=60.2
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEE
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV 113 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg-~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~ 113 (447)
..+. .+++.|+|+|.||..+|+.+. ||| +|...|.... ++.+. +.+ ..
T Consensus 142 ~~l~-gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~------------------~~~~~------~~~----~~ 190 (324)
T COG1052 142 FDLR-GKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN------------------PEAEK------ELG----AR 190 (324)
T ss_pred cCCC-CCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC------------------hHHHh------hcC----ce
Confidence 3477 999999999999999999998 664 4555443221 01000 000 11
Q ss_pred EEeccCccchhhccCCceEEE-cccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 114 PHFCRIEDKDISFYNDFNIIV-LGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 114 ~~~~~i~~~~~~~~~~~DvVi-~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
.+ + .+++++++|+|+ .|=.+.+++..||+...... +.+.-+|+.+
T Consensus 191 ----y~-~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~m----------k~ga~lVNta 236 (324)
T COG1052 191 ----YV-D-LDELLAESDIISLHCPLTPETRHLINAEELAKM----------KPGAILVNTA 236 (324)
T ss_pred ----ec-c-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhC----------CCCeEEEECC
Confidence 11 1 456788899884 45668899999998876432 4566677765
No 175
>PRK14982 acyl-ACP reductase; Provisional
Probab=91.73 E-value=0.24 Score=50.43 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=32.1
Q ss_pred HHhcCCeEEEEcC-chHHHHHHHHHHH-hCCCeEEEEeCC
Q 013224 36 DLQEYARILVVGA-GGLGCELLKDLAL-SGFKNLEVIDMD 73 (447)
Q Consensus 36 ~L~~~~~VlvvG~-GglG~eiak~La~-~Gvg~i~lvD~D 73 (447)
.|+ +++|+|+|+ |.+|+++++.|+. .|+.++++++.+
T Consensus 152 ~l~-~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DLS-KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred CcC-CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 366 799999999 8999999999985 589999998754
No 176
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.67 E-value=0.24 Score=49.65 Aligned_cols=92 Identities=20% Similarity=0.370 Sum_probs=56.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC--------cccCccccCCCCCCCCChHHHHHHHHHHhhCCceEE
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE--------VSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI 112 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve--------~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i 112 (447)
.+|.|||+|-.|+-+|..++.+|+ .+++.|...=. ..+|.|+. .-|+.+.+.+...+.++.|....
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~~ 77 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTDL 77 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCch
Confidence 589999999999999999999776 78998866111 11122221 11333333333334333332221
Q ss_pred EEEeccCccchhhccCCceEEEcc-cCCHHHHHHHHHHH
Q 013224 113 VPHFCRIEDKDISFYNDFNIIVLG-LDSIEARSYINAVA 150 (447)
Q Consensus 113 ~~~~~~i~~~~~~~~~~~DvVi~~-~Dn~~~r~~in~~~ 150 (447)
.-++++|+||.+ ..+.+.++.+=+..
T Consensus 78 ------------~~l~~~DlVIEAv~E~levK~~vf~~l 104 (307)
T COG1250 78 ------------AALKDADLVIEAVVEDLELKKQVFAEL 104 (307)
T ss_pred ------------hHhccCCEEEEeccccHHHHHHHHHHH
Confidence 146789999998 56777766554443
No 177
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.67 E-value=1.3 Score=42.34 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=27.8
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 457999995 7999999999999996 78888754
No 178
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=91.66 E-value=0.54 Score=47.87 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=57.3
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCc
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 120 (447)
||+||| .|.+|.++++.|...|...+.++= +.+..+.|+.=. . .+..+.. .++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~~~--~~~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKELEV--NEAK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeEEE--EeCC
Confidence 689999 788999999999987765444321 223334443211 0 1122222 1221
Q ss_pred cchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 121 DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 121 ~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
.+-++++|+||.|+.+..++.+...+. +.+..+||.+
T Consensus 56 ---~~~~~~~D~v~~a~g~~~s~~~a~~~~--------------~~G~~VID~s 92 (339)
T TIGR01296 56 ---IESFEGIDIALFSAGGSVSKEFAPKAA--------------KCGAIVIDNT 92 (339)
T ss_pred ---hHHhcCCCEEEECCCHHHHHHHHHHHH--------------HCCCEEEECC
Confidence 223478999999999998888877665 4566777765
No 179
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.57 E-value=0.25 Score=49.50 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..||+|+|+|++|+.++-.|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 4689999999999999999999995 79999875
No 180
>PRK07478 short chain dehydrogenase; Provisional
Probab=91.55 E-value=0.71 Score=44.09 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=29.1
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++ +.+++|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 4 ~~-~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~ 39 (254)
T PRK07478 4 LN-GKVAIITGASSGIGRAAAKLFAREGA-KVVVGARR 39 (254)
T ss_pred CC-CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45 678999995 7999999999999997 67777653
No 181
>PRK08339 short chain dehydrogenase; Provisional
Probab=91.44 E-value=1.1 Score=43.40 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=29.7
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|+ +..++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 6 l~-~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LS-GKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CC-CCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 55 678999996 7999999999999997 68887754
No 182
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.41 E-value=1.6 Score=43.88 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=30.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|.|+|++|...+..+..+|..++.++|..
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~ 203 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS 203 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 6799999999999999999999999888888743
No 183
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.41 E-value=0.86 Score=44.10 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=30.3
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 5 ~~-~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~ 40 (276)
T PRK05875 5 FQ-DRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN 40 (276)
T ss_pred CC-CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 56 789999996 8999999999999998 68887754
No 184
>PRK08374 homoserine dehydrogenase; Provisional
Probab=91.37 E-value=1.4 Score=44.74 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=52.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHH--------hCC--CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCc
Q 013224 40 YARILVVGAGGLGCELLKDLAL--------SGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG 109 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~--------~Gv--g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~ 109 (447)
..+|.|+|+|.+|..+++.|.. .|+ .-+.+.|.+. .+|.+..+.-.++ .+..++..+-
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gid~~~l---~~~~~~~~~~ 69 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDIDLREA---KEVKENFGKL 69 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCCChHHH---HHhhhccCch
Confidence 3589999999999999999876 674 2344445331 2344443333232 2222221111
Q ss_pred eEEEEEeccCccchhhcc--CCceEEEcccCCHHHHHHHHHHH
Q 013224 110 VNIVPHFCRIEDKDISFY--NDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 110 v~i~~~~~~i~~~~~~~~--~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
..+...........++++ ..+|+||+++....++.++-++.
T Consensus 70 ~~~~~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al 112 (336)
T PRK08374 70 SNWGNDYEVYNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEAL 112 (336)
T ss_pred hhccccccccCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHH
Confidence 111100000000223444 36899999997766766665554
No 185
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.31 E-value=0.3 Score=48.61 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=31.6
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
.|. .++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~-gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIH-GSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCC-CCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 366 7899999999999999999999997 8999875
No 186
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.29 E-value=1.2 Score=43.92 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gv---g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
..+|.+||+|.+|..+++.|...|+ .+|++.|. .. ..|++.++ +.. ++++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r----------~~--------~~~~~~l~----~~~-g~~~~--- 56 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR----------SN--------ETRLQELH----QKY-GVKGT--- 56 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC----------CC--------HHHHHHHH----Hhc-CceEe---
Confidence 5689999999999999999999983 23444331 10 01222222 211 23222
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
..+.+..+++|+||.|+-+......+..+.
T Consensus 57 ----~~~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 ----HNKKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred ----CCHHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 123345678999999999888887776664
No 187
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.23 E-value=1.6 Score=41.33 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=50.6
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCC--ceEEEEEecc
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS--GVNIVPHFCR 118 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np--~v~i~~~~~~ 118 (447)
||.||| +|.+|+.+++.|+..| .+++++|.+. .|++..++....... .+.+....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~-- 59 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTG-- 59 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEE--
Confidence 799997 8999999999999999 5777776431 233333322211111 11111110
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHH
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAV 149 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~ 149 (447)
....+..+++|+||.|+-....+..+..+
T Consensus 60 --~~~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 60 --ADNAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred --eChHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 01234567899999998876666655544
No 188
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.21 E-value=0.95 Score=43.42 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=27.5
Q ss_pred CeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 41 ARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.+|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~ 34 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARN 34 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 47999997 9999999999999996 78887753
No 189
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.20 E-value=1.6 Score=42.92 Aligned_cols=80 Identities=9% Similarity=0.229 Sum_probs=51.5
Q ss_pred eEEEEcCchHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 42 RILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gv---g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
+|.|||+|.+|..+++.|...|. .++.+++.+.- .|. +.+....+.+.+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~------ 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVEL------ 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEE------
Confidence 79999999999999999999983 46777765320 111 112222232222
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
.....+..+++|+||.|+-....+..+.++.
T Consensus 55 -~~~~~e~~~~aDvVilavpp~~~~~vl~~l~ 85 (277)
T PRK06928 55 -ADNEAEIFTKCDHSFICVPPLAVLPLLKDCA 85 (277)
T ss_pred -eCCHHHHHhhCCEEEEecCHHHHHHHHHHHH
Confidence 1123345678999999988766776666554
No 190
>PLN02427 UDP-apiose/xylose synthase
Probab=91.16 E-value=1.1 Score=46.00 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=29.3
Q ss_pred HHhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 36 ~L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
+++ ..+|||.| .|-+|+.+++.|...|--++..+|.
T Consensus 11 ~~~-~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 11 PIK-PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred ccc-CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 456 67899999 5999999999999985336887774
No 191
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=91.14 E-value=0.27 Score=47.90 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=33.4
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHh----CC------CeEEEEeCCc
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALS----GF------KNLEVIDMDR 74 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~----Gv------g~i~lvD~D~ 74 (447)
++|. +.||+++|+|+-|.-+++.|+.+ |+ ++|.++|.+=
T Consensus 21 ~~l~-d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G 69 (255)
T PF03949_consen 21 KKLS-DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG 69 (255)
T ss_dssp S-GG-G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred CCHH-HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence 3588 99999999999999999999999 99 8999999774
No 192
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.14 E-value=0.84 Score=43.63 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=29.0
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
++ +.+++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 7 ~~-~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 7 LH-GKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 55 789999996 8999999999999997 6777654
No 193
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.12 E-value=1.1 Score=43.91 Aligned_cols=61 Identities=31% Similarity=0.485 Sum_probs=50.1
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..+++|-| .+|||-++|+.|++-|. ++.||-.+ +.|-+.+++.|+..+ .++++.++.+
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~-------------------~~kL~~la~~l~~~~-~v~v~vi~~D 64 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGY-NLILVARR-------------------EDKLEALAKELEDKT-GVEVEVIPAD 64 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-------------------HHHHHHHHHHHHHhh-CceEEEEECc
Confidence 67999999 58999999999999997 67776432 347788888998877 7888888888
Q ss_pred Ccc
Q 013224 119 IED 121 (447)
Q Consensus 119 i~~ 121 (447)
+.+
T Consensus 65 Ls~ 67 (265)
T COG0300 65 LSD 67 (265)
T ss_pred CCC
Confidence 764
No 194
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.07 E-value=0.33 Score=47.29 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=50.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCC--CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gv--g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
.+|.|||+|.+|..++..|...|. ..+.++|.+. .+++.+++ .. ++.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~----~~-g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAE----EY-GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHH----hc-CCee------
Confidence 479999999999999999999984 3566665321 12222222 11 1211
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
.....+.+.++|+||.|+-....+..+..+.
T Consensus 53 -~~~~~~~~~~advVil~v~~~~~~~v~~~l~ 83 (267)
T PRK11880 53 -ATDNQEAAQEADVVVLAVKPQVMEEVLSELK 83 (267)
T ss_pred -cCChHHHHhcCCEEEEEcCHHHHHHHHHHHH
Confidence 1223345678999999987766666666554
No 195
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.83 E-value=1 Score=43.37 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.0
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 8 ~~-~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LD-DQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CC-CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 55 789999995 5799999999999998 88888764
No 196
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.80 E-value=0.36 Score=45.98 Aligned_cols=38 Identities=39% Similarity=0.421 Sum_probs=34.5
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.|+ ..+|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus 20 ~l~-g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLE-GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcC-CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 367 89999999999999999999999998999999654
No 197
>PRK00811 spermidine synthase; Provisional
Probab=90.80 E-value=0.78 Score=45.47 Aligned_cols=34 Identities=24% Similarity=0.544 Sum_probs=24.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+||++|+|+ |.-....|...++.+|++||-|.
T Consensus 77 p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 77 PKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 56899999986 44444444445899999998665
No 198
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=90.79 E-value=0.35 Score=49.14 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=33.3
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
|. +.+|+|||+|-+|..++++|...|+.+|+++....
T Consensus 172 l~-~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 172 SK-KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred cc-CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 66 89999999999999999999999999999985443
No 199
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.79 E-value=0.74 Score=45.52 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=30.8
Q ss_pred HHHhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 35 DDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 35 ~~L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+. +.+|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 36 ~~~~-~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~ 73 (293)
T PRK05866 36 VDLT-GKRILLTGASSGIGEAAAEQFARRGA-TVVAVARR 73 (293)
T ss_pred cCCC-CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3466 789999995 9999999999999996 77787643
No 200
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.77 E-value=1.1 Score=49.84 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=30.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|||+|..|-..|..|++.|. +++|+|.+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~ 359 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGV-AVTVYDRH 359 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 6799999999999999999999997 59999864
No 201
>PRK06125 short chain dehydrogenase; Provisional
Probab=90.76 E-value=1.3 Score=42.35 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=30.5
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 5 ~~-~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LA-GKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 45 789999997 7999999999999998 88888754
No 202
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.73 E-value=0.35 Score=47.78 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=28.4
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
||+|+|+|++|+.++..|+.+|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 79999999999999999999994 79999864
No 203
>PRK06194 hypothetical protein; Provisional
Probab=90.69 E-value=0.98 Score=43.99 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=29.6
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++ ..+|||.| .||+|.++++.|+..|. ++.++|.+
T Consensus 4 ~~-~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~ 39 (287)
T PRK06194 4 FA-GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ 39 (287)
T ss_pred CC-CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 44 67899999 58999999999999997 68888754
No 204
>PRK05872 short chain dehydrogenase; Provisional
Probab=90.63 E-value=1.5 Score=43.26 Aligned_cols=35 Identities=34% Similarity=0.619 Sum_probs=30.1
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 7 l~-gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (296)
T PRK05872 7 LA-GKVVVVTGAARGIGAELARRLHARGA-KLALVDLE 42 (296)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 55 789999995 8999999999999997 78888754
No 205
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.60 E-value=1.7 Score=39.27 Aligned_cols=66 Identities=29% Similarity=0.315 Sum_probs=45.1
Q ss_pred EEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 43 ILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 43 VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
|+|+|+ |.+|..+++.|...| .+++.+= |. ..|.+. .+.+ +....++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~~~--~~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SPGV--EIIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CTTE--EEEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------cccc--ccceeeehh
Confidence 799997 999999999999999 4666642 11 113222 4444 444555554
Q ss_pred ch--hhccCCceEEEcccC
Q 013224 122 KD--ISFYNDFNIIVLGLD 138 (447)
Q Consensus 122 ~~--~~~~~~~DvVi~~~D 138 (447)
.. .+.++++|.||.+..
T Consensus 51 ~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp HHHHHHHHTTSSEEEECCH
T ss_pred hhhhhhhhhhcchhhhhhh
Confidence 32 466789999999865
No 206
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=90.59 E-value=0.45 Score=49.17 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=34.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHh-CCCeEEEEeCCccCcc
Q 013224 40 YARILVVGAGGLGCELLKDLALS-GFKNLEVIDMDRIEVS 78 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~-Gvg~i~lvD~D~Ve~s 78 (447)
...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 56899999999999999999985 8778999999876543
No 207
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.57 E-value=0.55 Score=45.84 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=27.5
Q ss_pred EEEEcC-chHHHHHHHHHHHhC--C-CeEEEEeCCc
Q 013224 43 ILVVGA-GGLGCELLKDLALSG--F-KNLEVIDMDR 74 (447)
Q Consensus 43 VlvvG~-GglG~eiak~La~~G--v-g~i~lvD~D~ 74 (447)
|.|||+ |.+|..++..|+..| . .+|.++|.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 579999 999999999999998 4 6899998543
No 208
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.56 E-value=1.4 Score=46.25 Aligned_cols=83 Identities=22% Similarity=0.274 Sum_probs=51.2
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
+|+|+|+|.+|..+++.|...|. .+.++|.+.- +++. +++ . ..+..+..+..+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~-------------------~~~~----~~~-~--~~~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE-------------------RLRR----LQD-R--LDVRTVVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH-------------------HHHH----HHh-h--cCEEEEEeCCCC
Confidence 79999999999999999999997 6788885431 2221 211 0 123333344332
Q ss_pred ch--hh-ccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 122 KD--IS-FYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 122 ~~--~~-~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
.. .+ -++++|.||.++++...-..+-..+.
T Consensus 55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r 87 (453)
T PRK09496 55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAK 87 (453)
T ss_pred HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHH
Confidence 11 12 26788999888877555444444443
No 209
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=90.55 E-value=1.1 Score=45.60 Aligned_cols=95 Identities=20% Similarity=0.183 Sum_probs=54.5
Q ss_pred CeEEEEcC-chHHHHHHHHHHHhCCCeE-EEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 41 ARILVVGA-GGLGCELLKDLALSGFKNL-EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 41 ~~VlvvG~-GglG~eiak~La~~Gvg~i-~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
.||+|+|+ |.+|.++++.|....--++ .+.|.. ..|+. +.+..|.+... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~----------------~~g~~--------l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS----------------SAGKP--------LSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc----------------ccCcc--------hHHhCcccccc-cCce
Confidence 58999998 8899999999987633344 333311 11211 11112211100 0111
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
+++.....+.+.|+|+.|+.+.....++-.+. +.++++||.+
T Consensus 58 ~~~~~~~~~~~vD~Vf~alP~~~~~~~v~~a~--------------~aG~~VID~S 99 (343)
T PRK00436 58 LEPLDPEILAGADVVFLALPHGVSMDLAPQLL--------------EAGVKVIDLS 99 (343)
T ss_pred eecCCHHHhcCCCEEEECCCcHHHHHHHHHHH--------------hCCCEEEECC
Confidence 12222224467999999999877776666554 5688888875
No 210
>PLN02688 pyrroline-5-carboxylate reductase
Probab=90.54 E-value=1 Score=43.79 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=49.1
Q ss_pred eEEEEcCchHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 42 RILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gv---g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
||.+||+|.+|..++++|...|. ..|++++ +| ...|++. +.+. ++.+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~---------~r---------~~~~~~~----~~~~--g~~~~----- 52 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTAD---------DS---------NPARRDV----FQSL--GVKTA----- 52 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEe---------CC---------CHHHHHH----HHHc--CCEEe-----
Confidence 79999999999999999999985 2455541 01 1123222 2222 23321
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
....+..+++|+||.|+.....+..+..+.
T Consensus 53 --~~~~e~~~~aDvVil~v~~~~~~~vl~~l~ 82 (266)
T PLN02688 53 --ASNTEVVKSSDVIILAVKPQVVKDVLTELR 82 (266)
T ss_pred --CChHHHHhcCCEEEEEECcHHHHHHHHHHH
Confidence 123345678999999997666666665553
No 211
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.51 E-value=1.3 Score=42.90 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=46.6
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg--~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
+|.|||+|-+|..+++.|...|.. .+.+.|.+ ..|++. +.+..+.+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~-------------------~~~~~~----l~~~~~~~~~~------ 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN-------------------AQIAAR----LAERFPKVRIA------ 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCC-------------------HHHHHH----HHHHcCCceEe------
Confidence 699999999999999999998852 22333311 123332 22222322221
Q ss_pred ccchhhccCCceEEEcccCCHHHHHHHHH
Q 013224 120 EDKDISFYNDFNIIVLGLDSIEARSYINA 148 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn~~~r~~in~ 148 (447)
..+.+..+++|+|+.|+-.......+..
T Consensus 53 -~~~~~~~~~aDvVilav~p~~~~~vl~~ 80 (258)
T PRK06476 53 -KDNQAVVDRSDVVFLAVRPQIAEEVLRA 80 (258)
T ss_pred -CCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 1234456789999999886555554543
No 212
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=90.50 E-value=0.24 Score=48.18 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=35.9
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCC----------eEEEEeCCcc
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFK----------NLEVIDMDRI 75 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg----------~i~lvD~D~V 75 (447)
++|. +.||+++|+|+-|.-+++.|..+|+. +|.++|..-+
T Consensus 21 ~~l~-d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKIS-EHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChh-hcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 4688 99999999999999999999999997 8999997653
No 213
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.45 E-value=1.1 Score=46.82 Aligned_cols=41 Identities=34% Similarity=0.489 Sum_probs=34.5
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQ 83 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~Rq 83 (447)
+|.|||+|-+|..+|.+|+..|. +++++|.+.-....|+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence 79999999999999999999997 799999876555555544
No 214
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.42 E-value=0.96 Score=46.04 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=56.2
Q ss_pred CeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 41 ARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 41 ~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
.+|+|+|+ |-+|.|+++.|...+.-...|.= +...+..|+.= . ..+...... ..
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~-------------v~s~~~aG~~l--------~--~~~~~l~~~--~~ 59 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHL-------------LASSESAGHSV--------P--FAGKNLRVR--EV 59 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEE-------------EECcccCCCee--------c--cCCcceEEe--eC
Confidence 58999996 88999999999976654333221 11223345431 1 111111111 11
Q ss_pred ccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
.+ .+ ++++|+|+.|+.+-.++.++..+. +.++..||-+
T Consensus 60 ~~--~~-~~~vD~vFla~p~~~s~~~v~~~~--------------~~G~~VIDlS 97 (336)
T PRK05671 60 DS--FD-FSQVQLAFFAAGAAVSRSFAEKAR--------------AAGCSVIDLS 97 (336)
T ss_pred Ch--HH-hcCCCEEEEcCCHHHHHHHHHHHH--------------HCCCeEEECc
Confidence 11 22 478999999999877888777665 4577788764
No 215
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.39 E-value=0.4 Score=48.05 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=30.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|++|+.++..|+.+| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 568999999999999999999999 4888888764
No 216
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.38 E-value=0.81 Score=43.81 Aligned_cols=75 Identities=28% Similarity=0.440 Sum_probs=47.6
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChH-HHHHHHHHHhhCCceEEEE
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK-AEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~K-a~~a~~~l~~~np~v~i~~ 114 (447)
++ +.+|+|.|+ ||||.++++.|+..|. ++.+++.+.-+ ++.....+-..|+.... .+.+.+.+.+..+.+.+-.
T Consensus 7 ~~-~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 82 (260)
T PRK06523 7 LA-GKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADLTTAEGCAAVARAVLERLGGVDILV 82 (260)
T ss_pred CC-CCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 66 789999995 8999999999999997 68888876432 22223334455665543 2333444444444444443
Q ss_pred E
Q 013224 115 H 115 (447)
Q Consensus 115 ~ 115 (447)
+
T Consensus 83 ~ 83 (260)
T PRK06523 83 H 83 (260)
T ss_pred E
Confidence 3
No 217
>PLN02240 UDP-glucose 4-epimerase
Probab=90.34 E-value=2.7 Score=42.25 Aligned_cols=33 Identities=39% Similarity=0.616 Sum_probs=28.7
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEe
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVID 71 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD 71 (447)
|+ +.+|+|.|+ |.+|..+++.|+..|. +++++|
T Consensus 3 ~~-~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LM-GRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CC-CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 44 689999995 9999999999999995 788887
No 218
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.32 E-value=1.7 Score=45.47 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=52.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
..+|+|+|+|.+|..+++.|...|. .++++|.|.= +. +.+++..+++. ...++.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~~----~~~~~~~~~~~--~i~gd~ 284 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------RA----EELAEELPNTL--VLHGDG 284 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------HH----HHHHHHCCCCe--EEECCC
Confidence 5789999999999999999999887 7899985531 11 22222223333 233333
Q ss_pred ccc---hhhccCCceEEEcccCCHHHHHHH
Q 013224 120 EDK---DISFYNDFNIIVLGLDSIEARSYI 146 (447)
Q Consensus 120 ~~~---~~~~~~~~DvVi~~~Dn~~~r~~i 146 (447)
.+. ...-++++|.||.++++...-..+
T Consensus 285 ~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~ 314 (453)
T PRK09496 285 TDQELLEEEGIDEADAFIALTNDDEANILS 314 (453)
T ss_pred CCHHHHHhcCCccCCEEEECCCCcHHHHHH
Confidence 321 123467899999998875544333
No 219
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.31 E-value=2.1 Score=43.37 Aligned_cols=32 Identities=38% Similarity=0.496 Sum_probs=28.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
..+|+|+|+|++|...+..+..+|. ++.+++.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 6899999999999999999999998 6888775
No 220
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=90.28 E-value=0.78 Score=46.44 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=58.3
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La-~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
.|. .++|.|||+|.+|.++++.|. ..|. ++...|.- . +.+.. ... ++ +.
T Consensus 142 ~L~-gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~-------------~-------~~~~~----~~~--~~--~~ 191 (323)
T PRK15409 142 DVH-HKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARR-------------H-------HKEAE----ERF--NA--RY 191 (323)
T ss_pred CCC-CCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCC-------------C-------chhhH----Hhc--Cc--Ee
Confidence 588 999999999999999999986 4444 45554421 0 00000 011 11 11
Q ss_pred EeccCccchhhccCCceEEEccc-CCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 115 HFCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 115 ~~~~i~~~~~~~~~~~DvVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
. .-+++++++|+|+.++ -+.+++..+|+...... +.+--||+.+
T Consensus 192 -----~-~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~m----------k~ga~lIN~a 236 (323)
T PRK15409 192 -----C-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKM----------KSSAIFINAG 236 (323)
T ss_pred -----c-CHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcC----------CCCeEEEECC
Confidence 0 1346788999997764 47789999988765432 3455677765
No 221
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.27 E-value=1.4 Score=46.37 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=29.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+||+|||+|+.|...|+.|...|. .+++.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~ 33 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND 33 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 489999999999999999999997 788988543
No 222
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.25 E-value=1.4 Score=44.61 Aligned_cols=91 Identities=23% Similarity=0.337 Sum_probs=55.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 120 (447)
.+|.|+|+|+.|+.+|+-|+..| ..+++...|.-....++..- .-.+.-|++.+... -..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~-----------------~N~~yLp~i~lp~~-l~at 62 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETR-----------------ENPKYLPGILLPPN-LKAT 62 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcC-----------------cCccccCCccCCcc-cccc
Confidence 58999999999999999999999 56777654432211111110 00001122221110 1111
Q ss_pred cchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 121 DKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 121 ~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
..-.+.++++|+|+-++-+...|..+..+-
T Consensus 63 ~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~ 92 (329)
T COG0240 63 TDLAEALDGADIIVIAVPSQALREVLRQLK 92 (329)
T ss_pred cCHHHHHhcCCEEEEECChHHHHHHHHHHh
Confidence 223456678999999999988888777763
No 223
>PRK08655 prephenate dehydrogenase; Provisional
Probab=90.22 E-value=0.74 Score=48.58 Aligned_cols=31 Identities=35% Similarity=0.582 Sum_probs=27.4
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+|+||| +|++|..+++.|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 799997 89999999999999996 78888854
No 224
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=90.21 E-value=1.2 Score=45.34 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=59.0
Q ss_pred CCeEEEEcC-chHHHHHHHHHHH--hCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 40 YARILVVGA-GGLGCELLKDLAL--SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~--~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
..+|.|||+ |-+|.|+++.|.. .-+.+|..+-. +...|+.=. ++ .-.+.++
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS---------------~~saG~~~~------~~--~~~~~v~--- 57 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPVGELYALAS---------------EESAGETLR------FG--GKSVTVQ--- 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc---------------cCcCCceEE------EC--CcceEEE---
Confidence 679999997 8889999999998 45566666532 223343221 00 1123333
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
.++ ..-|+++|+|+.|+.+-.++.+..++. ..+.++||-+
T Consensus 58 -~~~---~~~~~~~Dvvf~a~p~~~s~~~~~~~~--------------~~g~~VIDlS 97 (336)
T PRK08040 58 -DAA---EFDWSQAQLAFFVAGREASAAYAEEAT--------------NAGCLVIDSS 97 (336)
T ss_pred -eCc---hhhccCCCEEEECCCHHHHHHHHHHHH--------------HCCCEEEECC
Confidence 121 122468999999999888888887775 4577788764
No 225
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=90.21 E-value=2.8 Score=42.21 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=26.4
Q ss_pred CeEEEEcC-chHHHHHHHHHHHh-CCCeEEEEeCC
Q 013224 41 ARILVVGA-GGLGCELLKDLALS-GFKNLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG~-GglG~eiak~La~~-Gvg~i~lvD~D 73 (447)
.+|+|.|+ |-+|+++++.|... |. +++.+|..
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~-~V~~~~r~ 35 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW-EVYGMDMQ 35 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC-eEEEEeCc
Confidence 37999997 99999999999876 44 78887743
No 226
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=90.20 E-value=0.38 Score=50.47 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=29.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|||+|-.||++|..|++.|+ +++|+|+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~r 34 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMR 34 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEcc
Confidence 4589999999999999999999997 79999953
No 227
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.17 E-value=1.4 Score=46.52 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=34.8
Q ss_pred HHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 32 ~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+..+.+. .+||+|+|.|+.|..+|+.|...|. .+++.|.+.
T Consensus 7 ~~~~~~~-~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 7 EFKKFIK-NKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred HHhhhhc-CCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 4445577 7899999999999999999999997 799988543
No 228
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.17 E-value=0.57 Score=45.22 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 31 TELRDDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 31 ~~~q~~L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+-.|.+++ ..+++|.|+ ||+|.++++.|+..|. ++.+++.+.
T Consensus 6 ~~~~~~l~-~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 6 PMAQSTWQ-GKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred hhhHHhhC-CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 45789999 899999996 7999999999999996 777777653
No 229
>PRK08589 short chain dehydrogenase; Validated
Probab=90.15 E-value=1.5 Score=42.67 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=29.0
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
+. +.+++|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 4 l~-~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r 38 (272)
T PRK08589 4 LE-NKVAVITGASTGIGQASAIALAQEGA-YVLAVDI 38 (272)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 55 778999996 8999999999999996 6777764
No 230
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.13 E-value=2.3 Score=34.98 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=52.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
+.+||-+|||. |......+.+..-.+++-||.+.- -.+.+.+++.+....-+|+.+..++
T Consensus 2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~~-------------------~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISPE-------------------MLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSHH-------------------HHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCHH-------------------HHHHHHHHHHhcCCCCCeEEEECcc
Confidence 68999999986 554444444445567999985431 3344555565555566788888888
Q ss_pred ccchhhccCCceEEEccc
Q 013224 120 EDKDISFYNDFNIIVLGL 137 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~ 137 (447)
....++..+||+|+...
T Consensus 62 -~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 -EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp -HGGTTTSSCEEEEEECS
T ss_pred -ccCcccCCCCCEEEECC
Confidence 55667778899998866
No 231
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=90.13 E-value=0.38 Score=47.51 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=35.7
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHh----CC------CeEEEEeCCcc
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALS----GF------KNLEVIDMDRI 75 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~----Gv------g~i~lvD~D~V 75 (447)
++|. +.||+++|+|+-|.-+++.|+.+ |+ ++|.++|.+=+
T Consensus 21 ~~l~-d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 21 KPLS-DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred CChh-hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 4688 89999999999999999999988 99 79999997653
No 232
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.12 E-value=1.2 Score=42.09 Aligned_cols=35 Identities=34% Similarity=0.379 Sum_probs=29.0
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|+ +.+++|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 3 ~~-~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~ 38 (252)
T PRK06138 3 LA-GRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRD 38 (252)
T ss_pred CC-CcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCC
Confidence 45 778999995 8999999999999995 67777643
No 233
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.11 E-value=1.5 Score=43.60 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
..+|+|+|+|++|...+..+...|...+.++|.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 568999999999999998888899988877764
No 234
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.06 E-value=0.37 Score=47.64 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=27.6
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+|.|||+|-+|+.++.+|+..|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999996 78888754
No 235
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.03 E-value=0.45 Score=48.02 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=55.1
Q ss_pred HHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEE
Q 013224 33 LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI 112 (447)
Q Consensus 33 ~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i 112 (447)
..+.|+ +++|.|||+|.+|..+|++|..+|+ ++.+.|.. . ++...+ ... +.++
T Consensus 10 ~~~~Lk-gKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~--~------------------~s~~~A---~~~--G~~v 62 (335)
T PRK13403 10 NVELLQ-GKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRP--G------------------KSFEVA---KAD--GFEV 62 (335)
T ss_pred ChhhhC-cCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECc--c------------------hhhHHH---HHc--CCEE
Confidence 345688 9999999999999999999999998 67676521 0 111111 111 2221
Q ss_pred EEEeccCccchhhccCCceEEEcccCCHHHHHHHHHH
Q 013224 113 VPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAV 149 (447)
Q Consensus 113 ~~~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~ 149 (447)
. ...+.++.+|+|+.++-+.+++..++.-
T Consensus 63 ~--------sl~Eaak~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 63 M--------SVSEAVRTAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred C--------CHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence 1 2356788999998887666777666643
No 236
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.02 E-value=0.45 Score=47.11 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=30.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 489999999999999999999997 799999654
No 237
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.01 E-value=0.93 Score=42.69 Aligned_cols=34 Identities=35% Similarity=0.507 Sum_probs=27.6
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEE-eC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVI-DM 72 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lv-D~ 72 (447)
|. ..+++|+|+ |++|.++++.|+..|.. +.++ +.
T Consensus 3 ~~-~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r 38 (247)
T PRK05565 3 LM-GKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDI 38 (247)
T ss_pred CC-CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCC
Confidence 45 678999995 89999999999999974 5554 53
No 238
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.99 E-value=1.1 Score=45.41 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=56.1
Q ss_pred CeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 41 ~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
.||+|+| .|.+|.++++.|...|...+.|. - +.+..+.|+.=. ++ +.++... ++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~--------~-----l~s~~~~g~~l~---------~~-g~~i~v~--d~ 56 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLR--------L-----LASARSAGKELS---------FK-GKELKVE--DL 56 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEE--------E-----EEccccCCCeee---------eC-CceeEEe--eC
Confidence 4899999 67899999999998776433222 1 112222333210 11 1222221 22
Q ss_pred ccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
.. .-+++.|+||.|+.+..++.+...+. ..+..+||.+
T Consensus 57 ~~---~~~~~vDvVf~A~g~g~s~~~~~~~~--------------~~G~~VIDlS 94 (334)
T PRK14874 57 TT---FDFSGVDIALFSAGGSVSKKYAPKAA--------------AAGAVVIDNS 94 (334)
T ss_pred CH---HHHcCCCEEEECCChHHHHHHHHHHH--------------hCCCEEEECC
Confidence 11 22468999999999999998887765 4567777754
No 239
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.99 E-value=0.46 Score=47.02 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=29.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
-.+|.|||+|.+|..++.+|+.+|. +++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 78999865
No 240
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.95 E-value=0.44 Score=47.09 Aligned_cols=33 Identities=33% Similarity=0.655 Sum_probs=29.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|-+|..+|.+|+.+|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 799998764
No 241
>PRK06940 short chain dehydrogenase; Provisional
Probab=89.94 E-value=1.2 Score=43.53 Aligned_cols=32 Identities=25% Similarity=0.570 Sum_probs=26.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+..++|.|+||||.++++.|+ .|. ++.++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCC
Confidence 467899999999999999996 784 78887754
No 242
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=89.92 E-value=1.3 Score=45.12 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=57.2
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg--~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
..||+|+| .|.+|.|+++.|...+.- ++..+. .....|+.=.. .+..+..
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~rsaGk~~~~----------~~~~~~v-- 59 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SARSAGKKVTF----------EGRDYTV-- 59 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccCCCCCeeee----------cCceeEE--
Confidence 57999999 577899999999987664 444432 22233432211 1111111
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
..+ ..+-++++|+||.|+.+-.++.+..++. ..+..+||.+
T Consensus 60 ~~~---~~~~~~~~D~vf~a~p~~~s~~~~~~~~--------------~~g~~VIDlS 100 (344)
T PLN02383 60 EEL---TEDSFDGVDIALFSAGGSISKKFGPIAV--------------DKGAVVVDNS 100 (344)
T ss_pred EeC---CHHHHcCCCEEEECCCcHHHHHHHHHHH--------------hCCCEEEECC
Confidence 111 1223478999999999988888888765 4577788764
No 243
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.86 E-value=0.85 Score=46.41 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
..||.|+|+|.+|+.++..|+..| ++.++..+.-....+++.-+ .....+.. .++.+.+.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l~~~---------~~l~~~i~~------- 67 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYLGND---------VVLSDTLRA------- 67 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccCCCC---------cccCCCeEE-------
Confidence 368999999999999999999998 45655443322222221100 01111100 001111111
Q ss_pred ccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
.....+.++++|+||.++-+...+..+.++.
T Consensus 68 t~d~~~a~~~aDlVilavps~~~~~vl~~i~ 98 (341)
T PRK12439 68 TTDFAEAANCADVVVMGVPSHGFRGVLTELA 98 (341)
T ss_pred ECCHHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1112244678999999999888887777765
No 244
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=89.74 E-value=0.43 Score=48.50 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4679999999999999999999996 7999998765
No 245
>PLN02253 xanthoxin dehydrogenase
Probab=89.73 E-value=1.3 Score=43.11 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=30.1
Q ss_pred HHhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 36 ~L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++. +.+++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 15 ~l~-~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~ 51 (280)
T PLN02253 15 RLL-GKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQ 51 (280)
T ss_pred ccC-CCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 366 78899999 58999999999999996 67787743
No 246
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.72 E-value=0.64 Score=47.85 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=55.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCC------CeEEEEeCCccCcccCccccCCCCCCC-CChHHHHHHHHHHh--hC---
Q 013224 40 YARILVVGAGGLGCELLKDLALSGF------KNLEVIDMDRIEVSNLNRQFLFRMEDV-GKPKAEVAAKRVME--RV--- 107 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gv------g~i~lvD~D~Ve~sNL~RqfLf~~~di-G~~Ka~~a~~~l~~--~n--- 107 (447)
..||.|+|+|+.|+.+|..|+..|. .++++...|.. + ++. .++.+++ .|
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~---------------~~~~~----~~~~in~~~~N~~y 71 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI---------------VEGEK----LSDIINTKHENVKY 71 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc---------------ccchH----HHHHHHhcCCCccc
Confidence 5699999999999999999999983 35666643321 1 111 1222221 12
Q ss_pred -CceEEEEEeccC--ccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 108 -SGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 108 -p~v~i~~~~~~i--~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
|++++ +..+ .....+.++++|+||.++-+...|..+..+.
T Consensus 72 lp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~ 114 (365)
T PTZ00345 72 LPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIK 114 (365)
T ss_pred CCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence 23322 1112 1222356789999999999988887776664
No 247
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.71 E-value=0.91 Score=50.08 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
+.+|+|+|+|.+|..+++.|...|+ +++++|.|.- +++. +++. + ..++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~----~~~~--g--~~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIET----LRKF--G--MKVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHH----HHhc--C--CeEEEEeC
Confidence 4699999999999999999999998 7899998762 2222 2221 2 23444554
Q ss_pred ccch---hhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 120 EDKD---ISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 120 ~~~~---~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
.+.. ..-++++|+||.++|+.+.-..+-..+.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar 486 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVK 486 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHH
Confidence 4322 2345689999999999887777766664
No 248
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=89.67 E-value=1.2 Score=44.35 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=28.3
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~ 39 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW-HVIMACRN 39 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 67899999 58999999999999995 78888754
No 249
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.58 E-value=1.3 Score=41.68 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=30.0
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 5 ~~-~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 5 LQ-GKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred CC-CCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 44 67899999 66999999999999998 88888755
No 250
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.58 E-value=1.3 Score=44.14 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=29.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.+||+|-+|..++.+|+..|. .++++|.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 379999999999999999999996 788888653
No 251
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=89.49 E-value=1.7 Score=42.80 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHh
Q 013224 40 YARILVVGAGGLGCELLKDLALS 62 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~ 62 (447)
..||.|||+|.+|..++++|...
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~ 28 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG 28 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc
Confidence 57899999999999999999864
No 252
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=89.47 E-value=1.9 Score=42.54 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=27.8
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+|+|.| +|.+|..+++.|+..|. +++++|...
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~~ 34 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRPT 34 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEecC
Confidence 699999 59999999999999995 788888653
No 253
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.44 E-value=0.64 Score=44.50 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=31.7
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
|. +.+|+|+|+ ||||..+++.|+..|. ++.++|.+.-
T Consensus 5 ~~-~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~ 42 (255)
T PRK06057 5 LA-GRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPE 42 (255)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence 66 789999997 9999999999999996 7888876543
No 254
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.42 E-value=0.51 Score=48.82 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=30.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999996 899999876
No 255
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.42 E-value=0.54 Score=46.90 Aligned_cols=32 Identities=31% Similarity=0.597 Sum_probs=29.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
.||.|||+|.+|..++..|+..|.+++.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 48999999999999999999998669999996
No 256
>PRK06196 oxidoreductase; Provisional
Probab=89.42 E-value=1.6 Score=43.44 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=30.0
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. ..+|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 24 l~-~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~ 59 (315)
T PRK06196 24 LS-GKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR 59 (315)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56 678999996 8999999999999997 67787754
No 257
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=89.41 E-value=0.71 Score=44.18 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=31.2
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
+. +.+|+|.|+ |++|.++++.|+..|. ++.++|.+.-
T Consensus 4 l~-~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~ 41 (257)
T PRK07067 4 LQ-GKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPA 41 (257)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHH
Confidence 45 678999995 9999999999999997 6888886653
No 258
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.39 E-value=1.3 Score=41.55 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=27.8
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~ 39 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY-KVAITARD 39 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCC
Confidence 578999995 8999999999999997 57777643
No 259
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=89.37 E-value=0.59 Score=46.41 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=31.3
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE 76 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve 76 (447)
.|+|||+|-.|+.+|..|++.|. +++|+|.+.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence 48999999999999999999998 99999999554
No 260
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.32 E-value=0.57 Score=46.78 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=32.0
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. .++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus 150 l~-g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IH-GSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CC-CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 46 8999999999999999999999997 99999865
No 261
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.28 E-value=1.3 Score=42.24 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=29.4
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|. +.+|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 5 l~-~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~ 40 (253)
T PRK06172 5 FS-GKVALVTGGAAGIGRATALAFAREGA-KVVVADRD 40 (253)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 45 689999995 7999999999999996 68887754
No 262
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=89.24 E-value=0.56 Score=46.51 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=28.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|+|||+|-.|+.+|..|++.|+ +++|+|...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI-DVTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhccc-ccccchhcc
Confidence 479999999999999999999998 699999754
No 263
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.22 E-value=0.58 Score=46.30 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=29.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 489999999999999999999996 79999955
No 264
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.20 E-value=1.8 Score=47.07 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=30.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|..|-..|..|++.|. +++++|...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 6799999999999999999999998 699998543
No 265
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=89.18 E-value=0.5 Score=47.50 Aligned_cols=33 Identities=36% Similarity=0.640 Sum_probs=30.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFK-NLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg-~i~lvD~D 73 (447)
.||.|||+|.+|+.+|..|+.-+++ ++.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 3899999999999999999999999 99999943
No 266
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=89.17 E-value=2.6 Score=41.17 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=25.5
Q ss_pred eEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeC
Q 013224 42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDM 72 (447)
Q Consensus 42 ~VlvvG~-GglG~eiak~La~~Gv-g~i~lvD~ 72 (447)
+|+|.|+ |.+|.++++.|...|- .+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899995 9999999999999873 36777764
No 267
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.13 E-value=1.8 Score=45.94 Aligned_cols=33 Identities=33% Similarity=0.415 Sum_probs=30.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|||+|..|.+.|..|++.|. +++|+|..
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~ 173 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGV-QVVVFDRH 173 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Confidence 6799999999999999999999998 58998865
No 268
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=89.12 E-value=1.8 Score=41.39 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=23.7
Q ss_pred eEEEEcCchHHHHHHHHHHHhC---CCeEEEEeCCc
Q 013224 42 RILVVGAGGLGCELLKDLALSG---FKNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~G---vg~i~lvD~D~ 74 (447)
+|.|||||+||..+++.+- -| +.-+.+.|.+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D~~~ 36 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVR-DGRVDFELVAVYDRDE 36 (255)
T ss_pred eEEEEeccHHHHHHHHHHh-cCCcceeEEEEecCCH
Confidence 7999999999999998764 44 55555555443
No 269
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=89.11 E-value=0.79 Score=45.84 Aligned_cols=68 Identities=26% Similarity=0.376 Sum_probs=45.9
Q ss_pred EEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhC----CceEEEEEeccC
Q 013224 45 VVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV----SGVNIVPHFCRI 119 (447)
Q Consensus 45 vvG~GglG~eiak~La~~Gv-g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~n----p~v~i~~~~~~i 119 (447)
|||+|.+|+.+|..|+..|+ .+|.|+|-. +.|++..+.-|+... ..++|..
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~----- 56 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN-------------------KDKAEGEAMDLQHAASFLPTPKKIRS----- 56 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CChhhHHHHHHHHhhcccCCCeEEec-----
Confidence 68999999999999999998 579999841 224444444454432 2234431
Q ss_pred ccchhhccCCceEEEcccC
Q 013224 120 EDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~D 138 (447)
.+.+-++++|+||.+..
T Consensus 57 --~~~~~~~daDivVitag 73 (299)
T TIGR01771 57 --GDYSDCKDADLVVITAG 73 (299)
T ss_pred --CCHHHHCCCCEEEECCC
Confidence 22456889999987644
No 270
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.08 E-value=0.72 Score=45.80 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=30.9
Q ss_pred HHhcCCeEEEEcCch-HHHHHHHHHHHhCCCeEEEEeC
Q 013224 36 DLQEYARILVVGAGG-LGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 36 ~L~~~~~VlvvG~Gg-lG~eiak~La~~Gvg~i~lvD~ 72 (447)
.|. .++|+|||.|. +|..+++.|...|. .+++++.
T Consensus 155 ~l~-Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s 190 (286)
T PRK14175 155 DLE-GKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHS 190 (286)
T ss_pred CCC-CCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeC
Confidence 377 89999999999 99999999999985 7888873
No 271
>PRK07024 short chain dehydrogenase; Provisional
Probab=89.08 E-value=1.3 Score=42.37 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=28.6
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789988 78999999999999997 78888864
No 272
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.08 E-value=1.8 Score=41.74 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=28.9
Q ss_pred HhcCCeEEEEcC---chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGA---GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~---GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
+. +..++|.|+ +|||.++++.|+..|. ++.+++.
T Consensus 5 ~~-~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r 41 (257)
T PRK08594 5 LE-GKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYA 41 (257)
T ss_pred cC-CCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecC
Confidence 45 789999998 5999999999999997 6777754
No 273
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.02 E-value=1.6 Score=44.50 Aligned_cols=39 Identities=10% Similarity=-0.030 Sum_probs=29.6
Q ss_pred hhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 124 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 124 ~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
.++++++|+|++|+.....+.....+. +++++.|+.+..
T Consensus 73 ~el~~~vDVVIdaT~~~~~~e~a~~~~--------------~aGk~VI~~~~~ 111 (341)
T PRK04207 73 EDLLEKADIVVDATPGGVGAKNKELYE--------------KAGVKAIFQGGE 111 (341)
T ss_pred hHhhccCCEEEECCCchhhHHHHHHHH--------------HCCCEEEEcCCC
Confidence 445678999999999887777666444 678898888754
No 274
>PLN02206 UDP-glucuronate decarboxylase
Probab=88.99 E-value=2.5 Score=44.62 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.9
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
..||||.| .|-+|+.+++.|...|. ++.++|.
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 67999999 59999999999999996 6777764
No 275
>PRK06949 short chain dehydrogenase; Provisional
Probab=88.94 E-value=1.9 Score=41.01 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=29.7
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 7 ~~-~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~ 42 (258)
T PRK06949 7 LE-GKVALVTGASSGLGARFAQVLAQAGA-KVVLASRR 42 (258)
T ss_pred CC-CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 55 789999995 9999999999999997 67777654
No 276
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=88.89 E-value=0.53 Score=49.47 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=29.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|+|||+|-.||++|..|++.|+ +++|+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeccc
Confidence 379999999999999999999997 789998543
No 277
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.88 E-value=1.5 Score=44.72 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=57.5
Q ss_pred CCeEEEEcC-chHHHHHHHHHHH-hCC--CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 40 YARILVVGA-GGLGCELLKDLAL-SGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~-~Gv--g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
..+|.|||+ |-+|.++++.|.. -.+ ++|.++.. +...|+.= .++ ...+.+..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS---------------~~saGk~~------~~~--~~~l~v~~- 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS---------------KRSAGKTV------QFK--GREIIIQE- 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC---------------cccCCCCe------eeC--CcceEEEe-
Confidence 569999997 8889999999984 554 34555532 33445431 000 11122221
Q ss_pred eccCccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 116 ~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
.+.+-++++|+|+.|+.+-.++.+...+. +.+.++||-+
T Consensus 61 ------~~~~~~~~~Divf~a~~~~~s~~~~~~~~--------------~~G~~VID~S 99 (347)
T PRK06728 61 ------AKINSFEGVDIAFFSAGGEVSRQFVNQAV--------------SSGAIVIDNT 99 (347)
T ss_pred ------CCHHHhcCCCEEEECCChHHHHHHHHHHH--------------HCCCEEEECc
Confidence 12223478999999999888888887765 4577777664
No 278
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.87 E-value=0.62 Score=46.19 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=29.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|-+|+.+|..|+.+|. +++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 589999999999999999999996 889998643
No 279
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.86 E-value=1.7 Score=43.89 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=29.9
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 5 l~-~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~ 40 (330)
T PRK06139 5 LH-GAVVVITGASSGIGQATAEAFARRGA-RLVLAARD 40 (330)
T ss_pred CC-CCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 55 789999997 8999999999999997 67787753
No 280
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=88.84 E-value=2.2 Score=41.86 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHh
Q 013224 41 ARILVVGAGGLGCELLKDLALS 62 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~ 62 (447)
.||.|+|+|.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 4899999999999999999875
No 281
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=88.79 E-value=2.2 Score=41.55 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=29.3
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+|+|||+|..|.+.|..|.+.|. +++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANL-KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEeccC
Confidence 69999999999999999999997 599999754
No 282
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.74 E-value=2.2 Score=46.85 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=58.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
+.+|+|+|.|.+|..+++.|...|+ +++++|.|.- +++ .+++. + ..++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g--~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKY--G--YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhC--C--CeEEEeeC
Confidence 4699999999999999999999998 7899997751 222 22222 2 33444444
Q ss_pred ccch---hhccCCceEEEcccCCHHHHHHHHHHHH
Q 013224 120 EDKD---ISFYNDFNIIVLGLDSIEARSYINAVAC 151 (447)
Q Consensus 120 ~~~~---~~~~~~~DvVi~~~Dn~~~r~~in~~~~ 151 (447)
.+.. ..-++++|.||.++|+.+.-..+-..++
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r 486 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQ 486 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHH
Confidence 4322 2335789999999999877666655554
No 283
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=88.74 E-value=1.6 Score=35.75 Aligned_cols=80 Identities=21% Similarity=0.496 Sum_probs=49.7
Q ss_pred CCeEEEEcCchHHHHHHHH-HHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGAGGLGCELLKD-LALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~-La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..+|+|+|+|++|..++.+ ....|++-..++|.|. ..+.+... ++.|.. .
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~---~~~G~~i~-----------------------gipV~~---~ 53 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP---EKIGKEIG-----------------------GIPVYG---S 53 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT---TTTTSEET-----------------------TEEEES---S
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC---CccCcEEC-----------------------CEEeec---c
Confidence 6799999999999988743 4468888888988432 22222211 233321 1
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
+.+. .++. +.|+.|.++-...++....+++
T Consensus 54 ~~~l-~~~~-~i~iaii~VP~~~a~~~~~~~~ 83 (96)
T PF02629_consen 54 MDEL-EEFI-EIDIAIITVPAEAAQEVADELV 83 (96)
T ss_dssp HHHH-HHHC-TTSEEEEES-HHHHHHHHHHHH
T ss_pred HHHh-hhhh-CCCEEEEEcCHHHHHHHHHHHH
Confidence 2221 2223 3788888887777777777666
No 284
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.72 E-value=2.7 Score=41.73 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=50.5
Q ss_pred HHhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 36 DLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 36 ~L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
.|. +.+++|.|+ ||||.++++.|+..|. ++.++|... ..+++.+++.+++.. .++..
T Consensus 9 ~l~-~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~------------------~~~~~~~~~~i~~~g--~~~~~ 66 (306)
T PRK07792 9 DLS-GKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS------------------ALDASDVLDEIRAAG--AKAVA 66 (306)
T ss_pred CCC-CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc------------------hhHHHHHHHHHHhcC--CeEEE
Confidence 366 789999994 7899999999999997 677766421 123444555555433 34555
Q ss_pred EeccCccch---------hhccCCceEEEcc
Q 013224 115 HFCRIEDKD---------ISFYNDFNIIVLG 136 (447)
Q Consensus 115 ~~~~i~~~~---------~~~~~~~DvVi~~ 136 (447)
+..++.+.. .+ +...|+||++
T Consensus 67 ~~~Dv~d~~~~~~~~~~~~~-~g~iD~li~n 96 (306)
T PRK07792 67 VAGDISQRATADELVATAVG-LGGLDIVVNN 96 (306)
T ss_pred EeCCCCCHHHHHHHHHHHHH-hCCCCEEEEC
Confidence 666665411 12 4567888775
No 285
>PLN02852 ferredoxin-NADP+ reductase
Probab=88.72 E-value=2 Score=45.96 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHH--hCCCeEEEEeCCccCcccCccc
Q 013224 40 YARILVVGAGGLGCELLKDLAL--SGFKNLEVIDMDRIEVSNLNRQ 83 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~--~Gvg~i~lvD~D~Ve~sNL~Rq 83 (447)
..+|+|||+|.-|.+.|..|+. .|. +|+|+|... .+-.|.|.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p-~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP-TPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC-CCcceEee
Confidence 5789999999999999999997 565 899999765 34445554
No 286
>PRK05855 short chain dehydrogenase; Validated
Probab=88.72 E-value=1.6 Score=46.84 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=32.1
Q ss_pred HHHHHHhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 32 ELRDDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 32 ~~q~~L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
..+..++ +.+++|+|+ ||||.++++.|+..|. ++.+++.
T Consensus 308 ~~~~~~~-~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r 347 (582)
T PRK05855 308 RPRGPFS-GKLVVVTGAGSGIGRETALAFAREGA-EVVASDI 347 (582)
T ss_pred cccccCC-CCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3345577 889999995 9999999999999998 4777774
No 287
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.68 E-value=0.62 Score=45.86 Aligned_cols=33 Identities=27% Similarity=0.605 Sum_probs=29.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|-+|+.++..|+..|. +++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 489999999999999999999997 899998553
No 288
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=88.65 E-value=0.72 Score=46.95 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNL 80 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL 80 (447)
+.+|+|||+|-+|+.+|..|++.|. +|+++|.+.+...+-
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s 43 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA 43 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence 6899999999999999999999999 999999888855333
No 289
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=88.64 E-value=1.2 Score=43.57 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gv---g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
+.||.|||+|-+|+.+++.|...|. .++.+.|.+.-. .+ +..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~-- 47 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVY-- 47 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEE--
Confidence 5789999999999999999999884 236666543210 00 011
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
...+.+..+++|+||.|+-....+..+.++.
T Consensus 48 ---~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 48 ---LQSNEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred ---eCChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1123344568899999988888887777654
No 290
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.63 E-value=0.62 Score=46.62 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=29.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|-+|+.++.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999997 799999764
No 291
>PRK12939 short chain dehydrogenase; Provisional
Probab=88.63 E-value=2.2 Score=40.30 Aligned_cols=34 Identities=38% Similarity=0.471 Sum_probs=28.2
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
+. +.+|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 ~~-~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r 39 (250)
T PRK12939 5 LA-GKRALVTGAARGLGAAFAEALAEAGA-TVAFNDG 39 (250)
T ss_pred CC-CCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeC
Confidence 44 689999995 8999999999999997 5666653
No 292
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.57 E-value=0.62 Score=47.30 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=62.6
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
.|. .++|.|||+|.+|.++|+.|...|. ++..+|...- + ... ... .+ .
T Consensus 147 ~L~-gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~-------------------~-~~~----~~~--~~--~-- 194 (333)
T PRK13243 147 DVY-GKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK-------------------P-EAE----KEL--GA--E-- 194 (333)
T ss_pred CCC-CCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC-------------------h-hhH----HHc--CC--E--
Confidence 588 9999999999999999999999987 6777775210 0 000 011 01 1
Q ss_pred eccCccchhhccCCceEEEcccC-CHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeec
Q 013224 116 FCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (447)
Q Consensus 116 ~~~i~~~~~~~~~~~DvVi~~~D-n~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~ 176 (447)
. ....++++++|+|+.++- +.+++..+|+..... .+.+.-+|+.+..
T Consensus 195 ---~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~----------mk~ga~lIN~aRg 242 (333)
T PRK13243 195 ---Y-RPLEELLRESDFVSLHVPLTKETYHMINEERLKL----------MKPTAILVNTARG 242 (333)
T ss_pred ---e-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhc----------CCCCeEEEECcCc
Confidence 0 123467888999988754 567888887655432 1446667777643
No 293
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=88.51 E-value=3.3 Score=42.27 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=53.5
Q ss_pred eEEEEcCchHHHHHHHHHHHhCC-------CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhh--C----C
Q 013224 42 RILVVGAGGLGCELLKDLALSGF-------KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER--V----S 108 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gv-------g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~--n----p 108 (447)
||.|+|+|..|+.+|..|+..|. .++++...+. ++-.. ...+.+++. | |
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~~~---~~~~~in~~~~n~~ylp 62 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIEGR---NLTEIINTTHENVKYLP 62 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccCCH---HHHHHHHhcCCCccccC
Confidence 68999999999999999999882 3677765421 11000 112222221 1 2
Q ss_pred ceEEEEEeccC--ccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 109 GVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 109 ~v~i~~~~~~i--~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
++++ +..+ .....+.++++|+||.++-+...|..+.++.
T Consensus 63 gi~L---p~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~ 103 (342)
T TIGR03376 63 GIKL---PANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLK 103 (342)
T ss_pred CCcC---CCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHH
Confidence 2111 1111 1223456789999999999888887777665
No 294
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.43 E-value=1.6 Score=41.67 Aligned_cols=35 Identities=31% Similarity=0.534 Sum_probs=29.7
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++ ..+|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 5 ~~-~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~ 40 (262)
T PRK13394 5 LN-GKTAVVTGAASGIGKEIALELARAGA-AVAIADLN 40 (262)
T ss_pred CC-CCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence 45 678999996 9999999999999997 67777754
No 295
>PLN02928 oxidoreductase family protein
Probab=88.41 E-value=0.43 Score=48.76 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=64.3
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceE-EE
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVN-IV 113 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~-i~ 113 (447)
..|. .++|.|||+|.+|.++|+.|...|. ++..+|... . +.. ....|. +. +.+. +.
T Consensus 155 ~~l~-gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~-~-----~~~---~~~~~~-~~-----------~~~~~~~ 211 (347)
T PLN02928 155 DTLF-GKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW-T-----SEP---EDGLLI-PN-----------GDVDDLV 211 (347)
T ss_pred cCCC-CCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-C-----hhh---hhhhcc-cc-----------ccccccc
Confidence 3588 9999999999999999999998887 788877521 0 000 000000 00 0000 00
Q ss_pred EEeccCccchhhccCCceEEEccc-CCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 114 PHFCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 114 ~~~~~i~~~~~~~~~~~DvVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
...... ..-+++++++|+|+.++ .+.+++..+|+...... +.+.-+|+.+
T Consensus 212 ~~~~~~-~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~M----------k~ga~lINva 262 (347)
T PLN02928 212 DEKGGH-EDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSM----------KKGALLVNIA 262 (347)
T ss_pred cccCcc-cCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcC----------CCCeEEEECC
Confidence 000011 12357889999998885 46788988987765322 3456677775
No 296
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=88.33 E-value=0.66 Score=47.19 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=30.1
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 7999998654
No 297
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=88.15 E-value=1.6 Score=40.83 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=28.9
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 578999995 99999999999999985 8888765
No 298
>PRK12829 short chain dehydrogenase; Provisional
Probab=88.15 E-value=1.8 Score=41.23 Aligned_cols=37 Identities=32% Similarity=0.532 Sum_probs=31.3
Q ss_pred HHHhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 35 ~~L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..++ +.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 7 ~~~~-~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~ 44 (264)
T PRK12829 7 KPLD-GLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVS 44 (264)
T ss_pred hccC-CCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3467 89999999 59999999999999997 58888743
No 299
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.15 E-value=2.7 Score=42.48 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=29.7
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 6 l~-~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~ 41 (334)
T PRK07109 6 IG-RQVVVITGASAGVGRATARAFARRGA-KVVLLARG 41 (334)
T ss_pred CC-CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 55 678999995 9999999999999996 68887743
No 300
>PRK06046 alanine dehydrogenase; Validated
Probab=88.15 E-value=2.3 Score=43.04 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=52.0
Q ss_pred CCeEEEEcCchHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La-~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..+|.|+|+|+.|-..+.+|. ..++..+.++|.+. .+++.+++.+++..+ +++..+.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~~-~~v~~~~-- 186 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVVG-CDVTVAE-- 186 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEeC--
Confidence 578999999999999999998 45788888887543 366666666655432 3444332
Q ss_pred CccchhhccCCceEEEcccCC
Q 013224 119 IEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn 139 (447)
...+.++ .|+|+.|+-+
T Consensus 187 ---~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 ---DIEEACD-CDILVTTTPS 203 (326)
T ss_pred ---CHHHHhh-CCEEEEecCC
Confidence 1233455 8999999865
No 301
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.12 E-value=2.8 Score=46.35 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=30.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|..|-..|..|++.|. +++|+|...
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 6899999999999999999999998 699998654
No 302
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.10 E-value=2.1 Score=40.93 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=29.4
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|. +.+|+|.| .||+|..+++.|+..|. ++.+++.+
T Consensus 13 l~-~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~ 48 (258)
T PRK06935 13 LD-GKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG 48 (258)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 66 78999999 58999999999999997 56676654
No 303
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=88.09 E-value=3.1 Score=39.62 Aligned_cols=35 Identities=37% Similarity=0.430 Sum_probs=30.5
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. ..+|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 9 ~~-~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 9 LA-GQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 55 78999999 58999999999999997 78888865
No 304
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=88.09 E-value=0.65 Score=45.53 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=58.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeE---EEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE-
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNL---EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH- 115 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i---~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~- 115 (447)
..||.|||||.||..+++.|..-+...+ .+.|.+.-...++ .++.++-.--+.+....|++-|++-
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL----------AGRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh----------hccCcccCCHHHHhhcCCCEEEECCC
Confidence 4689999999999999999865433222 3334332111111 1112222112333345677777653
Q ss_pred eccCccchhhccC-CceEEEcc---cCCHHHHHHHHHHHH
Q 013224 116 FCRIEDKDISFYN-DFNIIVLG---LDSIEARSYINAVAC 151 (447)
Q Consensus 116 ~~~i~~~~~~~~~-~~DvVi~~---~Dn~~~r~~in~~~~ 151 (447)
+.-+.++...+++ +.|+|+.. +-+.+.+..+-+.|.
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~ 111 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAE 111 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHH
Confidence 3334566677776 78998765 445566777777774
No 305
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.03 E-value=0.72 Score=47.56 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=31.7
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. ..+|+|+|+|.+|..+++.|..+|+ +++++|.+
T Consensus 165 l~-~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VE-PGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CC-CceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 45 7889999999999999999999998 69999964
No 306
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.03 E-value=2.9 Score=44.13 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=30.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|||+|..|.+.|..|++.|. +++|+|..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 6799999999999999999999997 79999964
No 307
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=87.97 E-value=3.4 Score=42.78 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=28.1
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|+|+ |.+|..+++.|...|. ++++++.+
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~ 93 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGY-NVVAVARE 93 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEec
Confidence 568999996 9999999999999996 67777654
No 308
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=87.93 E-value=1.9 Score=36.42 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=48.0
Q ss_pred cCchHHHHHHHHHHHh----CCCeEEEEeCC-ccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 47 GAGGLGCELLKDLALS----GFKNLEVIDMD-RIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 47 G~GglG~eiak~La~~----Gvg~i~lvD~D-~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
|+|.+|..+++.|... ++.-..|.|.+ .++.. ..... +...+. .
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~-----------------------~~~~~-~~~~~~-------~ 49 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKD-----------------------WAASF-PDEAFT-------T 49 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETT-----------------------HHHHH-THSCEE-------S
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhh-----------------------hhhhc-cccccc-------C
Confidence 8999999999999976 45556666655 11111 11111 111111 1
Q ss_pred chhhccC--CceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 122 KDISFYN--DFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 122 ~~~~~~~--~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
...++++ ..|+||+|+.+..+..++-.+. ++++.+|.+..
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L--------------~~G~~VVt~nk 91 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYYEKAL--------------ERGKHVVTANK 91 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHHHHHH--------------HTTCEEEES-H
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHHHHHH--------------HCCCeEEEECH
Confidence 1234455 7999999988877777776665 57888886643
No 309
>PRK08303 short chain dehydrogenase; Provisional
Probab=87.92 E-value=3.4 Score=41.22 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=30.2
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|+ +..++|.|+ +|||.++++.|+..|. ++.+++.+
T Consensus 6 l~-~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 6 LR-GKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 56 789999997 6899999999999997 78888765
No 310
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.91 E-value=2.5 Score=41.04 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=29.1
Q ss_pred HhcCCeEEEEcCc---hHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGAG---GLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~G---glG~eiak~La~~Gvg~i~lvD~ 72 (447)
+. +..++|.|++ |+|.++++.|+..|. ++.++|.
T Consensus 4 l~-~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r 40 (262)
T PRK07984 4 LS-GKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQ 40 (262)
T ss_pred cC-CCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEec
Confidence 55 7889999996 799999999999997 5777764
No 311
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=87.90 E-value=0.61 Score=47.05 Aligned_cols=32 Identities=44% Similarity=0.684 Sum_probs=29.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.||.|||+|.+|+.++..|+.+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 589999999999999999999995 78998864
No 312
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.86 E-value=1.1 Score=42.85 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=29.8
Q ss_pred HhcCCeEEEEcCc---hHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGAG---GLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~G---glG~eiak~La~~Gvg~i~lvD~D 73 (447)
|+ ..+|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 3 l~-~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LM-KKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CC-CcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 44 6789999985 799999999999997 78888764
No 313
>PRK07102 short chain dehydrogenase; Provisional
Probab=87.79 E-value=3.2 Score=39.23 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=27.5
Q ss_pred CeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.+|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 4789999 69999999999999996 68888754
No 314
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=87.79 E-value=3.2 Score=48.12 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=55.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHH---HHHhhCCceEEEEEe
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK---RVMERVSGVNIVPHF 116 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~---~l~~~np~v~i~~~~ 116 (447)
..||+|||+|.-|...|..|++.|. +++|+|... .+.-+.-|.--+.-.+|. ++.. .++++ ++++....
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~~-vi~~~i~~l~~~--Gv~f~~n~ 377 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPNQ-LIDDVVEKIKLL--GGRFVKNF 377 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChHH-HHHHHHHHHHhh--cCeEEEeE
Confidence 6899999999999999999999997 799998642 233222233222223442 3333 34443 34443321
Q ss_pred ccCccc-hhhccC-CceEEEcccCC
Q 013224 117 CRIEDK-DISFYN-DFNIIVLGLDS 139 (447)
Q Consensus 117 ~~i~~~-~~~~~~-~~DvVi~~~Dn 139 (447)
.-=.+. ..++.+ +||.||.|+..
T Consensus 378 ~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 378 VVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeccEEeHHHhccccCCEEEEeCCC
Confidence 100111 133444 69999998776
No 315
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.73 E-value=1.8 Score=43.08 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+|.+||+|.+|..++++|+..|. ++++.|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999997 688888653
No 316
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=87.68 E-value=0.59 Score=48.41 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=62.9
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCC-CC--CCChHHHHHHHHHHhhCCc
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRM-ED--VGKPKAEVAAKRVMERVSG 109 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg--~i~lvD~D~Ve~sNL~RqfLf~~-~d--iG~~Ka~~a~~~l~~~np~ 109 (447)
++|+ +.||++.|+|+-|+.+++.|..+|+. +|.++|.-=+ ++.. .| .++.|.+.+.+.......
T Consensus 195 k~l~-d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~~- 263 (432)
T COG0281 195 KKLK-DQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERTL- 263 (432)
T ss_pred CCcc-ceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc---------ccCCCcccccchHHHHHHHhhhccccc-
Confidence 5788 99999999999999999999999997 9999996543 3322 23 467777766544443321
Q ss_pred eEEEEEeccCccchhhccCCceEEEcccC-CHHHHHHHHHHH
Q 013224 110 VNIVPHFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVA 150 (447)
Q Consensus 110 v~i~~~~~~i~~~~~~~~~~~DvVi~~~D-n~~~r~~in~~~ 150 (447)
.+-+.+.|+.|.+.. ..-+..++-+++
T Consensus 264 --------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma 291 (432)
T COG0281 264 --------------DLALAGADVLIGVSGVGAFTEEMVKEMA 291 (432)
T ss_pred --------------cccccCCCEEEEcCCCCCcCHHHHHHhc
Confidence 113457787777655 333455666665
No 317
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=87.65 E-value=1.3 Score=45.87 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=51.2
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCC------eEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhC-Cce-
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFK------NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGV- 110 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg------~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~n-p~v- 110 (447)
-.||.|||+ |.+|+.+|-.|+..|+- .|+|+|.| +-+.|++.-+--|.... |..
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~ 106 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLR 106 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcC
Confidence 469999999 99999999999999984 36666543 33445555555555433 332
Q ss_pred EEEEEeccCccchhhccCCceEEEcccC
Q 013224 111 NIVPHFCRIEDKDISFYNDFNIIVLGLD 138 (447)
Q Consensus 111 ~i~~~~~~i~~~~~~~~~~~DvVi~~~D 138 (447)
++... ..+.+-++++|+||.+-.
T Consensus 107 ~v~i~-----~~~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 107 EVSIG-----IDPYEVFEDADWALLIGA 129 (387)
T ss_pred ceEEe-----cCCHHHhCCCCEEEECCC
Confidence 22211 223466889999988644
No 318
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.50 E-value=0.85 Score=45.72 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=29.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
.||.|||+|-+|+.+|..|+..|.+++.++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999999999878999995
No 319
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.49 E-value=1.3 Score=48.13 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=59.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCcc---ccCCC---------CCCC----------CCh-HH
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNR---QFLFR---------MEDV----------GKP-KA 96 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~R---qfLf~---------~~di----------G~~-Ka 96 (447)
+-+|+|+|+|.+|.++++.|...|. ++.+||.|.-....+.+ +..+. +..+ +.. ..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHH
Confidence 4799999999999999999999996 78999988644333321 11111 1111 111 12
Q ss_pred HHHHHHHHhhCCceEEEEEeccCccchhhcc--CCceEEEcc
Q 013224 97 EVAAKRVMERVSGVNIVPHFCRIEDKDISFY--NDFNIIVLG 136 (447)
Q Consensus 97 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~--~~~DvVi~~ 136 (447)
......+++.||++++.+...+.. +.+.+ .+.|.|++.
T Consensus 496 ~~iv~~~~~~~~~~~iiar~~~~~--~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 496 GEIVASAREKRPDIEIIARAHYDD--EVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHCCCCeEEEEECCHH--HHHHHHHcCCCEEECh
Confidence 224455678899988887654322 22222 467888865
No 320
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.49 E-value=2.3 Score=41.84 Aligned_cols=80 Identities=16% Similarity=0.318 Sum_probs=51.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gv---g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
+.+|.+||+|-+|..+++.|...|+ .+|.+.|.+. .+++. +.+.. ++++ .
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~-------------------~~~~~----l~~~~-g~~~--~- 54 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV-------------------SNLKN----ASDKY-GITI--T- 54 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH-------------------HHHHH----HHHhc-CcEE--e-
Confidence 4689999999999999999999985 2466655321 23222 22211 2222 1
Q ss_pred ccCccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
..+.+..+++|+||.|+-....+..++.+.
T Consensus 55 ----~~~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 55 ----TNNNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred ----CCcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 123345678899999988766776666654
No 321
>PRK08818 prephenate dehydrogenase; Provisional
Probab=87.47 E-value=1.9 Score=44.46 Aligned_cols=33 Identities=21% Similarity=0.085 Sum_probs=27.6
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
+.+|+|||+ |.+|..+++.|-...-.+|+.+|.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 679999999 999999999998653336777876
No 322
>PRK06720 hypothetical protein; Provisional
Probab=87.45 E-value=4.1 Score=37.11 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=29.7
Q ss_pred HhcCCeEEEEcCc-hHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGAG-GLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~G-glG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +..++|.|++ |+|.++++.|+..|. ++.++|.+
T Consensus 14 l~-gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~ 49 (169)
T PRK06720 14 LA-GKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDID 49 (169)
T ss_pred cC-CCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 66 7899999965 699999999999994 78888855
No 323
>PLN02256 arogenate dehydrogenase
Probab=87.44 E-value=0.84 Score=45.79 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=28.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
..+|.|||+|.+|..+++.|...|. +|.++|.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~ 67 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR 67 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 6789999999999999999999885 7888874
No 324
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.44 E-value=0.82 Score=46.07 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=29.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|.|+|+|.+|+.++..|+..|. +++++|.+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3589999999999999999999996 68888864
No 325
>PLN00106 malate dehydrogenase
Probab=87.38 E-value=0.99 Score=45.70 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=31.3
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gv-g~i~lvD~D~ 74 (447)
..||+|+|+ |.+|+.++..|+..|. .+|.|+|-+.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 679999999 9999999999999887 5799999654
No 326
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=87.27 E-value=2.7 Score=41.78 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+|+|.| .|++|+.+++.|+..|. ++.+++.|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 56899999 59999999999999996 56665544
No 327
>PRK08264 short chain dehydrogenase; Validated
Probab=87.23 E-value=0.86 Score=42.93 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=31.7
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+. +.+|+|.| .|++|.++++.|+..|..++.+++.+.
T Consensus 4 ~~-~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 4 IK-GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 44 78999999 599999999999999987888887653
No 328
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.22 E-value=0.85 Score=45.88 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=28.4
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+|.|+|+|++|+.++..|+.+|. ++++++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence 69999999999999999999994 788888654
No 329
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=87.21 E-value=2.6 Score=39.80 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=28.3
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~ 36 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLN 36 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 78999999 58899999999999997 67777644
No 330
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=87.19 E-value=0.89 Score=46.14 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=51.7
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
..|+ +.+|.|||+|.+|..+|++|..+|+ ++.+.+... .|+...+ .+. ++.+
T Consensus 13 ~~L~-gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~-------------------~~s~~~A---~~~--G~~~-- 64 (330)
T PRK05479 13 SLIK-GKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREG-------------------SKSWKKA---EAD--GFEV-- 64 (330)
T ss_pred hhhC-CCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCc-------------------hhhHHHH---HHC--CCee--
Confidence 4577 8999999999999999999999998 565554221 1111111 111 1211
Q ss_pred EeccCccchhhccCCceEEEcccCCHHHHHHHH
Q 013224 115 HFCRIEDKDISFYNDFNIIVLGLDSIEARSYIN 147 (447)
Q Consensus 115 ~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in 147 (447)
. ...+..+++|+|+.++-+...+..++
T Consensus 65 -----~-s~~eaa~~ADVVvLaVPd~~~~~V~~ 91 (330)
T PRK05479 65 -----L-TVAEAAKWADVIMILLPDEVQAEVYE 91 (330)
T ss_pred -----C-CHHHHHhcCCEEEEcCCHHHHHHHHH
Confidence 1 23467788999999987666665553
No 331
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.16 E-value=1.8 Score=37.71 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=43.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
..||.|||+|-+|..+++.|..+|. +|.-+ |. +....++++.++-+...+..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~~----- 61 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-EVVGV---------------YS-------RSPASAERAAAFIGAGAILD----- 61 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------SS-------CHH-HHHHHHC--TT----------
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------Ee-------CCcccccccccccccccccc-----
Confidence 5689999999999999999999996 44432 11 12234444444444433321
Q ss_pred ccchhhccCCceEEEcccCCHHHHHHHHHHHHhhc
Q 013224 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFL 154 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~ 154 (447)
..+..+.+|+|+.++-+-. |...|..|.
T Consensus 62 ---~~~~~~~aDlv~iavpDda----I~~va~~La 89 (127)
T PF10727_consen 62 ---LEEILRDADLVFIAVPDDA----IAEVAEQLA 89 (127)
T ss_dssp ---TTGGGCC-SEEEE-S-CCH----HHHHHHHHH
T ss_pred ---cccccccCCEEEEEechHH----HHHHHHHHH
Confidence 2345678999988854433 444444443
No 332
>PRK13018 cell division protein FtsZ; Provisional
Probab=87.14 E-value=0.73 Score=47.60 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=37.2
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCc--cCcccCccccCCC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDR--IEVSNLNRQFLFR 87 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg--~i~lvD~D~--Ve~sNL~RqfLf~ 87 (447)
.. ..+|.|||+||-||.++.+|...|+. .+..++-|. ++.+...+-.++.
T Consensus 26 ~~-~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a~~ki~iG 79 (378)
T PRK13018 26 FG-NPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKADKKILIG 79 (378)
T ss_pred cC-CCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEecC
Confidence 44 68999999999999999999999986 456677777 4444444444443
No 333
>PRK06198 short chain dehydrogenase; Provisional
Probab=87.13 E-value=1.6 Score=41.76 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=31.3
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+|+|.|+ |++|..+++.|+..|..++.+++.+
T Consensus 4 ~~-~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 4 LD-GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CC-CcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 55 788999995 8999999999999998768888865
No 334
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.11 E-value=0.84 Score=47.19 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.1
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
.|. .++|.|||+|.+|..+++.|...|+ ++...|+
T Consensus 113 ~L~-gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp 147 (378)
T PRK15438 113 SLH-DRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP 147 (378)
T ss_pred CcC-CCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 477 9999999999999999999999998 6777774
No 335
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.08 E-value=0.91 Score=47.50 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.7
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+. ..+|+|+|+|.+|..+++.+...|. ++.++|.|.
T Consensus 200 l~-GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IA-GKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CC-CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 35 7799999999999999999999998 788888654
No 336
>PRK05876 short chain dehydrogenase; Provisional
Probab=87.06 E-value=2.4 Score=41.40 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=29.3
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +..++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 4 ~~-~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~ 39 (275)
T PRK05876 4 FP-GRGAVITGGASGIGLATGTEFARRGA-RVVLGDVD 39 (275)
T ss_pred cC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 44 67899998 88999999999999997 67777744
No 337
>PRK09291 short chain dehydrogenase; Provisional
Probab=86.89 E-value=3.5 Score=39.18 Aligned_cols=32 Identities=34% Similarity=0.399 Sum_probs=26.0
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
..+|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r 34 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQ 34 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 357999995 8999999999999996 5555553
No 338
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.85 E-value=0.88 Score=44.81 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=28.2
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+|.|||+|.+|..+++.|...|. ++.++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 79999999999999999999996 78888864
No 339
>PRK09126 hypothetical protein; Provisional
Probab=86.84 E-value=0.79 Score=46.94 Aligned_cols=35 Identities=34% Similarity=0.555 Sum_probs=31.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
+..|+|||+|..|+.+|..|++.|+ +++|+|....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCc
Confidence 5789999999999999999999998 6899987653
No 340
>PRK08265 short chain dehydrogenase; Provisional
Probab=86.83 E-value=1.2 Score=42.92 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=31.2
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
++ +.+++|.|+ ||+|.++++.|+..|. ++.++|.+.
T Consensus 4 ~~-~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~ 40 (261)
T PRK08265 4 LA-GKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDA 40 (261)
T ss_pred CC-CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 55 789999995 9999999999999997 888888653
No 341
>PRK06199 ornithine cyclodeaminase; Validated
Probab=86.83 E-value=3.5 Score=42.72 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=60.1
Q ss_pred HHHh--cCCeEEEEcCchHHHHHHHHHHHh--CCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCce
Q 013224 35 DDLQ--EYARILVVGAGGLGCELLKDLALS--GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV 110 (447)
Q Consensus 35 ~~L~--~~~~VlvvG~GglG~eiak~La~~--Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v 110 (447)
+.|. +..++.|+|+|..+-.-++.++.. ++.+|.+.|.+ ..|++..++.+.+..+++
T Consensus 148 ~~LAr~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~-------------------~~~a~~f~~~~~~~~~~~ 208 (379)
T PRK06199 148 RHLARKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG-------------------QKSLDSFATWVAETYPQI 208 (379)
T ss_pred HHhccCCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcCCC
Confidence 4453 247899999999999999998863 48888887643 348888888888776654
Q ss_pred -EEEEEeccCccchhhccCCceEEEcccCC
Q 013224 111 -NIVPHFCRIEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 111 -~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn 139 (447)
.+.+. +...+.++++|+|+.|+-+
T Consensus 209 ~~v~~~-----~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 209 TNVEVV-----DSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred ceEEEe-----CCHHHHHcCCCEEEEccCC
Confidence 35543 2245677899999999864
No 342
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=86.82 E-value=0.95 Score=46.76 Aligned_cols=32 Identities=34% Similarity=0.531 Sum_probs=29.8
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+|+|||+|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 79999999999999999999996 799999874
No 343
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=86.81 E-value=2.4 Score=41.60 Aligned_cols=31 Identities=29% Similarity=0.557 Sum_probs=25.2
Q ss_pred CeEEEEc-CchHHHHHHHHHHH-hCCCeEEEEe
Q 013224 41 ARILVVG-AGGLGCELLKDLAL-SGFKNLEVID 71 (447)
Q Consensus 41 ~~VlvvG-~GglG~eiak~La~-~Gvg~i~lvD 71 (447)
.||.|+| +|.+|..+++.+.. .++.-+-++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3899999 59999999999985 5666666666
No 344
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=86.79 E-value=0.85 Score=46.69 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
...|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence 4579999999999999999999997 799999764
No 345
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=86.74 E-value=0.97 Score=45.83 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=31.0
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE 76 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve 76 (447)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 69999999999999999999996 79999988763
No 346
>PRK06436 glycerate dehydrogenase; Provisional
Probab=86.65 E-value=0.62 Score=46.73 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=59.9
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
..|. .++|.|||+|.+|.++|+.|...|+ ++..+|.... .. | +...
T Consensus 118 ~~L~-gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~~------------~~--~-----------------~~~~- 163 (303)
T PRK06436 118 KLLY-NKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSYV------------ND--G-----------------ISSI- 163 (303)
T ss_pred CCCC-CCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCc------------cc--C-----------------cccc-
Confidence 4688 9999999999999999998887787 7888885311 00 0 0000
Q ss_pred EeccCccchhhccCCceEEEccc-CCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 115 HFCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 115 ~~~~i~~~~~~~~~~~DvVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
+ ..-+++++++|+|+.++ ++.+++..+|+...... +.+.-+|+.+.
T Consensus 164 ~-----~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~m----------k~ga~lIN~sR 210 (303)
T PRK06436 164 Y-----MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLF----------RKGLAIINVAR 210 (303)
T ss_pred c-----CCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcC----------CCCeEEEECCC
Confidence 0 11245778889887774 45677877776543221 34556666653
No 347
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=86.63 E-value=0.82 Score=47.42 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+|+|||+|..|+..|..|++.|+ ++.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI-QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEEecC
Confidence 79999999999999999999998 68999864
No 348
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=86.63 E-value=1.5 Score=42.45 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=30.3
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++ +.+++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 8 ~~-~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 8 LK-GKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred cC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 55 788999995 8999999999999998 78888764
No 349
>PRK05717 oxidoreductase; Validated
Probab=86.63 E-value=1.3 Score=42.46 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=30.3
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+. +.+|+|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus 8 ~~-~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~ 44 (255)
T PRK05717 8 HN-GRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDR 44 (255)
T ss_pred cC-CCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 44 67899999 58999999999999995 788887643
No 350
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.61 E-value=0.36 Score=54.14 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|..|+.||..++.+|+ .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 489999999999999999999997 899999653
No 351
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.58 E-value=4.1 Score=39.02 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=29.1
Q ss_pred HHhcCCeEEEEcCc---hHHHHHHHHHHHhCCCeEEEEe
Q 013224 36 DLQEYARILVVGAG---GLGCELLKDLALSGFKNLEVID 71 (447)
Q Consensus 36 ~L~~~~~VlvvG~G---glG~eiak~La~~Gvg~i~lvD 71 (447)
+|. +.+|+|.|++ |||.++++.|+..|. ++.+++
T Consensus 3 ~l~-~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~ 39 (256)
T PRK12859 3 QLK-NKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY 39 (256)
T ss_pred CcC-CcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence 467 8899999995 899999999999997 566665
No 352
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.55 E-value=1.3 Score=41.99 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=31.4
Q ss_pred HHhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 36 ~L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.++ +.+|+|.| .|++|..+++.|+..|. ++.++|.+.
T Consensus 9 ~~~-~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~ 46 (247)
T PRK08945 9 LLK-DRIILVTGAGDGIGREAALTYARHGA-TVILLGRTE 46 (247)
T ss_pred ccC-CCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCH
Confidence 456 88999998 77899999999999997 888888753
No 353
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=86.50 E-value=3.7 Score=37.50 Aligned_cols=60 Identities=27% Similarity=0.407 Sum_probs=40.6
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
.++|.| .||||..+++.|+..|..+|.++-... .+..+.+...+.+++. ..+|..+..++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~----------------~~~~~~~~~i~~l~~~--g~~v~~~~~Dv 62 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG----------------APSAEAEAAIRELESA--GARVEYVQCDV 62 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG----------------GGSTTHHHHHHHHHHT--T-EEEEEE--T
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC----------------CccHHHHHHHHHHHhC--CCceeeeccCc
Confidence 578887 999999999999999999998875432 3344555566666664 45666665544
No 354
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=86.48 E-value=3.3 Score=41.89 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=51.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~-~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..++.|||+|..|-..++.|.. ..+.+|.+.|. ...|++..++.+++.. +++.+.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r-------------------~~~~~~~~~~~~~~~g--~~v~~~--- 183 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR-------------------TPSTREKFALRASDYE--VPVRAA--- 183 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHhhC--CcEEEe---
Confidence 5789999999999998877754 34566666653 3457777777777543 333332
Q ss_pred CccchhhccCCceEEEcccCC
Q 013224 119 IEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn 139 (447)
+...+.+++.|+|+.|+-+
T Consensus 184 --~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 184 --TDPREAVEGCDILVTTTPS 202 (325)
T ss_pred --CCHHHHhccCCEEEEecCC
Confidence 2345667899999999865
No 355
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.45 E-value=0.88 Score=50.52 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=30.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..|+|||+|-.|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999997 699999874
No 356
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=86.43 E-value=0.99 Score=48.18 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=30.6
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
++ +.+++|+|+||+|..+++.|+..|+ ++.++|.
T Consensus 330 ~~-~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 330 LN-NQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred cC-CCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 45 7899999999999999999999998 8888764
No 357
>PRK07677 short chain dehydrogenase; Provisional
Probab=86.42 E-value=2.8 Score=39.93 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=27.5
Q ss_pred CeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 41 ARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 41 ~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.+++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 57889985 7799999999999998 78888765
No 358
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.39 E-value=0.96 Score=46.84 Aligned_cols=35 Identities=37% Similarity=0.428 Sum_probs=31.3
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
.|+ .++|.|||+|.+|..+++.|...|+ ++...|+
T Consensus 113 ~l~-gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp 147 (381)
T PRK00257 113 DLA-ERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP 147 (381)
T ss_pred CcC-cCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 477 8999999999999999999999998 6777775
No 359
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=86.36 E-value=2.3 Score=43.42 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=25.8
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEE
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVI 70 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lv 70 (447)
..||+|+| .|-+|.++++.|.....-+|+.+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~ 34 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTAL 34 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence 46999998 79999999999987665567776
No 360
>PRK06398 aldose dehydrogenase; Validated
Probab=86.34 E-value=2.7 Score=40.45 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=48.0
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHH-HHHHHHHHhhCCceEEEE
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA-EVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka-~~a~~~l~~~np~v~i~~ 114 (447)
|+ ..+|+|.| .||+|.++++.|+..|. ++.+++.+.-+.. +..+-.-|+..+.. +.+.+.+.+.+..+.+-.
T Consensus 4 l~-gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 4 LK-DKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 55 78999999 57999999999999996 7888886543221 22234557766543 344455555444455544
Q ss_pred Ee
Q 013224 115 HF 116 (447)
Q Consensus 115 ~~ 116 (447)
+.
T Consensus 78 ~~ 79 (258)
T PRK06398 78 NN 79 (258)
T ss_pred EC
Confidence 43
No 361
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.34 E-value=3.9 Score=41.60 Aligned_cols=76 Identities=22% Similarity=0.163 Sum_probs=48.9
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
++...+|+|+|+||+|.-.++....+| .+++.+| ++..|.+.|++.-. +.-|....
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~~lGA----d~~i~~~~ 219 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAKKLGA----DHVINSSD 219 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHHHhCC----cEEEEcCC
Confidence 433678999999999999999999999 6888876 44556665554322 22232211
Q ss_pred ccCccchhhccCCceEEEcccCC
Q 013224 117 CRIEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~~Dn 139 (447)
. +.....-+.+|+||++.-+
T Consensus 220 ~---~~~~~~~~~~d~ii~tv~~ 239 (339)
T COG1064 220 S---DALEAVKEIADAIIDTVGP 239 (339)
T ss_pred c---hhhHHhHhhCcEEEECCCh
Confidence 1 1111222239999999773
No 362
>PRK07774 short chain dehydrogenase; Provisional
Probab=86.31 E-value=1.3 Score=41.89 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=30.0
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++ +.+|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 4 ~~-~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 4 FD-DKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred cC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45 678999997 9999999999999996 68887754
No 363
>PRK07856 short chain dehydrogenase; Provisional
Probab=86.29 E-value=2.6 Score=40.16 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=46.0
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChH-HHHHHHHHHhhCCceEEEE
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK-AEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~K-a~~a~~~l~~~np~v~i~~ 114 (447)
+. +.+++|.| .||+|.++++.|+..|. ++.++|.+.-. ........+..-|+...- .+.+.+.+.+..+.+.+-.
T Consensus 4 ~~-~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 80 (252)
T PRK07856 4 LT-GRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE-TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLV 80 (252)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh-hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45 78899999 57999999999999997 78888875422 111112223345665432 2333344444444444444
Q ss_pred Ee
Q 013224 115 HF 116 (447)
Q Consensus 115 ~~ 116 (447)
+.
T Consensus 81 ~~ 82 (252)
T PRK07856 81 NN 82 (252)
T ss_pred EC
Confidence 43
No 364
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=86.26 E-value=1.8 Score=45.66 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=50.2
Q ss_pred HHHHhcCCeEEEEcC-chHHHHHHHHHHHh-------CC-CeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHH
Q 013224 34 RDDLQEYARILVVGA-GGLGCELLKDLALS-------GF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVM 104 (447)
Q Consensus 34 q~~L~~~~~VlvvG~-GglG~eiak~La~~-------Gv-g~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~ 104 (447)
.+..++-.||.|||+ |.+|+.+|-.|+.. |+ .+|.++| +-+.|++.-+--|+
T Consensus 94 ~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD-------------------~~~~~a~G~amDL~ 154 (444)
T PLN00112 94 TKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE-------------------RSKQALEGVAMELE 154 (444)
T ss_pred hhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc-------------------CCcchhHHHHHHHH
Confidence 333333579999999 99999999999988 44 2455554 22335555444444
Q ss_pred hhC-Cce-EEEEEeccCccchhhccCCceEEEcccCC
Q 013224 105 ERV-SGV-NIVPHFCRIEDKDISFYNDFNIIVLGLDS 139 (447)
Q Consensus 105 ~~n-p~v-~i~~~~~~i~~~~~~~~~~~DvVi~~~Dn 139 (447)
... |.. +|.... .+.+-++++|+||.+-..
T Consensus 155 daa~~~~~~v~i~~-----~~ye~~kdaDiVVitAG~ 186 (444)
T PLN00112 155 DSLYPLLREVSIGI-----DPYEVFQDAEWALLIGAK 186 (444)
T ss_pred HhhhhhcCceEEec-----CCHHHhCcCCEEEECCCC
Confidence 432 322 222221 234668899999887543
No 365
>PRK12827 short chain dehydrogenase; Provisional
Probab=86.23 E-value=3.9 Score=38.45 Aligned_cols=34 Identities=38% Similarity=0.695 Sum_probs=28.7
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
|. +.+++|.| .|+||.++++.|+..|. ++.+++.
T Consensus 4 ~~-~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~ 38 (249)
T PRK12827 4 LD-SRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDI 38 (249)
T ss_pred cC-CCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcC
Confidence 44 67899999 69999999999999997 5777773
No 366
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=86.21 E-value=2.2 Score=44.21 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEecc
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 118 (447)
..||+|+|+ |.+|.|+++.|...-..+|+.+-.+ ...|+. +...+|.+.-.. ...
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~saG~~--------i~~~~~~l~~~~-~~~ 93 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKAGQS--------FGSVFPHLITQD-LPN 93 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhcCCC--------chhhCccccCcc-ccc
Confidence 679999997 7899999999998855577775422 222322 111222211100 011
Q ss_pred CccchhhccCCceEEEcccCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 119 i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
+.+....-+++.|+|+.|+.+-.++.++..+. .+.++||.+.
T Consensus 94 ~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~~~---------------~g~~VIDlSs 135 (381)
T PLN02968 94 LVAVKDADFSDVDAVFCCLPHGTTQEIIKALP---------------KDLKIVDLSA 135 (381)
T ss_pred eecCCHHHhcCCCEEEEcCCHHHHHHHHHHHh---------------CCCEEEEcCc
Confidence 11222222478999999999988888877642 3567777653
No 367
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=86.17 E-value=0.76 Score=41.15 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=52.3
Q ss_pred eEEEEcCchHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCC-CCChHHHHHHHHH-HhhCCceEEEEEecc
Q 013224 42 RILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMED-VGKPKAEVAAKRV-MERVSGVNIVPHFCR 118 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~-~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~d-iG~~Ka~~a~~~l-~~~np~v~i~~~~~~ 118 (447)
||.|+|+|.+|..+++.+.. .++.-+.+.|. .++..+... +..+. -|+++..+..+.- ...| +..+.....+
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a~l--l~~Ds~hg~~~~~v~~~~~~l~i~-g~~i~~~~~~ 76 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLAHL--LKYDSVHGRFPGEVEVDEDGLIVN-GKKIKVLAER 76 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHHHH--hcccCCCCCCCCcEEEeCCEEEEC-CEEEEEEecC
Confidence 79999999999999999874 45544555553 455544433 33222 2665543211000 0000 1112211111
Q ss_pred Cccchhhc-cCCceEEEcccCCHHHHHHHHHH
Q 013224 119 IEDKDISF-YNDFNIIVLGLDSIEARSYINAV 149 (447)
Q Consensus 119 i~~~~~~~-~~~~DvVi~~~Dn~~~r~~in~~ 149 (447)
......+ -.+.|+||+|+.-+.++......
T Consensus 77 -~p~~~~w~~~gvDiVie~tG~f~~~~~~~~h 107 (149)
T smart00846 77 -DPANLPWKELGVDIVVECTGKFTTREKASAH 107 (149)
T ss_pred -ChHHCcccccCCeEEEeccccccchHHHHHH
Confidence 0111111 13679999999887776654433
No 368
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.13 E-value=1 Score=45.58 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=29.7
Q ss_pred CeEEEEcC-chHHHHHHHHHHHhCCCe------EEEEeCCc
Q 013224 41 ARILVVGA-GGLGCELLKDLALSGFKN------LEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~-GglG~eiak~La~~Gvg~------i~lvD~D~ 74 (447)
.||.|+|+ |.+|+.++..|+..|+-. |.|+|.+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence 38999999 999999999999988754 99999753
No 369
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=86.12 E-value=3.6 Score=39.48 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=27.0
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEE
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVI 70 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lv 70 (447)
|+ +.+|+|.|+ +|||.++++.|+..|. ++.++
T Consensus 6 l~-~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~ 38 (260)
T PRK08416 6 MK-GKTLVISGGTRGIGKAIVYEFAQSGV-NIAFT 38 (260)
T ss_pred cC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEE
Confidence 56 788999995 8999999999999997 46554
No 370
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=86.11 E-value=5.4 Score=44.31 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=27.7
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+|||.| .|-+|+++++.|...|=-+++.+|..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~ 349 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG 349 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence 77999999 59999999999998632378888754
No 371
>PRK07825 short chain dehydrogenase; Provisional
Probab=86.04 E-value=1.5 Score=42.37 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=28.8
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+++|.|+ ||+|.++++.|+..|. ++.+++.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~ 39 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDE 39 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCH
Confidence 678999995 8999999999999997 577777543
No 372
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=85.97 E-value=4.8 Score=40.72 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=30.0
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++ ..+|+|.|+ |=+|+++++.|...|. +++.+|..
T Consensus 13 ~~-~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 13 LA-PKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cc-CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45 689999995 9999999999999995 78888854
No 373
>PRK06185 hypothetical protein; Provisional
Probab=85.97 E-value=1 Score=46.46 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=31.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+..|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 6789999999999999999999998 799999763
No 374
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=85.87 E-value=0.94 Score=46.74 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=31.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
...|+|||+|..|+.+|..|++.|+ +++|+|...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 4679999999999999999999997 799999765
No 375
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=85.87 E-value=2.2 Score=42.24 Aligned_cols=30 Identities=43% Similarity=0.679 Sum_probs=25.9
Q ss_pred eEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
||||.|+ |-||+.+++.|...| +++.+|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence 7999996 999999999999888 57777753
No 376
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.86 E-value=0.94 Score=48.22 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=32.8
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+. ..+|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus 11 ~~~~-~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 11 PQEL-SGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred cccc-CCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 3456 7899999999999999999999998 89999964
No 377
>PRK05650 short chain dehydrogenase; Provisional
Probab=85.81 E-value=3.2 Score=40.08 Aligned_cols=31 Identities=32% Similarity=0.656 Sum_probs=26.0
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+|+|.| .||+|.++++.|+..|. ++.+++.+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~ 33 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVN 33 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 688998 58999999999999997 57776643
No 378
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=85.79 E-value=1.1 Score=45.83 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=31.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
...|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 4689999999999999999999997 7999997754
No 379
>PRK06841 short chain dehydrogenase; Provisional
Probab=85.77 E-value=1.2 Score=42.34 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=30.0
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 13 ~~-~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~ 48 (255)
T PRK06841 13 LS-GKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRS 48 (255)
T ss_pred CC-CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56 789999995 9999999999999997 67777653
No 380
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=85.75 E-value=0.96 Score=46.47 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
...|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGL-SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCC
Confidence 5789999999999999999999998 599999764
No 381
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=85.70 E-value=1.1 Score=45.15 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=29.4
Q ss_pred eEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q 013224 42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~-GglG~eiak~La~~Gv-g~i~lvD~D~ 74 (447)
||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999997 5799999654
No 382
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=85.67 E-value=13 Score=35.99 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=26.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+-+|||. |. ++..+++.|.++++-+|.|.
T Consensus 120 ~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~ 152 (250)
T PRK00517 120 GKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDP 152 (250)
T ss_pred CCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCH
Confidence 78999999998 74 55567888988899999764
No 383
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.65 E-value=1.3 Score=40.33 Aligned_cols=37 Identities=30% Similarity=0.480 Sum_probs=29.6
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
|. .++++|+|.|-+|.-+|+.|..+|. +++++|-|.+
T Consensus 21 l~-Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi 57 (162)
T PF00670_consen 21 LA-GKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI 57 (162)
T ss_dssp -T-TSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eC-CCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence 56 8899999999999999999999995 8999998774
No 384
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=85.61 E-value=4.3 Score=38.89 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=26.5
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+|+|.| .||+|.++++.|+..|. ++.+++.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~ 33 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRN 33 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 689999 58999999999999997 68887643
No 385
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=85.49 E-value=4.6 Score=40.25 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=28.3
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+++|.|+ +|||.++++.|+..|..++.+++.+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 578999996 6899999999999995578877654
No 386
>PRK07236 hypothetical protein; Provisional
Probab=85.45 E-value=1.1 Score=45.93 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 6799999999999999999999998 689998653
No 387
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=85.38 E-value=1.2 Score=48.47 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=32.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE 76 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve 76 (447)
...|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 4679999999999999999999997 89999976553
No 388
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=85.31 E-value=3.9 Score=45.41 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=30.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|||+|..|...|..|++.|. +++|+|..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~ 225 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDAN 225 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 5699999999999999999999997 79999865
No 389
>PRK12937 short chain dehydrogenase; Provisional
Probab=85.25 E-value=3.1 Score=39.12 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=26.1
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD 71 (447)
+.+|+|.| .|+||..+++.|+..|. ++.++.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~ 36 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF-AVAVNY 36 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEec
Confidence 68899999 59999999999999997 455543
No 390
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=85.22 E-value=1.1 Score=45.10 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=26.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVID 71 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD 71 (447)
+.+|.|||+|.+|..++++|..+|+ ++.+.+
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~ 33 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGL-NVIVGL 33 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEE
Confidence 7899999999999999999999997 454433
No 391
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=85.21 E-value=1.3 Score=45.37 Aligned_cols=57 Identities=25% Similarity=0.440 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEE--EEeCCc--cCcccCccccCCCC
Q 013224 31 TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLE--VIDMDR--IEVSNLNRQFLFRM 88 (447)
Q Consensus 31 ~~~q~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~--lvD~D~--Ve~sNL~RqfLf~~ 88 (447)
.+.|+--. +.+|.|||+||-||.++..|.+.|+..+. .+|.|. .+.+...+-.++.+
T Consensus 9 ~~~~~~~~-~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~ 69 (349)
T TIGR00065 9 RELIQPSN-KAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGK 69 (349)
T ss_pred hhhcCccc-CCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCC
Confidence 34444444 68999999999999999999999986554 477776 33444444455543
No 392
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=85.18 E-value=1.1 Score=46.12 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=37.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCcccc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQF 84 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~Rqf 84 (447)
..-|.|||+|-.||.+|..|++-| +++++|..|.-|+.-+---+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdG-RrVhVIERDl~EPdRivGEl 88 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDG-RRVHVIERDLSEPDRIVGEL 88 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCC-cEEEEEecccccchHHHHHh
Confidence 466999999999999999999999 79999999988776654443
No 393
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.17 E-value=5.8 Score=40.14 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=29.5
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 39 ~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
...+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3679999999999999999888899887888764
No 394
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=85.12 E-value=4.2 Score=42.97 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=68.1
Q ss_pred eEEEEcCchHHH-HHHHHHHH----hCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 42 RILVVGAGGLGC-ELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 42 ~VlvvG~GglG~-eiak~La~----~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
||.|||+|+.=+ ++++.|+. .++++|.++|-|. ..|.+ =...+.+.+++..+.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~Tt 66 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYTT 66 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEEC
Confidence 899999999633 67777764 3468999999554 22221 1233444455666677887764
Q ss_pred ccCccchhhccCCceEEEcc--cCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccccceE
Q 013224 117 CRIEDKDISFYNDFNIIVLG--LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHA 182 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~--~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~~G~v 182 (447)
. -.+-++++|.||+. ....++|..--++. .++|+ +-.-|.|..|..
T Consensus 67 d-----r~eAl~gADfVi~~irvGg~~~r~~De~Ip-------------~kyGi--~gqET~G~GG~~ 114 (437)
T cd05298 67 D-----PEEAFTDADFVFAQIRVGGYAMREQDEKIP-------------LKHGV--VGQETCGPGGFA 114 (437)
T ss_pred C-----HHHHhCCCCEEEEEeeeCCchHHHHHHhHH-------------HHcCc--ceecCccHHHHH
Confidence 3 24668899999998 55667776555555 36775 333566666643
No 395
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.08 E-value=1.2 Score=46.03 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=31.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCC
Confidence 5689999999999999999999998 799999765
No 396
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=85.04 E-value=1.2 Score=47.79 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=30.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
-.+|.|||+|..|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 4589999999999999999999997 788988553
No 397
>PLN02494 adenosylhomocysteinase
Probab=85.03 E-value=1.3 Score=46.91 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=32.5
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
+. ..+|+|+|+|.+|..+++.+...|. ++.++|.|..
T Consensus 252 La-GKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~ 288 (477)
T PLN02494 252 IA-GKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI 288 (477)
T ss_pred cC-CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 45 7899999999999999999999998 7888886643
No 398
>PLN02740 Alcohol dehydrogenase-like
Probab=84.98 E-value=5.5 Score=40.80 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=31.1
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++...+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 3336789999999999999999999998888888653
No 399
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=84.96 E-value=4.9 Score=39.65 Aligned_cols=56 Identities=29% Similarity=0.328 Sum_probs=37.0
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
||||+| -|-||..+++.|...|. ++..++.. .-|+. ..+.+.+.+.+..|++-|..
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~-~v~~~~r~--------------~~dl~--d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGY-EVIATSRS--------------DLDLT--DPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSE-EEEEESTT--------------CS-TT--SHHHHHHHHHHH--SEEEE-
T ss_pred EEEEECCCCHHHHHHHHHHhhCCC-EEEEeCch--------------hcCCC--CHHHHHHHHHHhCCCeEecc
Confidence 899999 59999999999998875 34444444 22332 35667778888888765554
No 400
>PRK08013 oxidoreductase; Provisional
Probab=84.94 E-value=1.2 Score=46.14 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+..|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCC
Confidence 5689999999999999999999998 799999765
No 401
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.92 E-value=1.4 Score=43.31 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=27.3
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFK-NLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg-~i~lvD~D 73 (447)
+|.|||+|.+|..++..|...|.. ++..+|.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 799999999999999999999973 57776643
No 402
>PRK07574 formate dehydrogenase; Provisional
Probab=84.90 E-value=1.2 Score=46.08 Aligned_cols=97 Identities=22% Similarity=0.205 Sum_probs=63.7
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
..|. ..+|.|||+|.+|.++|+.|...|+ ++..+|.... +.+.. ... .++.
T Consensus 188 ~~L~-gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~-------------------~~~~~----~~~----g~~~ 238 (385)
T PRK07574 188 YDLE-GMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRL-------------------PEEVE----QEL----GLTY 238 (385)
T ss_pred eecC-CCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCC-------------------chhhH----hhc----Ccee
Confidence 3588 8999999999999999999999998 6777774221 00000 011 1111
Q ss_pred EeccCccchhhccCCceEEEccc-CCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 115 HFCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 115 ~~~~i~~~~~~~~~~~DvVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
+ ....++++.+|+|+.++ .+.+++..+|+..... .+.+.-+|+.+-
T Consensus 239 ~-----~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~----------mk~ga~lIN~aR 285 (385)
T PRK07574 239 H-----VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSR----------MKRGSYLVNTAR 285 (385)
T ss_pred c-----CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhc----------CCCCcEEEECCC
Confidence 1 12356788999997764 5678888888765432 245666777763
No 403
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=84.89 E-value=20 Score=29.60 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=49.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
..+|+-+|||. |.-....+...+-.+++-+|.. ....+.+.+.+++..- -+++....+.
T Consensus 20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s-------------------~~~~~~a~~~~~~~~~-~~~~~~~~~~ 78 (124)
T TIGR02469 20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIERN-------------------PEALRLIERNARRFGV-SNIVIVEGDA 78 (124)
T ss_pred CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCC-------------------HHHHHHHHHHHHHhCC-CceEEEeccc
Confidence 56899999976 6665555544444788888833 2345555555555421 1344444443
Q ss_pred ccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 120 ~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
..........||+|+...........+..+.
T Consensus 79 ~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~ 109 (124)
T TIGR02469 79 PEALEDSLPEPDRVFIGGSGGLLQEILEAIW 109 (124)
T ss_pred cccChhhcCCCCEEEECCcchhHHHHHHHHH
Confidence 3212223358999988643222233444443
No 404
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=84.86 E-value=4 Score=41.23 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
+.+|||.| +|.+|+.+++.|+..|. ++.+++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 67999999 58899999999999996 5666554
No 405
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=84.86 E-value=2.4 Score=44.48 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=59.0
Q ss_pred eEEEEcCchHHH-HHHHHHHH----hCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 42 RILVVGAGGLGC-ELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 42 ~VlvvG~GglG~-eiak~La~----~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
||.|||+|+.-+ ++++.|+. .++++|.++|-|. ...|.. =...+.+.+++..+.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999866 67777776 5678999999774 332221 1234555566677777877654
Q ss_pred ccCccchhhccCCceEEEcc--cCCHHHHHHHHHHH
Q 013224 117 CRIEDKDISFYNDFNIIVLG--LDSIEARSYINAVA 150 (447)
Q Consensus 117 ~~i~~~~~~~~~~~DvVi~~--~Dn~~~r~~in~~~ 150 (447)
. -.+-++++|+||.+ ....+.|..-.++.
T Consensus 68 d-----~~~al~gadfVi~~~~vg~~~~r~~de~i~ 98 (419)
T cd05296 68 D-----RREALEGADFVFTQIRVGGLEARALDERIP 98 (419)
T ss_pred C-----HHHHhCCCCEEEEEEeeCCcchhhhhhhhH
Confidence 3 24567889999887 34445554333333
No 406
>PRK13984 putative oxidoreductase; Provisional
Probab=84.85 E-value=4 Score=44.77 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|..|...|..|.+.|+ +++|+|.+.
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 6789999999999999999999997 799998654
No 407
>PRK06114 short chain dehydrogenase; Provisional
Probab=84.81 E-value=3.6 Score=39.28 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=29.4
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +..++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 6 ~~-~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~ 41 (254)
T PRK06114 6 LD-GQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLR 41 (254)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 55 77899998 67999999999999997 77777753
No 408
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=84.80 E-value=2.5 Score=40.85 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=69.7
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE-E-eccC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP-H-FCRI 119 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~-~-~~~i 119 (447)
++.+||+|-.|..+.++|...|. .+...|.+.-....+..+ |-.-|..+.+.+.++.+--.|-. . ..++
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~gh-dvV~yD~n~~av~~~~~~--------ga~~a~sl~el~~~L~~pr~vWlMvPag~i 72 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGH-DVVGYDVNQTAVEELKDE--------GATGAASLDELVAKLSAPRIVWLMVPAGDI 72 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCC-eEEEEcCCHHHHHHHHhc--------CCccccCHHHHHHhcCCCcEEEEEccCCCc
Confidence 57899999999999999999995 677777554333333222 22223334566666654422221 1 2223
Q ss_pred ccc----hhhccCCceEEEcccCC-HHHHHHHHHHHHhhccccCCCcccccCCCcEEEeeeccc
Q 013224 120 EDK----DISFYNDFNIIVLGLDS-IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (447)
Q Consensus 120 ~~~----~~~~~~~~DvVi~~~Dn-~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~~g~ 178 (447)
.+. -..+++.=|+||++..+ ++-...-++.. .+.++.|+|+||.|-
T Consensus 73 t~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l-------------~~kgi~flD~GTSGG 123 (300)
T COG1023 73 TDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL-------------AEKGIHFLDVGTSGG 123 (300)
T ss_pred hHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH-------------HhcCCeEEeccCCCC
Confidence 332 24567888999999554 33222222222 267999999999874
No 409
>PRK07904 short chain dehydrogenase; Provisional
Probab=84.79 E-value=4.8 Score=38.68 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=27.6
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|.| .||+|.++++.|+..|--++.+++.+
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~ 42 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALP 42 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 56789988 68999999999999863478887654
No 410
>PRK06500 short chain dehydrogenase; Provisional
Probab=84.79 E-value=1.7 Score=41.15 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=29.9
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++ +.+|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 4 ~~-~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 4 LQ-GKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 45 679999995 9999999999999997 67777754
No 411
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.76 E-value=1 Score=50.54 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=29.6
Q ss_pred CeEEEEcCchHHHHHHHHHH-HhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La-~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|..|+.+|..++ .+|+ .++++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence 58999999999999999999 8897 899999653
No 412
>CHL00194 ycf39 Ycf39; Provisional
Probab=84.73 E-value=8.7 Score=38.21 Aligned_cols=31 Identities=26% Similarity=0.589 Sum_probs=26.5
Q ss_pred eEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+|+|.|+ |-+|.++++.|...|. +++.++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcC
Confidence 7999995 9999999999999996 67777643
No 413
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=84.73 E-value=1.4 Score=45.45 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHh--CCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALS--GFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~--Gvg~i~lvD~D~ 74 (447)
...|+|||+|-+|+.+|..|++. |. +++|+|...
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 36899999999999999999998 85 899999864
No 414
>PRK06270 homoserine dehydrogenase; Provisional
Probab=84.72 E-value=4.9 Score=40.94 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHh
Q 013224 40 YARILVVGAGGLGCELLKDLALS 62 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~ 62 (447)
.-+|.|+|+|.+|..+++.|...
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 35899999999999999999765
No 415
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=84.72 E-value=42 Score=34.54 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=29.5
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhC-CCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSG-FKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~G-vg~i~lvD~D 73 (447)
.-+|+|+| +|=||-+++..|.+.| ..+|.++|.-
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~ 39 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKT 39 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccC
Confidence 45789998 8999999999999999 7788888844
No 416
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=84.68 E-value=1.4 Score=41.72 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=29.2
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
|+ +.+|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 3 ~~-~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LE-GKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 45 789999996 8999999999999997 6777764
No 417
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=84.68 E-value=4.8 Score=42.46 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=30.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|||+|..|.+.|..|++.|. +++|+|..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~ 172 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 5789999999999999999999996 79999864
No 418
>PRK08703 short chain dehydrogenase; Provisional
Probab=84.61 E-value=2.3 Score=40.19 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=30.4
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
|+ ..+|+|.| .||+|.++++.|+..|. ++.+++.+.
T Consensus 4 l~-~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~ 40 (239)
T PRK08703 4 LS-DKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQ 40 (239)
T ss_pred CC-CCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCh
Confidence 45 68999999 48999999999999997 688887553
No 419
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=84.60 E-value=5.3 Score=42.43 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=30.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|||+|..|...|..|++.|. +++|+|..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 5799999999999999999999997 69999864
No 420
>PRK06753 hypothetical protein; Provisional
Probab=84.57 E-value=1.4 Score=44.84 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=29.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|+|||+|..|+.+|..|++.|+ +++|++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 379999999999999999999998 589988554
No 421
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.51 E-value=1.4 Score=44.44 Aligned_cols=32 Identities=34% Similarity=0.559 Sum_probs=29.3
Q ss_pred eEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeCC
Q 013224 42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG~-GglG~eiak~La~~Gv-g~i~lvD~D 73 (447)
||.|||+ |.+|+.+|..|+..|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 8999999 9999999999999997 679999965
No 422
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.47 E-value=3.8 Score=39.40 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.2
Q ss_pred HhcCCeEEEEcC---chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA---GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~---GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++ +.+++|.|+ +|||.++++.|+..|. ++.++|.+
T Consensus 5 ~~-~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~ 42 (256)
T PRK07889 5 LE-GKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFG 42 (256)
T ss_pred cc-CCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCc
Confidence 56 789999996 7999999999999997 68888754
No 423
>PRK06184 hypothetical protein; Provisional
Probab=84.45 E-value=1.2 Score=47.70 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=30.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
...|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~ 35 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKA 35 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 5789999999999999999999999 69999864
No 424
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.43 E-value=1.4 Score=45.99 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=32.1
Q ss_pred HhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+. ..+|+|+|+|.+|..+++.+...|. ++.++|.|.
T Consensus 193 l~-Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IA-GKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CC-cCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 45 8899999999999999999999998 688898665
No 425
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=84.41 E-value=1.5 Score=46.60 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.|. ..+|+|+|+|.+|..+|+.|...|. +++++|.|.
T Consensus 251 ~La-GKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIA-GKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcC-CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 367 8999999999999999999999998 688887664
No 426
>PRK07035 short chain dehydrogenase; Provisional
Probab=84.36 E-value=1.8 Score=41.17 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=30.5
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|. +.+|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 6 l~-~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 6 LT-GKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred cC-CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 55 78899999 78999999999999997 78888864
No 427
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.29 E-value=1.3 Score=44.56 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=61.7
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
.|. .++|.|||+|.+|.++|+.|...|. ++..+|... ..... .
T Consensus 145 ~l~-gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~------------~~~~~-------------------~---- 187 (317)
T PRK06487 145 ELE-GKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG------------RPARP-------------------D---- 187 (317)
T ss_pred ccC-CCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------------Ccccc-------------------c----
Confidence 588 9999999999999999999988887 566666420 00000 0
Q ss_pred eccCccchhhccCCceEEEccc-CCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 116 FCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 116 ~~~i~~~~~~~~~~~DvVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
. ..-+++++++|+|+.++ -+.+++..+|+...... +.+--+|+.+
T Consensus 188 --~--~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~m----------k~ga~lIN~a 233 (317)
T PRK06487 188 --R--LPLDELLPQVDALTLHCPLTEHTRHLIGARELALM----------KPGALLINTA 233 (317)
T ss_pred --c--cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcC----------CCCeEEEECC
Confidence 0 01356788999997774 46789999998886432 4456677775
No 428
>PLN02858 fructose-bisphosphate aldolase
Probab=84.27 E-value=4.1 Score=49.09 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=72.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 119 (447)
..+|.+||+|-+|..+++||+..|+ .+++.|.+.=....+. +.|-..+...++..+. .++-+...+..-
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~--------~~Ga~~~~s~~e~a~~--advVi~~l~~~~ 72 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGF-KVQAFEISTPLMEKFC--------ELGGHRCDSPAEAAKD--AAALVVVLSHPD 72 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHH--------HcCCeecCCHHHHHhc--CCEEEEEcCChH
Confidence 5789999999999999999999996 6888875421111111 1122223333333322 233344333221
Q ss_pred --cc--c-hh---hccCCceEEEcc-cCCHHHHHHHHHHHHhhccccCCCcccccCC--CcEEEeeeccc-----cceEE
Q 013224 120 --ED--K-DI---SFYNDFNIIVLG-LDSIEARSYINAVACSFLEYETDDKPREETI--KPMVDGGTEGF-----KGHAR 183 (447)
Q Consensus 120 --~~--~-~~---~~~~~~DvVi~~-~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~--~pli~~g~~g~-----~G~v~ 183 (447)
.+ + .. .-+..=.+||++ +-+++.-+.+.+.+. ..+ +.|+++-+.|. .|.+.
T Consensus 73 ~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~-------------~~g~~~~~lDaPVsGg~~~A~~G~L~ 139 (1378)
T PLN02858 73 QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLT-------------ERKEQIFLVDAYVSKGMSDLLNGKLM 139 (1378)
T ss_pred HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHH-------------hcCCceEEEEccCcCCHHHHhcCCeE
Confidence 11 0 01 112333577776 456666667777763 567 88999988875 57776
Q ss_pred EEeCC
Q 013224 184 VIIPG 188 (447)
Q Consensus 184 ~~~p~ 188 (447)
++..+
T Consensus 140 imvGG 144 (1378)
T PLN02858 140 IIASG 144 (1378)
T ss_pred EEEcC
Confidence 66654
No 429
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=84.26 E-value=4.8 Score=46.76 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=30.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|..|...|..|++.|. +++|+|...
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 6799999999999999999999997 799998653
No 430
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=84.16 E-value=1.2 Score=45.98 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=30.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
...|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDL-RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 5689999999999999999999998 68999974
No 431
>PRK08226 short chain dehydrogenase; Provisional
Probab=84.14 E-value=3.1 Score=39.85 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=30.3
Q ss_pred HHhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 36 ~L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
++. +.+++|.| .||+|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~-~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~ 39 (263)
T PRK08226 3 KLT-GKTALITGALQGIGEGIARVFARHGA-NLILLDIS 39 (263)
T ss_pred CCC-CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 355 78999998 78999999999999997 58888754
No 432
>PRK08643 acetoin reductase; Validated
Probab=84.09 E-value=3 Score=39.75 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=27.7
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~ 35 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYN 35 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45788888 78999999999999997 78888754
No 433
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=84.03 E-value=1.5 Score=42.43 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=30.1
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
.|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999998 7999997753
No 434
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.00 E-value=1.4 Score=44.59 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=29.4
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEeC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGF-K-----NLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gv-g-----~i~lvD~ 72 (447)
-.||.|+|+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 359999999 9999999999999887 5 6999985
No 435
>PRK06847 hypothetical protein; Provisional
Probab=83.96 E-value=1.5 Score=44.49 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=30.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 4689999999999999999999998 689998653
No 436
>PLN00016 RNA-binding protein; Provisional
Probab=83.94 E-value=5 Score=41.12 Aligned_cols=38 Identities=21% Similarity=0.438 Sum_probs=31.0
Q ss_pred HHHhcCCeEEEE----cC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 35 DDLQEYARILVV----GA-GGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 35 ~~L~~~~~Vlvv----G~-GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.... ..+|+|+ |+ |-+|..+++.|...|. ++++++.+.
T Consensus 48 ~~~~-~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~ 90 (378)
T PLN00016 48 AAVE-KKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGK 90 (378)
T ss_pred cccc-cceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCC
Confidence 3445 6789999 75 8899999999999995 788888653
No 437
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=83.90 E-value=1.5 Score=47.08 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=29.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|-+|+.+|.+|+.+|+ .+++.|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999998 899998643
No 438
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=83.89 E-value=1.5 Score=47.22 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=29.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|.|||+|..|+.+|.+|+.+|+ .++++|.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 489999999999999999999997 788998553
No 439
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.88 E-value=8.1 Score=38.51 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|.|+|++|..++..+...|..++.++|.+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~ 197 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS 197 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6799999999999999999999999778877643
No 440
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=83.84 E-value=7 Score=41.19 Aligned_cols=33 Identities=39% Similarity=0.436 Sum_probs=28.6
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..||+|.| .|-+|+++++.|...|. ++..+|..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 47899999 58999999999999996 78888854
No 441
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.83 E-value=2.5 Score=41.64 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=40.6
Q ss_pred hhHHhhccCCCCCCCCccCCHHHHHHHhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 11 DLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 11 ~~~~~l~~~~~~~r~~~~~G~~~q~~L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
++..++.+-.+|.-+.+ ..-..++ +.+|+|.| .|+||.++++.|+..|. ++.+++.
T Consensus 22 ~~~~~~~~~~~~~~~~~----~~~~~~~-~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r 78 (290)
T PRK06701 22 GIESLMNPLPQFEAPNY----KGSGKLK-GKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYL 78 (290)
T ss_pred ChhhhCCcccCCCcccc----ccccCCC-CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 55666666555554332 2235677 78999999 58899999999999996 6777754
No 442
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=83.83 E-value=3 Score=42.89 Aligned_cols=66 Identities=29% Similarity=0.388 Sum_probs=42.9
Q ss_pred EEEEcCchHHHHHHHHH--HHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 43 ILVVGAGGLGCELLKDL--ALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 43 VlvvG~GglG~eiak~L--a~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
|+|||+|..|..+|..| +..|. ++.|||...--.-.-++-..|-..+++. ..+.+...-+...|..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~-----~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGP-----LDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccc-----hHHHHheecCceEEEe
Confidence 79999999999999999 77775 8999997654322223333455555555 3344444444555544
No 443
>PLN02650 dihydroflavonol-4-reductase
Probab=83.77 E-value=4.7 Score=40.66 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.8
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+.+|||.|+ |.+|+.+++.|+..|. ++.+++.+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r~ 38 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-TVRATVRD 38 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 678999995 9999999999999996 67766644
No 444
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=83.75 E-value=1.6 Score=41.85 Aligned_cols=37 Identities=32% Similarity=0.404 Sum_probs=32.8
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.|+ ..+|+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 28 ~l~-~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 28 GLA-GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred Ccc-CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 477 8999999999999999999999998766688864
No 445
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.74 E-value=5.7 Score=37.66 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=27.7
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
++ ..+++|.| .+|+|-++++.|+..|. ++.+++.
T Consensus 3 ~~-~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r 37 (227)
T PRK08862 3 IK-SSIILITSAGSVLGRTISCHFARLGA-TLILCDQ 37 (227)
T ss_pred CC-CeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcC
Confidence 44 67899999 56799999999999997 5776653
No 446
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=83.69 E-value=3.1 Score=41.44 Aligned_cols=31 Identities=29% Similarity=0.630 Sum_probs=29.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVID 71 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD 71 (447)
..+|-.||+|-.|+.+++||..+|. ++++.|
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~-kVtV~d 65 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGY-KVTVYD 65 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCC-EEEEEe
Confidence 6899999999999999999999997 899988
No 447
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=83.67 E-value=2.1 Score=41.17 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=30.3
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
++ +.+++|.|+ ||+|.++++.|+..|. ++.++|.+.
T Consensus 4 ~~-~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~ 40 (263)
T PRK06200 4 LH-GQVALITGGGSGIGRALVERFLAEGA-RVAVLERSA 40 (263)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 45 789999995 7899999999999997 688888653
No 448
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=83.65 E-value=4.5 Score=38.72 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=37.8
Q ss_pred eEEEEc-CchHHHHHHHHHHH----hCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEe
Q 013224 42 RILVVG-AGGLGCELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~----~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 116 (447)
.|+|.| .||||.++++.|+. .|. ++.+++.+ ..+.+.+++.++...|..++..+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~v~~~~ 61 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARN-------------------DEALRQLKAEIGAERSGLRVVRVS 61 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcC-------------------HHHHHHHHHHHHhcCCCceEEEEE
Confidence 578888 67999999999997 575 67777643 124555556665544555555554
Q ss_pred ccC
Q 013224 117 CRI 119 (447)
Q Consensus 117 ~~i 119 (447)
.++
T Consensus 62 ~Dl 64 (256)
T TIGR01500 62 LDL 64 (256)
T ss_pred ecc
Confidence 444
No 449
>PLN02985 squalene monooxygenase
Probab=83.65 E-value=1.6 Score=47.03 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=31.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
...|+|||+|..|+.+|..|++.|. +++|+|.+.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGR-RVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence 6789999999999999999999996 799999874
No 450
>PRK12744 short chain dehydrogenase; Provisional
Probab=83.58 E-value=4.5 Score=38.60 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=26.3
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEE
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEV 69 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~l 69 (447)
|+ +.+|+|.| .||+|.++++.|+..|...+.+
T Consensus 6 l~-~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 6 LK-GKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CC-CcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 45 67899999 7899999999999999853433
No 451
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=83.58 E-value=1.4 Score=45.18 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=30.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
...|+|||+|..|+.+|..|++.|+ +++|+|...
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGF-SVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 4689999999999999999999997 799999764
No 452
>PRK08163 salicylate hydroxylase; Provisional
Probab=83.57 E-value=1.5 Score=44.85 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCc
Confidence 5689999999999999999999998 799998764
No 453
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=83.57 E-value=6.9 Score=45.57 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|.-|-..|..|++.|. +++|+|...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 4689999999999999999999997 799999653
No 454
>PRK08244 hypothetical protein; Provisional
Probab=83.56 E-value=1.4 Score=46.89 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=29.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+..|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~ 34 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV-KTCVIERL 34 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 4689999999999999999999998 78999854
No 455
>PRK05442 malate dehydrogenase; Provisional
Probab=83.54 E-value=1.6 Score=44.27 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=29.4
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEeC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGF-K-----NLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gv-g-----~i~lvD~ 72 (447)
-.||.|||+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 469999998 9999999999999887 5 6999985
No 456
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=83.53 E-value=1.4 Score=44.96 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=30.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHh---CCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALS---GFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~---Gvg~i~lvD~D 73 (447)
..+|+|||+|..|..+|..|++. |+ +++|+|..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~-~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGL-PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCC-EEEEEeCC
Confidence 57899999999999999999998 98 79999985
No 457
>PLN02366 spermidine synthase
Probab=83.52 E-value=3.7 Score=41.25 Aligned_cols=33 Identities=30% Similarity=0.711 Sum_probs=24.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHH-hCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~-~Gvg~i~lvD~D~ 74 (447)
..+||+||+|+ |. ++..+++ .++.++++||-|.
T Consensus 92 pkrVLiIGgG~-G~-~~rellk~~~v~~V~~VEiD~ 125 (308)
T PLN02366 92 PKKVLVVGGGD-GG-VLREIARHSSVEQIDICEIDK 125 (308)
T ss_pred CCeEEEEcCCc-cH-HHHHHHhCCCCCeEEEEECCH
Confidence 57899999986 33 3455555 4688999999765
No 458
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=83.46 E-value=1.9 Score=46.29 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=32.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE 76 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve 76 (447)
...|+|||.|..|+.+|..|++.|. ++.|+|..-+.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d~~ 41 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGL-SVLLCEQDDLA 41 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCC
Confidence 5679999999999999999999998 69999986553
No 459
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=83.46 E-value=1.5 Score=45.12 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
.|+|||+|..|+..|..|++.|+ ++.|+|..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGI-ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 59999999999999999999997 68999875
No 460
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=83.45 E-value=2.8 Score=39.92 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=26.8
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+|+|.| .||+|.++++.|+..|. ++.+++.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~ 33 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRR 33 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 689999 58999999999999997 68888754
No 461
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=83.43 E-value=1.4 Score=45.31 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 4689999999999999999999997 899999653
No 462
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=83.43 E-value=7 Score=39.73 Aligned_cols=93 Identities=15% Similarity=0.249 Sum_probs=60.3
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHH-HHHHHHHhhCCceEEEE
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE-VAAKRVMERVSGVNIVP 114 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~-~a~~~l~~~np~v~i~~ 114 (447)
+.+....|.|+|+||+|-....-+..+|.++|.-||... +.-.+.++| ...|.=.+|-. -+.+.++++.+
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~-~Kl~~A~~f--GAT~~vn~~~~~~vv~~i~~~T~------ 252 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP-EKLELAKKF--GATHFVNPKEVDDVVEAIVELTD------ 252 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH-HHHHHHHhc--CCceeecchhhhhHHHHHHHhcC------
Confidence 344478899999999999999999999999999998543 222344443 22222222211 13333333322
Q ss_pred EeccCccchhhccCCceEEEcccCCHHHHHHHHHHH
Q 013224 115 HFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (447)
Q Consensus 115 ~~~~i~~~~~~~~~~~DvVi~~~Dn~~~r~~in~~~ 150 (447)
.+.|.+|+|+.|.++.+.--++|
T Consensus 253 -------------gG~d~~~e~~G~~~~~~~al~~~ 275 (366)
T COG1062 253 -------------GGADYAFECVGNVEVMRQALEAT 275 (366)
T ss_pred -------------CCCCEEEEccCCHHHHHHHHHHH
Confidence 16899999999988665555555
No 463
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.40 E-value=3.8 Score=39.41 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=28.2
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
+. +.+++|.| .|++|.++++.|+..|. ++.+++.
T Consensus 8 ~~-~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~ 42 (265)
T PRK07097 8 LK-GKIALITGASYGIGFAIAKAYAKAGA-TIVFNDI 42 (265)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 55 77899999 47999999999999997 4767653
No 464
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=83.38 E-value=1.4 Score=44.60 Aligned_cols=31 Identities=35% Similarity=0.605 Sum_probs=28.2
Q ss_pred eEEEEcC-chHHHHHHHHHHHhCCC------eEEEEeC
Q 013224 42 RILVVGA-GGLGCELLKDLALSGFK------NLEVIDM 72 (447)
Q Consensus 42 ~VlvvG~-GglG~eiak~La~~Gvg------~i~lvD~ 72 (447)
||.|+|+ |.+|+.++..|+..|+- .|.|+|-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 6999999 99999999999998885 5999996
No 465
>PRK07060 short chain dehydrogenase; Provisional
Probab=83.33 E-value=1.9 Score=40.68 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=30.3
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+++|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 7 ~~-~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~ 42 (245)
T PRK07060 7 FS-GKSVLVTGASSGIGRACAVALAQRGA-RVVAAARN 42 (245)
T ss_pred cC-CCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 55 789999997 8999999999999997 68888753
No 466
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=83.27 E-value=1.1 Score=45.03 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=34.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCe--EEEEeCCccCcccC--ccccCCCC
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKN--LEVIDMDRIEVSNL--NRQFLFRM 88 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~--i~lvD~D~Ve~sNL--~RqfLf~~ 88 (447)
.+|.|||.||-||.++..|.+.|+.. +..+|.|.-.++.+ .+-.++.+
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~~~k~~ig~ 52 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGK 52 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEEcCC
Confidence 37999999999999999999999864 45567776443333 33344443
No 467
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.24 E-value=6.5 Score=39.03 Aligned_cols=84 Identities=21% Similarity=0.267 Sum_probs=54.6
Q ss_pred HHHHHHHhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCc
Q 013224 31 TELRDDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG 109 (447)
Q Consensus 31 ~~~q~~L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~ 109 (447)
....+++. ++.|+|=|| .|||-++|+.|+..|..-+.++= + ..+-+..++.+++.-|.
T Consensus 4 ~~~~e~~~-~kvVvITGASsGIG~~lA~~la~~G~~l~lvar---------------~-----~rrl~~v~~~l~~~~~~ 62 (282)
T KOG1205|consen 4 NLFMERLA-GKVVLITGASSGIGEALAYELAKRGAKLVLVAR---------------R-----ARRLERVAEELRKLGSL 62 (282)
T ss_pred cccHHHhC-CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh---------------h-----hhhHHHHHHHHHHhCCc
Confidence 45567888 999999995 79999999999999986554431 0 11334455555555443
Q ss_pred eEEEEEeccCccch--h-------hccCCceEEEc
Q 013224 110 VNIVPHFCRIEDKD--I-------SFYNDFNIIVL 135 (447)
Q Consensus 110 v~i~~~~~~i~~~~--~-------~~~~~~DvVi~ 135 (447)
-++.+...++.+.. . ..|.+.|+.|+
T Consensus 63 ~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVN 97 (282)
T KOG1205|consen 63 EKVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVN 97 (282)
T ss_pred CccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEe
Confidence 36777777776422 1 23455666665
No 468
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.22 E-value=7.7 Score=39.50 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=28.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
..+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 578999999999999988888899987888763
No 469
>PRK06914 short chain dehydrogenase; Provisional
Probab=83.22 E-value=3.6 Score=39.78 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+.+++|.| .|++|..+++.|+..|. ++.+++.+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~ 37 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNP 37 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCH
Confidence 56789988 58999999999999996 677777653
No 470
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=83.21 E-value=4.6 Score=45.04 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=28.4
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~ 447 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLN 447 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 578999995 8999999999999997 78888753
No 471
>PRK01581 speE spermidine synthase; Validated
Probab=83.19 E-value=3.2 Score=42.68 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=25.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+||++|+| .|..+...|...++.+|++||-|.
T Consensus 151 PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDp 184 (374)
T PRK01581 151 PKRVLILGGG-DGLALREVLKYETVLHVDLVDLDG 184 (374)
T ss_pred CCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCH
Confidence 6799999976 455555555445789999999775
No 472
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=83.18 E-value=1.4 Score=44.81 Aligned_cols=32 Identities=25% Similarity=0.529 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHHHhC-CCeEEEEeCCc
Q 013224 42 RILVVGAGGLGCELLKDLALSG-FKNLEVIDMDR 74 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~G-vg~i~lvD~D~ 74 (447)
.|+|||+|..|+.+|..|++.| + +++|+|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~-~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI-KIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc-eEEEEeCCC
Confidence 3899999999999999999999 8 789998764
No 473
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=83.13 E-value=7.2 Score=39.94 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=28.7
Q ss_pred CCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 40 ~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
+.+|+|.|+ |-+|+++++.|...|. +++.+|.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 689999997 9999999999999995 7888885
No 474
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=83.08 E-value=1.9 Score=45.60 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=34.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHh--CCCeEEEEeCCccCcccCccc
Q 013224 40 YARILVVGAGGLGCELLKDLALS--GFKNLEVIDMDRIEVSNLNRQ 83 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~--Gvg~i~lvD~D~Ve~sNL~Rq 83 (447)
++.|+|||+|-+|+.+|..|++. | .+++|+|.+.+-...-.|+
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G-~~V~vlE~~~~g~GaSgrn 68 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPA-LDVLVLEADLCGAGASGRN 68 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCC-CeEEEEeCCcccccccccc
Confidence 46899999999999999999998 6 4899999988753333333
No 475
>PRK05868 hypothetical protein; Validated
Probab=83.03 E-value=1.6 Score=44.68 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=29.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 41 ~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
.+|+|||+|-.|+.+|..|++.|+ +++|+|...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Confidence 379999999999999999999998 599999653
No 476
>PLN03139 formate dehydrogenase; Provisional
Probab=83.02 E-value=1.5 Score=45.45 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=62.8
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
..|. .++|.|||+|.+|..+|+.|...|+ ++..+|..... .+.. .+. .+..
T Consensus 195 ~~L~-gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~-------------------~~~~----~~~----g~~~ 245 (386)
T PLN03139 195 YDLE-GKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMD-------------------PELE----KET----GAKF 245 (386)
T ss_pred cCCC-CCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcc-------------------hhhH----hhc----Ccee
Confidence 3588 9999999999999999999999997 57777743210 0000 011 1111
Q ss_pred EeccCccchhhccCCceEEEcc-cCCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEeee
Q 013224 115 HFCRIEDKDISFYNDFNIIVLG-LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (447)
Q Consensus 115 ~~~~i~~~~~~~~~~~DvVi~~-~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g~ 175 (447)
+ +.-.++++++|+|+.+ -.+.+++..+|+...... +.+.-+|+.+-
T Consensus 246 ~-----~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m----------k~ga~lIN~aR 292 (386)
T PLN03139 246 E-----EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKM----------KKGVLIVNNAR 292 (386)
T ss_pred c-----CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhC----------CCCeEEEECCC
Confidence 1 1234677889998766 456788888887654322 44566777753
No 477
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.01 E-value=3 Score=41.69 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=29.9
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD 71 (447)
+. .++|+||| .|-+|..+|.+|...|. .+++.+
T Consensus 156 ~~-Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~ 189 (296)
T PRK14188 156 LS-GLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAH 189 (296)
T ss_pred CC-CCEEEEEcCCcchHHHHHHHHHhCCC-EEEEEC
Confidence 67 89999999 99999999999999996 788875
No 478
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.01 E-value=3.8 Score=38.72 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFK 65 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg 65 (447)
..+|+|.| .|++|.++++.|+..|..
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~~ 30 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGYD 30 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 57899999 589999999999999964
No 479
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=82.97 E-value=2.6 Score=40.48 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=29.6
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|+ +.+++|.|+ ||||.++++.|+..|. ++.++|..
T Consensus 3 ~~-~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 38 (262)
T TIGR03325 3 LK-GEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKS 38 (262)
T ss_pred cC-CcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45 789999995 7899999999999997 68888754
No 480
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=82.96 E-value=1.7 Score=43.97 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=60.9
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEE
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 115 (447)
.|. ..+|.|||+|.||..+++-|...|+ ++...|.-. ..+... ...+.
T Consensus 139 el~-gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~~~-------------~~~~~~---------------~~~~~-- 186 (324)
T COG0111 139 ELA-GKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDPYS-------------PRERAG---------------VDGVV-- 186 (324)
T ss_pred ccc-CCEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCC-------------chhhhc---------------cccce--
Confidence 578 8999999999999999999999998 677777411 111000 00000
Q ss_pred eccCccchhhccCCceEEEccc-CCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 116 FCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 116 ~~~i~~~~~~~~~~~DvVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
-.+.-+++++++|+|+..+ -+.++|-.||+.-.... +.+.-||+++
T Consensus 187 ---~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~M----------K~gailIN~a 233 (324)
T COG0111 187 ---GVDSLDELLAEADILTLHLPLTPETRGLINAEELAKM----------KPGAILINAA 233 (324)
T ss_pred ---ecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhC----------CCCeEEEECC
Confidence 0012356778888887764 35678888887765322 3455677775
No 481
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.94 E-value=1.7 Score=44.03 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=28.9
Q ss_pred CeEEEEcC-chHHHHHHHHHHHhCCC------eEEEEeC
Q 013224 41 ARILVVGA-GGLGCELLKDLALSGFK------NLEVIDM 72 (447)
Q Consensus 41 ~~VlvvG~-GglG~eiak~La~~Gvg------~i~lvD~ 72 (447)
.||+|+|+ |.+|+.++..|+..|+- +|.++|.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~ 41 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDI 41 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEc
Confidence 58999999 99999999999998864 7999996
No 482
>PRK08324 short chain dehydrogenase; Validated
Probab=82.92 E-value=3.9 Score=45.63 Aligned_cols=33 Identities=39% Similarity=0.510 Sum_probs=29.1
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~ 455 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD 455 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence 57899999 59999999999999997 78888754
No 483
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=82.85 E-value=1.7 Score=43.68 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEE
Q 013224 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (447)
Q Consensus 35 ~~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 114 (447)
..|. .++|.|||+|.+|.++|+.+...|. +|..+|.-.. . .+.| +.
T Consensus 141 ~~L~-gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~-------~-----~~~~-----------------~~--- 186 (311)
T PRK08410 141 GEIK-GKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGK-------N-----KNEE-----------------YE--- 186 (311)
T ss_pred cccC-CCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCcc-------c-----cccC-----------------ce---
Confidence 4688 9999999999999999999987776 6777775210 0 0000 00
Q ss_pred EeccCccchhhccCCceEEEccc-CCHHHHHHHHHHHHhhccccCCCcccccCCCcEEEee
Q 013224 115 HFCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (447)
Q Consensus 115 ~~~~i~~~~~~~~~~~DvVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~~pli~~g 174 (447)
+ ..-+++++++|+|+.++ -+.+++..+|+...... +.+.-||+.+
T Consensus 187 ~-----~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~M----------k~~a~lIN~a 232 (311)
T PRK08410 187 R-----VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLL----------KDGAILINVG 232 (311)
T ss_pred e-----ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhC----------CCCeEEEECC
Confidence 0 01346778889887764 36688888888876432 4456677765
No 484
>PRK06179 short chain dehydrogenase; Provisional
Probab=82.85 E-value=5.2 Score=38.46 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+.+|+|.| .||+|.++++.|+..|. ++.+++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 56799999 58999999999999996 588888764
No 485
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=82.84 E-value=1.6 Score=44.94 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
...|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL-DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Confidence 4689999999999999999999995 89999986
No 486
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=82.83 E-value=1.4 Score=40.40 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=29.0
Q ss_pred HHhcCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q 013224 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVID 71 (447)
Q Consensus 36 ~L~~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD 71 (447)
.++ +.+|+|||.|-.|.+++.+|+..| .+++++=
T Consensus 164 ~~~-~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~ 197 (203)
T PF13738_consen 164 DFK-GKRVVVVGGGNSAVDIAYALAKAG-KSVTLVT 197 (203)
T ss_dssp GCT-TSEEEEE--SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred hcC-CCcEEEEcChHHHHHHHHHHHhhC-CEEEEEe
Confidence 577 899999999999999999999999 8898873
No 487
>PRK08278 short chain dehydrogenase; Provisional
Probab=82.83 E-value=5.8 Score=38.46 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=30.0
Q ss_pred HhcCCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 37 L~~~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+. +.+++|.| .||+|.++++.|+..|. ++.+++..
T Consensus 4 ~~-~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LS-GKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 44 67899999 59999999999999997 78888765
No 488
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=82.83 E-value=2.4 Score=32.47 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.9
Q ss_pred EEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 45 VVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 45 vvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
|||+|--|...|..|.+.|. +++|+|..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~ 28 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKN 28 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 79999999999999999998 99999844
No 489
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=82.81 E-value=1.6 Score=44.25 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 013224 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (447)
Q Consensus 42 ~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~V 75 (447)
.|+|||+|..|+.+|..|++.|+ +++|+|...-
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL-KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence 38999999999999999999998 7999987764
No 490
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=82.71 E-value=1.6 Score=48.27 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=32.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEV 77 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~Ve~ 77 (447)
...|+|||.|..|+.+|..|++.|. ++.|||.+-+.-
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d~a~ 107 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGL-RVGLVEREDFSS 107 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccCC
Confidence 3679999999999999999999998 699999876543
No 491
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=82.68 E-value=4.7 Score=38.13 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=30.6
Q ss_pred HhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 37 L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+. +.+++|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 6 ~~-~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~ 42 (252)
T PRK08220 6 FS-GKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF 42 (252)
T ss_pred CC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence 55 788999996 7899999999999996 788888765
No 492
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=82.59 E-value=4.9 Score=38.09 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=26.5
Q ss_pred eEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 42 ~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
+++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~ 33 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-AVAVADLN 33 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 688999 58999999999999997 67777643
No 493
>PRK07045 putative monooxygenase; Reviewed
Probab=82.59 E-value=1.7 Score=44.48 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=30.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~ 38 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGH-SVTVVERAA 38 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCC
Confidence 4589999999999999999999999 689998665
No 494
>PRK09135 pteridine reductase; Provisional
Probab=82.52 E-value=9.5 Score=35.77 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=27.8
Q ss_pred CCeEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG-~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|.| .|++|..+++.|+..|. ++.+++..
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~ 39 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY-RVAIHYHR 39 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence 57899999 59999999999999997 67777643
No 495
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=82.50 E-value=7 Score=45.72 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=30.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D 73 (447)
..+|+|||+|..|...|..|++.|. +++|+|..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~ 462 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGV-DVTVYEAL 462 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecC
Confidence 5799999999999999999999997 79999865
No 496
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=82.44 E-value=1.8 Score=44.47 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=30.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 40 ~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCC
Confidence 4689999999999999999999998 589998765
No 497
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=82.37 E-value=1.9 Score=41.20 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=29.8
Q ss_pred HHhcCCeEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q 013224 36 DLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (447)
Q Consensus 36 ~L~~~~~VlvvG~-GglG~eiak~La~~Gvg~i~lvD~ 72 (447)
+++ ..+++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 5 ~~~-~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r 40 (260)
T PRK12823 5 RFA-GKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDR 40 (260)
T ss_pred ccC-CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 466 788999995 8899999999999996 6778774
No 498
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=82.36 E-value=3 Score=41.24 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=25.7
Q ss_pred EEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 45 VVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 45 vvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
+||+|.+|..++++|+..|. ++++.|.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~ 29 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFP 29 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 57999999999999999996 789988664
No 499
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=82.31 E-value=14 Score=34.77 Aligned_cols=70 Identities=21% Similarity=0.345 Sum_probs=44.8
Q ss_pred EEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCChHHHHHHHHHHhhCCceEEEEEeccCcc
Q 013224 43 ILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (447)
Q Consensus 43 VlvvG~-GglG~eiak~La~~Gvg~i~lvD~D~Ve~sNL~RqfLf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 121 (447)
|+|+|+ |.+|..++..|...|+ +++++=++. ....++.++.. ++++. ..+..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~---------------------~~~~~~~l~~~--g~~vv--~~d~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDP---------------------SSDRAQQLQAL--GAEVV--EADYDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSS---------------------HHHHHHHHHHT--TTEEE--ES-TT-
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEEEecc---------------------chhhhhhhhcc--cceEe--ecccCC
Confidence 789996 9999999999999776 455532111 22223344443 45543 344433
Q ss_pred --chhhccCCceEEEcccC
Q 013224 122 --KDISFYNDFNIIVLGLD 138 (447)
Q Consensus 122 --~~~~~~~~~DvVi~~~D 138 (447)
.-.+.+++.|.|+.++.
T Consensus 55 ~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp HHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHcCCceEEeecC
Confidence 22567899999999877
No 500
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.31 E-value=1.6 Score=43.86 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=32.0
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 013224 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (447)
Q Consensus 39 ~~~~VlvvG~GglG~eiak~La~~Gvg~i~lvD~D~ 74 (447)
..++|||.|||.+|--...-+-.+|..+|.++|-..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~ 204 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA 204 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence 378999999999999999999999999999998543
Done!