BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013226
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 193/312 (61%), Positives = 239/312 (76%)
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH 170
+++ RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI H
Sbjct: 1 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINH 60
Query: 171 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230
DVVEP+ +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STS
Sbjct: 61 DVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTS 120
Query: 231 EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
EVYGDP HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+G
Sbjct: 121 EVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFG 180
Query: 291 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNL 350
PRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NL
Sbjct: 181 PRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNL 240
Query: 351 GNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKG 410
GNP E T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +G
Sbjct: 241 GNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEG 300
Query: 411 LPLMVADFRHRI 422
L + FR +
Sbjct: 301 LNKAIHYFRKEL 312
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/311 (60%), Positives = 231/311 (74%)
Query: 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHD 171
++ RIL+TGGAGFVGSHL D+L G V VVDN+FTG+K N+ H G+ FELI HD
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHD 83
Query: 172 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231
VVEP+ +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLN LGLAKRVGAR LL STSE
Sbjct: 84 VVEPLYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSE 143
Query: 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGP 291
VYGDP HPQ+E YWG+VNPIG R+CYDEGKR AET Y + G+E R+ARIFNT+GP
Sbjct: 144 VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGP 203
Query: 292 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLG 351
R +DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ L + P NLG
Sbjct: 204 RXHXNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALXNSNVSSPVNLG 263
Query: 352 NPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
NP E T+LE A++++ ++ + I+F +DDP KRKPDI KAK LGWEP V L +GL
Sbjct: 264 NPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLXLGWEPVVPLEEGL 323
Query: 412 PLMVADFRHRI 422
+ FR +
Sbjct: 324 NKAIHYFRKEL 334
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 160/330 (48%), Gaps = 39/330 (11%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+RI+VTGGAGF+GSHLVD+L++ G V+VVDN +G+++ F NP EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-----FVNPSAELHVRDLKDY 55
Query: 176 IL---LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSE 231
++ D ++H A P+ NVV T N+L A++ G R + S+S
Sbjct: 56 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 115
Query: 232 VYGDP--LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
VYGD + P+ E Y PI S Y K E + Y R G+ R N
Sbjct: 116 VYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVV 168
Query: 290 GPRMCIDDGRVVSNFVAQALRKEP--LTVYGDGKQTRSFQFVSDLVEGLI----RLMEGD 343
GPR+ V+ +F+ + LR+ P L V GDG Q +S+ +V D VE + + E D
Sbjct: 169 GPRL---RHGVIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMD 224
Query: 344 HVGPF---NLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED------DPHKRKPDITK 394
PF N+GN +L++A++V E++ I P+T D D +TK
Sbjct: 225 --APFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTK 282
Query: 395 AKQLLGWEPRVTLRKGLPLMVADFRHRIFG 424
+L GW P +T + + D ++G
Sbjct: 283 LMKLTGWRPTMTSAEAVKKTAEDLAKELWG 312
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 156/348 (44%), Gaps = 79/348 (22%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVD--------------------NYFTGKKDN 155
+RI+VTGGAGF+GSHLVD+L++ G V+VVD ++ G K +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLKDYSWGAGIKGD 60
Query: 156 LIHHF-GNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 214
++ HF NP +R EPI VH+ NVV T N+L
Sbjct: 61 VVFHFAANPE---VRLSTTEPI----------------VHF--------NENVVATFNVL 93
Query: 215 GLAKRVGAR-FLLTSTSEVYGDP--LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271
A++ G R + S+S VYGD + P+ E Y PI S Y K E +
Sbjct: 94 EWARQTGVRTVVFASSSTVYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCAT 146
Query: 272 YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP--LTVYGDGKQTRSFQFV 329
Y R G+ R N GPR+ V+ +F+ + LR+ P L V GDG Q +S+ +V
Sbjct: 147 YARLFGVRCLAVRYANVVGPRL---RHGVIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYV 202
Query: 330 SDLVEGLI----RLMEGDHVGPF---NLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
D VE + + E D PF N+GN +L++A++V E++ I P+T
Sbjct: 203 RDAVEATLAAWKKFEEMD--APFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTP 260
Query: 383 D------DPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFG 424
D D +TK +L GW P +T + + D ++G
Sbjct: 261 DGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKELWG 308
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 147/319 (46%), Gaps = 14/319 (4%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
++L+I +TG GF+ SH+ RL G VI D K +++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 174 EPILL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 228
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 229 TSEVYGD--PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++ +Y + L+ + P + Y K E L Y++ GIE RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFH 204
Query: 287 NTYGPRMCIDDGRVVS--NFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + D
Sbjct: 205 NIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264
Query: 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
P N+G+ +M E+AE+V ++ I P E R D K+ LGW P
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 323
Query: 404 RVTLRKGLPLMVADFRHRI 422
+ L++GL + + +I
Sbjct: 324 NMRLKEGLRITYFWIKEQI 342
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 155/311 (49%), Gaps = 25/311 (8%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV----V 173
I+VTGGAGF+GSH+VD+L + + ++V+DN +G ++ F N L++ D+ +
Sbjct: 4 IVVTGGAGFIGSHVVDKLSE-SNEIVVIDNLSSGNEE-----FVNEAARLVKADLAADDI 57
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEV 232
+ L ++++H+A NP + + NV+ T +L ++ G +R + TSTS V
Sbjct: 58 KDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTV 117
Query: 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292
YG+ P E Y +PI S Y K E L Y ++A I R N G R
Sbjct: 118 YGEAKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRR 172
Query: 293 MCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH-VGPFNL 350
V+ +F+ + R E L + G+G+Q +S+ ++SD V+ ++ + GD V FN+
Sbjct: 173 ---STHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIFNI 229
Query: 351 GNPGEFTMLELAEVVQEIIDRNARIEFRPNT---EDDPHKRKPDITKAKQLLGWEPRVTL 407
G+ + + +AE+V E + + R F + D I K K+ LGW+PR
Sbjct: 230 GSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKR-LGWKPRYNS 288
Query: 408 RKGLPLMVADF 418
+ + + V D
Sbjct: 289 EEAVRMAVRDL 299
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 147/319 (46%), Gaps = 14/319 (4%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
++L+I +TG GF+ SH+ RL G VI D K +++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 174 EPILL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 228
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 229 TSEVYGD--PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++ +Y + L+ + P + Y K E L Y++ GIE RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFH 204
Query: 287 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + D
Sbjct: 205 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264
Query: 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
P N+G+ +M E+AE+V ++ I P E R D K+ LGW P
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 323
Query: 404 RVTLRKGLPLMVADFRHRI 422
+ L++GL + + +I
Sbjct: 324 NMRLKEGLRITYFWIKEQI 342
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 147/319 (46%), Gaps = 14/319 (4%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
++L+I +TG GF+ SH+ RL G VI D K +++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 174 EPILL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 228
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 229 TSEVYGD--PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++ +Y + L+ + P + Y + E L Y++ GIE RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECRIGRFH 204
Query: 287 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + D
Sbjct: 205 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264
Query: 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
P N+G+ +M E+AE+V ++ I P E R D K+ LGW P
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 323
Query: 404 RVTLRKGLPLMVADFRHRI 422
+ L++GL + + +I
Sbjct: 324 NMRLKEGLRITYFWIKEQI 342
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 147/319 (46%), Gaps = 14/319 (4%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
++L+I +TG GF+ SH+ RL G VI D K +++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 174 EPILL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 228
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 229 TSEVYGD--PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++ +Y + L+ + P + + K E L Y++ GIE RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFH 204
Query: 287 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + D
Sbjct: 205 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264
Query: 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
P N+G+ +M E+AE+V ++ I P E R D K+ LGW P
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 323
Query: 404 RVTLRKGLPLMVADFRHRI 422
+ L++GL + + +I
Sbjct: 324 NMRLKEGLRITYFWIKEQI 342
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 143/319 (44%), Gaps = 22/319 (6%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRG------DSVIVVDNY-FTGKKDNLIHHFGNPRFELI 168
+R+LVTGGAGF+GSH V +L+ D VIV+D+ + G + NL +PR +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 169 RHDVVEPILLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 222
D+ + LL VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 223 RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARI 282
R + ST EVYG W +P+ S Y K ++ + YHR G++ RI
Sbjct: 121 RVVHVSTDEVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 283 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
R N YGP + +++ FV L L +YGDG R + D G+ ++ G
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
Query: 343 DHVGP-FNLGNPGEFTMLELAEVVQEIIDRN-ARIEFRPNTEDDPHKRKPDITKAKQLLG 400
G +++G E T EL ++ + + + + + + + + D K ++ LG
Sbjct: 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293
Query: 401 WEPRVTLRKGLPLMVADFR 419
+ P+V+ GL V +R
Sbjct: 294 YRPQVSFADGLARTVRWYR 312
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 144/319 (45%), Gaps = 22/319 (6%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRG------DSVIVVDNY-FTGKKDNLIHHFGNPRFELI 168
+R+LVTGGAGF+GSH V +L+ D VIV+D+ + G + NL +PR +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 169 RHDVVEPILLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 222
D+ + LL VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 223 RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARI 282
R + ST++VYG W +P+ S Y K ++ + YHR G++ RI
Sbjct: 121 RVVHVSTNQVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 283 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
R N YGP + +++ FV L L +YGDG R + D G+ ++ G
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
Query: 343 DHVGP-FNLGNPGEFTMLELAEVVQEIIDRN-ARIEFRPNTEDDPHKRKPDITKAKQLLG 400
G +++G E T EL ++ + + + + + + + + D K ++ LG
Sbjct: 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293
Query: 401 WEPRVTLRKGLPLMVADFR 419
+ P+V+ GL V +R
Sbjct: 294 YRPQVSFADGLARTVRWYR 312
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 142/311 (45%), Gaps = 32/311 (10%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH----HFGNPRFELIRHDVV 173
IL+ GGAG++GSH V +L+D G SV+VVDN TG +D + + G+ R + DV
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVF 63
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
+E + H A + P++ NV G L +L + +F+ +ST+
Sbjct: 64 TQENIEA--VMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAAT 121
Query: 233 YGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG- 290
YG+ + ET NP + Y E K E + Y + + +I R FN G
Sbjct: 122 YGEVDVDLITEETM---TNPT---NTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGA 175
Query: 291 -PRMCI-DDGRVVSNFVAQAL-----RKEPLTVYG------DGKQTRSFQFVSDLVE--- 334
P I +D R ++ + L ++E + ++G DG R + V DLV
Sbjct: 176 TPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHF 235
Query: 335 -GLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDIT 393
GL L G +NLGN F++ E+ + V+E+ + E P DP +
Sbjct: 236 LGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQ 295
Query: 394 KAKQLLGWEPR 404
KAK+ LGW+PR
Sbjct: 296 KAKEKLGWDPR 306
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 149/322 (46%), Gaps = 23/322 (7%)
Query: 105 GKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN---YFTGKKDNLIHHFG 161
G L Q + ILVTGGAGF+GS+ V + ++ +++ ++G +N+
Sbjct: 14 GTENLYFQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQD 73
Query: 162 NPRFELIRHDVVEPILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 214
+P + ++ ++ LLE V I + A + NP+ TNV+GT+ +L
Sbjct: 74 HPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLL 133
Query: 215 GLAKRV-GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 273
L K+ + + ST EVYG + + + P+ S Y K +A+ + + Y+
Sbjct: 134 ELVKKYPHIKLVQVSTDEVYGSLGKTGR----FTEETPLAPNSPYSSSKASADXIALAYY 189
Query: 274 RGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333
+ + + R N YGP + +++ V AL + L +YGDG R + V+D
Sbjct: 190 KTYQLPVIVTRCSNNYGPYQYPE--KLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTDHC 247
Query: 334 EGLIRLMEGDHVGP-FNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTEDDPHKRKPD 391
+ ++ VG +N+G E T +E+ E + ++ + + IE+ T+ H R+
Sbjct: 248 SAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYV--TDRLGHDRRYA 305
Query: 392 IT--KAKQLLGWEPRVTLRKGL 411
I K K WEP+ T +GL
Sbjct: 306 INAEKXKNEFDWEPKYTFEQGL 327
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 148/311 (47%), Gaps = 23/311 (7%)
Query: 115 SLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKK-DNLIHHFGNPRFELIRHD 171
S+++LVTGG GF+GS+ + ++++ VI +D G NL +PR+ ++ D
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 172 V-----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARF 224
V V+ ++ +VD + HLA + +P + +NV+GT +L +R RF
Sbjct: 63 VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 225 LLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIAR 284
+ ST EVYGD L+ E + + S Y K ++ L + + R + A I R
Sbjct: 123 VHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITR 177
Query: 285 IFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-IRLMEGD 343
N YGP + +++ + +A + +YG GK R + +V D V + + L++G+
Sbjct: 178 CTNNYGPYQFPE--KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE 235
Query: 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPH---KRKPDITKAKQLLG 400
+N+ E T LE+ +++ ++ + E ED P + D K + L
Sbjct: 236 SREIYNISAGEEKTNLEVVKIILRLMGKGE--ELIELVEDRPGHDLRYSLDSWKITRDLK 293
Query: 401 WEPRVTLRKGL 411
W P+ T +G+
Sbjct: 294 WRPKYTFDEGI 304
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 152/344 (44%), Gaps = 40/344 (11%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFE---LIRH 170
K+ ++L+ G GF+G HL R+++ D + + T + +L+ H FE I
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINK 82
Query: 171 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230
+ VE + + D I L A+P Y P++ + + L ++ A + G + STS
Sbjct: 83 EWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 142
Query: 231 EVYG---DPLQHPQAETY-WGNVN-PIGVRSCYDEGKRTAETLTMDYHRGL-GIEARIAR 284
EVYG D P A +G +N P + +C K+ + + Y G+ G+ + R
Sbjct: 143 EVYGMCADEQFDPDASALTYGPINKPRWIYAC---SKQLMDRVIWGY--GMEGLNFTLFR 197
Query: 285 IFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338
FN GP + RVV+ F+ +R E +++ G Q R+F +V D + L++
Sbjct: 198 PFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMK 257
Query: 339 LME---GDHVGP-FNLGNP-GEFT-------MLELAEVVQEIIDRNARIE--------FR 378
++E G G +N+GNP F+ MLELA E D R++ +
Sbjct: 258 IIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYY 317
Query: 379 PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRI 422
N D R P I Q LGW P+ T L + +R +
Sbjct: 318 GNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHV 361
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 147/345 (42%), Gaps = 43/345 (12%)
Query: 104 GGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN- 162
G P R+ R+L+ G GF+G+HL +RL+ R D V Y + I F N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL-REDHYEV---YGLDIGSDAISRFLNH 57
Query: 163 PRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL 216
P F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 58 PHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRY 117
Query: 217 AKRVGARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY 272
+ R + STSEVYG + G VN R Y K+ + + Y
Sbjct: 118 CVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAY 175
Query: 273 HRGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F
Sbjct: 176 GEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 235
Query: 327 QFVSDLVEGLIRLME--GDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP- 379
+ D +E L R++E G+ N+GNP E ++ EL E++ +++ R F P
Sbjct: 236 TDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 380 -------------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D RKP I A + L WEP++ +++ +
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 146/341 (42%), Gaps = 43/341 (12%)
Query: 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN-PRFE 166
P R+ R+L+ G GF+G+HL +RL+ R D V Y + I F N P F
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLL-REDHYEV---YGLDIGSDAISRFLNHPHFH 363
Query: 167 LIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV 220
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 364 FVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY 423
Query: 221 GARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL 276
R + STSEVYG + G VN R Y K+ + + Y
Sbjct: 424 RKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKE 481
Query: 277 GIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 482 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 541
Query: 331 DLVEGLIRLME--GDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP----- 379
D +E L R++E G+ N+GNP E ++ EL E++ +++ R F P
Sbjct: 542 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 601
Query: 380 ---------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D RKP I A + L WEP++ +++ +
Sbjct: 602 VVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 642
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 142/327 (43%), Gaps = 37/327 (11%)
Query: 117 RILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVVE 174
+IL+TGGAGF+GS LV +++ D+V+VVD + G +L + RF + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 175 PILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 217
L + D + HLA + P I+TN+VGT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 218 KRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
K+ RF ST EVYGD + ++ P S Y K +++ L + R G
Sbjct: 123 KKSAFRFHHISTDEVYGDL---HSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 278 IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337
+ I N YGP + +++ + AL + L VYG+G+Q R + +V D L
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALY 237
Query: 338 RLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNA------------RIEFRPNTEDD 384
+ VG +N+G E L++ E + E+++ A I F +
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGH 297
Query: 385 PHKRKPDITKAKQLLGWEPRVTLRKGL 411
+ D +K + LG P+ T G+
Sbjct: 298 DLRYAIDASKIARELGCVPQETFESGM 324
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 147/345 (42%), Gaps = 43/345 (12%)
Query: 104 GGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN- 162
G P R+ R+L+ G GF+G+HL +RL+ R D V Y + I F N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL-REDHYEV---YGLDIGSDAISRFLNH 57
Query: 163 PRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL 216
P F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 58 PHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRY 117
Query: 217 AKRVGARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY 272
+ R + ST+EVYG + G VN R Y K+ + + Y
Sbjct: 118 CVKYRKRIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAY 175
Query: 273 HRGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F
Sbjct: 176 GEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 235
Query: 327 QFVSDLVEGLIRLME--GDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP- 379
+ D +E L R++E G+ N+GNP E ++ EL E++ +++ R F P
Sbjct: 236 TDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 380 -------------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D RKP I A + L WEP++ +++ +
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 31/319 (9%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN------LIHHFGNPRFELIRHDV 172
L+TG AGF+GS+L+++L+ VI +DN+ TG + N L+ RF I D+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 173 -----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 226
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 148
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 149 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 203
Query: 287 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-----GLIRL 339
N +G R + V+ + A L+ + + + GDG+ +R F ++ ++++ L +
Sbjct: 204 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD 263
Query: 340 MEGDHVGPFNLGNPGEFTMLELAEVVQEIID-----RNARIEFRPNTEDDPHKRKPDITK 394
D++ +N+ T+ EL+ + + ++ I++R D + D+TK
Sbjct: 264 SAKDNI--YNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRASQADVTK 321
Query: 395 AKQLLGWEPRVTLRKGLPL 413
A LL + P + +R+GL L
Sbjct: 322 AIDLLKYRPNIKIREGLRL 340
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 31/319 (9%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN------LIHHFGNPRFELIRHDV 172
L+TG AGF+GS+L+++L+ VI +DN+ TG + N L+ RF I D+
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101
Query: 173 -----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 226
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 102 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 161
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 162 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 216
Query: 287 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-----GLIRL 339
N +G R + V+ + A L+ + + + GDG+ +R F ++ ++++ L +
Sbjct: 217 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD 276
Query: 340 MEGDHVGPFNLGNPGEFTMLELAEVVQEIID-----RNARIEFRPNTEDDPHKRKPDITK 394
D++ +N+ T+ EL+ + + ++ I++R D + D+TK
Sbjct: 277 SAKDNI--YNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTK 334
Query: 395 AKQLLGWEPRVTLRKGLPL 413
A LL + P + +R+GL L
Sbjct: 335 AIDLLKYRPNIKIREGLRL 353
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 38/316 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSV--IVVDNY-FTGKKDNLIHHFGNPRFELIRHDVV 173
I+VTGGAGF+GS+ V + + V V+D + G K NL G+ R EL+ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGD-RVELVVGDIA 64
Query: 174 EPILLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
+ L++ D I H A + + +P I TN +GT +L A++ RF S
Sbjct: 65 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 124
Query: 229 TSEVYGD-------------PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG 275
T EVYGD P + AET N NP S Y K ++ + + R
Sbjct: 125 TDEVYGDLPLREDLPGHGEGPGEKFTAET---NYNP---SSPYSSTKAASDLIVKAWVRS 178
Query: 276 LGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333
G++A I+ N YGP I+ R ++N +A K +YG+GK R + +D
Sbjct: 179 FGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPK----LYGEGKNVRDWIHTNDHS 234
Query: 334 EGLIRLMEGDHVGP-FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPH--KRKP 390
G+ ++ +G + +G GE E+ E++ E + + + + T+ H +
Sbjct: 235 TGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQ-PKDAYDHVTDRAGHDLRYAI 293
Query: 391 DITKAKQLLGWEPRVT 406
D +K + LGW P+ T
Sbjct: 294 DASKLRDELGWTPQFT 309
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 31/319 (9%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN------LIHHFGNPRFELIRHDV 172
L+TG AGF+GS+L+++L+ VI +DN+ TG + N L+ RF I D+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 173 -----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 226
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 148
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 149 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 203
Query: 287 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-----GLIRL 339
N +G R + V+ + A L+ + + + GDG+ +R F ++ ++++ L +
Sbjct: 204 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD 263
Query: 340 MEGDHVGPFNLGNPGEFTMLELAEVVQEIID-----RNARIEFRPNTEDDPHKRKPDITK 394
D++ +N+ T+ EL+ + + ++ I++R D + D+TK
Sbjct: 264 SAKDNI--YNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTK 321
Query: 395 AKQLLGWEPRVTLRKGLPL 413
A LL + P + +R+GL L
Sbjct: 322 AIDLLKYRPNIKIREGLRL 340
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 31/319 (9%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN------LIHHFGNPRFELIRHDV 172
L+TG AGF+GS+L+++L+ VI +DN+ TG + N L+ RF I D+
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 82
Query: 173 -----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 226
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 83 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 142
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 143 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 197
Query: 287 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-----GLIRL 339
N +G R + V+ + A L+ + + + GDG+ +R F ++ ++++ L +
Sbjct: 198 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD 257
Query: 340 MEGDHVGPFNLGNPGEFTMLELAEVVQEIID-----RNARIEFRPNTEDDPHKRKPDITK 394
D++ +N+ T+ EL+ + + ++ I++R D + D+TK
Sbjct: 258 SAKDNI--YNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTK 315
Query: 395 AKQLLGWEPRVTLRKGLPL 413
A LL + P + +R+GL L
Sbjct: 316 AIDLLKYRPNIKIREGLRL 334
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 144/333 (43%), Gaps = 28/333 (8%)
Query: 104 GGKVPLGLQRKSL---RILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHH 159
G +P+ + L ++V GGAGFVGS+LV RL++ G + V VVDN + +K N+ H
Sbjct: 18 GSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDH 77
Query: 160 FGNPRFELIRHDVVEPILL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNM- 213
P + + LL E D ++HLA +P+ + N + TL +
Sbjct: 78 ---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLY 134
Query: 214 --LGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271
L KR+ + + +A V+ S Y K E ++
Sbjct: 135 ERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVY 194
Query: 272 YHRGLGIEARIARIFNTYGPRMCIDDGR-----------VVSNFVAQALRKEPLTVYGDG 320
YH+ + AR N YGP + GR V F+ +AL+ PL + G
Sbjct: 195 YHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGG 254
Query: 321 KQTRSFQFVSDLVEGLIRL-MEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRP 379
TR F FV D+ GLI +G G +N+ + E ++ +LA + EI N ++ P
Sbjct: 255 VATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLP 314
Query: 380 NTE-DDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D+ KR KA++ LG+ V++ GL
Sbjct: 315 KRPWDNSGKRFGSPEKARRELGFSADVSIDDGL 347
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 146/345 (42%), Gaps = 43/345 (12%)
Query: 104 GGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN- 162
G P R+ R+L+ G GF+G+HL +RL+ R D V Y + I F N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL-REDHYEV---YGLDIGSDAISRFLNH 57
Query: 163 PRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL 216
P F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 58 PHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRY 117
Query: 217 AKRVGARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY 272
+ R + STSEVYG + G VN R Y K+ + + Y
Sbjct: 118 CVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAY 175
Query: 273 HRGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F
Sbjct: 176 GEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 235
Query: 327 QFVSDLVEGLIRLME--GDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP- 379
+ D +E L R++E G+ N+GNP E ++ EL E++ +++ R F P
Sbjct: 236 TDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 380 -------------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D KP I A + L WEP++ +++ +
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHEKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 37/330 (11%)
Query: 116 LRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVV 173
++IL+TGGAGF+GS +V ++ + D+V+ +D + G ++L + R+ D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---- 222
+ + + D + HLA + P I+TN+VGT +L +A++ +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 223 ------RFLLTSTSEVYGDPLQHP-QAET-----YWGNVNPIGVRSCYDEGKRTAETLTM 270
RF ST EVYGD L HP + E + S Y K +++ L
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 271 DYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330
+ R G+ + N YGP + +++ + AL +PL +YG G Q R + +V
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 331 DLVEGL-IRLMEGDHVGPFNLGNPGE-------FTMLELA-EVVQEIIDRNARIEFRPNT 381
D L + + EG +N+G E FT+ +L E+V + +I + +
Sbjct: 238 DHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADR 297
Query: 382 EDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
+ D K + LGW+P T G+
Sbjct: 298 PGHDRRYAIDAGKISRELGWKPLETFESGI 327
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 154/330 (46%), Gaps = 26/330 (7%)
Query: 111 LQRKSL--RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRF-EL 167
+QR +L RIL+TGGAGF+G HL L+ G+ V V+D+ + +I G +F E
Sbjct: 1 MQRNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDL---RVPPMIPPEGTGKFLEK 57
Query: 168 IRHDVVEPILLEVDQIYHLACPAS-PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFL 225
++ E L +V +YHLA S P +K P+ + NV ++L L VG + +
Sbjct: 58 PVLELEERDLSDVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGRHLLALCTSVGVPKVV 115
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG-LGIEARIAR 284
+ ST EVYG P E +P+ RS Y K E + + R + E I R
Sbjct: 116 VGSTCEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVR 170
Query: 285 IFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH 344
FN YGP D +V A L + L V GDG+Q R F +++D+V+ L+ L
Sbjct: 171 FFNVYGPGERPD--ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPL 228
Query: 345 VGPFNLGNPGEFTMLELAEVVQEI--IDRNARIEFRPN--TE--DDPHKRKPDITKAKQL 398
N G+ ++ ++ ++Q AR + RPN TE D + I +
Sbjct: 229 PSVVNFGSGQSLSVNDVIRILQATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGG 288
Query: 399 LGWEP--RVTLRKGLPLMVADFRHRIFGDQ 426
+G E R+TL + D R RIF ++
Sbjct: 289 IGIEEGIRLTLEWWQSRDLDDIRQRIFQEE 318
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 144/333 (43%), Gaps = 43/333 (12%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN-PRFELIRHDV-- 172
+R+L+ G GF+G+HL +RL+ R D V Y + I F N P F + D+
Sbjct: 1 MRVLILGVNGFIGNHLTERLL-REDHYEV---YGLDIGSDAISRFLNHPHFHFVEGDISI 56
Query: 173 ----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
+E + + D + L A+P+ Y NP++ + + L ++ + R + S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 229 TSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIAR 284
TSEVYG + G VN R Y K+ + + Y G++ + R
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFR 174
Query: 285 IFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338
FN GPR+ I R ++ + + P+ + GKQ R F + D +E L R
Sbjct: 175 PFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYR 234
Query: 339 LME--GDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP------------- 379
++E G+ N+GNP E ++ EL E++ +++ R F P
Sbjct: 235 IIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYY 294
Query: 380 -NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D RKP I A + L WEP++ +++ +
Sbjct: 295 GKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 327
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 146/345 (42%), Gaps = 43/345 (12%)
Query: 104 GGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN- 162
G P R+ R+L+ G GF+G+HL +RL+ R D V Y + I F N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL-REDHYEV---YGLDIGSDAISRFLNH 57
Query: 163 PRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL 216
P F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 58 PHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRY 117
Query: 217 AKRVGARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY 272
+ R + STSEVYG + G VN R Y K+ + + Y
Sbjct: 118 CVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAY 175
Query: 273 HRGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F
Sbjct: 176 GEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 235
Query: 327 QFVSDLVEGLIRLME--GDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP- 379
+ D +E L R++E G+ N+GNP E ++ EL E++ +++ R F P
Sbjct: 236 TDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 380 -------------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D KP I A + L WEP++ +++ +
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHYKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 146/345 (42%), Gaps = 43/345 (12%)
Query: 104 GGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN- 162
G P R+ R+L+ G GF+G+HL +RL+ R D V Y + I F N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL-REDHYEV---YGLDIGSDAISRFLNH 57
Query: 163 PRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL 216
P F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 58 PHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRY 117
Query: 217 AKRVGARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY 272
+ R + STSEVYG + G VN R Y K+ + + Y
Sbjct: 118 CVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAY 175
Query: 273 HRGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F
Sbjct: 176 GEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCF 235
Query: 327 QFVSDLVEGLIRLME--GDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP- 379
+ D +E L R++E G+ N+GNP E ++ EL E++ +++ R F P
Sbjct: 236 TDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 380 -------------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D KP I A + L WEP++ +++ +
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHMKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 22/317 (6%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+R+LVTGGAGF+GSH+V+ L+ RG V V+DN TGK++N+ R +L + VE
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVER 60
Query: 176 ILLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS--E 231
E + H A AS +PV + N++G LN+L ++ G L+ +++
Sbjct: 61 AFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGA 120
Query: 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGP 291
+YG+ + +AE W P +S Y K E Y + G++ R N YGP
Sbjct: 121 IYGEVPEGERAEETW----PPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGP 176
Query: 292 RMCI-DDGRVVSNFVAQALRKEPLTVY-----GDGKQTRSFQFVSDLVEG-LIRLMEGDH 344
R + VV+ F + L+ P+T+Y GD R + +V D+ E + L +
Sbjct: 177 RQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSLE- 235
Query: 345 VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLL--GWE 402
G +N+G T E+ V E + ++ P D + + +L+ GW
Sbjct: 236 -GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLER---SVLSPLKLMAHGWR 291
Query: 403 PRVTLRKGLPLMVADFR 419
P+V ++G+ L V FR
Sbjct: 292 PKVGFQEGIRLTVDHFR 308
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 145/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+ST+ VYGD + P E++ P G +S Y + K E + D + +
Sbjct: 121 FSSTATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 145/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+S++ VYGD + P E++ P G +S Y + K E + D + +
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 145/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+S++ VYGD + P E++ P G +S Y + K E + D + +
Sbjct: 121 FSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 145/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+S++ VYGD + P E++ P G +S Y + K E + D + +
Sbjct: 121 FSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPACWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 144/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+S + VYGD + P E++ P G +S Y + K E + D + +
Sbjct: 121 FSSAATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 144/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+S + VYGD + P E++ P G +S Y + K E + D + +
Sbjct: 121 FSSAATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 144/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+S + VYGD + P E++ P G +S Y + K E + D + +
Sbjct: 121 FSSVATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 145/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+S++ VYGD + P E++ P G +S + + K E + D + +
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 148/335 (44%), Gaps = 42/335 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF-TGKKDNL--IHHFGNPRFELI----- 168
++L+TGG GF+GS+L + +G +IV DN G DNL + GN FE +
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGN--FEFVHGDIR 60
Query: 169 -RHDVVEPILLEV-DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RF 224
++DV I + D +HLA + NP + NV GTLN+L ++ +
Sbjct: 61 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 120
Query: 225 LLTSTSEVYGDPLQHPQAET---YWGNVNPIG--------VRSCYDEGKRTAETLTMDYH 273
+ +ST++VYGD Q+ ET Y P G S Y K A+ +DY
Sbjct: 121 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 180
Query: 274 RGLGIEARIARIFNTYGPR-MCIDDGRVVSNFVAQALR-----KEPLTVYGDGKQTRSFQ 327
R G+ + R + YG R D V F +A+ +P T+ G+GKQ R
Sbjct: 181 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVL 240
Query: 328 FVSDLVE------GLIRLMEGDHVGPFNLGNP--GEFTMLELAEVVQEIIDRNARIEFRP 379
D++ + + G+ FN+G ++LEL +++++ + + R P
Sbjct: 241 HAEDMISLYFTALANVSKIRGN---AFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP 297
Query: 380 NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLM 414
E D DI K + W P+V+ + G+ M
Sbjct: 298 VRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKM 332
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 144/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+S + VYGD + P E++ P G +S + + K E + D + +
Sbjct: 121 FSSAATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 144/338 (42%), Gaps = 44/338 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
L+ +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGL-GIEARIA 283
+S + VYGD + P E++ P G +S + + K E + D + +
Sbjct: 121 FSSAATVYGDNPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 284 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 328
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 329 VSDLVEGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DL +G + ME G H+ +NLG ++L++ + + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D D +KA + L W RVT + L M D H
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQDTWH 327
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 148/332 (44%), Gaps = 49/332 (14%)
Query: 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV-- 172
S+R L+TG AGFVG +L + L ++ V F ++N P E+I D+
Sbjct: 12 SMRALITGVAGFVGKYLANHLTEQNVEV------FGTSRNN---EAKLPNVEMISLDIMD 62
Query: 173 ---VEPILLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFL 225
V+ ++ ++ D I+HLA +S N T TNV GTL++L + + R L
Sbjct: 63 SQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRIL 122
Query: 226 LTSTSEVYGD--PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA 283
+SE YG P + P +E N + S Y K + L Y + G++
Sbjct: 123 TIGSSEEYGMILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHT 177
Query: 284 RIFNTYGPRMCIDDGRVVSNFVAQAL-----RKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338
R FN GP + G V +F Q + ++EP+ G+ + R F V D+V+
Sbjct: 178 RTFNHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWL 235
Query: 339 LMEGDHVGP-FNLGNPGEFTMLELAEVVQEIID-RNARIEFRPNTEDDPHKRKPD----- 391
L + G +N+ + + +Q+++D A + +TE +P + +P
Sbjct: 236 LSQYGKTGDVYNVCSG-------IGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTL 288
Query: 392 ITKAKQL---LGWEPRVTLRKGLPLMVADFRH 420
I K+L GW+PR+ L K L ++ +R
Sbjct: 289 IGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 142/321 (44%), Gaps = 31/321 (9%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN------LIHHFGNPRFELIRHDV 172
L+TG AGF+GS+L++ L+ V+ +DN+ TG + N L+ F+ I+ D+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 173 -----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 226
VD + H A S +P+ + TN+ G LNML A+ + F
Sbjct: 91 RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTY 150
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++S YGD P+ E G P+ S Y K E + R G R F
Sbjct: 151 AASSSTYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGFSTIGLRYF 205
Query: 287 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG-LIRLMEG- 342
N +G R + V+ + + ++ + + + GDG+ +R F ++ + V+ L+ G
Sbjct: 206 NVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGL 265
Query: 343 ---DHVGPFNLGNPGEFTMLELAEVVQEIIDRNA-----RIEFRPNTEDDPHKRKPDITK 394
+ V +N+ G ++ +L +++ + N +R E D DI+K
Sbjct: 266 DARNQV--YNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISK 323
Query: 395 AKQLLGWEPRVTLRKGLPLMV 415
A +LLG+ P+ + G+ L +
Sbjct: 324 AAKLLGYAPKYDVSAGVALAM 344
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 151/355 (42%), Gaps = 67/355 (18%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVV----DNYFTGKKDNLIH--HFGNPRFELIRHDV 172
L+TG G GS+L + L+++G V + ++ T + D++ H NP+F L D+
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL 64
Query: 173 VEP-----ILLEV--DQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNML------GLAK 218
+ IL EV D++Y+L S V F +P T + +GTL +L GL K
Sbjct: 65 SDTSNLTRILREVQPDEVYNLGA-MSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 219 RVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGI 278
+ RF STSE+YG + PQ ET P RS Y K A +T++Y G+
Sbjct: 124 KT--RFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGM 176
Query: 279 EARIARIFNTYGPR-----MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333
A +FN PR + R ++N +AQ L E G+ R + D V
Sbjct: 177 YACNGILFNHESPRRGETFVTRKITRAIAN-IAQGL--ESCLYLGNMDSLRDWGHAKDYV 233
Query: 334 EGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED---------- 383
+ +++ + F + ++++ + E+ + R E E
Sbjct: 234 KMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHD 293
Query: 384 -------------DPHKRKP--------DITKAKQLLGWEPRVTLRKGLPLMVAD 417
DP +P D TKA + LGW+P +TLR+ + MVA+
Sbjct: 294 APGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVAN 348
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 124/269 (46%), Gaps = 30/269 (11%)
Query: 118 ILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNY-----FTGKKDNLIHHFGNP---RFEL 167
IL+TGGAGFVGS+L + V+V+D + F+ + + + HF N + E+
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 168 IRHDVVEPI------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
I D+ P+ L D ++H A + N +KTN LN+L +A+
Sbjct: 73 IAADINNPLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIARSKK 130
Query: 222 ARFLLTSTSEVYGDPLQHPQAETYWG-NVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEA 280
A+ + S++ VYG+ +A G N +P + Y K + + H ++
Sbjct: 131 AKVIYASSAGVYGNT----KAPNVVGKNESP---ENVYGFSKLCMDEFVLS-HSNDNVQV 182
Query: 281 RIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338
+ R FN YGPR + +V A+ + + ++ G+Q R F ++ D+++ ++
Sbjct: 183 GL-RYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVK 241
Query: 339 LMEGDHVGPFNLGNPGEFTMLELAEVVQE 367
M+ G +N+G + E+ +++E
Sbjct: 242 AMKAQKSGVYNVGYSQARSYNEIVSILKE 270
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 138/327 (42%), Gaps = 35/327 (10%)
Query: 105 GKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR 164
G VP G K ++ +TG G +GSH+ + L++RGD V+ +DN+ TG++++L H P
Sbjct: 13 GLVPRGSHMK--KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH---PN 67
Query: 165 FELIRHDVVEPIL-------LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 217
+ + + L L+ D + H A +N TN VG N++ A
Sbjct: 68 LTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAA 124
Query: 218 KR--VGARFLLTSTSEVYG-DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR 274
K+ VG RF+ T+ YG P+Q P + N S Y K E DY
Sbjct: 125 KKNNVG-RFVYFQTALCYGVKPIQQPVRLDHPRNP----ANSSYAISKSANE----DYLE 175
Query: 275 GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334
G++ R+ N GPR G + F + K+ K R F FV DL
Sbjct: 176 YSGLDFVTFRLANVVGPRNV--SGPLPIFFQRLSEGKKCFVT----KARRDFVFVKDLAR 229
Query: 335 GLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNA--RIEFRPNTEDDPHKRKPDI 392
+R ++G G ++ + + + EL + V E + + E R DD D
Sbjct: 230 ATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDP 289
Query: 393 TKAKQLLGWEPRVTLRKGLPLMVADFR 419
++ Q G L++ + VA FR
Sbjct: 290 SRTIQDFGKIEFTPLKETVAAAVAYFR 316
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 144/340 (42%), Gaps = 48/340 (14%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY---FTGKKD-----NLIHHFGNPRFELI 168
++LVTGGAG++GSH V L++ G +V+DN+ F G + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 169 RHDVVEPILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 222 AR-FLLTSTSEVYGDPLQHPQAETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRG-LG 277
+ + +S++ VYG+P P E + G NP Y + K E + D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 278 IEARIARIFNTYGPRM--CI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQ 322
A + R FN G CI +D + + N +V+Q R+E L V+G DG
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 323 TRSFQFVSDLVEGLI----RLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFR 378
R + V DL +G I +L E +NLG +++L++ + +++ + +
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 379 PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADF 418
E D + + A++ LGW T GL M D
Sbjct: 298 ARREGDVAACYANPSLAQEELGW----TAALGLDRMCEDL 333
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 143/362 (39%), Gaps = 77/362 (21%)
Query: 116 LRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNYF-TGKKDNLIHHFGNPRFELIRHDVV 173
+R+LV GGAG++GSH V L+ D SV++VD+ T K + + N +L + D
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 174 EP------ILLEV-------------------DQIYHLACPASPVHYKFNPVKTIKTNVV 208
+P LEV D + H+ + +P+K NVV
Sbjct: 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVV 122
Query: 209 GTLNML-GLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV------RSCYDEG 261
G L +L + + + +S++ ++G+P + N PI + S Y E
Sbjct: 123 GILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVST----NAEPIDINAKKSPESPYGES 178
Query: 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPR---------------MCIDDGRVVSNFV- 305
K AE + D GI+ R FN G + I GRV+S+
Sbjct: 179 KLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238
Query: 306 -------AQALRKEPLTVYG------DGKQTRSFQFVSDLVEGLIRLMEG-DHVGP---- 347
A + + ++G DG R + V DL I ++ + +GP
Sbjct: 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKS 298
Query: 348 -----FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWE 402
FNLG +++ E+ EV ++ + E DP KA+++LGW+
Sbjct: 299 KYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWK 358
Query: 403 PR 404
P+
Sbjct: 359 PK 360
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 143/340 (42%), Gaps = 48/340 (14%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY---FTGKKD-----NLIHHFGNPRFELI 168
++LVTGGAG++GSH V L++ G +V+DN+ F G + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 169 RHDVVEPILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 222 AR-FLLTSTSEVYGDPLQHPQAETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRG-LG 277
+ + +S++ VYG+P P E + G NP Y + K E + D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 278 IEARIARIFNTYGPRM--CI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQ 322
+ R FN G CI +D + + N +V+Q R+E L V+G DG
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 323 TRSFQFVSDLVEGLI----RLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFR 378
R + V DL +G I +L E +NLG +++L++ + +++ + +
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 379 PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADF 418
E D + + A++ LGW T GL M D
Sbjct: 298 ARREGDVAACYANPSLAQEELGW----TAALGLDRMCEDL 333
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 143/340 (42%), Gaps = 48/340 (14%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY---FTGKKD-----NLIHHFGNPRFELI 168
++LVTGGAG++GSH V L++ G +V+DN+ F G + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 169 RHDVVEPILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 222 AR-FLLTSTSEVYGDPLQHPQAETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRG-LG 277
+ + +S++ VYG+P P E + G NP Y + K E + D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 278 IEARIARIFNTYGPRM--CI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQ 322
+ R FN G CI +D + + N +V+Q R+E L V+G DG
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 323 TRSFQFVSDLVEGLI----RLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFR 378
R + V DL +G I +L E +NLG +++L++ + +++ + +
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 379 PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADF 418
E D + + A++ LGW T GL M D
Sbjct: 298 ARREGDVAACYANPSLAQEELGW----TAALGLDRMCEDL 333
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 128/301 (42%), Gaps = 22/301 (7%)
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH 170
L +S+RILVTGG+G VG + +++ G + D F KD + R
Sbjct: 2 LYFQSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDADLTDTAQTR---ALF 57
Query: 171 DVVEPILLEVDQIYHLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
+ V+P + HLA + + K+N + + NV N+L A VGAR +++
Sbjct: 58 EKVQPT-----HVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSC 111
Query: 229 TSE-VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
S ++ D +P ET N P Y KR + Y + G N
Sbjct: 112 LSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTN 171
Query: 288 TYGP--RMCIDDGRVVSNFVAQA-LRK---EPLTVYGDGKQTRSFQFVSDLVEGLIRLM- 340
+GP I+DG V+ + + L K LTV+G G R F + DL + I ++
Sbjct: 172 VFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLR 231
Query: 341 EGDHVGP--FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQL 398
E + V P ++G E ++ E AE V E +D + + F D K+ +K +
Sbjct: 232 EYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTY 291
Query: 399 L 399
L
Sbjct: 292 L 292
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 128/301 (42%), Gaps = 22/301 (7%)
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH 170
L +S+RILVTGG+G VG + +++ G + D F KD + R
Sbjct: 3 LYFQSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDADLTDTAQTR---ALF 58
Query: 171 DVVEPILLEVDQIYHLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
+ V+P + HLA + + K+N + + NV N+L A VGAR +++
Sbjct: 59 EKVQPT-----HVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSC 112
Query: 229 TSE-VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
S ++ D +P ET N P Y KR + Y + G N
Sbjct: 113 LSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTN 172
Query: 288 TYGP--RMCIDDGRVVSNFVAQA-LRK---EPLTVYGDGKQTRSFQFVSDLVEGLIRLM- 340
+GP I+DG V+ + + L K LTV+G G R F + DL + I ++
Sbjct: 173 VFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLR 232
Query: 341 EGDHVGP--FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQL 398
E + V P ++G E ++ E AE V E +D + + F D K+ +K +
Sbjct: 233 EYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTY 292
Query: 399 L 399
L
Sbjct: 293 L 293
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 143/328 (43%), Gaps = 40/328 (12%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI-------HHFGNPRFELIRH 170
+LVTGGAG++GSH V L++ G +V DN D++ HH +L
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 73
Query: 171 DVVEPILLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 227
+E + E +D + H A + P++ N++GT+ +L L ++ ++F+ +
Sbjct: 74 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 133
Query: 228 STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA--RI 285
S++ VYGD + P P+G + Y K E + D + + A R
Sbjct: 134 SSATVYGDATRFPNMIPIPEEC-PLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRY 192
Query: 286 FNTYG--PRMCI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQTRSFQFVS 330
FN G P I +D + N ++AQ R+E L ++G DG R + V
Sbjct: 193 FNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVV 252
Query: 331 DLVEGLIRLME-----GDHVG---PFNLGNPGEFTMLELAEVVQEI--IDRNARIEFRPN 380
DL +G I ++ ++ G +NLG+ T+ E+ + ID ++ R
Sbjct: 253 DLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRA 312
Query: 381 TEDDPHKRKPDITKAKQLLGWEPRVTLR 408
+ KPD +AK+ L W+ + +
Sbjct: 313 GDVLNLTAKPD--RAKRELKWQTELQVE 338
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 136/316 (43%), Gaps = 37/316 (11%)
Query: 105 GKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR 164
G VP G +RIL+TGGAG +GS+L++ + +G ++V+DN+ TGK++ L G
Sbjct: 13 GLVPRG---SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAG--- 66
Query: 165 FELIRHDVVEPILLEVDQIYHLACPASPVH----YKFNP---VKTIKTNVVGTLNMLGLA 217
+I V + LLE + + P VH YK +P + TNV G++N+ A
Sbjct: 67 LSVIEGSVTDAGLLE--RAFDSFKPTHVVHSAAAYK-DPDDWAEDAATNVQGSINVAKAA 123
Query: 218 KRVGARFLLT-STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL 276
+ G + LL T+ YG P P +P + Y K E M
Sbjct: 124 SKAGVKRLLNFQTALCYGRPATVPIPID-----SPTAPFTSYGISKTAGEAFLMMSD--- 175
Query: 277 GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD-LVEG 335
+ R+ N GPR+ I G + + + + L+ D R F +SD L
Sbjct: 176 -VPVVSLRLANVTGPRLAI--GPIPTFY--KRLKAGQKCFCSD--TVRDFLDMSDFLAIA 228
Query: 336 LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIE---FRPNTEDDPHKRKPDI 392
+ L EG G FN+ ++ E+ +VV + + P +D P D
Sbjct: 229 DLSLQEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVL-DP 287
Query: 393 TKAKQLLGWEPRVTLR 408
+K + GW+ +V +
Sbjct: 288 SKTETEFGWKAKVDFK 303
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 18/290 (6%)
Query: 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE 174
SL+I VTGG GF+G ++V+ + + G++ I++ K I+ + + D++
Sbjct: 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA---INDYEYRVSDYTLEDLIN 58
Query: 175 PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVY 233
L +VD + HLA + N + T N+ + + ST Y
Sbjct: 59 Q-LNDVDAVVHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAY 113
Query: 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM 293
D P W Y K E + Y R G+ + R + YG
Sbjct: 114 SDETSLP-----WNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNE 168
Query: 294 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV-GPFNLGN 352
+ ++ F QA E LT++ + R F + D + +I ++ + V G FN+G+
Sbjct: 169 --KNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTFNIGS 226
Query: 353 PGEFTMLELAEVVQEII-DRNARIEFRPNTEDDPHKRKPDITKAKQLLGW 401
T E+A + +++ + PN + H D +KAK+LL +
Sbjct: 227 GDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYXDSSKAKELLDF 276
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 142/349 (40%), Gaps = 68/349 (19%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVV----DNYFTGKKDNLI-----HHFGNPRF---E 166
L+TG G GS+L + L+++G V + ++ TG+ ++L H GN + +
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGD 87
Query: 167 LIRHDVVEPILLEVD--QIYHLACPASPVHYKFNPVK-TIKTNVVGTLNMLGLAKRVG-- 221
L + I+ EV +IY+L S V F+ + T + VGTL +L K G
Sbjct: 88 LTDSTCLVKIINEVKPTEIYNLGAQ-SHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 146
Query: 222 --ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE 279
+F STSE+YG + PQ ET P RS Y K A + +++ +
Sbjct: 147 NSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAYNLF 201
Query: 280 ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---------GDGKQTRSFQFVS 330
A +FN PR +NFV + + + +Y G+ R +
Sbjct: 202 AVNGILFNHESPRRG-------ANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAK 254
Query: 331 DLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAE---------VVQEIIDRN--ARIE--- 376
D VE + +++ D F + ++ E E +V E + N R +
Sbjct: 255 DYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETG 314
Query: 377 ----------FRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415
+RP D + D TKAKQ L W+PRV + + MV
Sbjct: 315 KVHVTVDLKYYRPTEVD---FLQGDCTKAKQKLNWKPRVAFDELVREMV 360
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 124/318 (38%), Gaps = 40/318 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+ + G G VGS + +L RGD +V+ +D L L+ V
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRT-----RDEL---------NLLDSRAVHDF 50
Query: 177 LLE--VDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
+DQ+Y A V P I N++ N++ A + + L +S +
Sbjct: 51 FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 233 YGDPLQHPQAET--YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
Y + P AE+ G + P Y K L Y+R G + R N YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 291 PRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
P + V+ + A A + + V+G G R F V D+ I +ME
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 344 H----------VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDIT 393
H + N+G + T+ ELA+ + +++ R+ F + D ++ D+T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 394 KAKQLLGWEPRVTLRKGL 411
+ Q LGW ++L GL
Sbjct: 289 RLHQ-LGWYHEISLEAGL 305
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 123/318 (38%), Gaps = 40/318 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+ + G G VGS + +L RGD +V+ +D L L+ V
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRT-----RDEL---------NLLDSRAVHDF 50
Query: 177 LLE--VDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
+DQ+Y A V P I N++ N++ A + + L +S +
Sbjct: 51 FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 233 YGDPLQHPQAET--YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
Y + P AE+ G + P Y K L Y+R G + R N YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 291 PRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
P + V+ + A A + V+G G R F V D+ I +ME
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 344 H----------VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDIT 393
H + N+G + T+ ELA+ + +++ R+ F + D ++ D+T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 394 KAKQLLGWEPRVTLRKGL 411
+ Q LGW ++L GL
Sbjct: 289 RLHQ-LGWYHEISLEAGL 305
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 122/318 (38%), Gaps = 40/318 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+ + G G VGS + +L RGD +V+ +D L L+ V
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRT-----RDEL---------NLLDSRAVHDF 50
Query: 177 LLE--VDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
+DQ+Y A V P I N++ N++ A + + L S +
Sbjct: 51 FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGASCI 110
Query: 233 YGDPLQHPQAET--YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
Y + P AE+ G + P Y K L Y+R G + R N YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 291 PRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
P + V+ + A A + V+G G R F V D+ I +ME
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 344 H----------VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDIT 393
H + N+G + T+ ELA+ + +++ R+ F + D ++ D+T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 394 KAKQLLGWEPRVTLRKGL 411
+ Q LGW ++L GL
Sbjct: 289 RLHQ-LGWYHEISLEAGL 305
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 133/341 (39%), Gaps = 61/341 (17%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
ILVTGGAG++GSH L+ G V++ DN K++ + R E I P
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIA------RIEKITGKT--PAF 59
Query: 178 LEVD--------QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLG------------LA 217
E D +I+ + +H F +K + +V + +
Sbjct: 60 HETDVSDERALARIFDAHPITAAIH--FAALKAVGESVAKPIEYYRNNLDSLLSLLRVMR 117
Query: 218 KRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
+R R + +S++ VYG P + P ET+ P+ + Y + K AE + D
Sbjct: 118 ERAVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVE-AAD 171
Query: 278 IEARIA--RIFNTYGPR---MCIDDGRVVSN----FVAQAL--RKEPLTVYG------DG 320
R+A R FN G + +D + N +VAQ + E L V+G DG
Sbjct: 172 PSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDG 231
Query: 321 KQTRSFQFVSDLVEGLIRLMEG----DHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIE 376
R + V DL G I ++ D NLG +++LE+ ++ R E
Sbjct: 232 TGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYE 291
Query: 377 FRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417
D + + A + +GW+ L + M AD
Sbjct: 292 LVARRPGDVAECYANPAAAAETIGWKAERDLER----MCAD 328
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 123/318 (38%), Gaps = 40/318 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+ + G G VGS + +L RGD +V+ +D L L+ V
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRT-----RDEL---------NLLDSRAVHDF 50
Query: 177 LLE--VDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
+DQ+Y A V P I N++ N++ A + + L +S +
Sbjct: 51 FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 233 YGDPLQHPQAET--YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
Y + P AE+ G + P Y + L Y+R G + R N YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEP--TNEPYAIARIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 291 PRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
P + V+ + A A + V+G G R F V D+ I +ME
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 344 H----------VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDIT 393
H + N+G + T+ ELA+ + +++ R+ F + D ++ D+T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 394 KAKQLLGWEPRVTLRKGL 411
+ Q LGW ++L GL
Sbjct: 289 RLHQ-LGWYHEISLEAGL 305
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 123/318 (38%), Gaps = 40/318 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+ + G G VGS + +L RGD +V+ +D L L+ V
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRT-----RDEL---------NLLDSRAVHDF 50
Query: 177 LLE--VDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
+DQ+Y A V P I N++ N++ A + + L +S +
Sbjct: 51 FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 233 YGDPLQHPQAET--YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
Y + P AE+ G + P Y K L Y+R G + R N YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 291 PRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
P + V+ + A A + V+G G R F V D+ I +ME
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 344 H----------VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDIT 393
H + N+G + T+ +LA+ + +++ R+ F + D ++ D+T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 394 KAKQLLGWEPRVTLRKGL 411
+ Q LGW ++L GL
Sbjct: 289 RLHQ-LGWYHEISLEAGL 305
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 138/340 (40%), Gaps = 66/340 (19%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSV-----------------IVVDNYFTGKKDNLIHHFG 161
L+TG G GS+L + L+ +G V I +D + K +H+
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYAD 91
Query: 162 NPRFELIRH--DVVEPILLEVDQIYHLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAK 218
+R DV++P D++Y+LA S V F P T G L +L +
Sbjct: 92 LTDASSLRRWIDVIKP-----DEVYNLAA-QSHVAVSFEIPDYTADVVATGALRLLEAVR 145
Query: 219 R------VGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY 272
++ +SE++G PQ+ET P RS Y K A T++Y
Sbjct: 146 SHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET-----TPFHPRSPYAASKCAAHWYTVNY 199
Query: 273 HRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRK---------EPLTVYGDGKQT 323
G+ A +FN PR NFV + + + + G+ + +
Sbjct: 200 REAYGLFACNGILFNHESPRRG-------ENFVTRKITRALGRIKVGLQTKLFLGNLQAS 252
Query: 324 RSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEV--------VQEIIDRNARI 375
R + F D VE + +++ + + + T+ E +V ++ ++ + R
Sbjct: 253 RDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRY 312
Query: 376 EFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415
FRP D+ + D +KAK++LGW+P+V K + +MV
Sbjct: 313 -FRPAEVDN---LQGDASKAKEVLGWKPQVGFEKLVKMMV 348
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 122/318 (38%), Gaps = 40/318 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+ + G G VGS + +L RGD +V+ +D L L+ V
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRT-----RDEL---------NLLDSRAVHDF 50
Query: 177 LLE--VDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
+DQ+Y A V P I N++ N++ A + + L +S +
Sbjct: 51 FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 233 YGDPLQHPQAET--YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
Y + P AE+ G + P K L Y+R G + R N YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEPTNEPEAI--AKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 291 PRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
P + V+ + A A + V+G G R F V D+ I +ME
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 344 H----------VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDIT 393
H + N+G + T+ ELA+ + +++ R+ F + D ++ D+T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 394 KAKQLLGWEPRVTLRKGL 411
+ Q LGW ++L GL
Sbjct: 289 RLHQ-LGWYHEISLEAGL 305
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 116/252 (46%), Gaps = 24/252 (9%)
Query: 182 QIYHLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQ 238
++Y+LA S V +N PV T + +G ++L ++ RF STSE++G
Sbjct: 89 EVYNLAAQ-SFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQA 147
Query: 239 HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID-D 297
Q E P RS Y K +T++Y G+ A +FN P I+
Sbjct: 148 ERQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFV 202
Query: 298 GRVVSNFVAQ-ALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
R V++ VA+ L K+ G+ R + F D VE + +++ D + +
Sbjct: 203 TRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTT 262
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKP---DI-----TKAKQLLGWEPRVTLR 408
T+ ++ ++ E + +++R + DP +P D+ KA+++LGW+PR +L
Sbjct: 263 TVRDMCQIAFEHVG----LDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLD 318
Query: 409 KGLPLMV-ADFR 419
+ + +MV AD R
Sbjct: 319 ELIRMMVEADLR 330
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 147/357 (41%), Gaps = 75/357 (21%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRG--------DSVIVVDNYFTGKKDNLIH-HFGNPR-FE 166
R+ VTG GF GS L L + G D+ V + + ++L+ H G+ R FE
Sbjct: 11 RVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIGDIRDFE 70
Query: 167 LIRHDVVEPILLEVDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARF 224
+R + E + + ++H+A P + Y+ P+KT TNV+GT+++L K+VG +
Sbjct: 71 KLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLLETVKQVGNIKA 126
Query: 225 LLTSTSEVYGDPLQHPQAETYWG--NVNPIGVRSCYDEGKRTAETLTMDYHRGL------ 276
++ TS+ D E WG P+G Y K AE + +
Sbjct: 127 VVNITSDKCYD-----NREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPANY 181
Query: 277 ---GIEARIARIFNTYG------PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327
G+ R N G R+ D R N Q + + P ++ R +Q
Sbjct: 182 EQHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFEN-NQQVIIRNPYSI-------RPWQ 233
Query: 328 FVSDLVEGLI-----------RLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARI- 375
V + + G I + EG + GP + E A+ V+ I+D+ +
Sbjct: 234 HVLEPLSGYIVVAQRLYTEGAKFSEGWNFGPRD----------EDAKTVEFIVDKMVTLW 283
Query: 376 ----EFRPNTEDDPHKR---KPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFGD 425
+ + E+ PH+ K D +KA LGW PR L + L +V + I G+
Sbjct: 284 GDDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHKAWIRGE 340
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 141/344 (40%), Gaps = 53/344 (15%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVE- 174
R L+TG G G++L L+++G V D + G ++I D++E
Sbjct: 5 RALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEF 64
Query: 175 -PIL-----LEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRV--GARFL 225
I+ ++ D++Y+LA S V F P+ T + + +G L +L + V +F
Sbjct: 65 SNIIRTIEKVQPDEVYNLAA-QSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFY 123
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
STSE++G + PQ E P RS Y K +T++Y + A +
Sbjct: 124 QASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGIL 178
Query: 286 FNTYGPRMCIDDGRVVSNFVAQALRK-----EPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340
FN P I+ V+ + +L + + V G+ R + + + VE + +M
Sbjct: 179 FNHESPLRGIE---FVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMM 235
Query: 341 EGDHVGPFNLGNPGEFTMLELAEVVQEI----------------IDRN--------ARIE 376
+ + + T+ E E +I IDRN +
Sbjct: 236 QQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEF 295
Query: 377 FRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV-ADFR 419
FRP E D P+ KA + LGW+PR T + + +M+ AD +
Sbjct: 296 FRP-AEVDILVGNPE--KAMKKLGWKPRTTFDELVEIMMEADLK 336
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 137/341 (40%), Gaps = 45/341 (13%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVI-------VVDNYFTGKK--DNLIHHFGNPRFEL 167
R+ VTG GF G L L G +V V + F + D + G+ R
Sbjct: 11 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR--- 67
Query: 168 IRHDVVEPIL-LEVDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RF 224
++ ++E I + + ++H+A P + Y PV+T TNV+GT+ +L + VG +
Sbjct: 68 DQNKLLESIREFQPEIVFHMAAQPLVRLSYS-EPVETYSTNVMGTVYLLEAIRHVGGVKA 126
Query: 225 LLTSTSEVYGDPLQHPQAETYWG--NVNPIGVRSCYDEGKRTAETLTMDYHRGL------ 276
++ TS+ D E WG +G Y K AE +T Y
Sbjct: 127 VVNITSDKCYD-----NKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANY 181
Query: 277 ---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333
G R N G D R+V + + + +P+ + + R +Q V + +
Sbjct: 182 GQHGTAVATVRAGNVIGGGDWALD-RIVPDILRAFEQSQPVIIR-NPHAIRPWQHVLEPL 239
Query: 334 EGLIRLME------GDHVGPFNLGNPGEFTMLELAEVVQEIID---RNARIEFRPNTE-D 383
G + L + ++ +N G P + + +V++++ A + N
Sbjct: 240 SGYLLLAQKLYTDGAEYAEGWNFG-PNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPH 298
Query: 384 DPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFG 424
+ H K D +KAK LGW PR L L +V ++ + G
Sbjct: 299 EAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 339
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 117/283 (41%), Gaps = 42/283 (14%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKD-NLIHHFGNPRFELIRHDVVEP 175
I+VTGGAGF+GS++V L D+G ++VVDN G K NL+ N + + D +
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKEDFLIQ 106
Query: 176 ILL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230
I+ +V+ I+H +S + + + N + +L FL S++
Sbjct: 107 IMAGEEFGDVEAIFHEGACSSTTEW--DGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 164
Query: 231 EVYGD-PLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288
YG ++ Y +N G + +DE R + L + +G R FN
Sbjct: 165 ATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVR--QILPEANSQIVGF-----RYFNV 217
Query: 289 YGPRMCIDDGRVVSNFVAQALRKE------PLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
YGPR G + S VA L + P G R F +V D+ + + +E
Sbjct: 218 YGPREG-HKGSMAS--VAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLEN 274
Query: 343 DHVGPFNLGNPGEFTMLELAEVVQEIID------RNARIEFRP 379
G FNLG AE Q + D + +IE+ P
Sbjct: 275 GVSGIFNLGTG-------RAESFQAVADATLAYHKKGQIEYIP 310
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 118/289 (40%), Gaps = 54/289 (18%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKD-NLIHHFGNPRFELIRHDVVEP 175
I+VTGGAGF+GS++V L D+G ++VVDN G K NL+ N + + D +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKEDFLIQ 59
Query: 176 ILL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230
I+ +V+ I+H +S + + + N + +L FL S++
Sbjct: 60 IMAGEEFGDVEAIFHEGAXSSTTEW--DGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 231 EVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA--- 283
YG D ++ + E P+ V ++ L +Y R + EA
Sbjct: 118 ATYGGRTSDFIESREYE------KPLNVYGY-------SKFLFDEYVRQILPEANSQIVG 164
Query: 284 -RIFNTYGPRMCIDDGRVVSNFVAQALRKE------PLTVYGDGKQTRSFQFVSDLVEGL 336
R FN YGPR G + S VA L + P G R F +V D+ +
Sbjct: 165 FRYFNVYGPREG-HKGSMAS--VAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVN 221
Query: 337 IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIID------RNARIEFRP 379
+ +E G FNLG AE Q + D + +IE+ P
Sbjct: 222 LWFLENGVSGIFNLGTG-------RAESFQAVADATLAYHKKGQIEYIP 263
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/353 (22%), Positives = 132/353 (37%), Gaps = 72/353 (20%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH----------HFGNPRFE 166
R++V GG G+ G L + V +VDN D+ + H R++
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72
Query: 167 LIRHDVVEPILLEVDQIYHLAC------PASPVHY------------KFNPVKTIKTNVV 208
+ +E + ++ LA P S VH+ + V T NV+
Sbjct: 73 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 132
Query: 209 GTLNMLGLAKRVGARFLLTSTSEV--YGDP-------------------LQHPQAETYWG 247
GTLN+L K G L + YG P L +P+ + +
Sbjct: 133 GTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 192
Query: 248 NVNPIG-----VRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDD--G 298
+++ + +C G R D ++G+ G++ + R+ D G
Sbjct: 193 HLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247
Query: 299 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-IRLMEGDHVGPFNLGN--PGE 355
++ F QA PLTVYG G QTR + + D V+ + I + G F + N +
Sbjct: 248 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQ 307
Query: 356 FTMLELAEVVQEI-----IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
F++ ELA +V + +D P E + H TK + LG EP
Sbjct: 308 FSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEP 359
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 132/353 (37%), Gaps = 72/353 (20%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH----------HFGNPRFE 166
R++V GG G+ G L + V +VDN D+ + H R++
Sbjct: 3 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 62
Query: 167 LIRHDVVEPILLEVDQIYHLAC------PASPVHY------------KFNPVKTIKTNVV 208
+ +E + ++ LA P S VH+ + V T NV+
Sbjct: 63 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 122
Query: 209 GTLNMLGLAKRVGARFLLTS--TSEVYGDP-------------------LQHPQAETYWG 247
GTLN+L K G L T YG P L +P+ + +
Sbjct: 123 GTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 182
Query: 248 NVNPIG-----VRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDD--G 298
+++ + +C G R D ++G+ G++ + R+ D G
Sbjct: 183 HLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 237
Query: 299 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-IRLMEGDHVGPFNLGN--PGE 355
++ F QA PLTVYG G QTR + + D V+ + I + G F + N +
Sbjct: 238 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQ 297
Query: 356 FTMLELAEVVQEI-----IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
F++ ELA +V + +D P E + H TK + LG EP
Sbjct: 298 FSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEP 349
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 132/353 (37%), Gaps = 72/353 (20%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH----------HFGNPRFE 166
R++V GG G+ G L + V +VDN D+ + H R++
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72
Query: 167 LIRHDVVEPILLEVDQIYHLAC------PASPVHY------------KFNPVKTIKTNVV 208
+ +E + ++ LA P S VH+ + V T NV+
Sbjct: 73 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 132
Query: 209 GTLNMLGLAKRVGARFLLTS--TSEVYGDP-------------------LQHPQAETYWG 247
GTLN+L K G L T YG P L +P+ + +
Sbjct: 133 GTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 192
Query: 248 NVNPIG-----VRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDD--G 298
+++ + +C G R D ++G+ G++ + R+ D G
Sbjct: 193 HLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247
Query: 299 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-IRLMEGDHVGPFNLGN--PGE 355
++ F QA PLTVYG G QTR + + D V+ + I + G F + N +
Sbjct: 248 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQ 307
Query: 356 FTMLELAEVVQEI-----IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
F++ ELA +V + +D P E + H TK + LG EP
Sbjct: 308 FSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEP 359
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSV-IVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
IL+TGG G G V +++D ++ I+V + K+ + F +PR DV
Sbjct: 24 ILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLE 83
Query: 173 -VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231
+ L VD H A ++NP++ IKTN++G N++ + ++ +++
Sbjct: 84 RLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD 143
Query: 232 VYGDPLQ 238
+P+
Sbjct: 144 KAANPIN 150
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 98/237 (41%), Gaps = 25/237 (10%)
Query: 118 ILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYF---TGKKDNLIHHFGNPRFELIRHDVV 173
ILVTG +G +G+ LV L ++ G ++ + TG + N R E+ R V
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSN-RDEIDR--AV 58
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLLTSTSE 231
E +D I+HLA S K +P K N+ GT N+L AK RV + ++ ST
Sbjct: 59 EK--YSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIG 114
Query: 232 VYGDPLQHPQAETYWGNVNPIGV---RSCYDEGKRTAETLTMDYHRGLGIEARIARI--F 286
V+G ET V I + R+ Y K AE L Y+ G++ R R
Sbjct: 115 VFG-------PETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
Query: 287 NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
+Y A+++E Y + ++ D ++ L+ L E D
Sbjct: 168 ISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEAD 224
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 84/230 (36%), Gaps = 47/230 (20%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH---DV 172
+ I++TG GFVG +L L D HH FE+ R +
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTD-----------------HHI----FEVHRQTKEEE 39
Query: 173 VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232
+E LL+ D I HLA P H K + + + + L++L + A L +S
Sbjct: 40 LESALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPAILLSSSIQAT 98
Query: 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292
+P Y E K E L +Y G I R N +G
Sbjct: 99 QDNP---------------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKW 137
Query: 293 MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
+ V++ F + R E + V D + +V D+V + R +EG
Sbjct: 138 CKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEG 186
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 25/165 (15%)
Query: 206 NVVGTLNMLGLAKRVGARFLLTSTSEVY-GDPLQHPQAETYWGNVNPIGVRSCYDEGKRT 264
N +G N+ ++ VGA+ + ST V+ GD P+ + N PI + Y K
Sbjct: 83 NAIGARNVAVASQLVGAKLVYISTDYVFQGD---RPEGYDEFHNPAPINI---YGASKYA 136
Query: 265 AETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDG 320
E + H I R + ++ YG +NFV +R +E ++V D
Sbjct: 137 GEQFVKELHNKYFI-VRTSWLYGKYG-----------NNFVKTMIRLGKEREEISVVAD- 183
Query: 321 KQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVV 365
Q S +V+DL + +L+ G +++ N G + E A+ +
Sbjct: 184 -QIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKI 227
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 83/228 (36%), Gaps = 47/228 (20%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH---DVVE 174
I++TG GFVG +L L D HH FE+ R + +E
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTD-----------------HHI----FEVHRQTKEEELE 41
Query: 175 PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234
LL+ D I HLA P H K + + + + L++L + A L +S
Sbjct: 42 SALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPAILLSSSIQATQD 100
Query: 235 DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC 294
+P Y E K E L +Y G I R N +G
Sbjct: 101 NP---------------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCK 139
Query: 295 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
+ V++ F + R E + V D + +V D+V + R +EG
Sbjct: 140 PNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEG 186
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 98/237 (41%), Gaps = 25/237 (10%)
Query: 118 ILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYF---TGKKDNLIHHFGNPRFELIRHDVV 173
ILVTG +G +G+ LV L ++ G ++ + TG + N R E+ R V
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSN-RDEIDR--AV 58
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLLTSTSE 231
E +D I+HLA S K +P K N+ GT N+L AK RV + ++ ST
Sbjct: 59 EK--YSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIG 114
Query: 232 VYGDPLQHPQAETYWGNVNPIGV---RSCYDEGKRTAETLTMDYHRGLGIEARIARI--F 286
V+G ET V I + R+ + K AE L Y+ G++ R R
Sbjct: 115 VFG-------PETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
Query: 287 NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
+Y A+++E Y + ++ D ++ L+ L E D
Sbjct: 168 ISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEAD 224
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 105/282 (37%), Gaps = 50/282 (17%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV 172
R S ILVTG AG VG +V L +G +V D +G + L
Sbjct: 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVG------SLEDGQA 70
Query: 173 VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE 231
+ ++ V + HL S + + NV GT +L A G RF+ S+ E
Sbjct: 71 LSDAIMGVSAVLHLGAFMSWAPADRD--RMFAVNVEGTRRLLDAASAAGVRRFVFASSGE 128
Query: 232 VYGD--PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
VY + P P E + P+ S Y K E L + R +E I R +T
Sbjct: 129 VYPENRPEFLPVTEDH-----PLCPNSPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQ 183
Query: 290 GPRMCIDDGRVVS--------------NF----VAQALRK----EPLTVYGDGKQTRSFQ 327
+D+ S NF +A+ L+ EP + + R F+
Sbjct: 184 DATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPFR 243
Query: 328 F----VSDLVEGLIRLMEGDHV----GPFNLG--NPGEFTML 359
D+V G+ L+ DH G FNLG P +F L
Sbjct: 244 MHITDTRDMVAGI--LLALDHPEAAGGTFNLGADEPADFAAL 283
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 120 VTGGAGFVGSHLVDRLMDRGDSV--IVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
V GG GFV S LV L+ +G +V V D K +L+ ++ R D+ + +
Sbjct: 14 VVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELS 73
Query: 178 LE-----VDQIYHLACPASPVHYKFNPVKT--IKTNVVGTLNMLGLAKRVGA--RFLLTS 228
E D ++H+ A+PVH+ + IK + G +N++ R + R +LTS
Sbjct: 74 FEAPIAGCDFVFHV---ATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTS 130
Query: 229 TS 230
++
Sbjct: 131 SA 132
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSV 142
+S + VTG +GF+GS LV RL++RG +V
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTV 32
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 103/254 (40%), Gaps = 46/254 (18%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSV---IVVD-------NYFT---GKKDNLIHHFGNP 163
R+ VTGG GF+GS ++ L++ G SV I D ++ T G + L HF N
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKL--HFFNA 60
Query: 164 RFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTI--KTNVVGTLNML--GLAKR 219
+L D + I+H ASP+ + + + I K V G L +L + +
Sbjct: 61 --DLSNPDSFAAAIEGCVGIFH---TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSK 115
Query: 220 VGARFLLTSTSEV--YGDPLQHPQAETYWGNVN------PIGVRSCYDEGKRTAETLTMD 271
RF+ TS+ + + E+ W +V+ P G Y K AE ++
Sbjct: 116 TVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWN--YAVSKTLAEKAVLE 173
Query: 272 YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF--- 328
+ GI+ + P + GR V + ++ K + V G +Q +F
Sbjct: 174 FGEQNGID-----VVTLILPFIV---GRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMV 225
Query: 329 -VSDLVEGLIRLME 341
V D+ I L+E
Sbjct: 226 HVDDVARAHIYLLE 239
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP---RFE------LI 168
+LVTG GFV SH+V++L++ G V K NL + RFE ++
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARS-ASKLANLQKRWDAKYPGRFETAVVEDML 72
Query: 169 RHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLL 226
+ + ++ + H+A S K++ V + + GTLN L A + RF+L
Sbjct: 73 KQGAYDEVIKGAAGVAHIASVVS-FSNKYDEV--VTPAIGGTLNALRAAAATPSVKRFVL 129
Query: 227 TSTS 230
TS++
Sbjct: 130 TSST 133
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 96/259 (37%), Gaps = 55/259 (21%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRG-------------DSVIVVDNYFTGKKDNLIHHFGNP 163
+IL+TG G +G + +L + +V+ V+ +F KK N++
Sbjct: 14 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVV------ 67
Query: 164 RFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR 223
H V+ + ++ Y LA K N +G N+ A VGA
Sbjct: 68 -INCAAHTAVD----KCEEQYDLA---------------YKINAIGPKNLAAAAYSVGAE 107
Query: 224 FLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA 283
+ ST V+ + P E + VNP +S Y + K E ++ + L + I
Sbjct: 108 IVQISTDYVFDGEAKEPITE--FDEVNP---QSAYGKTKLEGE----NFVKALNPKYYIV 158
Query: 284 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
R YG D V + + L V D Q + DL ++++++
Sbjct: 159 RTAWLYG-----DGNNFVKTXINLGKTHDELKVVHD--QVGTPTSTVDLARVVLKVIDEK 211
Query: 344 HVGPFNLGNPGEFTMLELA 362
+ G F+ G + + A
Sbjct: 212 NYGTFHCTCKGICSWYDFA 230
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 37/207 (17%)
Query: 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLM---DRGDSVIVVDN---YFTGKKDNLIHHFG 161
PLG L+TG GF+G++L++ L R I DN + NL +F
Sbjct: 149 PLG------NTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFS 202
Query: 162 NPRFELIRHDV---------VEPILL--EVDQIYHLACPASPVHYKFNPVKTIKTNVVGT 210
E++ ++ ++ ++L +D I H A H+ + + K NV GT
Sbjct: 203 EETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIH--AGARTDHFG-DDDEFEKVNVQGT 259
Query: 211 LNMLGLAKRVGARFLLTSTSEV--YGD----PLQHPQAETYWGNVNPIGVRSCYDEGKRT 264
++++ LA++ AR + ST V Y D + +A+ Y G + + S Y K
Sbjct: 260 VDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQL----LTSPYTRSKFY 315
Query: 265 AETLTMDYHRGLGIEARIARIFNTYGP 291
+E ++ G++ RI R+ N P
Sbjct: 316 SELKVLEAVNN-GLDGRIVRVGNLTSP 341
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP---RFE------LI 168
+LVTG GFV SH+V++L++ G V K NL + RFE +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARS-ASKLANLQKRWDAKYPGRFETAVVEDXL 72
Query: 169 RHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLL 226
+ + ++ + H+A S K++ V + + GTLN L A + RF+L
Sbjct: 73 KQGAYDEVIKGAAGVAHIASVVS-FSNKYDEV--VTPAIGGTLNALRAAAATPSVKRFVL 129
Query: 227 TSTS 230
TS++
Sbjct: 130 TSST 133
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 123 GAGFVGSHLVDRLMDRGDSVIVVD-------NYFTGKKDN--LIHHFGNPRFELIRHDVV 173
GAGF GS L +RL G V++VD N + D LIH +G F DV
Sbjct: 36 GAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVF 95
Query: 174 E 174
E
Sbjct: 96 E 96
>pdb|3UU9|A Chain A, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
pdb|3UU9|B Chain B, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
Length = 520
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 237 LQHPQAETYWGNVNPIGVRSCYD 259
LQHP+AET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|3SCE|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3SCE|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3S7W|A Chain A, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3S7W|B Chain B, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3OWM|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
pdb|3OWM|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
Length = 519
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 237 LQHPQAETYWGNVNPIGVRSCYD 259
LQHP+AET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|2OT4|A Chain A, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
pdb|2OT4|B Chain B, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
Length = 525
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 237 LQHPQAETYWGNVNPIGVRSCYD 259
LQHP+AET+WG+V+ +C D
Sbjct: 359 LQHPEAETFWGSVHERNGVACAD 381
>pdb|3RKH|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
pdb|3RKH|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
Length = 520
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 237 LQHPQAETYWGNVNPIGVRSCYD 259
LQHP+AET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|3F29|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|3F29|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|2ZO5|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|2ZO5|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|3D1I|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3D1I|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3GM6|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3GM6|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3FO3|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3FO3|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3MMO|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3MMO|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3LG1|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LG1|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LGQ|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
pdb|3LGQ|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
Length = 525
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 237 LQHPQAETYWGNVNPIGVRSCYD 259
LQHP+AET+WG+V+ +C D
Sbjct: 359 LQHPEAETFWGSVHERNGVACAD 381
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY---FTGKKDNLIHHFGNPRFELIRHDVV 173
R+LVTG AG +G + +RL + + + D G + + + +L + V
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECV------QCDLADANAV 58
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEV 232
++ D I HL V F + ++ N++G N+ A+ G R + S++
Sbjct: 59 NAMVAGCDGIVHLG--GISVEKPFE--QILQGNIIGLYNLYEAARAHGQPRIVFASSNHT 114
Query: 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
G +PQ E +V P Y K E L Y G E + RI
Sbjct: 115 IG---YYPQTERLGPDV-PARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
>pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From
Pseudomonas Sp. Lb400
Length = 277
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVD 146
++ K +L+TGGA +G LVDR + G V V+D
Sbjct: 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLD 36
>pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTD|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTE|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTE|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTX|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
pdb|2DTX|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
Length = 264
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-- 175
++VTG + +G + +R +D G VI D IH G +++ I DV P
Sbjct: 11 VIVTGASMGIGRAIAERFVDEGSKVI----------DLSIHDPGEAKYDHIECDVTNPDQ 60
Query: 176 ILLEVDQIY 184
+ +D I+
Sbjct: 61 VKASIDHIF 69
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVD 146
R+LV GG GF+G+ L L RG V +V
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVS 31
>pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
pdb|2ZK7|B Chain B, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
Length = 257
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-- 175
++VTG + +G + +R +D G VI D IH G +++ I DV P
Sbjct: 18 VIVTGASMGIGRAIAERFVDEGSKVI----------DLSIHDPGEAKYDHIECDVTNPDQ 67
Query: 176 ILLEVDQIY 184
+ +D I+
Sbjct: 68 VKASIDHIF 76
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+LVTG AG VGS + L V + D G + H +L V +
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEA---HEEIVACDLADAQAVHDL 60
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYG 234
+ + D I HL V +N + ++ N++G N+ A+ +G R + S++ G
Sbjct: 61 VKDCDGIIHLG--GVSVERPWNDI--LQANIIGAYNLYEAARNLGKPRIVFASSNHTIG 115
>pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y93|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y99|A Chain A, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|2Y99|B Chain B, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|3ZV3|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV3|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV4|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV4|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV5|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV5|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV6|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
pdb|3ZV6|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
Length = 281
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN 162
L+TGGA +G LVDR + G V V+D ++ + H GN
Sbjct: 9 LITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGN 52
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 42/227 (18%)
Query: 96 AEVQHVNAGGKVPLGLQRKSL------RILVTGGAGFVGSHLVDRLMDRGDSV---IVVD 146
+E+Q + + LG+ SL L+TG GF+G++L++ L + I D
Sbjct: 45 SELQKI-VXSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRAD 103
Query: 147 N---YFTGKKDNLIHHFGNPRFEL-------------IRHDVVEPILLEVDQIYHLACPA 190
N + NL +F E DVV P D I H A
Sbjct: 104 NEEIAWYKLXTNLNDYFSEETVEXXLSNIEVIVGDFECXDDVVLP--ENXDTIIHAG--A 159
Query: 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV--YGD----PLQHPQAET 244
H+ + + K NV GT++++ LA++ AR + ST V Y D + +A+
Sbjct: 160 RTDHFG-DDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADV 218
Query: 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGP 291
Y G + + S Y K +E ++ G++ RI R+ N P
Sbjct: 219 YKGQL----LTSPYTRSKFYSELKVLEAVNN-GLDGRIVRVGNLTSP 260
>pdb|1FZT|A Chain A, Solution Structure And Dynamics Of An Open B-Sheet,
Glycolytic Enzyme-Monomeric 23.7 Kda Phosphoglycerate
Mutase From Schizosaccharomyces Pombe
Length = 211
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 68 RQHQIANPAPLTTSETTHLSRRRVL--YEAAEVQHVNAGGKVPLGLQRKSLRILVTGGAG 125
R + IA P E+ + RVL Y++ V H+ G KV + SLR L+ G
Sbjct: 121 RSYDIAPP----NGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMDLEG 176
Query: 126 FVGSHLVDRLMDRGDSVI 143
G +V R + G ++
Sbjct: 177 LTGDQIVKRELATGVPIV 194
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 28/178 (15%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY---FTGKKDNLIHHFGNPRFELIRHDVV 173
R+LVTG AG +G + +RL + + + D G + + + +L + V
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECV------QCDLADANAV 58
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEV 232
++ D I HL V F + ++ N++G N+ A+ G R + S++
Sbjct: 59 NAMVAGCDGIVHLG--GISVEKPFE--QILQGNIIGLYNLYEAARAHGQPRIVFASSNHT 114
Query: 233 YGDPLQHPQAETYWGNVNP-----IGVRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
G +PQ E +V GV C+ E L Y G E + RI
Sbjct: 115 IG---YYPQTERLGPDVPARPDGLAGVSKCF------GENLARMYFDKFGQETALVRI 163
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 39/148 (26%)
Query: 118 ILVTGGAGFVGSHLVDRLMDR----GDSVIVV------------DNYFTGKKDNLIHHF- 160
+L+TG GF+G +LV L+ R G + +V + F L+ HF
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 161 --GNPRFELIRHDVVEPIL-----------LEVDQIYHLACP--ASPVHYKFNPVKTIKT 205
R E++ D EP L VD I A A P H F P
Sbjct: 136 ELAADRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHELFGP------ 189
Query: 206 NVVGTLNMLGLAKRVGAR-FLLTSTSEV 232
NV GT ++ +A + F ST++V
Sbjct: 190 NVAGTAELIRIALTTKLKPFTYVSTADV 217
>pdb|3ZF7|RR Chain r, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 374
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 310 RKEPLTVYGDGKQTRSFQ--FVSDLVE----GLIRLMEGDHVGPFNLGNPGEFTMLE 360
R+ P+ V D K TR+F+ F DL L+ L G HVG F + F L+
Sbjct: 203 RRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNLLHLAPGGHVGRFIIWTKSAFEKLD 259
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVV 145
K +I++ G +GFVGS L++ ++RG V V
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAV 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,051,211
Number of Sequences: 62578
Number of extensions: 562865
Number of successful extensions: 1557
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 123
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)