Query 013227
Match_columns 447
No_of_seqs 176 out of 989
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 06:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013227.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013227hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4pa1 a.217.1.1 (A:8-60) Arg 17.8 15 0.0011 24.2 0.4 18 10-27 2-19 (53)
2 d1wmhb_ d.15.2.2 (B:) Partitio 8.3 37 0.0027 24.7 0.0 12 5-16 56-67 (82)
3 d2iuba2 f.17.3.1 (A:286-349) M 6.0 2.7E+02 0.02 18.1 3.9 24 338-361 4-27 (64)
4 d1q90m_ f.23.25.1 (M:) PetM su 4.3 3.5E+02 0.026 15.6 2.9 17 315-331 11-27 (34)
5 d1kcfa1 a.140.2.1 (A:3-38) Mit 4.3 1.2E+02 0.0089 17.7 0.7 16 11-26 21-36 (36)
6 d1jifa_ d.32.1.2 (A:) Bleomyci 3.6 98 0.0071 22.1 -0.2 11 430-440 106-116 (122)
7 d2axti1 f.23.37.1 (I:1-35) Pho 3.6 3.8E+02 0.028 15.8 2.6 25 412-437 6-30 (35)
8 d2glia1 g.37.1.1 (A:103-134) F 3.3 1.7E+02 0.012 17.2 0.7 14 7-20 11-24 (32)
9 d1jb0j_ f.23.18.1 (J:) Subunit 2.8 4E+02 0.029 16.3 2.2 21 311-331 8-28 (41)
10 d1f9za_ d.32.1.1 (A:) Glyoxala 2.0 1.7E+02 0.013 20.5 -0.5 15 430-444 111-125 (135)
No 1
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.83 E-value=15 Score=24.22 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.1
Q ss_pred chhhhhHHhhccCCCccc
Q 013227 10 DANDQLVIQISKSTSAPA 27 (447)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (447)
|.-+|+|+||.+|+..|.
T Consensus 2 ~tIeqlV~~ii~G~Lspk 19 (53)
T d1x4pa1 2 GTIDQLVKRVIEGSLSPK 19 (53)
T ss_dssp HHHHHHHHHHHHTCSCHH
T ss_pred chHHHHHHHHHcCCCCHH
Confidence 345899999999998876
No 2
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.26 E-value=37 Score=24.70 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=8.1
Q ss_pred CCCCcchhhhhH
Q 013227 5 NPINNDANDQLV 16 (447)
Q Consensus 5 ~~~~~~~~~~~~ 16 (447)
=|||||-|=.-+
T Consensus 56 LPINNDdNf~kA 67 (82)
T d1wmhb_ 56 LPLTNDDSLHRA 67 (82)
T ss_dssp EECCSHHHHHHH
T ss_pred ccccCchHHHHH
Confidence 389999764433
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.05 E-value=2.7e+02 Score=18.14 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 013227 338 DRMLNWIILSSCLIGLGLSLDFVG 361 (447)
Q Consensus 338 ~~~~~l~~~G~~ll~lGl~l~~~~ 361 (447)
+.++.+-..+++++...++...+|
T Consensus 4 ~~mk~lT~it~iflP~t~i~gifG 27 (64)
T d2iuba2 4 EVMKVLTIIATIFMPLTFIAGIYG 27 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345556666666666666666555
No 4
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.34 E-value=3.5e+02 Score=15.55 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013227 315 MATVTCLIGLHFGHLIV 331 (447)
Q Consensus 315 pai~~~LlG~~~G~~l~ 331 (447)
..+++.++|+..|-.+.
T Consensus 11 tmig~tl~glaigfvll 27 (34)
T d1q90m_ 11 TMVGMTLVGLAIGFVLL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 34567777888776554
No 5
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=4.32 E-value=1.2e+02 Score=17.72 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=12.6
Q ss_pred hhhhhHHhhccCCCcc
Q 013227 11 ANDQLVIQISKSTSAP 26 (447)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (447)
-.|.+..||.+|+.+|
T Consensus 21 rkdellrrivdspiyp 36 (36)
T d1kcfa1 21 RKDELLRRIVDSPIYP 36 (36)
T ss_dssp CTTHHHHHHHHCCCCC
T ss_pred cHHHHHHHHhcCCCCC
Confidence 4578889999987765
No 6
>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}
Probab=3.60 E-value=98 Score=22.08 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=4.5
Q ss_pred ccccCCCcchh
Q 013227 430 FYWRQPQNNIL 440 (447)
Q Consensus 430 ~~~~~~~~~~~ 440 (447)
+|.+||++|++
T Consensus 106 ~~~~DPdGn~i 116 (122)
T d1jifa_ 106 FAVRDPAGNCV 116 (122)
T ss_dssp EEEECTTCCEE
T ss_pred EEEECCCCCEE
Confidence 33444444443
No 7
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.55 E-value=3.8e+02 Score=15.79 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=15.1
Q ss_pred HHHHHHHhhhHHHHHhhhccccCCCc
Q 013227 412 LMIYILVACNILPVLLQGFYWRQPQN 437 (447)
Q Consensus 412 Lt~Yll~~~~il~~~~~~~~~~~~~~ 437 (447)
+++|... ...+..++.||.-+||.-
T Consensus 6 i~Vy~vV-~fFv~lFiFGFLSnDP~R 30 (35)
T d2axti1 6 ITVYIVV-TFFVLLFVFGFLSGDPAR 30 (35)
T ss_dssp HHHHHHH-HHHHHHHHHHHHTTCTTC
T ss_pred EehhhHH-HHHHHHHHHhhccCCCCC
Confidence 4566653 233445677888888863
No 8
>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.28 E-value=1.7e+02 Score=17.22 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=10.5
Q ss_pred CCcchhhhhHHhhc
Q 013227 7 INNDANDQLVIQIS 20 (447)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (447)
+.-|-|||||+-|.
T Consensus 11 ~eFdtQd~LV~Hin 24 (32)
T d2glia1 11 QEFDSQEQLVHHIN 24 (32)
T ss_dssp CBCSCHHHHHHHHH
T ss_pred cccCCHHHHHHHcc
Confidence 34578999999875
No 9
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=2.79 E-value=4e+02 Score=16.32 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013227 311 LSSVMATVTCLIGLHFGHLIV 331 (447)
Q Consensus 311 ls~lpai~~~LlG~~~G~~l~ 331 (447)
+|+-|.+++..++..+|-.++
T Consensus 8 lstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 8 LSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHH
No 10
>d1f9za_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Escherichia coli [TaxId: 562]}
Probab=2.03 E-value=1.7e+02 Score=20.49 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=0.0
Q ss_pred ccccCCCcchhhhhh
Q 013227 430 FYWRQPQNNILRLIG 444 (447)
Q Consensus 430 ~~~~~~~~~~~~~~~ 444 (447)
+|++||+++.+.+++
T Consensus 111 ~~~~DPdG~~iEl~q 125 (135)
T d1f9za_ 111 AFVEDPDGYKIELIE 125 (135)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEE
Done!