Query 013227
Match_columns 447
No_of_seqs 176 out of 989
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 13.4 3.2E+02 0.011 26.2 6.6 57 337-396 276-337 (339)
2 2iub_A CORA, divalent cation t 8.9 2.4E+02 0.0083 27.4 3.9 26 337-362 300-325 (363)
3 3n2f_G Na+/K+ ATPase gamma sub 6.5 2.1E+02 0.0072 18.2 1.4 27 85-111 4-30 (31)
4 2jo1_A Phospholemman; FXYD1, N 5.5 5.6E+02 0.019 19.3 3.4 30 85-114 10-39 (72)
5 2zxe_G FXYD10, phospholemman-l 5.2 4.8E+02 0.016 19.9 2.9 31 84-114 12-42 (74)
6 2jp3_A FXYD domain-containing 4.7 5.4E+02 0.018 19.2 2.9 30 85-114 11-40 (67)
7 1p58_A Major envelope protein 3.7 1.5E+03 0.052 23.2 6.3 65 308-386 426-490 (495)
8 1mhy_G Methane monooxygenase h 3.0 4.6E+02 0.016 22.9 1.4 7 1-7 1-7 (169)
9 1qtx_B Protein (RS20); calmodu 2.9 5.7E+02 0.02 15.5 1.3 20 395-414 2-21 (26)
10 2klu_A T-cell surface glycopro 2.5 1.8E+03 0.062 16.4 4.7 21 374-394 12-32 (70)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=13.37 E-value=3.2e+02 Score=26.22 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcc-----cccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013227 337 RDRMLNWIILSSCLIGLGLSLDFVGM-----HLNKALYSLSYTCLTAGASGVLLAGIYFMVDVQG 396 (447)
Q Consensus 337 ~~~~~~l~~~G~~ll~lGl~l~~~~~-----pi~K~~~T~s~vl~t~G~~~l~La~~y~l~d~~~ 396 (447)
++.++.+-+++++++...++...+|+ |-.+.+ ..|..+.+ +..++..++|++..+++
T Consensus 276 N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~--~gy~~~l~-~m~~~~~~~~~~fkrk~ 337 (339)
T 4ev6_A 276 NQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNP--QGFWLVMA-LMVVIIMIFVYIFRRSG 337 (339)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCT--THHHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCc--hHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence 33455566666666667777676663 333333 34444433 33344445555555444
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=8.87 E-value=2.4e+02 Score=27.42 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013227 337 RDRMLNWIILSSCLIGLGLSLDFVGM 362 (447)
Q Consensus 337 ~~~~~~l~~~G~~ll~lGl~l~~~~~ 362 (447)
++.++.+-+++++++.+.++...+|+
T Consensus 300 N~imk~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 300 NEVMKVLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34455666777777777777776663
No 3
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=6.53 E-value=2.1e+02 Score=18.20 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=16.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHH
Q 013227 85 HSPWNGLTLADFVMPFFLFIVGVSLAL 111 (447)
Q Consensus 85 h~~w~G~~~~Dlv~P~FlFl~G~s~~l 111 (447)
+.+|+..-...+++-.-+|++|+.+.+
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iil 30 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIIL 30 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHT
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhc
Confidence 344554444555566777787777654
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=5.46 E-value=5.6e+02 Score=19.33 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=22.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 013227 85 HSPWNGLTLADFVMPFFLFIVGVSLALTYK 114 (447)
Q Consensus 85 h~~w~G~~~~Dlv~P~FlFl~G~s~~l~~~ 114 (447)
+.+|+-+-..-+++-..+|++|+.+.++-+
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 345654555667788999999999999983
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=5.21 E-value=4.8e+02 Score=19.88 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=23.5
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 013227 84 NHSPWNGLTLADFVMPFFLFIVGVSLALTYK 114 (447)
Q Consensus 84 ~h~~w~G~~~~Dlv~P~FlFl~G~s~~l~~~ 114 (447)
++..|+.+-..-++|-..+|++|+.+.++-+
T Consensus 12 F~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 12 FTYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp GCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 3445655555677788999999999999884
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=4.69 E-value=5.4e+02 Score=19.23 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=22.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 013227 85 HSPWNGLTLADFVMPFFLFIVGVSLALTYK 114 (447)
Q Consensus 85 h~~w~G~~~~Dlv~P~FlFl~G~s~~l~~~ 114 (447)
+..|+.+-..-+++-..+|++|+.+.++-+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 344544455567778999999999999873
No 7
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=3.69 E-value=1.5e+03 Score=23.20 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHH
Q 013227 308 EGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLTAGASGVLLA 386 (447)
Q Consensus 308 eglls~lpai~~~LlG~~~G~~l~~~~~~~~~~~~l~~~G~~ll~lGl~l~~~~~pi~K~~~T~s~vl~t~G~~~l~La 386 (447)
.|++.++-=.....+|..+..+|- ....+.+ +++|.++-++ .+|.+..|.+..++..|...+.|+
T Consensus 426 gg~f~sigKavh~vfg~~F~~lFG----G~sw~~k--------ilig~ll~Wl--G~n~rn~t~s~~~l~~G~ill~l~ 490 (495)
T 1p58_A 426 GGVFTSIGKALHQVFGAIYGAAFS----GVSWTMK--------ILIGVIITWI--GMNSRSTSLSVSLVLVGIVTLYLG 490 (495)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhc----chHHHHH--------HHHHHHHheE--EeccCCchHHHHHHHHHHHhheee
Confidence 467776654445555666554441 1111112 2345555554 569999999999998887655544
No 8
>1mhy_G Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.23.3.1 PDB: 1mhz_G
Probab=3.01 E-value=4.6e+02 Score=22.92 Aligned_cols=7 Identities=71% Similarity=0.980 Sum_probs=2.6
Q ss_pred CCcCCCC
Q 013227 1 MAKYNPI 7 (447)
Q Consensus 1 ~~~~~~~ 7 (447)
||||.||
T Consensus 1 m~~~~pi 7 (169)
T 1mhy_G 1 MAKREPI 7 (169)
T ss_dssp -CCCCCS
T ss_pred CCCcccc
Confidence 3444443
No 9
>1qtx_B Protein (RS20); calmodulin, calcium binding, helix-loop-helix, signaling, complex (calcium- binding protein/peptide), signaling protein; 1.65A {Escherichia coli} PDB: 1qs7_B* 1vrk_B*
Probab=2.95 E-value=5.7e+02 Score=15.46 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=13.8
Q ss_pred cCcchhhhHHHHhcHHHHHH
Q 013227 395 QGHRRVTMVFEWMGLHALMI 414 (447)
Q Consensus 395 ~~~~~~~~pf~~~G~nsLt~ 414 (447)
++|+|-...+..+|||+...
T Consensus 2 rkWqKtgnav~Al~Rm~~~~ 21 (26)
T 1qtx_B 2 RKWQKTGHAVRAIGRLSSSX 21 (26)
T ss_pred chHHHHhHHHHHHHHHHHhh
Confidence 45666667788888877654
No 10
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=2.52 E-value=1.8e+03 Score=16.37 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013227 374 TCLTAGASGVLLAGIYFMVDV 394 (447)
Q Consensus 374 vl~t~G~~~l~La~~y~l~d~ 394 (447)
+.+.+++++++++.+-+++-+
T Consensus 12 ivlGg~~~lll~~glcI~ccv 32 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhh
Confidence 455566666666666555444
Done!