BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013226
(447 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/302 (62%), Positives = 232/302 (76%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 88 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 147
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 148 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 207
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+G RM ++
Sbjct: 208 EVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMN 267
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ E LTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 268 DGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEH 327
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F P +DDP +R+PDI KAK LLGWEP V L +GL +
Sbjct: 328 TILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQ 387
Query: 417 DF 418
F
Sbjct: 388 YF 389
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/306 (61%), Positives = 234/306 (76%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 91 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 150
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 151 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 210
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 211 EVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 270
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ E LTVYG G+QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 271 DGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEH 330
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
++++ A ++++++ I F +DDP +RKPDI KAK LLGWEP V L +GL +
Sbjct: 331 SIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIH 390
Query: 417 DFRHRI 422
FR +
Sbjct: 391 YFRKEL 396
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 157/315 (49%), Gaps = 22/315 (6%)
Query: 116 LRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNY-----FTGKKDNLIHHFGNPRFELIR 169
++ILVTG AGF+GSHL + L+ D+ +VI +D++ F+ K NL + RF I+
Sbjct: 1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIK 60
Query: 170 HDVVEP----ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--R 223
+++ +L VD I+HLA N + + L L A R +
Sbjct: 61 ENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQT 120
Query: 224 FLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA 283
F+ STS VYG+ T ++P GV K T E L Y + GI I
Sbjct: 121 FVFASTSSVYGEKQGKVSENTSLSPLSPYGVT------KLTGEKLCHVYKQSFGIPIVIL 174
Query: 284 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
R F YGPR D + Q L+++PLT++GDG+Q+R F ++SD V+G+ ++
Sbjct: 175 RFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKP 232
Query: 344 HV--GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGW 401
H+ N+G ++L++ ++++I R A + F +P DI+KAKQLL +
Sbjct: 233 HLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQLLHY 292
Query: 402 EPRVTLRKGLPLMVA 416
+P +L+ GL +A
Sbjct: 293 DPATSLKDGLTNEIA 307
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 135 bits (339), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 162/309 (52%), Gaps = 25/309 (8%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
ILVTGGAGF+GSH+VD+L++ VI++DN TG K+N+ NP+ E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 178 LE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGARFLLTST 229
E V+ + H A + + NPV NV+GT+N+L + ++ + +S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 230 SEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
VYG+P P E + PI S Y K E Y+R GIE I R N Y
Sbjct: 117 GAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVY 171
Query: 290 GPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG-LIRLMEGDHVGP 347
G R + V+S F+ + L+ + ++GDG QTR F +V D+ + L+ L + +
Sbjct: 172 GERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWKNEI-- 229
Query: 348 FNLGNPGEFTMLELAEVVQ-EIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT 406
N+G E ++ EL ++++ EI R I +P E + ++ DI KA+ LGW+P +
Sbjct: 230 VNIGTGKETSVNELFDIIKHEIGFRGEAIYDKP-REGEVYRIYLDIKKAES-LGWKPEID 287
Query: 407 LRKGLPLMV 415
L++G+ +V
Sbjct: 288 LKEGIKRVV 296
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 154/322 (47%), Gaps = 27/322 (8%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGD--------SVIVVDNY-FTGKKDNLIHHFGNPRFE 166
++ILVTGGAGF+GSH V L+ GD V VVD + G NL +PRF
Sbjct: 1 MKILVTGGAGFIGSHFVTSLIS-GDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFS 59
Query: 167 LIRHDVVEPILLEVDQIYH--LACPASPVHYKFNPVKT---IKTNVVGTLNMLGLAKR-- 219
+R D+ + L+E H +A A+ H + V + + +N+VGT +L A R
Sbjct: 60 FVRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHH 119
Query: 220 VGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE 279
+G RFL ST EVYG W +P+ S Y K ++ L + YH+ G++
Sbjct: 120 IG-RFLHVSTDEVYGS-----IDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMD 173
Query: 280 ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339
+ R N YGPR + +++ FV + L + VYGDG+ R + VSD GL
Sbjct: 174 VVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALA 231
Query: 340 MEGDHVGP-FNLGNPGEFTMLELAEVVQEIIDRNA-RIEFRPNTEDDPHKRKPDITKAKQ 397
+ G +++G E T LEL E++ E A RI F + + + D +K
Sbjct: 232 LGAGRAGEVYHIGGGWEATNLELTEILLEACGAPASRISFVTDRKGHDRRYSLDYSKIAG 291
Query: 398 LLGWEPRVTLRKGLPLMVADFR 419
LG+ PRV G+ VA +R
Sbjct: 292 ELGYRPRVDFTDGIAETVAWYR 313
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1055 PE=3 SV=1
Length = 326
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 162/319 (50%), Gaps = 32/319 (10%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVV-----DNYFT----GKKDNLIHHFGNPR 164
K ILVTG AGF+G HL LMD + + V+ +NY+ K++ ++ ++ N
Sbjct: 2 KYKNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYT 61
Query: 165 FELIRH----DVVEPIL-LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR 219
F + D+VE + E+D I HL A + NP IK+N +GTLN+ A+R
Sbjct: 62 FIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARR 121
Query: 220 VG-ARFLLTSTSEVYGDPLQHPQAETYWGNVN-PIGVRSCYDEGKRTAETLTMDYHRGLG 277
+ + S+S VYG + P +E V+ PI S Y KR+ E + YH G
Sbjct: 122 FDIEKVVYASSSSVYGGNRKIPFSED--DRVDKPI---SLYASTKRSNELMAHVYHHLYG 176
Query: 278 IEARIARIFNTYG----PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333
I+ R F YG P M F L + + VY G R F ++SD+V
Sbjct: 177 IKMIGLRFFTVYGEYGRPDMA------YFKFAKNILLGKEIEVYNYGNMERDFTYISDVV 230
Query: 334 EGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDI 392
+G++R ++ D FNLGN ++ E++++ +++ A+ +F P + D + D+
Sbjct: 231 DGILRAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGDVLRTYADL 290
Query: 393 TKAKQLLGWEPRVTLRKGL 411
+K+++LLG++P+VT+ +GL
Sbjct: 291 SKSEKLLGYKPKVTIEEGL 309
>sp|A2Z7B3|GME1_ORYSI GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica
GN=OsI_032456 PE=2 SV=1
Length = 378
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 141/307 (45%), Gaps = 13/307 (4%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
+ LRI +TG GF+GSH+ RL G +I D K +++ F L+ V+
Sbjct: 28 EKLRISITGAGGFIGSHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVM 84
Query: 174 EPILL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 228
+ L VD +++LA + + + N + N + + NML A+ G RF S
Sbjct: 85 DNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYAS 144
Query: 229 TSEVYGDPLQ-HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
++ +Y + Q + P + Y K E L Y + GIE R+ R N
Sbjct: 145 SACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHN 204
Query: 288 TYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH 344
YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + D
Sbjct: 205 IYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF 264
Query: 345 VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPR 404
P N+G+ +M E+AE++ DR I P E R D T K+ LGW P
Sbjct: 265 REPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPT 323
Query: 405 VTLRKGL 411
+ L+ GL
Sbjct: 324 MKLKDGL 330
>sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica
GN=GME-1 PE=1 SV=1
Length = 378
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 141/307 (45%), Gaps = 13/307 (4%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
+ LRI +TG GF+GSH+ RL G +I D K +++ F L+ V+
Sbjct: 28 EKLRISITGAGGFIGSHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVM 84
Query: 174 EPILL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 228
+ L VD +++LA + + + N + N + + NML A+ G RF S
Sbjct: 85 DNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYAS 144
Query: 229 TSEVYGDPLQ-HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
++ +Y + Q + P + Y K E L Y + GIE R+ R N
Sbjct: 145 SACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHN 204
Query: 288 TYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH 344
YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + D
Sbjct: 205 IYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF 264
Query: 345 VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPR 404
P N+G+ +M E+AE++ DR I P E R D T K+ LGW P
Sbjct: 265 REPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPT 323
Query: 405 VTLRKGL 411
+ L+ GL
Sbjct: 324 MKLKDGL 330
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 153/318 (48%), Gaps = 19/318 (5%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+R LVTG AGF+GS LVDRL+ G V+ +D+ +G+ +NL + +FE ++ D+V+
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVDA 60
Query: 176 IL------LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229
L + + I+HLA S +P NVVGT+ + A+ G R ++ ++
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHTS 120
Query: 230 S--EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
S VYG P +P +E P+ S Y GK E Y ++ N
Sbjct: 121 SGGSVYGTPPAYPTSEDM-----PVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAPAN 175
Query: 288 TYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG 346
YGPR + VV+ F L ++GDG TR + FV D+V+ +R G G
Sbjct: 176 VYGPRQDPHGEAGVVAIFSEALLAGRTTKIFGDGSDTRDYVFVDDVVDAFVR--AGGPAG 233
Query: 347 P---FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
FN+G E + EL + + EF P D + + D T+A+++LGW+P
Sbjct: 234 GGQRFNVGTGVETSTRELHTAIAGAVGAPDEPEFHPPRLGDLRRSRLDNTRAREVLGWQP 293
Query: 404 RVTLRKGLPLMVADFRHR 421
+V L +G+ V FR++
Sbjct: 294 QVALAEGIAKTVEFFRNK 311
>sp|Q2R1V8|GME2_ORYSJ GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica
GN=GME-2 PE=2 SV=2
Length = 371
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 142/311 (45%), Gaps = 21/311 (6%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
+ LRI +TG GF+ SH+ RL G +I D K +++ F L+ V+
Sbjct: 21 EKLRISITGAGGFIASHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVM 77
Query: 174 EPIL---LEVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 228
+ L VD +++LA + + + N + N + + NML A+ G RF S
Sbjct: 78 DNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYAS 137
Query: 229 TSEVYG-----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA 283
++ +Y D + + W P + Y K E L Y + GIE R+
Sbjct: 138 SACIYPEFKQLDTVVSLKESDAW----PAEPQDAYGLEKLATEELCKHYTKDFGIECRVG 193
Query: 284 RIFNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340
R N YGP GR + F +AL + ++GDG QTRSF F+ + VEG++RL
Sbjct: 194 RFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLT 253
Query: 341 EGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLG 400
+ D P N+G+ +M E+AE+V ++ I P E R D T K+ LG
Sbjct: 254 KSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPE-GVRGRNSDNTLIKEKLG 312
Query: 401 WEPRVTLRKGL 411
W P + L+ GL
Sbjct: 313 WAPTMRLKDGL 323
>sp|Q93VR3|GME_ARATH GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1
SV=1
Length = 377
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 151/329 (45%), Gaps = 17/329 (5%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
++L+I +TG GF+ SH+ RL G VI D K +++ F L+ V+
Sbjct: 26 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 82
Query: 174 EPILL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 228
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 83 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 142
Query: 229 TSEVYGD--PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++ +Y + L+ + P + Y K E L Y++ GIE RI R
Sbjct: 143 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFH 202
Query: 287 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + D
Sbjct: 203 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 262
Query: 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
P N+G+ +M E+AE+V ++ I P E R D K+ LGW P
Sbjct: 263 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 321
Query: 404 RVTLRKGLPLMVADFRHRIFGDQKEAGGG 432
+ L++GL + + +I +KE G
Sbjct: 322 NMRLKEGLRITYFWIKEQI---EKEKAKG 347
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 145/325 (44%), Gaps = 33/325 (10%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+R LVTG AGF+GS LVDRL+ G SV+ +DN+ TG+ NL H N + D+V
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTA 60
Query: 176 ILLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229
L + + ++HLA +P NV+GT+ + A++ G R ++ ++
Sbjct: 61 DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHTS 120
Query: 230 S--EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
S +YG P ++P ET P S Y GK E + G++ N
Sbjct: 121 SGGSIYGTPPEYPTPET-----APTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPAN 175
Query: 288 TYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQT----------RSFQFVSDLVEGL 336
YGPR + VV+ F L +P V+GDG T +F VS V G
Sbjct: 176 VYGPRQDPHGEAGVVAIFAQALLSGKPTRVFGDGTNTRDYVFVDDVVDAFVRVSADVGGG 235
Query: 337 IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAK 396
+R FN+G E + +L V + EF P D + DI A+
Sbjct: 236 LR---------FNIGTGKETSDRQLHSAVAAAVGGPDDPEFHPPRLGDLKRSCLDIGLAE 286
Query: 397 QLLGWEPRVTLRKGLPLMVADFRHR 421
++LGW P++ L G+ V FRH+
Sbjct: 287 RVLGWRPQIELADGVRRTVEYFRHK 311
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 145/326 (44%), Gaps = 35/326 (10%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
LVTGGAGF+G + V + RG V+ +D + G + L GN ++ D+ + L
Sbjct: 5 LVTGGAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGAL 64
Query: 178 L-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL----------AKRV 220
+ + D + + A + P I+TNVVGTL +L +R
Sbjct: 65 VTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRD 124
Query: 221 GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEA 280
RFL ST EVYG + + + P S Y K ++ L +H G+
Sbjct: 125 AFRFLHVSTDEVYGTLGETGK----FTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 281 RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340
N YGP + +++ +A+AL EPL VYGDGKQ R + FVSD E + ++
Sbjct: 181 LTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVL 238
Query: 341 EGDHVG-PFNLGNPGEFTMLELAEVVQEIID----------RNARIEFRPNTEDDPHKRK 389
VG +N+G E +E+ + + ++D R ++I + + +
Sbjct: 239 AKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYA 298
Query: 390 PDITKAKQLLGWEPRVTLRKGLPLMV 415
D +K K LGWEP T +G+ L V
Sbjct: 299 IDASKLKDELGWEPAYTFEQGIALTV 324
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 149/319 (46%), Gaps = 20/319 (6%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRG---DSVIVVDNYFT--GKKDNLIHHFGNPRFELIRHDV 172
+LVTG AGF+GS V L+ G D V+ + T G DNL G+PR+ R D+
Sbjct: 5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDI 64
Query: 173 VEP----ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 227
+ ++ DQ+ HLA + + ++TNV GT +L A R G A F+
Sbjct: 65 CDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQV 124
Query: 228 STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
ST EVYG L+H W P+ S Y K + + L + +H G++ R+ R N
Sbjct: 125 STDEVYGS-LEHGS----WTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSN 179
Query: 288 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG- 346
YGPR + +++ F+ + + +YGDG R + V D V G+ + G
Sbjct: 180 NYGPRQFPE--KLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHVRGIEAVRTRGRAGR 237
Query: 347 PFNLGNPGEFTMLELAEVVQEIIDRN-ARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRV 405
+N+G + EL ++ E + +E+ + + + D T+ ++ LG+ P V
Sbjct: 238 VYNIGGGATLSNKELVGLLLEAAGADWGSVEYVEDRKGHDRRYAVDSTRIQRELGFAPAV 297
Query: 406 TLRKGLPLMVADF-RHRIF 423
L GL VA + +HR +
Sbjct: 298 DLADGLAATVAWYHKHRSW 316
>sp|B4ETL7|ARNA_PROMH Bifunctional polymyxin resistance protein ArnA OS=Proteus mirabilis
(strain HI4320) GN=arnA PE=3 SV=1
Length = 660
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 156/357 (43%), Gaps = 44/357 (12%)
Query: 90 RVLYEAAEVQHVNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149
R+ E V V G K ++R+ R+L+ G GF+G+HL +RL+ G+ D Y
Sbjct: 291 RLATEMGIVTDVRVGPKATAQVKRRQ-RVLILGVNGFIGNHLTERLLKDGN----YDIYG 345
Query: 150 TGKKDNLIHHF-GNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKT 202
+ I F GNPRF I DV +E + + D I L A+P+ Y NP++
Sbjct: 346 MDIGSSAIERFIGNPRFHFIEGDVSIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRV 405
Query: 203 IKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCY 258
+ + L ++ + R + STSEVYG + G +N R Y
Sbjct: 406 FELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDKEFDEDNSRLIVGPINK--QRWIY 463
Query: 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKE 312
K+ + + Y G++ + R FN GPR+ I R ++ + +
Sbjct: 464 SVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGS 523
Query: 313 PLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP----FNLGNP-GEFTMLELAEVVQE 367
P+ + G+Q R F ++D +E L R++E N+GNP E ++ ELAE++ +
Sbjct: 524 PIKLVDGGEQKRCFTDINDGIEALFRIIENRDNKCDGQIINIGNPTNEASIRELAEMLLD 583
Query: 368 IIDRNA-RIEFRP--------------NTEDDPHKRKPDITKAKQLLGWEPRVTLRK 409
+++ R F P D RKP I A++LL W+P + R+
Sbjct: 584 CFEKHELRGHFPPFAGFKKIESSSYYGKGYQDVEHRKPSIKNAERLLDWKPTIETRQ 640
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 143/326 (43%), Gaps = 35/326 (10%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
LVTG AGF+G + V + RG V+ +D + G + L GN ++ D+ + L
Sbjct: 5 LVTGRAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGAL 64
Query: 178 L-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL----------AKRV 220
+ + D + + A + P I+TNVVGTL +L +R
Sbjct: 65 VTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRD 124
Query: 221 GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEA 280
RFL ST EVYG + + + P S Y K ++ L +H G+
Sbjct: 125 AFRFLHVSTDEVYGTLGETGK----FTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 281 RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340
N YGP + +++ +A+AL EPL VYGDGKQ R + FVSD E + ++
Sbjct: 181 LTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVL 238
Query: 341 EGDHVG-PFNLGNPGEFTMLELAEVVQEIID----------RNARIEFRPNTEDDPHKRK 389
VG +N+G E +E+ + + ++D R ++I + + +
Sbjct: 239 AKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYA 298
Query: 390 PDITKAKQLLGWEPRVTLRKGLPLMV 415
D +K K LGWEP T +G+ V
Sbjct: 299 IDASKLKDELGWEPAYTFEQGIAQTV 324
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 146/326 (44%), Gaps = 37/326 (11%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVVEP 175
ILVTGGAGF+GS +V ++ DSV+ +D + G ++L NPR+ + D+ +
Sbjct: 9 ILVTGGAGFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDR 68
Query: 176 ILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA----------K 218
L+ D + HLA + + + I+TN+VGT ++L A K
Sbjct: 69 AELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEK 128
Query: 219 RVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGI 278
R RF ST EVYGD H + + P S Y K A+ L + R +
Sbjct: 129 REAFRFHHISTDEVYGD--LHGTDDLF-TETTPYAPSSPYSASKAAADHLVRAWQRTYRL 185
Query: 279 EARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338
+ ++ N YGPR + +++ + AL +PL VYGDG Q R + FV D L +
Sbjct: 186 PSIVSNCSNNYGPRQFPE--KLIPLMILNALSGKPLPVYGDGAQIRDWLFVEDHARALYQ 243
Query: 339 LMEGDHVGP-FNLGNPGEFTMLELAEVVQEIIDRNA------------RIEFRPNTEDDP 385
++ VG +N+G E T LE+ + + +++ A I F +
Sbjct: 244 VVTEGVVGETYNIGGHNEKTNLEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGHD 303
Query: 386 HKRKPDITKAKQLLGWEPRVTLRKGL 411
+ D K ++ LGW P T GL
Sbjct: 304 ARYAVDAAKIRRDLGWLPLETFESGL 329
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 152/329 (46%), Gaps = 39/329 (11%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVV 173
+ ILVTGG+GF+GS L+ +++ D VI +D + + L NPR+ + D+
Sbjct: 2 MNILVTGGSGFIGSALIRYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDIC 61
Query: 174 EPILLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK-------- 218
+ ++E D + HLA + ++TN+VGT +L +AK
Sbjct: 62 DLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDE 121
Query: 219 --RVGARFLLTSTSEVYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG 275
+ RF ST EVYGD L P + +P S Y K + L +HR
Sbjct: 122 AKKTTFRFHHISTDEVYGDLSLSEPA----FTEQSPYHPSSPYSASKAASNHLVQAWHRT 177
Query: 276 LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
G+ I N YG + +++ ++ A+ +PL +YGDG+Q R + FV D V+
Sbjct: 178 YGLPVIITNSSNNYGAYQHAE--KLIPLMISNAVMGKPLPIYGDGQQIRDWLFVEDHVQA 235
Query: 336 LIRLMEGDHVGP-FNLGNPGEFTMLELAEVVQEIIDRNA-----RIEFRPN----TEDDP 385
++ VG +N+G E T LE+ + + ++++ A I++ + +D P
Sbjct: 236 SYLVLTKGRVGENYNIGGNCEKTNLEVVKRICQLLEELAPSKPNHIKYYEDLMTFVKDRP 295
Query: 386 H---KRKPDITKAKQLLGWEPRVTLRKGL 411
+ D +K LGW+P++T +GL
Sbjct: 296 GHDVRYSLDCSKIHAELGWQPQITFEQGL 324
>sp|P0C0R6|ARNA_SALCH Bifunctional polymyxin resistance protein ArnA OS=Salmonella
choleraesuis (strain SC-B67) GN=arnA PE=3 SV=1
Length = 660
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLSAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ EGD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVASR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|B4SYX1|ARNA_SALNS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
newport (strain SL254) GN=arnA PE=3 SV=1
Length = 660
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ EGD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|B5FNT9|ARNA_SALDC Bifunctional polymyxin resistance protein ArnA OS=Salmonella dublin
(strain CT_02021853) GN=arnA PE=3 SV=1
Length = 660
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ EGD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|C0Q069|ARNA_SALPC Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1
Length = 660
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ EGD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|Q7N3Q7|ARNA_PHOLL Bifunctional polymyxin resistance protein ArnA OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=arnA PE=3
SV=1
Length = 660
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 160/358 (44%), Gaps = 42/358 (11%)
Query: 90 RVLYEAAEVQHVNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149
R+ + + V V G K + + R+L+ G GF+G+HL +RL+ G+ D Y
Sbjct: 291 RLAVDMSMVTDVRVGPKATTQINHRK-RVLILGVNGFIGNHLTERLLRDGN----YDIYG 345
Query: 150 TGKKDNLIHHF-GNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKT 202
+ I F NPRF I D+ +E + + D + L A+P+ Y NP++
Sbjct: 346 MDIGSSAIERFISNPRFHFIEGDINIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRV 405
Query: 203 IKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG--DPLQHPQAETYWGNVNPIGV-RSCYD 259
+ + L ++ + R + STSEVYG D + + ++ V PI R Y
Sbjct: 406 FELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDKEFDEDDSRL-IVGPINKQRWIYS 464
Query: 260 EGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEP 313
K+ + + Y G++ + R FN GPR+ I R ++ + + P
Sbjct: 465 VSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSP 524
Query: 314 LTVYGDGKQTRSFQFVSDLVEGLIRLM---EGDHVGP-FNLGNP-GEFTMLELAEVVQEI 368
+ + G+Q R F ++D +E L R++ EG G N+GNP E ++ +LAE++ +
Sbjct: 525 IKLVDGGEQKRCFTDINDGIEALFRIIENREGLCDGQIINIGNPTNEASIRQLAEILLDS 584
Query: 369 I-DRNARIEFRP--------------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D R F P D RKP I A++LL W+P + +++ +
Sbjct: 585 FEDHELRDHFPPFAGFKKVESGSYYGKGYQDVEHRKPSIKNAERLLDWKPTIDMKQTI 642
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 143/317 (45%), Gaps = 28/317 (8%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNYFTGKKD--NLIHHFGNPRFELIRH 170
K IL+TG AGF+ SH+ +RL+ + D IVV + D NL F +P F+ ++
Sbjct: 7 KPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKG 66
Query: 171 DVVEPILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA- 222
D+ L+ +D I H A + N + K N+ GT +L K G
Sbjct: 67 DIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQI 126
Query: 223 -RFLLTSTSEVYGDPLQHPQAETYWGN----VNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
RF+ ST EVYG+ + + + NP Y K AE L M Y R G
Sbjct: 127 RRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYG 180
Query: 278 IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337
+ R N YGP + +++ F+ A+ +PL ++GDG RS+ + D+ E
Sbjct: 181 LPVITTRGNNVYGPNQFPE--KMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFE 238
Query: 338 RLMEGDHVG-PFNLGNPGEFTMLELAEVVQEII--DRNARIEFRPNTEDDPHKRKPDITK 394
++ +G +N+G E ++++A + ++ D + I+F N + + D K
Sbjct: 239 VVLHKGEIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQK 298
Query: 395 AKQLLGWEPRVTLRKGL 411
K+ LGW+ R GL
Sbjct: 299 LKK-LGWQERTNWEDGL 314
>sp|Q8Z540|ARNA_SALTI Bifunctional polymyxin resistance protein ArnA OS=Salmonella typhi
GN=arnA PE=3 SV=1
Length = 660
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL+D + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLDEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ EGD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ L WEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMR 639
>sp|B5BCP6|ARNA_SALPK Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1
Length = 660
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL+D + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLDEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ EGD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ L WEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMR 639
>sp|Q5PNA6|ARNA_SALPA Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=arnA PE=3
SV=1
Length = 660
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL+D + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLDEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ EGD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ L WEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMR 639
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 145/317 (45%), Gaps = 28/317 (8%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNY-FTGKKDNLIHHFGNPRFELIRH 170
K IL+TG AGF+ SH+ +RL+ ++V+D + NL +P F+ ++
Sbjct: 5 KPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKG 64
Query: 171 DVVEPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA- 222
D+ L+ E+D I H A + N + K N+ GT +L K G
Sbjct: 65 DIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQI 124
Query: 223 -RFLLTSTSEVYGDPLQHPQAETYWGN----VNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
RF+ ST EVYG+ + + + NP Y K AE L M Y R G
Sbjct: 125 RRFIHVSTDEVYGETDEDASVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYG 178
Query: 278 IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL- 336
+ R N YGP + +++ F+ A+ +PL ++GDG RS+ + D+ E
Sbjct: 179 LPVITTRGNNVYGPNQFPE--KLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFE 236
Query: 337 IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEI--IDRNARIEFRPNTEDDPHKRKPDITK 394
+ L +G+ +N+G E ++++A + ++ ID ++ I++ N + + D K
Sbjct: 237 VVLHKGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQK 296
Query: 395 AKQLLGWEPRVTLRKGL 411
K+ LGW R +GL
Sbjct: 297 LKK-LGWCERTNWEEGL 312
>sp|O52325|ARNA_SALTY Bifunctional polymyxin resistance protein ArnA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=arnA PE=2 SV=1
Length = 660
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ +GD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|B5EZH8|ARNA_SALA4 Bifunctional polymyxin resistance protein ArnA OS=Salmonella agona
(strain SL483) GN=arnA PE=3 SV=1
Length = 660
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ +GD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|B5R272|ARNA_SALEP Bifunctional polymyxin resistance protein ArnA OS=Salmonella
enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1
Length = 660
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ +GD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|B4TBG6|ARNA_SALHS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
heidelberg (strain SL476) GN=arnA PE=3 SV=1
Length = 660
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ +GD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|A9N5B2|ARNA_SALPB Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3
SV=1
Length = 660
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ +GD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|B5RCC4|ARNA_SALG2 Bifunctional polymyxin resistance protein ArnA OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3
SV=1
Length = 660
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILSLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ +GD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ LGWEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMR 639
>sp|A6TF98|ARNA_KLEP7 Bifunctional polymyxin resistance protein ArnA OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=arnA PE=3 SV=1
Length = 661
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 148/342 (43%), Gaps = 49/342 (14%)
Query: 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY----FTGKKDNLIHHFGNP 163
P+ ++ R+L+ G GF+G+HL +RL+ DNY D + P
Sbjct: 308 PVVAIKRRTRVLILGVNGFIGNHLTERLLQD-------DNYEIYGLDIGSDAISRFLDCP 360
Query: 164 RFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 217
RF + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 361 RFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDC 420
Query: 218 KRVGARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 273
+ R + STSEVYG + G +N R Y K+ + + Y
Sbjct: 421 VKYNKRIIFPSTSEVYGMCTDKNFDEDSSNLVVGPINK--QRWIYSVSKQLLDRVIWAYG 478
Query: 274 RGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F
Sbjct: 479 DKNGLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFT 538
Query: 328 FVSDLVEGLIRLME---GDHVGP-FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP-- 379
+SD +E L R++E G G N+GNP E ++ ELAE++ +R+ R F P
Sbjct: 539 DISDGIEALFRIIENKDGRCDGQIINIGNPDNEASIKELAEMLLACFERHPLRDRFPPFA 598
Query: 380 -----NTED-------DPHKRKPDITKAKQLLGWEPRVTLRK 409
+ D D RKP I AK+ L WEP+V + +
Sbjct: 599 GFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEE 640
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 154/331 (46%), Gaps = 26/331 (7%)
Query: 117 RILVTGGAGFVGSHLVDRLM-DRGDSVIV-VDNY-FTGKKDNLIHHFGNPRFELIRHDVV 173
R+LVTGGAGF+ SH++ L+ D D +IV +D + NL ++ I+ D+
Sbjct: 19 RVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDIC 78
Query: 174 EP----ILLEVDQIYHLACPASPVHYKFNPVKTIK---TNVVGTLNMLGLAKRVGA-RFL 225
+ +L EV++I + A+ H + V+ + NV GT ++ A G +F+
Sbjct: 79 DSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKFI 138
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
ST EVYG L E+ +P + Y K AE Y I R
Sbjct: 139 YVSTDEVYGGSLDQEFDES-----SPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRS 193
Query: 286 FNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV 345
N YGP + +V+ F++ ++G G Q R+F + +D+VE + ++
Sbjct: 194 SNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEP 251
Query: 346 GP-FNLGNPGEFTMLELA-EVVQEIIDRNARIE---FRPNTEDDPHK--RKPDITKAKQL 398
G +N+G E ++++LA E++Q I + N+ E + D PH R P ++
Sbjct: 252 GEIYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHS 311
Query: 399 LGWEPRVTLRKGLPLMVADFRHRIFGDQKEA 429
LGW+P+V +G+ V +R + F + K A
Sbjct: 312 LGWKPKVPWEEGIKKTVEWYR-KNFHNWKNA 341
>sp|A8GDR7|ARNA_SERP5 Bifunctional polymyxin resistance protein ArnA OS=Serratia
proteamaculans (strain 568) GN=arnA PE=3 SV=1
Length = 660
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 155/357 (43%), Gaps = 44/357 (12%)
Query: 90 RVLYEAAEVQHVNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149
R+ E V V K P + ++ R+L+ G GF+G+HL +RL+ R D D Y
Sbjct: 291 RLAQEMGIVTDVRLAAK-PNAVMKRRTRVLILGVNGFIGNHLTERLL-RDDRY---DIYG 345
Query: 150 TGKKDNLIHHF-GNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKT 202
+ I F GNPRF + D+ +E + + D I L A+P+ Y NP++
Sbjct: 346 LDIGSDAISRFLGNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRV 405
Query: 203 IKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCY 258
+ + L ++ + R + STSEVYG + G +N R Y
Sbjct: 406 FELDFEENLKIVRDCVKYNKRIIFPSTSEVYGMCDDKEFDEDHSRLIVGPINK--QRWIY 463
Query: 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKE 312
K+ + + Y G++ + R FN GPR+ I R ++ + +
Sbjct: 464 SVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGS 523
Query: 313 PLTVYGDGKQTRSFQFVSDLVEGLIRLME---GDHVGPF-NLGNP-GEFTMLELAEVVQE 367
P+ + G Q R F ++D +E L R++E G G N+GNP E ++ ELAE++ E
Sbjct: 524 PIKLMDGGAQKRCFTDINDGIEALFRIIENRDGLCDGQIVNIGNPTNEASIRELAEMLLE 583
Query: 368 IIDRNA-RIEFRP--------------NTEDDPHKRKPDITKAKQLLGWEPRVTLRK 409
+ + R F P D R P I A++LL W+P + +++
Sbjct: 584 SFNNHPLRDRFPPFAGFKDVESSSYYGKGYQDVEHRTPSIKNARRLLDWQPTIAMQQ 640
>sp|B5XTK9|ARNA_KLEP3 Bifunctional polymyxin resistance protein ArnA OS=Klebsiella
pneumoniae (strain 342) GN=arnA PE=3 SV=1
Length = 661
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 151/340 (44%), Gaps = 45/340 (13%)
Query: 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY----FTGKKDNLIHHFGNP 163
P+ ++ R+L+ G GF+G+HL +RL+ DNY D + +P
Sbjct: 308 PVVAIKRRTRVLILGVNGFIGNHLTERLLQD-------DNYEIYGLDIGSDAISRFLESP 360
Query: 164 RFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 217
RF + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 361 RFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDC 420
Query: 218 KRVGARFLLTSTSEVYGDPL-QHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRG 275
+ R + STSEVYG ++ +T V PI R Y K+ + + Y
Sbjct: 421 VKYNKRIIFPSTSEVYGMCTDKNFDEDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDK 480
Query: 276 LGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329
++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 481 YDLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDI 540
Query: 330 SDLVEGLIRLME---GDHVGP-FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---- 379
SD +E L R++E G G N+GNP E ++ ELAE++ +R+ R F P
Sbjct: 541 SDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEMLLACFERHPLRDRFPPFAGF 600
Query: 380 ---NTED-------DPHKRKPDITKAKQLLGWEPRVTLRK 409
+ D D RKP I AK+ L WEP+V + +
Sbjct: 601 REVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEE 640
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 145/327 (44%), Gaps = 37/327 (11%)
Query: 117 RILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVVE 174
+ILVTGGAGF+GS +V ++ + DSV+ +D + G ++L NPR+ + D+ +
Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICD 62
Query: 175 PILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 217
L+ D + HLA + + + I+TN+VGT N+L A
Sbjct: 63 RAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSE 122
Query: 218 KRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
K RF ST EVYGD + + P S Y K +++ L + R G
Sbjct: 123 KHEAFRFHHISTDEVYGDL---SGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 278 IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337
+ + N YGP + +++ + AL +PL VYGDG Q R + FV D L
Sbjct: 180 LPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARALY 237
Query: 338 RLMEGDHVGP-FNLGNPGEFTMLELAEVVQEIIDRNA------------RIEFRPNTEDD 384
+++ VG +N+G E +E+ + + +++ A I F +
Sbjct: 238 QVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGH 297
Query: 385 PHKRKPDITKAKQLLGWEPRVTLRKGL 411
+ D K ++ LGW+P T GL
Sbjct: 298 DARYAVDTAKIRRDLGWQPLETFESGL 324
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 141/313 (45%), Gaps = 28/313 (8%)
Query: 118 ILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVVE 174
IL+TG AGF+ SH+ +RL+ ++V+D + NL +P F+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIAS 68
Query: 175 PILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFL 225
L+ +D I H A + N + K N+ GT +L K G RF+
Sbjct: 69 ADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
ST EVYG D L + NP Y K AE L M Y R G+
Sbjct: 129 HVSTDEVYGETDEDALVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVI 182
Query: 282 IARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341
R N YGP + +++ F+ A+R + L ++GDG RS+ + D+ E ++
Sbjct: 183 TTRGNNVYGPNQFPE--KLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLH 240
Query: 342 GDHVG-PFNLGNPGEFTMLELAEVVQEI--IDRNARIEFRPNTEDDPHKRKPDITKAKQL 398
VG +N+G E + ++A+ + ++ +D A I+F N + + D K K+
Sbjct: 241 KGEVGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLKK- 299
Query: 399 LGWEPRVTLRKGL 411
LGW R T +GL
Sbjct: 300 LGWSERTTWEEGL 312
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 106/265 (40%), Gaps = 38/265 (14%)
Query: 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHD 171
Q+ SL+ L+ G G++G L+ ++ D K + + +G R E R
Sbjct: 381 QKPSLKFLIYGKTGWIGG-LLGKICD---------------KQGIAYEYGKGRLE-DRSS 423
Query: 172 VVEPIL-LEVDQIYHLACPASPVHYKF---NPVKTIKTNVVGTLNMLGLAKRVGARFLLT 227
+++ I ++ +++ A + + + +TI+ NV GTL + + + G +
Sbjct: 424 LLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNF 483
Query: 228 STSEVYGDPLQHPQAE--TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
+T ++ +HP+ + P S Y + K E L +Y + R+
Sbjct: 484 ATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPIS 543
Query: 286 FNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV 345
+ PR NF+ + R + S + +L+ I + + +
Sbjct: 544 SDLNNPR----------NFITKISRYNKVV-----NIPNSMTVLDELLPISIEMAKRNLK 588
Query: 346 GPFNLGNPGEFTMLELAEVVQEIID 370
G +N NPG + E+ E+ ++ I+
Sbjct: 589 GIWNFTNPGVVSHNEILEMYRDYIN 613
>sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=arnA PE=3 SV=1
Length = 673
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 149/341 (43%), Gaps = 41/341 (12%)
Query: 105 GKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR 164
G + +QR+ R+L+ G GF+G+HL +RL+ R D + D + G+PR
Sbjct: 312 GNLASRVQRRRTRVLILGVNGFIGNHLTERLL-RDDRYEIYG--LDISSDAIARFLGDPR 368
Query: 165 FELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK 218
F + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 369 FHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCV 428
Query: 219 RVGARFLLTSTSEVYG--DPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRG 275
R R + STSEVYG D + + +T V PI R Y K+ + + Y
Sbjct: 429 RYNKRIVFPSTSEVYGMCDDKEFDE-DTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAK 487
Query: 276 LGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329
G+ + R FN GPR+ I R ++ + + P+ + G Q R F +
Sbjct: 488 NGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDI 547
Query: 330 SDLVEGLIRLME---GDHVGP-FNLGNP-GEFTMLELAEVVQE----------------I 368
D +E L R++E G G N+GNP E ++ EL E++
Sbjct: 548 HDGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEMLLTSFNAHPLRDRFPPFAGF 607
Query: 369 IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRK 409
ID + + +D H R P I AK+LL WEP V + +
Sbjct: 608 IDVESSSYYGKGYQDVAH-RTPSIRNAKRLLEWEPTVKMEQ 647
>sp|Q2NRV7|ARNA_SODGM Bifunctional polymyxin resistance protein ArnA OS=Sodalis
glossinidius (strain morsitans) GN=arnA PE=3 SV=1
Length = 660
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 147/340 (43%), Gaps = 41/340 (12%)
Query: 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFEL 167
PL ++ R+L+ G GF+G+HL +RL+ G+ I + T D + NP F
Sbjct: 308 PLVSHKRRTRVLILGVNGFIGNHLTERLLRDGNYEIYGLDIGT---DAISRFMVNPLFHF 364
Query: 168 IRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRHCVKYQ 424
Query: 222 ARFLLTSTSEVYG---DPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGLG 277
R + STSEVYG DP+ + V PI R Y K+ + + Y G
Sbjct: 425 KRIIFPSTSEVYGMCTDPVFDEDDSSL--IVGPINKQRWIYSVSKQLLDRVLWAYGEKEG 482
Query: 278 IEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331
+ + R FN GPR+ I R ++ + + + + G Q R F +SD
Sbjct: 483 LRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKRCFTDISD 542
Query: 332 LVEGLIRLMEGDHVGP----FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP------ 379
+E L R++E N+GNP E ++ +LAE++ +R+ R F P
Sbjct: 543 GIEALFRIIENKDNNCDGQIINIGNPDNEASIRQLAELLLASFERHPLRQHFPPFAGFRD 602
Query: 380 --------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D RKP I AK+LLGW P V + + +
Sbjct: 603 VESSSYYGKGYQDVEHRKPSIRNAKRLLGWAPSVPMAQTI 642
>sp|O06485|YFNG_BACSU Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis
(strain 168) GN=yfnG PE=3 SV=2
Length = 322
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 149/317 (47%), Gaps = 31/317 (9%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSV--IVVD-----NYFTG---KKDNLIHHFGNP 163
K+ + VTG G +GS+LV L+++G +V +V D N + G KK N++
Sbjct: 5 KNKNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQSNLYQGEHIKKMNIV------ 58
Query: 164 RFELIRHDVVEPIL--LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR-- 219
R L V+E L E+D ++HLA A NP+ T + N++GT N+L ++
Sbjct: 59 RGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHP 118
Query: 220 VGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE 279
+ R ++ S+ + YGD P E P+ + YD K A+ ++ Y G+
Sbjct: 119 LIKRVIVASSDKAYGDQENLPYDENM-----PLQGKHPYDVSKSCADLISHTYFHTYGLP 173
Query: 280 ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339
I R N YG ++ R++ + L E + DG R + ++ D V+ + L
Sbjct: 174 VCITRCGNLYGGGD-LNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLL 232
Query: 340 ---MEGDHVG--PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITK 394
ME +++ FN N + T+LEL E + + ++ N + + ++ + K
Sbjct: 233 AEKMEENNLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPKVLNQGSNEIKHQYLSAEK 292
Query: 395 AKQLLGWEPRVTLRKGL 411
A++LL W P T+ +GL
Sbjct: 293 ARKLLNWTPAYTIDEGL 309
>sp|A0KGY6|ARNA_AERHH Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=arnA PE=3 SV=1
Length = 663
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 155/353 (43%), Gaps = 38/353 (10%)
Query: 94 EAAEVQHVNAGGKVPLGLQRKSL-RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK 152
E V+ + G K L++ L R+L+ G GF+G+HL +RL+ G + + +
Sbjct: 295 ELGLVEGMKIGAKASNALRKARLTRVLILGVNGFIGNHLTERLLQDGGYEVYGLDIGSSA 354
Query: 153 KDNLIHHFGNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTN 206
D I G+P F + D+ +E + + D I L A+P+ Y NP++ + +
Sbjct: 355 VDRFI---GHPNFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELD 411
Query: 207 VVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHP-QAETYWGNVNPIGV-RSCYDEGKRT 264
L ++ + R + STSEVYG H ++ V PI R Y K+
Sbjct: 412 FEENLKIVRYCVKYHKRIIFPSTSEVYGMCDDHSFDEDSSRLIVGPINKQRWIYSVSKQL 471
Query: 265 AETLTMDYHRGLGIEARIARIFNTYGPRM-CIDDGRV-----VSNFVAQALRKEPLTVYG 318
+ + Y + G+ + R FN GPR+ +D R+ ++ + + P+ +
Sbjct: 472 LDRVIWAYGKKEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVD 531
Query: 319 DGKQTRSFQFVSDLVEGLIRLMEGDHVGP----FNLGNP-GEFTMLELAEVVQEIIDRNA 373
G Q R F + D +E L R++E N+GNP E ++ ++AE++ + +
Sbjct: 532 GGAQKRCFTDIEDGIEALFRIIENKENRCDGQIINIGNPDNEASIQQMAEILLAKFEAHP 591
Query: 374 -RIEFRP--------------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
R F P + D R+P I A++LL WEP + + + +
Sbjct: 592 LRDHFPPFAGFKLVESKSFYGDGYQDVSHRRPSIANARRLLDWEPTIEMEETI 644
>sp|B4TPI2|ARNA_SALSV Bifunctional polymyxin resistance protein ArnA OS=Salmonella
schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1
Length = 660
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 146/333 (43%), Gaps = 43/333 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHD 171
++ +R+L+ G GF+G+HL +RL++ + + Y N I F +PRF + D
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEV----YGMDIGSNAISRFLLHPRFHFVEGD 368
Query: 172 V------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225
+ +E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVV 428
Query: 226 LTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
STSEVYG ++ G VN R Y K+ + + Y G+
Sbjct: 429 FPSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
Query: 282 IARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN GPR+ I R ++ + + P+ + G+Q R F + D +E
Sbjct: 487 LFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEA 546
Query: 336 LIRLM--EGDHVGP--FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP---------- 379
L R++ +GD N+GNP E ++ ELA ++ + D++ R F P
Sbjct: 547 LFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESR 606
Query: 380 ----NTEDDPHKRKPDITKAKQLLGWEPRVTLR 408
D RKP I A++ L WEP + +R
Sbjct: 607 SYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMR 639
>sp|A4WAM3|ARNA_ENT38 Bifunctional polymyxin resistance protein ArnA OS=Enterobacter sp.
(strain 638) GN=arnA PE=3 SV=1
Length = 660
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 144/340 (42%), Gaps = 41/340 (12%)
Query: 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFEL 167
P+ ++ R+L+ G GF+G+HL +RL+ D V G D + GN RF
Sbjct: 308 PVSAIKRRTRVLILGVNGFIGNHLTERLLQ--DDNFEVYGLDIGS-DAISRFIGNSRFHF 364
Query: 168 IRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYQ 424
Query: 222 ARFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
R + STSEVYG + G +N R Y K+ + + Y G
Sbjct: 425 KRIIFPSTSEVYGMCSDKVFDEDHSNLIVGPINK--QRWIYSVSKQLLDRVIWAYGEKEG 482
Query: 278 IEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331
+ + R FN GPR+ I R ++ + + P+ + G+Q R F +SD
Sbjct: 483 LRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDISD 542
Query: 332 LVEGLIRLMEGDHVGP----FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP------ 379
+E L R++E + N+GNP E ++ ELAE++ +++ R F P
Sbjct: 543 GIEALFRIIENKNSNCDGQIINIGNPDNEASIKELAEMLLASFEKHPLRNHFPPFAGFRE 602
Query: 380 --------NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
D RKP I A +L+ W P V + K +
Sbjct: 603 VESSTYYGKGYQDVEHRKPSIRNAHRLISWTPTVEMEKTI 642
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,706,028
Number of Sequences: 539616
Number of extensions: 7692073
Number of successful extensions: 25859
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 24741
Number of HSP's gapped (non-prelim): 682
length of query: 447
length of database: 191,569,459
effective HSP length: 121
effective length of query: 326
effective length of database: 126,275,923
effective search space: 41165950898
effective search space used: 41165950898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)