Query 013227
Match_columns 447
No_of_seqs 176 out of 989
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 2.9E-64 6.3E-69 494.6 20.8 379 50-439 138-518 (549)
2 COG4299 Uncharacterized protei 100.0 3.7E-50 8E-55 382.7 21.6 295 54-418 6-304 (371)
3 COG2311 Predicted membrane pro 99.9 2.2E-22 4.8E-27 205.2 22.1 137 49-216 6-158 (394)
4 PRK10835 hypothetical protein; 99.8 1.7E-18 3.8E-23 178.5 24.9 118 59-211 1-134 (373)
5 PF07786 DUF1624: Protein of u 99.8 4.2E-19 9.1E-24 170.1 17.3 113 55-179 1-118 (223)
6 COG3503 Predicted membrane pro 99.8 3E-17 6.5E-22 160.3 17.9 119 54-184 14-137 (323)
7 PF10129 OpgC_C: OpgC protein; 99.0 5.7E-08 1.2E-12 100.0 23.4 83 55-141 1-86 (358)
8 PF01757 Acyl_transf_3: Acyltr 98.6 1.8E-05 3.8E-10 76.7 22.6 54 57-110 2-61 (340)
9 COG4645 Uncharacterized protei 98.3 0.00024 5.1E-09 71.5 23.9 89 50-142 18-112 (410)
10 PRK03854 opgC glucans biosynth 98.2 0.0038 8.2E-08 64.5 29.8 89 51-140 4-101 (375)
11 PF04235 DUF418: Protein of un 98.1 2.1E-05 4.5E-10 71.9 9.2 46 379-426 62-107 (163)
12 PF06423 GWT1: GWT1; InterPro 97.8 0.00028 6E-09 63.1 11.4 118 307-426 3-134 (136)
13 COG3274 Predicted O-acyltransf 97.4 0.029 6.3E-07 56.6 20.0 57 53-109 2-65 (332)
14 COG5062 Uncharacterized membra 94.7 0.29 6.2E-06 50.0 10.7 108 306-416 266-377 (429)
15 COG1835 Predicted acyltransfer 94.4 7.2 0.00016 40.4 21.0 77 51-133 10-90 (386)
16 COG3594 NolL Fucose 4-O-acetyl 94.0 8.5 0.00018 39.6 22.5 50 53-108 2-54 (343)
17 COG4763 Predicted membrane pro 88.5 1 2.3E-05 45.3 6.1 46 383-431 274-319 (388)
18 COG3936 Protein involved in po 67.8 79 0.0017 31.9 11.4 39 401-441 270-308 (349)
19 PF15345 TMEM51: Transmembrane 59.3 6.7 0.00014 38.1 2.3 29 370-398 59-87 (233)
20 PF05857 TraX: TraX protein; 40.1 3.3E+02 0.0071 25.7 12.7 70 58-142 2-71 (219)
21 PF07779 Cas1_AcylT: 10 TM Acy 37.8 2E+02 0.0043 31.3 9.5 45 399-443 403-447 (488)
22 PF07786 DUF1624: Protein of u 36.5 58 0.0013 30.8 4.8 20 399-418 202-221 (223)
23 PRK05771 V-type ATP synthase s 31.7 7.7E+02 0.017 27.5 13.8 22 342-363 395-417 (646)
24 COG3619 Predicted membrane pro 30.2 2.6E+02 0.0056 27.3 8.1 55 87-143 52-106 (226)
25 PF11654 DUF2665: Protein of u 27.7 78 0.0017 23.2 3.0 20 99-118 9-28 (47)
26 TIGR02230 ATPase_gene1 F0F1-AT 25.9 2.3E+02 0.0049 24.1 6.0 23 309-331 43-67 (100)
27 COG3814 Uncharacterized protei 23.2 59 0.0013 29.2 2.0 17 47-63 139-155 (157)
28 KOG1638 Steroid reductase [Lip 22.7 1.2E+02 0.0026 29.9 4.2 86 54-142 72-164 (257)
29 PF05251 UPF0197: Uncharacteri 22.6 4.2E+02 0.0091 21.5 6.9 13 317-329 21-33 (77)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.9e-64 Score=494.59 Aligned_cols=379 Identities=45% Similarity=0.721 Sum_probs=334.3
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHH
Q 013227 50 QHQQRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILR 129 (447)
Q Consensus 50 ~~~~~Ri~slD~lRGlail~Milvn~~~~~~~~~~h~~w~G~~~~Dlv~P~FlFl~G~s~~l~~~r~~~~~~~~~~~~rR 129 (447)
++..+|+.|+|++||+++.+||+||+.|+.+|+.+|++|||.+++|.|+|+|+|++|+|++++.|+...|.+..+|..-|
T Consensus 138 a~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmPfFLfIvGVsials~K~~s~rf~a~rKa~~R 217 (549)
T KOG4683|consen 138 ATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMPFFLFIVGVSIALSVKSQSSRFSATRKAKAR 217 (549)
T ss_pred CCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred HHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhHHHHHHHHHH
Q 013227 130 ALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALVL 209 (447)
Q Consensus 130 ~~~L~llG~~~~~~~~~~~~~~~~g~~~~~~r~~gVLq~I~~~y~i~~llll~~~~~~~~~~~~~~~~~~~~~~~~a~~l 209 (447)
..+|++.|++++.++.++++++++|.|.+++|++|||||+|++|++.+++-.+..++.+. +..++.+++-+.
T Consensus 218 ~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~~~~~--------~~S~~R~V~~~~ 289 (549)
T KOG4683|consen 218 ICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCRPISP--------QRSWQRAVHDVC 289 (549)
T ss_pred HHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCcc--------ccchhhhhhHHH
Confidence 999999999999989999999999999999999999999999999999987765542211 233445566666
Q ss_pred HHHHHHHHHhccCCCCCCCCCccCCCCCCcccccccccCCCCC-ccCcHHHHHHHHhhcccccccccccccccccccCCC
Q 013227 210 TTLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTG-PACNAVGMIDRKILGIQHLYRKPIYSRTKQCSINSP 288 (447)
Q Consensus 210 l~~~~~l~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~id~~l~g~~h~y~~~~~~~~~~~~~~~p 288 (447)
+..+.+..+...+++|...++.......++.|...||..|... |.||..+|.|+.++|.+|+|++|++++.++|.+++|
T Consensus 290 L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~CnAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n~P 369 (549)
T KOG4683|consen 290 LFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKCNAVGYADRQVLGIAHIYQHPTAKRVKDCSINYP 369 (549)
T ss_pred HHHHHHHHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCccchhhhHHhhhhhHHHhcCchHHHhhhcccCCC
Confidence 6667666666667777665543333345555655577777766 479999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhc-ccccCC
Q 013227 289 DYGPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDFVG-MHLNKA 367 (447)
Q Consensus 289 ~~g~~~~~~~~~~~~~~dpeglls~lpai~~~LlG~~~G~~l~~~~~~~~~~~~l~~~G~~ll~lGl~l~~~~-~pi~K~ 367 (447)
-+|++|+||++||++||||||+++++.++..+++|..+|+++.+.+.+..|+++|...++.+.++|..++.+. +|.||+
T Consensus 370 ~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~l~llg~tL~~~s~~Plnk~ 449 (549)
T KOG4683|consen 370 NNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAILLGLLGGTLCGFSAIPLNKN 449 (549)
T ss_pred CCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHHHHHHhhhhhcccccchhHh
Confidence 9999999999999999999999999999999999999999887778888999999999998888888887654 688999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHhcHHHHHHHHHHhhhHHHHHhhhccccCCCcch
Q 013227 368 LYSLSYTCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILVACNILPVLLQGFYWRQPQNNI 439 (447)
Q Consensus 368 ~~T~s~vl~t~G~~~l~La~~y~l~d~~~~~~~~~pf~~~G~nsLt~Yll~~~~il~~~~~~~~~~~~~~~~ 439 (447)
+||.||+++|.|.+.++++.+|+++|++.|+.-.-||...|+|++..|+. ++++..++. +||+-|||++
T Consensus 450 L~slsfvCVT~~~A~Li~S~mY~~iDv~EW~~~~~P~~~~GMNAi~~YV~--~~vL~~~~~-W~~R~~~~~~ 518 (549)
T KOG4683|consen 450 LWSLSFVCVTVSLALLILSLMYYFIDVREWSWSGYPFTECGMNAIVMYVG--HSVLHKMLP-WHWRIGEMNT 518 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhHHHhhhccCChhhhccchhHHHHh--HHHHHHhcc-hhhccCCCce
Confidence 99999999999999999999999999999888889999999999999999 689999877 8999999986
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.7e-50 Score=382.72 Aligned_cols=295 Identities=37% Similarity=0.480 Sum_probs=253.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHhccC---CccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHHH
Q 013227 54 RRLISLDVFRGLTVALMILVDDVG---GILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRA 130 (447)
Q Consensus 54 ~Ri~slD~lRGlail~Milvn~~~---~~~~~~~h~~w~G~~~~Dlv~P~FlFl~G~s~~l~~~r~~~~~~~~~~~~rR~ 130 (447)
-|+.|+|++||+++++||+||+.+ ..++++.|++|.|+|.+|+|||.|+|++|.+++++.+|..+.+....++.||.
T Consensus 6 ~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RRa 85 (371)
T COG4299 6 FRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRRA 85 (371)
T ss_pred hhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHHH
Confidence 699999999999999999999965 25779999999999999999999999999999999988877777789999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhHHHHHHHHHH
Q 013227 131 LNLFLLGIFLQGGFFHGINNLKYGVD-IAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALVL 209 (447)
Q Consensus 131 ~~L~llG~~~~~~~~~~~~~~~~g~~-~~~~r~~gVLq~I~~~y~i~~llll~~~~~~~~~~~~~~~~~~~~~~~~a~~l 209 (447)
+.+|++|++++.++... . +.++ .+..|.+||||||++||+++++...+++ .|+|++.+.++
T Consensus 86 a~~f~Lg~Lm~~F~~~~--~--ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~--------------~r~q~~laavL 147 (371)
T COG4299 86 AERFALGYLMGAFVTVR--D--WSVTSHSLTRGMGVLQRIALAYLFAALLVRQLR--------------GRWQALLAAVL 147 (371)
T ss_pred HHHHHHHHHhhhccccc--e--eeeeechhhHHHHHHHHHHHHHHHHHHHHHhcC--------------hHHHHHHHHHH
Confidence 99999999998754211 1 1223 5779999999999999999999877754 78999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCccCCCCCCcccccccccCCCCCccCcHHHHHHHHhhcccccccccccccccccccCCCC
Q 013227 210 TTLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTGPACNAVGMIDRKILGIQHLYRKPIYSRTKQCSINSPD 289 (447)
Q Consensus 210 l~~~~~l~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~id~~l~g~~h~y~~~~~~~~~~~~~~~p~ 289 (447)
+++|++.+...++|+.+ ++...|.++++|......+|+|+..
T Consensus 148 L~gYwl~lm~~p~P~~~------------------------l~~~Gn~g~~~d~l~i~~~hLy~~d-------------- 189 (371)
T COG4299 148 LAGYWLFLMFTPHPAAP------------------------LGGIGNVGESADPLQILNDHLYSAD-------------- 189 (371)
T ss_pred HHHHHHHHhhcCCCccc------------------------cccccccccccchhhhhhhhhhccc--------------
Confidence 99999988766555311 1222377788999999999999842
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Q 013227 290 YGPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDFVGMHLNKALY 369 (447)
Q Consensus 290 ~g~~~~~~~~~~~~~~dpeglls~lpai~~~LlG~~~G~~l~~~~~~~~~~~~l~~~G~~ll~lGl~l~~~~~pi~K~~~ 369 (447)
| -+||||+++++|+.++++.|+.++|++++...+.+....+.+.|+++.++|+.+... +||+|++|
T Consensus 190 -G------------~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~~-fPi~KkLW 255 (371)
T COG4299 190 -G------------GFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAGR-FPISKKLW 255 (371)
T ss_pred -C------------CCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhccccccc-cccchhhc
Confidence 1 279999999999999999999999999766555555667888999999999888643 79999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHhcHHHHHHHHHH
Q 013227 370 SLSYTCLTAGASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILV 418 (447)
Q Consensus 370 T~s~vl~t~G~~~l~La~~y~l~d~~~~~~~~~pf~~~G~nsLt~Yll~ 418 (447)
|+||+++|+|+..+.++.||.+.|.+..+++..||+.+|.|+|..|+++
T Consensus 256 Tssyvl~t~G~~llllaac~~l~e~~~~kr~~~pf~i~GlNalalyvls 304 (371)
T COG4299 256 TSSYVLYTAGLGLLLLAACWVLAESPGGKRLLAPFTIPGLNALALYVLS 304 (371)
T ss_pred CCceeehhhhHHHHHHHHHHHHHcCcccCcCcCceeecCcchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999994
No 3
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.90 E-value=2.2e-22 Score=205.25 Aligned_cols=137 Identities=30% Similarity=0.431 Sum_probs=104.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhccCCccc--c--ccCCCC-cc-----hhHHHHH-----HHHHHHHHHHHHHHhh
Q 013227 49 PQHQQRRLISLDVFRGLTVALMILVDDVGGILP--A--INHSPW-NG-----LTLADFV-----MPFFLFIVGVSLALTY 113 (447)
Q Consensus 49 ~~~~~~Ri~slD~lRGlail~Milvn~~~~~~~--~--~~h~~w-~G-----~~~~Dlv-----~P~FlFl~G~s~~l~~ 113 (447)
|...++|+.++|++||+|+++++++|...+.+| . ..+..| .+ ..+.|++ .|+|.|++|+++.+.+
T Consensus 6 p~~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~~~ 85 (394)
T COG2311 6 PTAQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAMML 85 (394)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Confidence 346678999999999999999999998665443 1 112222 22 1233443 8999999999999999
Q ss_pred ccCCchh-hhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Q 013227 114 KNFPCKV-VATRKAILRALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSK 192 (447)
Q Consensus 114 ~r~~~~~-~~~~~~~rR~~~L~llG~~~~~~~~~~~~~~~~g~~~~~~r~~gVLq~I~~~y~i~~llll~~~~~~~~~~~ 192 (447)
+|+.+|+ +.....+||...|+++|++|..+.|+ | | |.+.|.++|++++.+.+
T Consensus 86 ~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW~-------G-D------------IL~~Ya~~g~ill~~~~------- 138 (394)
T COG2311 86 RRAARKGRRWVALYARRLLLLLLLGLIHALFIWD-------G-D------------ILLAYALTGLILLLFRR------- 138 (394)
T ss_pred HHHHHccCccHHHHHHHHHHHHHHHHHHHHHHhc-------c-h------------HHHHHHHHHHHHHHHHh-------
Confidence 8877666 45566899999999999999987764 5 5 99999999999888876
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Q 013227 193 LSLFRKYRGHWVVALVLTTLYLLL 216 (447)
Q Consensus 193 ~~~~~~~~~~~~~a~~ll~~~~~l 216 (447)
+++|+++.|+..+++.+..+
T Consensus 139 ----~~~k~l~~~~~~l~l~~~~~ 158 (394)
T COG2311 139 ----RKPKTLLIWATALLLLPVLL 158 (394)
T ss_pred ----ccccHHHHHHHHHHHHHHHH
Confidence 45778888877777655443
No 4
>PRK10835 hypothetical protein; Provisional
Probab=99.82 E-value=1.7e-18 Score=178.47 Aligned_cols=118 Identities=25% Similarity=0.313 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhccCCcccc-------ccC--CCCcc--hhHHHH-----HHHHHHHHHHHHHHHhhccCCchhhh
Q 013227 59 LDVFRGLTVALMILVDDVGGILPA-------INH--SPWNG--LTLADF-----VMPFFLFIVGVSLALTYKNFPCKVVA 122 (447)
Q Consensus 59 lD~lRGlail~Milvn~~~~~~~~-------~~h--~~w~G--~~~~Dl-----v~P~FlFl~G~s~~l~~~r~~~~~~~ 122 (447)
+|++||+|+++++++|...+..|. ..+ +.+|. ..+.++ ++|+|.+++|+|+.+..+|.++
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999965332221 111 11111 122333 3899999999999999875322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhHHH
Q 013227 123 TRKAILRALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGH 202 (447)
Q Consensus 123 ~~~~~rR~~~L~llG~~~~~~~~~~~~~~~~g~~~~~~r~~gVLq~I~~~y~i~~llll~~~~~~~~~~~~~~~~~~~~~ 202 (447)
...||...|+++|++|....|. | | |...|+++|++++++.+.+ .+.|++
T Consensus 77 --~~~rRl~~Ll~~GliH~~llw~-------G-D------------IL~~YAv~Gl~l~~~~~~~---------~~~~~L 125 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLLFWD-------G-D------------ILLAYGLVGLICWRLIRDA---------PSVKSL 125 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcc-------c-h------------HHHHHHHHHHHHHHHHhcc---------chhhHH
Confidence 3669999999999999876553 4 5 8899999999998887521 014666
Q ss_pred HHHHHHHHH
Q 013227 203 WVVALVLTT 211 (447)
Q Consensus 203 ~~~a~~ll~ 211 (447)
+.+++++++
T Consensus 126 l~~~~~l~~ 134 (373)
T PRK10835 126 FNTGVVLYL 134 (373)
T ss_pred HHHHHHHHH
Confidence 666655444
No 5
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.82 E-value=4.2e-19 Score=170.13 Aligned_cols=113 Identities=34% Similarity=0.473 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCCc--cccc-cCC--CCcchhHHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHH
Q 013227 55 RLISLDVFRGLTVALMILVDDVGGI--LPAI-NHS--PWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILR 129 (447)
Q Consensus 55 Ri~slD~lRGlail~Milvn~~~~~--~~~~-~h~--~w~G~~~~Dlv~P~FlFl~G~s~~l~~~r~~~~~~~~~~~~rR 129 (447)
|+.++|++||+|+++|+++|..... .+.. .+. .+....+.|.++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 8999999999999999999986531 1111 111 123356789999999999999999999877665 788999
Q ss_pred HHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 013227 130 ALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALC 179 (447)
Q Consensus 130 ~~~L~llG~~~~~~~~~~~~~~~~g~~~~~~r~~gVLq~I~~~y~i~~ll 179 (447)
++.|+++|++++...+. ..++...++||||+||+++++++++
T Consensus 77 ~~~l~~~g~~i~~~~~~--------~~~~~~i~~gIL~~ig~~~ll~~~~ 118 (223)
T PF07786_consen 77 GLKLFLLGLLINLLTFF--------FFPEGFIYFGILQFIGLSMLLAALF 118 (223)
T ss_pred HHHHHHHHHHHHHHHHH--------hcCCceeehhHHHHHHHHHHHHHHH
Confidence 99999999998864321 1335566889999999999988877
No 6
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.76 E-value=3e-17 Score=160.32 Aligned_cols=119 Identities=26% Similarity=0.375 Sum_probs=93.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHhccCCc--cccccCCC-Ccc--hhHHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHH
Q 013227 54 RRLISLDVFRGLTVALMILVDDVGGI--LPAINHSP-WNG--LTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAIL 128 (447)
Q Consensus 54 ~Ri~slD~lRGlail~Milvn~~~~~--~~~~~h~~-w~G--~~~~Dlv~P~FlFl~G~s~~l~~~r~~~~~~~~~~~~r 128 (447)
+|+.+||++||++|+.|++.|...+. ....+-+. -.| ..+++.++|.|+|++|+|+.++.+|+..+ .++++|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 89999999999999999999976541 11111111 011 57889999999999999999999877663 788999
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013227 129 RALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLK 184 (447)
Q Consensus 129 R~~~L~llG~~~~~~~~~~~~~~~~g~~~~~~r~~gVLq~I~~~y~i~~llll~~~ 184 (447)
|+++|..++++++..-|. .-+++++++||||.|++++++...+ +|++
T Consensus 91 RgL~l~~l~l~It~~Twf--------~~P~sfI~fgILh~igLa~ll~~~f-l~lP 137 (323)
T COG3503 91 RGLKLAALALAITAVTWF--------AFPDSFIFFGILHAIGLASLLGAAF-LWLP 137 (323)
T ss_pred HHHHHHHHHHHHHHeeeE--------ecCCceehHHHHHHHHHHHHHHHHH-HhCc
Confidence 999999999999875432 1357899999999999999776655 5554
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.03 E-value=5.7e-08 Score=100.01 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhccCCch---hhhHHHHHHHHH
Q 013227 55 RLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCK---VVATRKAILRAL 131 (447)
Q Consensus 55 Ri~slD~lRGlail~Milvn~~~~~~~~~~h~~w~G~~~~Dlv~P~FlFl~G~s~~l~~~r~~~~---~~~~~~~~rR~~ 131 (447)
|...||.+||++++.|.+-|.+++.+..+.+.++ ++.|- +..|+|++|++..+.+.|+.+| ....+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~~---Gfsda-AE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRNF---GFSDA-AEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhccccc---cCCCc-chhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 6778999999999777666665554333333322 33343 3689999999999999765432 357788999999
Q ss_pred HHHHHHHHHH
Q 013227 132 NLFLLGIFLQ 141 (447)
Q Consensus 132 ~L~llG~~~~ 141 (447)
.|...-+.+.
T Consensus 77 ~lY~a~i~l~ 86 (358)
T PF10129_consen 77 QLYVAHIALF 86 (358)
T ss_pred HHHHHHHHHH
Confidence 9887766554
No 8
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=98.57 E-value=1.8e-05 Score=76.74 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHhccCCcccc-ccCCCCcc--h---hHHHHHHHHHHHHHHHHHH
Q 013227 57 ISLDVFRGLTVALMILVDDVGGILPA-INHSPWNG--L---TLADFVMPFFLFIVGVSLA 110 (447)
Q Consensus 57 ~slD~lRGlail~Milvn~~~~~~~~-~~h~~w~G--~---~~~Dlv~P~FlFl~G~s~~ 110 (447)
.++|.+||++++++++.|......+. ........ . .......|+|.+++|+.+.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~ 61 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLA 61 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 57999999999999999975421110 00000000 0 3456678999999999998
No 9
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.34 E-value=0.00024 Score=71.50 Aligned_cols=89 Identities=25% Similarity=0.372 Sum_probs=62.0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhccCCchh-h--hHHHH
Q 013227 50 QHQQRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKV-V--ATRKA 126 (447)
Q Consensus 50 ~~~~~Ri~slD~lRGlail~Milvn~~~~~~~~~~h~~w~G~~~~Dlv~P~FlFl~G~s~~l~~~r~~~~~-~--~~~~~ 126 (447)
+...+|...||++||++++.|.+=|.++..+..+.|-+. ++.|- +-.|+|++|+++.+.+.|+.-++ + ...|+
T Consensus 18 ~v~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~lki 93 (410)
T COG4645 18 AVPMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTLKI 93 (410)
T ss_pred cCccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHHHH
Confidence 355689999999999999888655555543334555443 33332 35799999999999997765432 3 34489
Q ss_pred HHHHHHHHH---HHHHHHh
Q 013227 127 ILRALNLFL---LGIFLQG 142 (447)
Q Consensus 127 ~rR~~~L~l---lG~~~~~ 142 (447)
.||+..|.. .|.++..
T Consensus 94 WrRA~~LY~~himtl~iai 112 (410)
T COG4645 94 WRRAMVLYVAHIMTLVIAI 112 (410)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 999999987 5555543
No 10
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=98.17 E-value=0.0038 Score=64.49 Aligned_cols=89 Identities=19% Similarity=0.095 Sum_probs=57.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhccC--Cccccc----cCCCCcc--hhHHH-HHHHHHHHHHHHHHHHhhccCCchhh
Q 013227 51 HQQRRLISLDVFRGLTVALMILVDDVG--GILPAI----NHSPWNG--LTLAD-FVMPFFLFIVGVSLALTYKNFPCKVV 121 (447)
Q Consensus 51 ~~~~Ri~slD~lRGlail~Milvn~~~--~~~~~~----~h~~w~G--~~~~D-lv~P~FlFl~G~s~~l~~~r~~~~~~ 121 (447)
+.++|...+|.+||+++++.++.|... ...++. +...|-. ....+ ..+|+|.|++|+....+.+|+ +.++
T Consensus 4 ~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~~ 82 (375)
T PRK03854 4 VPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPKR 82 (375)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHH
Confidence 345799999999999999999998632 111111 1111211 01112 348999999999988876544 3345
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 013227 122 ATRKAILRALNLFLLGIFL 140 (447)
Q Consensus 122 ~~~~~~rR~~~L~llG~~~ 140 (447)
..++=++|.+.-++++.++
T Consensus 83 f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 83 WLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 6677778887777777554
No 11
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=98.06 E-value=2.1e-05 Score=71.90 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhcCcchhhhHHHHhcHHHHHHHHHHhhhHHHHH
Q 013227 379 GASGVLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILVACNILPVL 426 (447)
Q Consensus 379 G~~~l~La~~y~l~d~~~~~~~~~pf~~~G~nsLt~Yll~~~~il~~~ 426 (447)
..+....+++..+++..+.+++.+||+.+||||||+|+.| ++++..
T Consensus 62 ~~a~~y~~l~~ll~~~~~~~~~~~~l~~~GrmaLT~Yi~q--sii~~~ 107 (163)
T PF04235_consen 62 LLALGYVALLILLCQKRPRQRLLRPLAAVGRMALTNYILQ--SIIGTL 107 (163)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHhhHHHHHHHHH--HHHHHH
Confidence 3444455566678888777789999999999999999995 666654
No 12
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.79 E-value=0.00028 Score=63.11 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=80.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhcccchh------HHH---HHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHH
Q 013227 307 PEGLLSSVMATVTCLIGLHFGHLIVHFKDHR------DRM---LNWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLT 377 (447)
Q Consensus 307 peglls~lpai~~~LlG~~~G~~l~~~~~~~------~~~---~~l~~~G~~ll~lGl~l~~~~~pi~K~~~T~s~vl~t 377 (447)
-||+.|.+.-++..++|...|+.+...+... +.. .+++.+++++.++..+++....|++.+....+|++++
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vSRRlaNl~Yvlwv 82 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSYIEPVSRRLANLPYVLWV 82 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHhcchHHHHHH
Confidence 4899998888899999999999754333222 112 2344444444434444444557889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcch-----hhhHHHHhcHHHHHHHHHHhhhHHHHH
Q 013227 378 AGASGVLLAGIYFMVDVQGHRR-----VTMVFEWMGLHALMIYILVACNILPVL 426 (447)
Q Consensus 378 ~G~~~l~La~~y~l~d~~~~~~-----~~~pf~~~G~nsLt~Yll~~~~il~~~ 426 (447)
.+.....++.++.+-+.....+ .-..++.+.+|.|+.+++ .+++..+
T Consensus 83 ~a~n~~~l~~~~~i~~~~~~~~~~~~~~~~l~~aiN~N~L~~FLl--aNllTGl 134 (136)
T PF06423_consen 83 LAFNTFFLALYLLIELLLFRPKASYSKTPCLLDAINRNGLFVFLL--ANLLTGL 134 (136)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccHHHHHHcccccHHHHH--HHHHHcc
Confidence 9888776666554333322222 467799999999999999 5776543
No 13
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=97.37 E-value=0.029 Score=56.61 Aligned_cols=57 Identities=19% Similarity=0.424 Sum_probs=40.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHhccCCc-ccc-ccC-CCC---cc-hhHHHHHHHHHHHHHHHHH
Q 013227 53 QRRLISLDVFRGLTVALMILVDDVGGI-LPA-INH-SPW---NG-LTLADFVMPFFLFIVGVSL 109 (447)
Q Consensus 53 ~~Ri~slD~lRGlail~Milvn~~~~~-~~~-~~h-~~w---~G-~~~~Dlv~P~FlFl~G~s~ 109 (447)
.+|+.++|.+|++|++..+.+|..... +.+ +.+ ..| ++ .+....+.|+|..+.|.-+
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL~ 65 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYLF 65 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999965321 211 122 224 33 3666778999999999754
No 14
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=94.72 E-value=0.29 Score=50.02 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=59.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHHHHHHHhhhcccc-cCCCchHHHHHHHHHHHHH
Q 013227 306 DPEGLLSSVMATVTCLIGLHFGHLI-VHFKDHRDRMLNWIILSSCLIGLGLSLDFVGMHL-NKALYSLSYTCLTAGASGV 383 (447)
Q Consensus 306 dpeglls~lpai~~~LlG~~~G~~l-~~~~~~~~~~~~l~~~G~~ll~lGl~l~~~~~pi-~K~~~T~s~vl~t~G~~~l 383 (447)
+-||+.+.+|-+++++.|+..|+.. .+.+.+++.|+.|...-+..+++-.+.++. +. +.+.-...|++...-+-.
T Consensus 266 NrEGI~sll~yisIfl~g~~tg~vvf~~kpTr~~~wk~~~~~~af~lciylVfnf~--s~ssRRlaNlpfv~wi~~lh~- 342 (429)
T COG5062 266 NREGITSLLPYISIFLMGADTGKVVFKKKPTRKKAWKIIILYNAFFLCVYLVFNFY--STSSRRLANLPFVMWIMLLHT- 342 (429)
T ss_pred chhhhhhcchhhhheeeecccceEEecCCCchHHHHHHHHHHHHHHHHHHHHHhhc--ccchhhhcCccHHHHHHHHHH-
Confidence 4689999999999999999999964 333333333444443323233333334432 33 556666677777664442
Q ss_pred HHHHHHHHHHhcC--cchhhhHHHHhcHHHHHHHH
Q 013227 384 LLAGIYFMVDVQG--HRRVTMVFEWMGLHALMIYI 416 (447)
Q Consensus 384 ~La~~y~l~d~~~--~~~~~~pf~~~G~nsLt~Yl 416 (447)
+....|.+.|... +.+...-|+-.-.|-+..+.
T Consensus 343 f~lt~y~lfd~ts~~yn~v~~~fes~n~n~llvfs 377 (429)
T COG5062 343 FHLTVYELFDRTSKIYNLVMHRFESKNLNFLLVFS 377 (429)
T ss_pred HHhheeeeeecccchhhhHHHHHHhcccchHHHHH
Confidence 3344456666421 23344444444444444443
No 15
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=94.41 E-value=7.2 Score=40.36 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=47.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhccCCccccccCCCC--cchhHHHHHHHHHHHHHHHHHHHhhccCCchhh--hHHHH
Q 013227 51 HQQRRLISLDVFRGLTVALMILVDDVGGILPAINHSPW--NGLTLADFVMPFFLFIVGVSLALTYKNFPCKVV--ATRKA 126 (447)
Q Consensus 51 ~~~~Ri~slD~lRGlail~Milvn~~~~~~~~~~h~~w--~G~~~~Dlv~P~FlFl~G~s~~l~~~r~~~~~~--~~~~~ 126 (447)
..++|+.++|.+||+|.+..++.|......+ .+..+ .|..-.| +|..++|+-+.-.+.++.++.+ .....
T Consensus 10 ~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~--~~~g~~~~g~~gVd----iFFvlSGfli~~~~~~~~~~~~~~~~~F~ 83 (386)
T COG1835 10 SSGGRLPGLDGLRAIAALLVVLYHAGFQIGP--GPGGFVGRGVLGVD----LFFVLSGFLITRSLLRSAAAPVISLAAFL 83 (386)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHccccccC--CCCcccccccccee----EeeeccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 4467999999999999999999996532111 01111 1222334 5899999999998855443332 23334
Q ss_pred HHHHHHH
Q 013227 127 ILRALNL 133 (447)
Q Consensus 127 ~rR~~~L 133 (447)
.||...+
T Consensus 84 ~rR~~RI 90 (386)
T COG1835 84 ARRLRRI 90 (386)
T ss_pred HHHHHHH
Confidence 5555444
No 16
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=93.99 E-value=8.5 Score=39.64 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=35.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHhccCCccccccCCCCcc---hhHHHHHHHHHHHHHHHH
Q 013227 53 QRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNG---LTLADFVMPFFLFIVGVS 108 (447)
Q Consensus 53 ~~Ri~slD~lRGlail~Milvn~~~~~~~~~~h~~w~G---~~~~Dlv~P~FlFl~G~s 108 (447)
++|-..+|+.||+-|++.++-|......| |.- ....-.-+|+|.|++|+-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 57999999999999999999886542111 321 111122389999999974
No 17
>COG4763 Predicted membrane protein [Function unknown]
Probab=88.54 E-value=1 Score=45.32 Aligned_cols=46 Identities=35% Similarity=0.474 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCcchhhhHHHHhcHHHHHHHHHHhhhHHHHHhhhcc
Q 013227 383 VLLAGIYFMVDVQGHRRVTMVFEWMGLHALMIYILVACNILPVLLQGFY 431 (447)
Q Consensus 383 l~La~~y~l~d~~~~~~~~~pf~~~G~nsLt~Yll~~~~il~~~~~~~~ 431 (447)
+.+.++|.++..-+ .+....++++|+|+|.+|+.| .+...++.+..
T Consensus 274 V~l~~~~~l~~~fg-~~v~e~L~~iG~htl~IY~~h--~i~~slf~g~~ 319 (388)
T COG4763 274 VILKLFYQLEQRFG-MRVTELLNVIGSHTLAIYTTH--RILVSLFSGTL 319 (388)
T ss_pred HHHHHHHHHHHHcC-chHHHHHHHhccCceEEEeeh--hhHHHHHHHHH
Confidence 46778888888766 568899999999999999995 66666665543
No 18
>COG3936 Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]
Probab=67.82 E-value=79 Score=31.89 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=26.1
Q ss_pred hhHHHHhcHHHHHHHHHHhhhHHHHHhhhccccCCCcchhh
Q 013227 401 TMVFEWMGLHALMIYILVACNILPVLLQGFYWRQPQNNILR 441 (447)
Q Consensus 401 ~~pf~~~G~nsLt~Yll~~~~il~~~~~~~~~~~~~~~~~~ 441 (447)
-.|+...|.-|..+|++| ..+...+..+-...||+.++.
T Consensus 270 ~~pl~fisn~sf~IYLlH--~~ilv~~f~~~~~~~~i~~V~ 308 (349)
T COG3936 270 SKPLLFISNISFEIYLLH--MKILVAFFSFIGARGSIYIVY 308 (349)
T ss_pred CCchhHhHhhHHHHHHHH--HHHHHHHHHHHccCCccchHH
Confidence 357999999999999997 344433344445566665543
No 19
>PF15345 TMEM51: Transmembrane protein 51
Probab=59.28 E-value=6.7 Score=38.09 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013227 370 SLSYTCLTAGASGVLLAGIYFMVDVQGHR 398 (447)
Q Consensus 370 T~s~vl~t~G~~~l~La~~y~l~d~~~~~ 398 (447)
|..||++.+|+++++|++|.-+-|+++.+
T Consensus 59 SVAyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 59 SVAYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred EEEEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999888876543
No 20
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=40.09 E-value=3.3e+02 Score=25.75 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHHH
Q 013227 58 SLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRALNLFLLG 137 (447)
Q Consensus 58 slD~lRGlail~Milvn~~~~~~~~~~h~~w~G~~~~Dlv~P~FlFl~G~s~~l~~~r~~~~~~~~~~~~rR~~~L~llG 137 (447)
|-|.+.=+|++.|++=|......| ...| -..+..+.+|+|.|+..-++.... ..+|.++|.+. +|
T Consensus 2 s~~~LK~iA~i~M~iDHi~~~~~~---~~~~-~~~iGR~afPlF~f~~~eG~~~T~--------n~~kY~~RL~~---~a 66 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIGFLFFP---DGPW-LRIIGRIAFPLFAFLLVEGFFHTR--------NRKKYLLRLLI---FA 66 (219)
T ss_pred chhHHHHHHHHHHHHHhhcccccC---cchH-HHHhhHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHH---HH
Confidence 458888999999987774411111 1222 134668889999999988776522 24566666554 55
Q ss_pred HHHHh
Q 013227 138 IFLQG 142 (447)
Q Consensus 138 ~~~~~ 142 (447)
++-+.
T Consensus 67 lis~i 71 (219)
T PF05857_consen 67 LISQI 71 (219)
T ss_pred HHHHH
Confidence 55443
No 21
>PF07779 Cas1_AcylT: 10 TM Acyl Transferase domain found in Cas1p; InterPro: IPR012419 The members of this family are sequences that are similar to a region of Cas1p protein (Q8X227 from SWISSPROT). This is an O-acetyltransferase that in Cryptococcus neoformans var. neoformans was shown to be required for O-acetylation of its capsular polysaccharide []. The capsule is this organism's most obvious virulence factor [].
Probab=37.81 E-value=2e+02 Score=31.33 Aligned_cols=45 Identities=27% Similarity=0.396 Sum_probs=28.7
Q ss_pred hhhhHHHHhcHHHHHHHHHHhhhHHHHHhhhccccCCCcchhhhh
Q 013227 399 RVTMVFEWMGLHALMIYILVACNILPVLLQGFYWRQPQNNILRLI 443 (447)
Q Consensus 399 ~~~~pf~~~G~nsLt~Yll~~~~il~~~~~~~~~~~~~~~~~~~~ 443 (447)
+-..+|+++||.||-.|++|-|--+..=-.++..-.|.+..+|++
T Consensus 403 ~~s~~fawlGkiSLEtyI~QfHIWLaaD~kglLvLiPg~p~lN~~ 447 (488)
T PF07779_consen 403 RYSTFFAWLGKISLETYILQFHIWLAADTKGLLVLIPGYPWLNFM 447 (488)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhcCCCceEEEecCCCccHHH
Confidence 356789999999999999984433332122333334555555554
No 22
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=36.50 E-value=58 Score=30.79 Aligned_cols=20 Identities=25% Similarity=0.647 Sum_probs=18.1
Q ss_pred hhhhHHHHhcHHHHHHHHHH
Q 013227 399 RVTMVFEWMGLHALMIYILV 418 (447)
Q Consensus 399 ~~~~pf~~~G~nsLt~Yll~ 418 (447)
+..+++..+|++||.+|++|
T Consensus 202 ~~~~~l~~~G~~sL~iY~~h 221 (223)
T PF07786_consen 202 GLIRPLAFLGRHSLLIYLIH 221 (223)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 36689999999999999998
No 23
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=31.74 E-value=7.7e+02 Score=27.55 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH-hhhccc
Q 013227 342 NWIILSSCLIGLGLSL-DFVGMH 363 (447)
Q Consensus 342 ~l~~~G~~ll~lGl~l-~~~~~p 363 (447)
.+..+|+..++.|++- .++|.+
T Consensus 395 il~~~gi~sii~G~lyG~fFG~~ 417 (646)
T PRK05771 395 ILIYLGISTIIWGLLTGSFFGFS 417 (646)
T ss_pred HHHHHHHHHHHHHHHHHhHhcCc
Confidence 3457778777788764 455533
No 24
>COG3619 Predicted membrane protein [Function unknown]
Probab=30.21 E-value=2.6e+02 Score=27.26 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=38.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHHHHHHHhh
Q 013227 87 PWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRALNLFLLGIFLQGG 143 (447)
Q Consensus 87 ~w~G~~~~Dlv~P~FlFl~G~s~~l~~~r~~~~~~~~~~~~rR~~~L~llG~~~~~~ 143 (447)
+++.....+...|.+.|.+|..+.-.++|+..+ .....+.+...++.+++.....
T Consensus 52 ~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~~ 106 (226)
T COG3619 52 EGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLALG 106 (226)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHh
Confidence 344456678889999999998888888666544 3344566677777777766543
No 25
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=27.66 E-value=78 Score=23.22 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhccCCc
Q 013227 99 PFFLFIVGVSLALTYKNFPC 118 (447)
Q Consensus 99 P~FlFl~G~s~~l~~~r~~~ 118 (447)
|+|...+|.+.++..+++..
T Consensus 9 P~~av~iG~~ayyl~e~R~~ 28 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYENREG 28 (47)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999987643
No 26
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.86 E-value=2.3e+02 Score=24.11 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=15.5
Q ss_pred hhHHHHHH--HHHHHHHHHHHHHHh
Q 013227 309 GLLSSVMA--TVTCLIGLHFGHLIV 331 (447)
Q Consensus 309 glls~lpa--i~~~LlG~~~G~~l~ 331 (447)
++++++.+ ++..++|++.|+|+-
T Consensus 43 ~~~g~IG~~~v~pil~G~~lG~WLD 67 (100)
T TIGR02230 43 GMFGLIGWSVAIPTLLGVAVGIWLD 67 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 346777999999884
No 27
>COG3814 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.19 E-value=59 Score=29.25 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=11.7
Q ss_pred CCCCCCCChhhHHHHHH
Q 013227 47 TRPQHQQRRLISLDVFR 63 (447)
Q Consensus 47 ~~~~~~~~Ri~slD~lR 63 (447)
++......-+.+||.+|
T Consensus 139 at~~~~~p~VvsLD~FR 155 (157)
T COG3814 139 ATSDSEGPNVVSLDAFR 155 (157)
T ss_pred ccCCCCCCcEEEhHHhh
Confidence 33333445899999999
No 28
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=22.69 E-value=1.2e+02 Score=29.93 Aligned_cols=86 Identities=20% Similarity=0.102 Sum_probs=51.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHhccCC--ccccccCCCCcchhHHHHH-HHHHHHHHHHHHHHhhccCCchh----hhHHHH
Q 013227 54 RRLISLDVFRGLTVALMILVDDVGG--ILPAINHSPWNGLTLADFV-MPFFLFIVGVSLALTYKNFPCKV----VATRKA 126 (447)
Q Consensus 54 ~Ri~slD~lRGlail~Milvn~~~~--~~~~~~h~~w~G~~~~Dlv-~P~FlFl~G~s~~l~~~r~~~~~----~~~~~~ 126 (447)
.|-.+-|..+|..+..|.+||.... .+|. .+..-++.-..+.+ .-.|-++-|+...+.....+... ...+++
T Consensus 72 ~~~~~~~~~~~~~L~~~flvHYf~R~liypf-~~~~~~~~p~~i~a~a~~F~~~NG~lqg~y~~~~~~~~d~~~~~~r~l 150 (257)
T KOG1638|consen 72 FRGPSSDLPPGLLLLSAFLVHYFHRALIYPF-LIRSSNPSPAIIVALAIAFCTLNGTLQGLYLSHYQLYEDPWVTDIRFL 150 (257)
T ss_pred cCCCcccccccHHHHHHHHHHHHHHHHhhee-eecCCCCccHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCchhHHHH
Confidence 3555666689999999999998754 4563 22222444344443 34577777887777665433311 122332
Q ss_pred HHHHHHHHHHHHHHHh
Q 013227 127 ILRALNLFLLGIFLQG 142 (447)
Q Consensus 127 ~rR~~~L~llG~~~~~ 142 (447)
=+..|++.|+++|.
T Consensus 151 --iG~~lfv~Gm~iN~ 164 (257)
T KOG1638|consen 151 --IGVVLFVTGMLINI 164 (257)
T ss_pred --HHHHHHHHHhhhhh
Confidence 26778888888764
No 29
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=22.60 E-value=4.2e+02 Score=21.48 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 013227 317 TVTCLIGLHFGHL 329 (447)
Q Consensus 317 i~~~LlG~~~G~~ 329 (447)
+.+..+|+.+.-+
T Consensus 21 ~vll~iGl~fta~ 33 (77)
T PF05251_consen 21 VVLLAIGLFFTAW 33 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455655544
Done!