BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013228
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/441 (72%), Positives = 365/441 (82%), Gaps = 11/441 (2%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
M+ GV+SDDNN+QLEATT RKLLS RS P EEVI GVVPRFV+FL RED+PQLQFEA
Sbjct: 79 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 138
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE+TKVVIDHGAVPIFVKLL S SDD+REQAV ALGNVA DS +CRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 198
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
L+ AL+PLL QLN+H KLSMLR ATWTLSNFC GKP+P F+Q RPALPALA+L+HSND+
Sbjct: 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 258
Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL AL+TV NI GDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 318
Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
QTQCII+ ALP LL LL N KKSIK +ACWTISNITAGN + IQAVI+AG+IGPLVN
Sbjct: 319 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 378
Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
LLQ AEFDIK AA AISNAT GG+H+QIKYLV EGCIKPLCDLL+C D IVTV L+GL
Sbjct: 379 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438
Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420
E ILKVGE +K + A GDVN ++Q+++EAEGLEKIENL+SHDN+EI+EK+VKILE YW
Sbjct: 439 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496
Query: 421 GRVAGPQPGNEGEDALGSNVI 441
+E +D +G+ +
Sbjct: 497 ---------DEEDDTMGATTV 508
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/441 (72%), Positives = 365/441 (82%), Gaps = 11/441 (2%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
M+ GV+SDDNN+QLEATT RKLLS RS P EEVI GVVPRFV+FL RED+PQLQFEA
Sbjct: 41 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 100
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE+TKVVIDHGAVPIFVKLL S SDD+REQAV ALGNVA DS +CRDLV
Sbjct: 101 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 160
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
L+ AL+PLL QLN+H KLSMLR ATWTLSNFC GKP+P F+Q RPALPALA+L+HSND+
Sbjct: 161 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 220
Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL AL+TV NI GDD
Sbjct: 221 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 280
Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
QTQCII+ ALP LL LL N KKSIK +ACWTISNITAGN + IQAVI+AG+IGPLVN
Sbjct: 281 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 340
Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
LLQ AEFDIK AA AISNAT GG+H+QIKYLV EGCIKPLCDLL+C D IVTV L+GL
Sbjct: 341 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 400
Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420
E ILKVGE +K + A GDVN ++Q+++EAEGLEKIENL+SHDN+EI+EK+VKILE YW
Sbjct: 401 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 458
Query: 421 GRVAGPQPGNEGEDALGSNVI 441
+E +D +G+ +
Sbjct: 459 ---------DEEDDTMGATTV 470
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust.
Identities = 230/437 (52%), Positives = 290/437 (66%), Gaps = 14/437 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFE 59
M+ ++S QL AT RKLLS + P +EVI GVV RFVEFL R++ LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 60 AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
+AW L NI SG S T++VI GAVPIF++LL+S +D++EQAV ALGN+A DS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
VL L PLL +K +L+M R A W LSN C GK P P F +V P L L+ L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
D +V+ DAC AL YLS+G ND+IQAVI+AGVC RLVELL H V++ AL+ V NI G
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
DD QTQ I+NC AL L L+ + K+SIK +ACWTISNITAGN IQ VIDA + L
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
+++LQ AEF + AA AI+NAT GG+ EQIKYLV GCIKPLCDLL D +IV V L
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
GLE IL++GE E + G +N Y L+EEA GL+KIE L+SH+N EI++K+ ++E Y
Sbjct: 381 GLENILRLGEQEAKRN-GTG-INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 438
Query: 419 WCGRVAGPQPGNEGEDA 435
+ G E ED+
Sbjct: 439 F---------GTEDEDS 446
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust.
Identities = 230/437 (52%), Positives = 290/437 (66%), Gaps = 14/437 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFE 59
M+ ++S QL AT RKLLS + P +EVI GVV RFVEFL R++ LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 60 AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
+AW L NI SG S T++VI GAVPIF++LL+S +D++EQAV ALGN+A DS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
VL L PLL +K +L+M R A W LSN C GK P P F +V P L L+ L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
D +V+ DAC AL YLS+G ND+IQAVI+AGVC RLVELL H V++ AL+ V NI G
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
DD QTQ I+NC AL L L+ + K+SIK +ACWTISNITAGN IQ VIDA + L
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
+++LQ AEF + AA AI+NAT GG+ EQIKYLV GCIKPLCDLL D +IV V L
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
GLE IL++GE E + G +N Y L+EEA GL+KIE L+SH+N EI++K+ ++E Y
Sbjct: 384 GLENILRLGEQEAKRN-GTG-INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441
Query: 419 WCGRVAGPQPGNEGEDA 435
+ G E ED+
Sbjct: 442 F---------GTEDEDS 449
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/424 (53%), Positives = 289/424 (68%), Gaps = 11/424 (2%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT R++LS P + VI GVVPR VEF MRE+ P+ LQ E
Sbjct: 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 150
Query: 60 AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
AAWAL NI SGTS TKVV+D AVP+F++LL + S +++EQA+ ALGNVA DS RD
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSN 178
VL A+ P+L N + K S++R ATWTLSN C G KP+P + V ALP LA+L++S
Sbjct: 211 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
D E + DAC A+ YLS+G + IQAVI+ + RLVELL H S V T AL+ V NI G
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
+D QTQ +IN G LP L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PL
Sbjct: 330 NDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVF 356
V LL+ AE+ K A AISNA+ GG I+YLV +GCIKPLCDLL AD I+ V
Sbjct: 389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448
Query: 357 LKGLEKILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L LE ILK+GEA+K A G ++N+ A +E+A G+EKI N + ++ND+I+EK+ KI+
Sbjct: 449 LDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
Query: 416 ETYW 419
ETY+
Sbjct: 506 ETYF 509
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 4/196 (2%)
Query: 160 IFDQVRPALPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG 218
+ Q++ LP + Q ++S+D +E ++ + LS I VI+AGV PRLVE +
Sbjct: 81 FYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR 140
Query: 219 HPSPSVLT-RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277
P +L A + NIA+G QT+ +++ A+P + LL + +K A W + N
Sbjct: 141 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGN 199
Query: 278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGC 337
+ ++++ V+ + P++ L + + + A +SN G Q + V
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQA 258
Query: 338 IKPLCDLLLCADPEIV 353
+ L L+ D E +
Sbjct: 259 LPTLAKLIYSMDTETL 274
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/418 (54%), Positives = 287/418 (68%), Gaps = 11/418 (2%)
Query: 7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFEAAWALK 65
SDD QL AT R++LS P + VI GVVPR VEF MRE+ P+ LQ EAAWAL
Sbjct: 10 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 68
Query: 66 NIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125
NI SGTS TKVV+D AVP+F++LL + S +++EQA+ ALGNVA DS RD VL A
Sbjct: 69 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSNDKEVMT 184
+ P+L N + K S++R ATWTLSN C G KP+P + V ALP LA+L++S D E +
Sbjct: 129 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244
DAC A+ YLS+G + IQAVI+ + RLVELL H S V T AL+ V NI G+D QTQ
Sbjct: 188 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 247
Query: 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304
+IN G LP L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PLV LL+
Sbjct: 248 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 306
Query: 305 AEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362
AE+ K A AISNA+ GG I+YLV +GCIKPLCDLL AD I+ V L LE
Sbjct: 307 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 366
Query: 363 ILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
ILK+GEA+K A G ++N+ A +E+A G+EKI N + ++ND+I+EK+ KI+ETY+
Sbjct: 367 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
LP + Q ++S+D +E ++ + LS I VI+AGV PRLVE + P +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
A + NIA+G QT+ +++ A+P + LL + +K A W + N+ ++++
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
V+ + P++ L + + + A +SN G Q + V + L L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 178
Query: 346 LCADPE 351
D E
Sbjct: 179 YSMDTE 184
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/418 (53%), Positives = 287/418 (68%), Gaps = 11/418 (2%)
Query: 7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFEAAWALK 65
SDD QL AT R++LS P + VI GVVPR VEF MRE+ P+ LQ EAAWAL
Sbjct: 10 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 68
Query: 66 NIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125
NI SGTS TKVV+D AVP+F++LL + S +++EQA+ ALGNVA DS RD VL A
Sbjct: 69 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSNDKEVMT 184
+ P+L N + K S++R ATWTLSN C G KP+P + V ALP LA+L++S D E +
Sbjct: 129 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244
DAC A+ YLS+G + IQAVI+ + RLVELL H S V T AL+ V NI G+D QTQ
Sbjct: 188 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 247
Query: 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304
+IN G LP L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PLV LL+
Sbjct: 248 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 306
Query: 305 AEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362
AE+ K A AISNA+ GG I+YLV +GCIKPLCDLL AD I+ V L LE
Sbjct: 307 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 366
Query: 363 ILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
I+K+GEA+K A G ++N+ A +E+A G+EKI N + ++ND+I+EK+ KI+ETY+
Sbjct: 367 IIKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
LP + Q ++S+D +E ++ + LS I VI+AGV PRLVE + P +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
A + NIA+G QT+ +++ A+P + LL + +K A W + N+ ++++
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
V+ + P++ L + + + A +SN G Q + V + L L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 178
Query: 346 LCADPE 351
D E
Sbjct: 179 YSMDTE 184
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/418 (54%), Positives = 286/418 (68%), Gaps = 11/418 (2%)
Query: 7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFEAAWALK 65
SDD QL AT R++LS P + VI GVVPR VEF MRE+ P+ LQ EAAWAL
Sbjct: 12 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 70
Query: 66 NIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125
NI SGTS TKVV+D AVP+F++LL + S +++EQA+ ALGNVA DS RD VL A
Sbjct: 71 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSNDKEVMT 184
+ P+L N + K S++R ATWTLSN C G KP+P + V ALP LA+L++S D E +
Sbjct: 131 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244
DAC A+ YLS+G + IQAVI+ + RLVELL H S V T AL+ V NI G+D QTQ
Sbjct: 190 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 249
Query: 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304
+IN G LP L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PLV LL+
Sbjct: 250 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 308
Query: 305 AEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362
AE K A AISNA+ GG I+YLV +GCIKPLCDLL AD I+ V L LE
Sbjct: 309 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 368
Query: 363 ILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
ILK+GEA+K A G ++N+ A +E+A G+EKI N + ++ND+I+EK+ KI+ETY+
Sbjct: 369 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
LP + Q ++S+D +E ++ + LS I VI+AGV PRLVE + P +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
A + NIA+G QT+ +++ A+P + LL + +K A W + N+ ++++
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
V+ + P++ L + + + A +SN G Q + V + L L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 180
Query: 346 LCADPE 351
D E
Sbjct: 181 YSMDTE 186
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/418 (54%), Positives = 286/418 (68%), Gaps = 11/418 (2%)
Query: 7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFEAAWALK 65
SDD QL AT R++LS P + VI GVVPR VEF MRE+ P+ LQ EAAWAL
Sbjct: 12 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 70
Query: 66 NIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125
NI SGTS TKVV+D AVP+F++LL + S +++EQA+ ALGNVA DS RD VL A
Sbjct: 71 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSNDKEVMT 184
+ P+L N + K S++R ATWTLSN C G KP+P + V ALP LA+L++S D E +
Sbjct: 131 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244
DAC A+ YLS+G + IQAVI+ + RLVELL H S V T AL+ V NI G+D QTQ
Sbjct: 190 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 249
Query: 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304
+IN G LP L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PLV LL+
Sbjct: 250 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 308
Query: 305 AEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362
AE K A AISNA+ GG I+YLV +GCIKPLCDLL AD I+ V L LE
Sbjct: 309 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 368
Query: 363 ILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
ILK+GEA+K A G ++N+ A +E+A G+EKI N + ++ND+I+EK+ KI+ETY+
Sbjct: 369 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
LP + Q ++S+D +E ++ + LS I VI+AGV PRLVE + P +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
A + NIA+G QT+ +++ A+P + LL + +K A W + N+ ++++
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
V+ + P++ L + + + A +SN G Q + V + L L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 180
Query: 346 LCADPE 351
D E
Sbjct: 181 YSMDTE 186
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/424 (53%), Positives = 288/424 (67%), Gaps = 11/424 (2%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT R++LS P + VI GVVPR VEF MRE+ P+ LQ E
Sbjct: 5 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 60 AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
AAWAL NI SGTS TKVV+D AVP+F++LL + S +++EQA+ ALGNVA DS RD
Sbjct: 64 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSN 178
VL A+ P+L N + K S++R ATWTLSN C G KP+P + V ALP LA+L++S
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
D E + DAC A+ YLS+G + IQAVI+ + RLVELL H S V T AL+ V NI G
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
+D QTQ +IN G LP L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PL
Sbjct: 243 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVF 356
V LL+ AE K A AISNA+ GG I+YLV +GCIKPLCDLL AD I+ V
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 357 LKGLEKILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L LE ILK+GEA+K A G ++N+ A +E+A G+EKI N + ++ND+I+EK+ KI+
Sbjct: 362 LDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 416 ETYW 419
ETY+
Sbjct: 419 ETYF 422
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
LP + Q ++S+D +E ++ + LS I VI+AGV PRLVE + P +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
A + NIA+G QT+ +++ A+P + LL + +K A W + N+ ++++
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
V+ + P++ L + + + A +SN G Q + V + L L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 179
Query: 346 LCADPE 351
D E
Sbjct: 180 YSMDTE 185
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/424 (53%), Positives = 288/424 (67%), Gaps = 11/424 (2%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT R++LS P + VI GVVPR VEF MRE+ P+ LQ E
Sbjct: 5 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 60 AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
AAWAL NI SGTS TKVV+D AVP+F++LL + S +++EQA+ ALGNVA DS RD
Sbjct: 64 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSN 178
VL A+ P+L N + K S++R ATWTLSN C G KP+P + V ALP LA+L++S
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
D E + DAC A+ YLS+G + IQAVI+ + RLVELL H S V T AL+ V NI G
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
+D QTQ +IN G LP L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PL
Sbjct: 243 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVF 356
V LL+ AE K A AISNA+ GG I+YLV +GCIKPLCDLL AD I+ V
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 357 LKGLEKILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L LE ILK+GEA+K A G ++N+ A +E+A G+EKI N + ++ND+I+EK+ KI+
Sbjct: 362 LDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 416 ETYW 419
ETY+
Sbjct: 419 ETYF 422
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 4/188 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
LP + Q ++S+D +E ++ + LS I VI+AGV PRLVE + P +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
A + NIA+G QT+ +++ A+P + LL + +K A W + N+ ++++
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
V+ + P++ L + + + A +SN G Q + V + L L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 179
Query: 346 LCADPEIV 353
D E +
Sbjct: 180 YSMDTETL 187
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 340 bits (872), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 416 ETYW 419
E Y+
Sbjct: 423 EKYF 426
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 340 bits (872), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 187/425 (44%), Positives = 262/425 (61%), Gaps = 13/425 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 416 ETYWC 420
E Y+
Sbjct: 474 EKYFS 478
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 416 ETYW 419
E Y+
Sbjct: 430 EKYF 433
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/425 (44%), Positives = 262/425 (61%), Gaps = 13/425 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 416 ETYWC 420
E Y+
Sbjct: 474 EKYFS 478
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/425 (44%), Positives = 262/425 (61%), Gaps = 13/425 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 416 ETYWC 420
E Y+
Sbjct: 474 EKYFS 478
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/425 (44%), Positives = 262/425 (61%), Gaps = 13/425 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 407 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 416 ETYWC 420
E Y+
Sbjct: 460 EKYFS 464
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 405 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 416 ETYW 419
E Y+
Sbjct: 458 EKYF 461
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 416 ETYW 419
E Y+
Sbjct: 424 EKYF 427
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 416 ETYW 419
E Y+
Sbjct: 423 EKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 339 bits (870), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 416 ETYW 419
E Y+
Sbjct: 424 EKYF 427
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 416 ETYW 419
E Y+
Sbjct: 419 EKYF 422
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 416 ETYW 419
E Y+
Sbjct: 419 EKYF 422
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 38 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 397 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 416 ETYW 419
E Y+
Sbjct: 450 EKYF 453
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 416 ETYW 419
E Y+
Sbjct: 424 EKYF 427
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 337 bits (865), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 186/425 (43%), Positives = 261/425 (61%), Gaps = 13/425 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS + P + +I G++P+FV FL + D +QFE+
Sbjct: 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A + RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L LR TWTLSN C K P P D V LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV +L A+F + AA AI+N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 440 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 416 ETYWC 420
E Y+
Sbjct: 493 EKYFS 497
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 337 bits (864), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 186/424 (43%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S + QL+AT RKLLS + P + +I G++P+FV FL R D +QFE+
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
AWAL NI SGTSE TK V+D GA+P F+ LLASP I EQAV ALGN+A D + RDLV
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 121 LSEEALIPLLTQLNKHAKLSM----LRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
+ A+ PLL L S+ LR TWTLSN C K P P D V LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
H +D EV+ D C A+ YL++G N+ I V++ GV P+LV+LLG ++T AL+ + NI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
G D QTQ +I+ GAL LL N K +I+ +A WT+SNITAG + IQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
LV++L A+F + A A++N T GGT EQI YLV G I+PL +LL D +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
L + I + E +G+ + + ++EE GL+KIE L++H+N+ +++ S+ ++
Sbjct: 372 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 416 ETYW 419
E Y+
Sbjct: 425 EKYF 428
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 139/249 (55%), Gaps = 15/249 (6%)
Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
LP + Q ++S+D + A R + N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
AL + NIA+G + Q Q +I+ GALP L+ LL + + I +A W +SNI +G +E IQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347
AVIDAG + LV LL + I A A+SN GG +EQI+ ++ G + L LL
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS 191
Query: 348 ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEI 407
+ +I+ L L I G N+ Q V+EA LEK+E L+SH+N++I
Sbjct: 192 PNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKI 238
Query: 408 HEKSVKILE 416
+++ + LE
Sbjct: 239 QKEAQEALE 247
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 127/226 (56%), Gaps = 3/226 (1%)
Query: 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100
+P+ + L +D Q Q A I+S +E + VID GA+P V+LL+SP++ I +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160
+A+ AL N+A+ V+ AL P L QL +L+ A W LSN +G + I
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 161 FDQVRP-ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH 219
+ ALPAL QL+ S +++++ +A AL ++ G N++IQAVI+AG P LV+LL
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 220 PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKK 265
P+ +L AL + NIA+G + Q Q + GAL L L H ++K
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 237
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 118/197 (59%), Gaps = 2/197 (1%)
Query: 167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
ALPAL QL+ S +++++ +A AL ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI 286
AL + NIA+G + Q Q +I+ GALP L+ LL + + I +A W +SNI +G +E I
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 173
Query: 287 QAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL 346
QAVIDAG + LV LL + I A A+SN GG +EQ + + G ++ L L
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 232
Query: 347 CADPEIVTVFLKGLEKI 363
+ +I + LEK+
Sbjct: 233 HENEKIQKEAQEALEKL 249
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 122/223 (54%), Gaps = 4/223 (1%)
Query: 7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
SDD QL AT ++LS+ + VI G +P V+ L + LQ EA WAL N
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNE-QIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSN 80
Query: 67 IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
I SG +E + VID GA+P V+LL+SP++ I ++A+ AL N+A+ V+ AL
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140
Query: 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRP-ALPALAQLVHSNDKEVMTD 185
P L QL +L+ A W LSN +G + I + ALPAL QL+ S +++++ +
Sbjct: 141 -PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199
Query: 186 ACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRA 228
A AL ++ G N++ QAV EAG +L +L H + + A
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 114/197 (57%), Gaps = 4/197 (2%)
Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
LP + Q ++S D++ + A R L ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
AL + NIA+G + Q Q +I+ GALP L+ LL +++ I +A W +SNI +G +E IQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347
AVIDAG + LV LL + I A A+SN GG + K V+E +P + L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 348 ADPE-IVTVFLKGLEKI 363
+ E I + LEKI
Sbjct: 191 SPNEKIQKEAQEALEKI 207
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
ALPAL QL+ S +++++ +A AL ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI 286
AL + NIA+G + Q Q +I+ GALP L+ LL +++ I +A W +SNI +G +E
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 287 QAVIDAG 293
QAV +AG
Sbjct: 174 QAVKEAG 180
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 107/196 (54%), Gaps = 3/196 (1%)
Query: 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100
+P+ V+ L D +LQ A L I SG +E + VID GA+P V+LL+SP++ I +
Sbjct: 14 LPQMVQQLNSPDQQELQS-ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160
+A+ AL N+A+ V+ AL P L QL +L+ A W LSN +G + I
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 161 FDQVRP-ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH 219
+ ALPAL QL+ S +++++ +A AL ++ G N++ QAV EAG P L +L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSS 191
Query: 220 PSPSVLTRALQTVVNI 235
P+ + A + + I
Sbjct: 192 PNEKIQKEAQEALEKI 207
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 7/182 (3%)
Query: 13 QLEATTHIRKL--LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSG 70
Q E + +RKL +++ + + VI G +P V+ L + LQ EA WAL NI SG
Sbjct: 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASG 84
Query: 71 TSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLL 130
+E + VID GA+P V+LL+SP++ I ++A+ AL N+A+ V+ AL P L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL-PAL 143
Query: 131 TQLNKHAKLSMLRIATWTLSNFCAG--KPKPIFDQVRPALPALAQLVHSNDKEVMTDACR 188
QL +L+ A W LSN +G + K + A PAL QL S ++++ +A
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG-AEPALEQLQSSPNEKIQKEAQE 202
Query: 189 AL 190
AL
Sbjct: 203 AL 204
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 115/196 (58%), Gaps = 2/196 (1%)
Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
LP + Q ++S D++ + A R L ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
AL + NIA+G + Q Q +I+ GALP L+ LL +++ I +A W +SNI +G +E IQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347
AVIDAG + LV LL + I A A+SN GG +EQ + + G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 348 ADPEIVTVFLKGLEKI 363
+ +I + LEK+
Sbjct: 192 ENEKIQKEAQEALEKL 207
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKT 269
P++V+ L P L AL+ + IA+G + Q Q +I+ GALP L+ LL +++ I
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQ 72
Query: 270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI 329
+A W +SNI +G +E IQAVIDAG + LV LL + I A A+SN GG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 330 KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE 389
+ ++ G + L LL + +I+ L L I G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 390 AEGLEKIENLRSHDNDEIHEKSVKILE 416
A LEK+E L+SH+N++I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 2/177 (1%)
Query: 142 LRIATWTLSNFCAGKPKPIFDQVRP-ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200
L+ A LS +G + I + ALPAL QL+ S +++++ +A AL ++ G N++
Sbjct: 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
Query: 201 IQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI 260
IQAVI+AG P LV+LL P+ +L AL + NIA+G + Q Q +I+ GALP L+ LL
Sbjct: 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148
Query: 261 HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317
+++ I +A W +SNI +G +E QAV +AG + L L + I+ A A+
Sbjct: 149 SPNEQ-ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 13 QLEATTHIRKL--LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSG 70
Q E + +RKL +++ + + VI G +P V+ L + LQ EA WAL NI SG
Sbjct: 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASG 84
Query: 71 TSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLL 130
+E + VID GA+P V+LL+SP++ I ++A+ AL N+A+ V+ AL P L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL-PAL 143
Query: 131 TQLNKHAKLSMLRIATWTLSNFCAG--KPKPIFDQVRPALPALAQLVHSNDKEVMTDACR 188
QL +L+ A W LSN +G + K + AL L QL ++++ +A
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG-ALEKLEQLQSHENEKIQKEAQE 202
Query: 189 ALFYL 193
AL L
Sbjct: 203 ALEKL 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 111/196 (56%), Gaps = 2/196 (1%)
Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
LP + Q ++S+D + A R + N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
AL + NIA+G + Q Q +I+ GALP L+ LL +++ I +A W +SNI +G +E IQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347
AVIDAG + LV LL + I A A+SN GG +EQ + + G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 348 ADPEIVTVFLKGLEKI 363
+ +I + LEK+
Sbjct: 192 ENEKIQKEAQEALEKL 207
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
ALPAL QL+ S +++++ +A AL ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI 286
AL + NIA+G + Q Q +I+ GALP L+ LL +++ I +A W +SNI +G +E
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 287 QAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317
QAV +AG + L L + I+ A A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 15/207 (7%)
Query: 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKT 269
P++ + L A + I + + Q Q +I+ GALP L+ LL +++ I
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQ 72
Query: 270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI 329
+A W +SNI +G +E IQAVIDAG + LV LL + I A A+SN GG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 330 KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE 389
+ ++ G + L LL + +I+ L L I G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 390 AEGLEKIENLRSHDNDEIHEKSVKILE 416
A LEK+E L+SH+N++I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 3/189 (1%)
Query: 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100
+P+ + L +D Q Q A I+S +E + VID GA+P V+LL+SP++ I +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160
+A+ AL N+A+ V+ AL P L QL +L+ A W LSN +G + I
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 161 FDQVRP-ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH 219
+ ALPAL QL+ S +++++ +A AL ++ G N++ QAV EAG +L +L H
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 220 PSPSVLTRA 228
+ + A
Sbjct: 192 ENEKIQKEA 200
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 6/195 (3%)
Query: 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
M + SDD QL AT ++LS+ + VI G +P V+ L + LQ EA
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNE-QIQAVIDAGALPALVQLLSSPNEQILQ-EA 74
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
WAL NI SG +E + VID GA+P V+LL+SP++ I ++A+ AL N+A+ V
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG--KPKPIFDQVRPALPALAQLVHSN 178
+ AL P L QL +L+ A W LSN +G + K + AL L QL
Sbjct: 135 IDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG-ALEKLEQLQSHE 192
Query: 179 DKEVMTDACRALFYL 193
++++ +A AL L
Sbjct: 193 NEKIQKEAQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 124 EALIPLLT----QLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND 179
E L+ LLT + K A + IA+ S K I D + L +L+ S D
Sbjct: 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAI-----KAIVDA--GGVEVLVKLLTSTD 57
Query: 180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239
EV +A RAL ++ G ++ I+A+++AG LV+LL V A + + NIA+G
Sbjct: 58 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 117
Query: 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299
D + I++ G + L+ LL + ++ +A ++NI +G E I+A++DAG + LV
Sbjct: 118 DEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176
Query: 300 NLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKG 359
LL + + +++ AARA++N G T IK +V G ++ L LL D E+ +
Sbjct: 177 KLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235
Query: 360 LEKI 363
LE I
Sbjct: 236 LENI 239
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 125/276 (45%), Gaps = 45/276 (16%)
Query: 7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
S D+ Q EA + ++ S SA + ++ G V V+ L D ++Q EAA AL N
Sbjct: 13 STDSETQKEAARDLAEIASGPASA-IKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALAN 70
Query: 67 IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
I SG E K ++D G V + VKLL S +++++A AL N+A+ +EA+
Sbjct: 71 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG---------PDEAI 121
Query: 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDA 186
K I D + L +L+ S D EV +A
Sbjct: 122 -------------------------------KAIVDA--GGVEVLVKLLTSTDSEVQKEA 148
Query: 187 CRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI 246
RAL ++ G ++ I+A+++AG LV+LL V A + + NIA+G + I
Sbjct: 149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAI 208
Query: 247 INCGALPYLLGLLIHNHKKSIKTDACWTISNITAGN 282
++ G + L LL + ++ +A + NI +G
Sbjct: 209 VDAGGVEVLQKLLTSTDSE-VQKEAQRALENIKSGG 243
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 67 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 125
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 182
Query: 294 LIGPLVNLLQNAEFDIKNWAARAI 317
LVN+++ ++ W +
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRV 206
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 9/247 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 78 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 137 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 255 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310
Query: 299 VNLLQNA 305
V + A
Sbjct: 311 VRTVLRA 317
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 377 IRNLALCPANHAPLREQ---GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 433
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 434 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 248 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 306
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 307 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 363
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 364 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 403
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 59 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 117
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 118 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 174
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 175 GPQALVNIMRTYTYEKLLW 193
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 70 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 128
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 129 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 187
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 188 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 246
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 247 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 302
Query: 299 V 299
V
Sbjct: 303 V 303
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 369 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 425
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 426 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 240 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 298
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 299 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 355
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 356 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 395
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 68 NTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 126
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 127 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 183
Query: 294 LIGPLVNLLQNAEFDIKNWAARAI 317
LVN+++ ++ W +
Sbjct: 184 GPQALVNIMRTYTYEKLLWTTSRV 207
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 138 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 255
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 256 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
Query: 299 V 299
V
Sbjct: 312 V 312
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 378 IRNLALCPANHAPLREQ---GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 434
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 435 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 249 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 307
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 308 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 364
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 365 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 404
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 57 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 115
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 116 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 172
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 173 GPQALVNIMRTYTYEKLLW 191
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 68 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 126
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 127 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 185
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 186 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 244
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 245 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 300
Query: 299 V 299
V
Sbjct: 301 V 301
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 367 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 423
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 424 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 238 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 296
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 297 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 353
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 354 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 393
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 55 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 113
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 114 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 170
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 171 GPQALVNIMRTYTYEKLLW 189
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 124
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 125 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 184 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 242
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 243 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
Query: 299 V 299
V
Sbjct: 299 V 299
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 365 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 421
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 422 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 236 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 294
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 295 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 351
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 352 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 391
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 55 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 113
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 114 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 170
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 171 GPQALVNIMRTYTYEKLLW 189
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 124
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 125 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 184 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 242
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 243 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
Query: 299 V 299
V
Sbjct: 299 V 299
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 365 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 421
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 422 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 236 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 294
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 295 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 351
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 352 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 391
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 68 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 126
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 127 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 183
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 184 GPQALVNIMRTYTYEKLLW 202
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 138 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 255
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 256 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
Query: 299 V 299
V
Sbjct: 312 V 312
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 378 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 434
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 435 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 249 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 307
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 308 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 364
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 365 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 404
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 74 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 132
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 133 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 189
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 190 GPQALVNIMRTYTYEKLLW 208
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 85 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 143
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 144 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 202
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 203 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 261
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 262 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 317
Query: 299 V 299
V
Sbjct: 318 V 318
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 384 IRNLALCPANHAPLREQ---GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 440
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 441 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 255 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 313
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 314 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 370
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 371 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 410
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 72 NTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 130
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 131 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 187
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 188 GPQALVNIMRTYTYEKLLW 206
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 142 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 259
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 260 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 315
Query: 299 V 299
V
Sbjct: 316 V 316
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 382 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 438
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 439 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 253 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 311
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 312 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 368
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 369 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 408
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 73 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 131
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 132 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 188
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 189 GPQALVNIMRTYTYEKLLW 207
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 84 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 142
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 143 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 201
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 202 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 260
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 261 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 316
Query: 299 V 299
V
Sbjct: 317 V 317
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 383 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 439
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 440 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 254 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 312
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 313 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 369
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 370 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 409
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 72 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 130
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 131 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 187
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 188 GPQALVNIMRTYTYEKLLW 206
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 142 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 259
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 260 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 315
Query: 299 V 299
V
Sbjct: 316 V 316
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 382 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 438
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 439 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 253 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 311
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 312 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 368
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 369 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 408
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 71 NTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 129
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 130 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 186
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 187 GPQALVNIMRTYTYEKLLW 205
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 82 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 140
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 141 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 199
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 200 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 258
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 259 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 314
Query: 299 V 299
V
Sbjct: 315 V 315
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 381 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 437
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 438 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 252 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 310
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 311 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 367
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 368 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 407
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 174 LVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVV 233
+ ++ND E L LS + + A+ ++G P LV +LG P SVL A+ T+
Sbjct: 201 MQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259
Query: 234 NIAAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVID 291
N+ + + G L ++ LL + K +I TD C I + GN E ++
Sbjct: 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILA 316
Query: 292 AGLIGPLVNLLQNAEFDIKNWAARAI 317
+G LVN+++ ++ W +
Sbjct: 317 SGGPQALVNIMRTYTYEKLLWTTSRV 342
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 108/296 (36%), Gaps = 64/296 (21%)
Query: 68 VSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALI 127
+S E + G +P V +L SP D + A+ L N+ + V L
Sbjct: 220 LSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQ 279
Query: 128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDAC 187
++ LNK T F A + TD
Sbjct: 280 KMVALLNK------------TNVKFLA---------------------------ITTDCL 300
Query: 188 RALFYLSEGTNDEIQAVIEAGVCPR-LVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI 246
+ L Y N E + +I A P+ LV ++ + L V+ + + I
Sbjct: 301 QILAY----GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356
Query: 247 INCGALPYLLGLLIHNHKKSIKTDACWTISNIT--AGNSEHIQAVIDAGLIGPLVNLLQN 304
+ G + LGL + + + + + WT+ N++ A E ++ GL+G LV LL +
Sbjct: 357 VEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----GLLGTLVQLLGS 410
Query: 305 AEFDIKNWAARAISNAT------------FGGTHEQIKYLVREGCIKPLCDLLLCA 348
+ ++ AA +SN T GG ++ ++R G + + + +CA
Sbjct: 411 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 466
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 384 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 442
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R +D +++ A+ +P++ + L+
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 500 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 539
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 64/178 (35%), Gaps = 29/178 (16%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMR-EDYPQLQFEAAWALKNIVSGTSEDTKV 77
IR L L A AP E G +PR V+ L+R Q + + V G + V
Sbjct: 513 IRNLALCPANHAPLREQ---GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569
Query: 78 VIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA 137
GA+ I + DI + V N IPL QL
Sbjct: 570 EACTGALHILAR-------DIHNRIVIRGLNT-----------------IPLFVQLLYSP 605
Query: 138 KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE 195
++ R+A L K + A L +L+HS ++ V T A LF +SE
Sbjct: 606 IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 70 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L ++ LL + K +I TD C I + GN E ++ +G
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 185
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+++ ++ W
Sbjct: 186 GPQALVNIMRTYTYEKLLW 204
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
A L N+ S E + G +P VK+L SP D + A+ L N+ + V
Sbjct: 81 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP-ALAQLVHSND 179
L ++ LNK + L I T L G + + P AL ++ +
Sbjct: 140 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 180 KE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
E ++ R L LS ++++ A++EAG L L PS ++ L T+ N++
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
Q G L LLG + ++ T A +SN+T N ++ V G I L
Sbjct: 258 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313
Query: 299 V 299
V
Sbjct: 314 V 314
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF ++ IV
Sbjct: 380 IRNLALCPANHAPLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 437 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ +V G
Sbjct: 251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGG 309
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL-----IPLLTQ-LNK 135
+ V+ L A +DI E A+CAL ++ ++R ++ +++ A+ +P++ + L+
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHL---TSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366
Query: 136 HAKLSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+ +++ + N C P+ +Q A+P L QL+
Sbjct: 367 PSHWPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 406
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 111/269 (41%), Gaps = 42/269 (15%)
Query: 56 LQFEAAWALKNIVSGTSEDTKVVID-HGAVPIFVKLLASPSDDIREQAVCALGNVA---- 110
L+ A AL N+ G + + G + V L S S+D+++ L N++
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275
Query: 111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA 170
+S + V S +AL+ ++ K + L + A W LS C I A
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC----AVDGA 331
Query: 171 LAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ 230
LA LV + L Y S+ TN A+IE+G L+
Sbjct: 332 LAFLVGT------------LTYRSQ-TN--TLAIIESG-----------------GGILR 359
Query: 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI 290
V ++ A ++ Q + L LL L +H +I ++AC T+ N++A N + +A+
Sbjct: 360 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 418
Query: 291 DAGLIGPLVNLLQNAEFDIKNWAARAISN 319
D G + L NL+ + I +A A+ N
Sbjct: 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 282 NSEHIQAVIDAGLIGPLVNLLQ---------NAEFDI--KNWAARAISNATFGGTHEQIK 330
+ EH A+ + G + + LLQ N + I + +A A++N TFG +
Sbjct: 178 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 237
Query: 331 YLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEA 390
+GC++ L L ++ V L + A+ N + +V L+E A
Sbjct: 238 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNL--SWRADVNSKKTLREVGSVKALMECA 295
Query: 391 EGLEKIENLRS 401
++K L+S
Sbjct: 296 LEVKKESTLKS 306
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 124 EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKE 181
E + LL+ L H K M R TL + + I + LP L QL+H NDK+
Sbjct: 32 EMVYSLLSMLGTHDKDDMSR----TLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKD 85
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 111/269 (41%), Gaps = 42/269 (15%)
Query: 56 LQFEAAWALKNIVSGTSEDTKVVID-HGAVPIFVKLLASPSDDIREQAVCALGNVA---- 110
L+ A AL N+ G + + G + V L S S+D+++ L N++
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 161
Query: 111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA 170
+S + V S +AL+ ++ K + L + A W LS C I A
Sbjct: 162 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC----AVDGA 217
Query: 171 LAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ 230
LA LV + L Y S+ TN A+IE+G L+
Sbjct: 218 LAFLVGT------------LTYRSQ-TN--TLAIIESG-----------------GGILR 245
Query: 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI 290
V ++ A ++ Q + L LL L +H +I ++AC T+ N++A N + +A+
Sbjct: 246 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 304
Query: 291 DAGLIGPLVNLLQNAEFDIKNWAARAISN 319
D G + L NL+ + I +A A+ N
Sbjct: 305 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 333
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 282 NSEHIQAVIDAGLIGPLVNLLQ---------NAEFDI--KNWAARAISNATFGGTHEQIK 330
+ EH A+ + G + + LLQ N + I + +A A++N TFG +
Sbjct: 64 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 123
Query: 331 YLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEA 390
+GC++ L L ++ V L + A+ N + +V L+E A
Sbjct: 124 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNL--SWRADVNSKKTLREVGSVKALMECA 181
Query: 391 EGLEKIENLRS 401
++K L+S
Sbjct: 182 LEVKKESTLKS 192
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 111/269 (41%), Gaps = 42/269 (15%)
Query: 56 LQFEAAWALKNIVSGTSEDTKVVID-HGAVPIFVKLLASPSDDIREQAVCALGNVA---- 110
L+ A AL N+ G + + G + V L S S+D+++ L N++
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA 170
+S + V S +AL+ ++ K + L + A W LS C I A
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC----AVDGA 215
Query: 171 LAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ 230
LA LV + L Y S+ TN A+IE+G L+
Sbjct: 216 LAFLVGT------------LTYRSQ-TN--TLAIIESG-----------------GGILR 243
Query: 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI 290
V ++ A ++ Q + L LL L +H +I ++AC T+ N++A N + +A+
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302
Query: 291 DAGLIGPLVNLLQNAEFDIKNWAARAISN 319
D G + L NL+ + I +A A+ N
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 282 NSEHIQAVIDAGLIGPLVNLLQ---------NAEFDI--KNWAARAISNATFGGTHEQIK 330
+ EH A+ + G + + LLQ N + I + +A A++N TFG +
Sbjct: 62 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121
Query: 331 YLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEA 390
+GC++ L L ++ V L + A+ N + +V L+E A
Sbjct: 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNL--SWRADVNSKKTLREVGSVKALMECA 179
Query: 391 EGLEKIENLRS 401
++K L+S
Sbjct: 180 LEVKKESTLKS 190
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 42/269 (15%)
Query: 56 LQFEAAWALKNIVSG-TSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA---- 110
L+ A AL N+ G + + G V L S S+D+++ L N++
Sbjct: 109 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWRAD 168
Query: 111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA 170
+S + V S +AL ++ K + L + A W LS C I A
Sbjct: 169 VNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLSAHCTENKADIC----AVDGA 224
Query: 171 LAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ 230
LA LV + L Y S+ TN A+IE+G L+
Sbjct: 225 LAFLVGT------------LTYRSQ-TN--TLAIIESG-----------------GGILR 252
Query: 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI 290
V ++ A ++ Q + L LL L +H +I ++AC T+ N++A N + +A+
Sbjct: 253 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 311
Query: 291 DAGLIGPLVNLLQNAEFDIKNWAARAISN 319
D G + L NL+ + I +A A+ N
Sbjct: 312 DXGAVSXLKNLIHSKHKXIAXGSAAALRN 340
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 111/269 (41%), Gaps = 42/269 (15%)
Query: 56 LQFEAAWALKNIVSGTSEDTKVVID-HGAVPIFVKLLASPSDDIREQAVCALGNVA---- 110
L+ A AL N+ G + + G + V L S S+D+++ L N++
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA 170
+S + V S +AL+ ++ K + L + A W LS C I A
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC----AVDGA 215
Query: 171 LAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ 230
LA LV + L Y S+ TN A+IE+G L+
Sbjct: 216 LAFLVGT------------LTYRSQ-TN--TLAIIESG-----------------GGILR 243
Query: 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI 290
V ++ A ++ Q + L LL L +H +I ++AC T+ N++A N + +A+
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302
Query: 291 DAGLIGPLVNLLQNAEFDIKNWAARAISN 319
D G + L NL+ + I +A A+ N
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 282 NSEHIQAVIDAGLIGPLVNLLQ---------NAEFDI--KNWAARAISNATFGGTHEQIK 330
+ EH A+ + G + + LLQ N + I + +A A++N TFG +
Sbjct: 62 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121
Query: 331 YLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEA 390
+GC++ L L ++ V L + A+ N + +V L+E A
Sbjct: 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNL--SWRADVNSKKTLREVGSVKALMECA 179
Query: 391 EGLEKIENLRS 401
++K L+S
Sbjct: 180 LEVKKESTLKS 190
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 42/269 (15%)
Query: 56 LQFEAAWALKNIVSG-TSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA---- 110
L+ A AL N+ G + + G V L S S+D+++ L N++
Sbjct: 100 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA 170
+S + V S +AL ++ K + L + A W LS C I A
Sbjct: 160 VNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLSAHCTENKADIC----AVDGA 215
Query: 171 LAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ 230
LA LV + L Y S+ TN A+IE+G L+
Sbjct: 216 LAFLVGT------------LTYRSQ-TN--TLAIIESG-----------------GGILR 243
Query: 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI 290
V ++ A ++ Q + L LL L +H +I ++AC T+ N++A N + +A+
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302
Query: 291 DAGLIGPLVNLLQNAEFDIKNWAARAISN 319
D G + L NL+ + I +A A+ N
Sbjct: 303 DXGAVSXLKNLIHSKHKXIAXGSAAALRN 331
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV+ LG P SVL A+ T+ N+
Sbjct: 12 NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNL 70
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTISNITAGNSEHIQAVIDAG 293
+ + G L + LL + K +I TD C I + GN E ++ +G
Sbjct: 71 LLHQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTD-CLQI--LAYGNQESKLIILASG 127
Query: 294 LIGPLVNLLQNAEFDIKNW 312
LVN+ + ++ W
Sbjct: 128 GPQALVNIXRTYTYEKLLW 146
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDY----------PQLQFEAAWALKNIV 68
IR L L A AP E G +PR V+ L+R Q QF + IV
Sbjct: 322 IRNLALCPANHAPLREQ---GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIV 378
Query: 69 SGTS----------EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD 112
G + + V+ +P+FV+LL SP ++I+ A L +A D
Sbjct: 379 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Query: 24 LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83
L N A T++ G++ V+ L +D + AA L N+ ++ V G
Sbjct: 193 LRNLSDAATKQEGXEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKXXVCQVGG 251
Query: 84 VPIFVK--LLASPSDDIREQAVCALGNVAA---DSARCRDLVLSEEALIPLLTQLNKHAK 138
+ V+ L A +DI E A+CAL ++ + ++ ++ V L ++ L+ +
Sbjct: 252 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEXAQNAVRLHYGLPVVVKLLHPPSH 311
Query: 139 LSMLRIATWTLSN--FCAGKPKPIFDQVRPALPALAQLV 175
+++ + N C P+ +Q A+P L QL+
Sbjct: 312 WPLIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLL 348
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 256 LGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR 315
LGL + + + + + WT+ N++ ++ GL+G LV LL + + ++ AA
Sbjct: 174 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGX---EGLLGTLVQLLGSDDINVVTCAAG 230
Query: 316 AISNAT------------FGGTHEQIKYLVREGCIKPLCDLLLCA 348
+SN T GG ++ ++R G + + + +CA
Sbjct: 231 ILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAICA 275
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTD 185
+ +L+ N+ KL+ L NF + F V P LP + L+H D+ V
Sbjct: 149 FMSMLSSKNREDKLTAL--------NFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRAS 200
Query: 186 ACRALFYLSEGTNDEIQAVIEAGVCPRLVEL 216
A AL +L+ ND+++ V V RL EL
Sbjct: 201 AVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL---IPLLTQLNKHAKLS 140
+P LL S + E A AL + DSA D + + L IP Q KH+
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189
Query: 141 MLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200
+ A ++ F + + + + + L L + EV + CRAL L E D
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
Query: 201 I 201
+
Sbjct: 250 L 250
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLR 143
+P+ +LL ++E + LG +A + L E LIP L Q K +
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE--LIPHLIQCLSDKKALVRS 418
Query: 144 IATWTLSNFC---AGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200
I WTLS + +P + ++P + L + + ++K V AC A L E E
Sbjct: 419 ITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476
Query: 201 I 201
+
Sbjct: 477 L 477
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL---IPLLTQLNKHAKLS 140
+P LL S + E A AL + DSA D + + L IP Q KH+
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189
Query: 141 MLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200
+ A ++ F + + + + + L L + EV + CRAL L E D
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
Query: 201 I 201
+
Sbjct: 250 L 250
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLR 143
+P+ +LL ++E + LG +A + L E LIP L Q K +
Sbjct: 374 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE--LIPHLIQCLSDKKALVRS 431
Query: 144 IATWTLSNFC---AGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200
I WTLS + +P + ++P + L + + ++K V AC A
Sbjct: 432 ITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAF---------- 479
Query: 201 IQAVIEAGVCPRLVELLGH 219
A +E C LV L +
Sbjct: 480 --ATLEEEACTELVPYLAY 496
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL---IPLLTQLNKHAKLS 140
+P LL S + E A AL + DSA D + + L IP Q KH+
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189
Query: 141 MLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200
+ A ++ F + + + + + L L + EV + CRAL L E D
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
Query: 201 I 201
+
Sbjct: 250 L 250
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLR 143
+P+ +LL ++E + LG +A + L E LIP L Q K +
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE--LIPHLIQCLSDKKALVRS 456
Query: 144 IATWTLSNFC---AGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200
I WTLS + +P + ++P + L + + ++K V AC A
Sbjct: 457 ITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAF---------- 504
Query: 201 IQAVIEAGVCPRLVELLGH 219
A +E C LV L +
Sbjct: 505 --ATLEEEACTELVPYLAY 521
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 41 VPRFVEFLMREDYP--QLQFEAAWALKNIVSGTSEDTKVVIDH-GAVPIFVKLLASPSD- 96
+P V L D+P ++ A ALKNI G +D K+ I + VP V+LL D
Sbjct: 92 IPVLVGLL---DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM 148
Query: 97 DIREQAVCALGNVAADSARCRDLV------LSEEALIP 128
D+ E L N+++ + ++V L++E +IP
Sbjct: 149 DLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIP 186
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 211 PRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTD 270
P ++ +LG +V + A + ++ +D + +P L+GLL H KK +
Sbjct: 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLG 109
Query: 271 ACWTISNITAGNSEHIQ-AVIDAGLIGPLVNLLQNA-EFDIKNWAARAISNATFGGTHEQ 328
AC + NI+ G + + A+ + + LV LL+ A + D+ + N + +H+
Sbjct: 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLS---SHDS 166
Query: 329 IKYLVREGCIKPLCD 343
IK + + + L D
Sbjct: 167 IKMEIVDHALHALTD 181
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 30/161 (18%)
Query: 42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQ 101
P+ VE Q Q A N+ T+ V+ D +P+ + LL P+ D+R
Sbjct: 127 PKIVE--------QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Query: 102 AVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSML-----RIATWTLSNFCAG- 155
A A+ D++ RD + L N+ ++ + R LS C
Sbjct: 179 AAFAININKYDNSDIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232
Query: 156 KPKPIFDQV---------RPALPAL-AQLVHSNDKEVMTDA 186
K ++D + + LP L L +D E++T A
Sbjct: 233 KKNTVYDDIIEAAGELGDKTLLPVLDTXLYKFDDNEIITSA 273
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS 318
+N+ + I + D I L+NLL++ D++NWAA AI+
Sbjct: 142 TNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAIN 184
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 66 NTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 124
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTI 275
+ + G L ++ LL + K +I TD C I
Sbjct: 125 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI 165
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNV 109
A L N+ S E + G +P VK+L SP D + A+ L N+
Sbjct: 77 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 124
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 178 NDKEVMTDACRA--LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
N +V T C A L LS + + A+ ++G P LV++LG P SVL A+ T+ N+
Sbjct: 66 NTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 124
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKK--SIKTDACWTI 275
+ + G L ++ LL + K +I TD C I
Sbjct: 125 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQI 165
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNV 109
A L N+ S E + G +P VK+L SP D + A+ L N+
Sbjct: 77 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 124
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 17/252 (6%)
Query: 42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTS---EDTKVVIDHGAVPIFVKLLASPSDDI 98
P+ V ++R + A +I+ S E + G +P V++L+SP + +
Sbjct: 60 PQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESV 119
Query: 99 REQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158
A+ L N+ + V + L ++ LNK+ L I T L G +
Sbjct: 120 LFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNP-KFLAITTDCLQLLAYGNQE 178
Query: 159 PIFDQVRPALP-ALAQLVHSNDKE-VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL 216
+ P AL Q++ + E ++ R L LS +++ A++EAG L +
Sbjct: 179 SKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNK-PAIVEAGGMQALGKH 237
Query: 217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN---HKKSIKTDACW 273
L SP ++ L T+ N++ D T+ L +L +L++ ++ T A
Sbjct: 238 LTSNSPRLVQNCLWTLRNLS---DVATKQ----EGLESVLKILVNQLSVDDVNVLTCATG 290
Query: 274 TISNITAGNSEH 285
T+SN+T NS++
Sbjct: 291 TLSNLTCNNSKN 302
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 75/361 (20%), Positives = 137/361 (37%), Gaps = 78/361 (21%)
Query: 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSML 142
A+P KLL + +A + ++ A R L+ S + + ++ + + L
Sbjct: 20 ALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTA 79
Query: 143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ 202
R T L N L + EG +
Sbjct: 80 RCTTSILHN--------------------------------------LSHHREG----LL 97
Query: 203 AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN 262
A+ ++G P LV +L P SVL A+ T+ N+ + + L ++ LL N
Sbjct: 98 AIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKN 157
Query: 263 HKK--SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNW-AARAISN 319
+ K +I TD C + + GN E ++ G LV +++N ++ W +R +
Sbjct: 158 NPKFLAITTD-CLQL--LAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKV 214
Query: 320 ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL-------------KGLEKILKV 366
+ +++ +V G ++ L L P +V L +GLE +LK+
Sbjct: 215 LSVCPSNK--PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKI 272
Query: 367 GEAEKNMD------IAIGDVNQYA-------QLVEEAEGLEKIEN--LRSHDNDEIHEKS 411
+ ++D A G ++ LV + G+E + + LR+ D D+I E +
Sbjct: 273 LVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPA 332
Query: 412 V 412
V
Sbjct: 333 V 333
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 66/184 (35%), Gaps = 28/184 (15%)
Query: 20 IRKL-LSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVV 78
IR L L A AP +E V+PR V+ L++ + AA + G + V
Sbjct: 382 IRNLALCPANHAPLQEA---AVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVE 438
Query: 79 IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAK 138
GA+ I + D + + L IPL QL +
Sbjct: 439 GCTGALHILAR------DPMNRMEIFRLNT------------------IPLFVQLLYSSV 474
Query: 139 LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN 198
++ R+A L K A L +L+HS ++ T A LF +SE N
Sbjct: 475 ENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATYAAAVLFRISEDKN 534
Query: 199 DEIQ 202
+ +
Sbjct: 535 PDYR 538
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 19/139 (13%)
Query: 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLR 143
+P+ +LL ++E + LG +A + L E LIP L Q K +
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIPYLPE--LIPHLIQCLSDKKALVRS 456
Query: 144 IATWTLSNFC---AGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200
I WTLS + +P + ++P L + + ++K V AC A
Sbjct: 457 ITCWTLSRYAHWVVSQPPDTY--LKPLXTELLKRILDSNKRVQEAACSAF---------- 504
Query: 201 IQAVIEAGVCPRLVELLGH 219
A +E C LV L +
Sbjct: 505 --ATLEEEACTELVPYLAY 521
>pdb|4A8H|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8H|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8P|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
Length = 355
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 209 VCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCII---NCGALPYLLGLLIHNHKK 265
+ P ++L GH + +R L +V+I + I+ NC +P + G+ +NH
Sbjct: 73 LAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVINGMSDYNHPT 132
Query: 266 SIKTDACWTISNITAG 281
D C + ++ G
Sbjct: 133 QELGDLCTMVEHLPEG 148
>pdb|3TXX|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|G Chain G, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|H Chain H, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|I Chain I, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|J Chain J, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|K Chain K, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|L Chain L, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
Length = 359
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 209 VCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCII---NCGALPYLLGLLIHNHKK 265
+ P ++L GH + +R L +V+I + I+ NC +P + G+ +NH
Sbjct: 93 LAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVINGMSDYNHPT 152
Query: 266 SIKTDACWTISNITAG 281
D C + ++ G
Sbjct: 153 QELGDLCTMVEHLPEG 168
>pdb|4A8T|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis Lacking Its C-Terminal Helix, With
Bound N5-(Phosphonoacetyl)-L-Ornithine
Length = 339
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 209 VCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCII---NCGALPYLLGLLIHNHKK 265
+ P ++L GH + +R L +V+I + I+ NC +P + G+ +NH
Sbjct: 95 LAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVINGMSDYNHPT 154
Query: 266 SIKTDACWTISNITAG 281
D C + ++ G
Sbjct: 155 QELGDLCTMVEHLPEG 170
>pdb|4GMO|A Chain A, Crystal Structure Of Syo1
Length = 684
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 88 VKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQ 132
+K L SP R A A+ N+ D A+CR L+L E+ + +LT+
Sbjct: 40 LKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTE 83
>pdb|4GMN|A Chain A, Structural Basis Of Rpl5 Recognition By Syo1
Length = 676
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 88 VKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQ 132
+K L SP R A A+ N+ D A+CR L+L E+ + +LT+
Sbjct: 40 LKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTE 83
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 48 LMREDYPQLQFEAAWALKNIVSGTSEDTKVV-IDHGAVPIFVKLLASPSDDIREQAVCAL 106
++ D L++ A+ + +GT ++ V + H AV + +DD+R AV AL
Sbjct: 539 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIAL 591
Query: 107 GNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIAT-WTLSNFCAGK 156
G V +L + +P + QL + + +R T + L CAGK
Sbjct: 592 GFV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 632
>pdb|1VSY|4 Chain 4, Proteasome Activator Complex
pdb|1VSY|7 Chain 7, Proteasome Activator Complex
pdb|3L5Q|5 Chain 5, Proteasome Activator Complex
pdb|3L5Q|7 Chain 7, Proteasome Activator Complex
Length = 799
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 319 NATFGGTHEQIKY---LVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDI 375
+A H ++KY + G +C C + EIV +FL I+ +G KN DI
Sbjct: 301 HAFIKSYHGRVKYEEDICARGVTNGICLTSFCHE-EIVEIFLN----IISLGSQNKNPDI 355
Query: 376 AIGDVNQYAQLVE 388
A ++ +A L+E
Sbjct: 356 ANYYISCFAYLLE 368
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 49 MREDYPQLQFEAAWALKNIVSGTSEDTKVV-IDHGAVPIFVKLLASPSDDIREQAVCALG 107
+ D L++ A+ + +GT ++ V + H AV + +DD+R AV ALG
Sbjct: 551 LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIALG 603
Query: 108 NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIAT-WTLSNFCAGK 156
V +L + +P + QL + + +R T + L CAGK
Sbjct: 604 FV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 643
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,120,405
Number of Sequences: 62578
Number of extensions: 526547
Number of successful extensions: 1973
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1198
Number of HSP's gapped (non-prelim): 201
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)