Query 013228
Match_columns 447
No_of_seqs 333 out of 2288
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 01:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 9.1E-64 2E-68 449.1 45.0 440 2-446 72-513 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 6.1E-62 1.3E-66 405.5 32.8 439 4-445 79-524 (526)
3 KOG0166 Karyopherin (importin) 100.0 1.5E-45 3.2E-50 331.8 28.6 362 2-367 115-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 4.8E-45 1E-49 304.6 21.7 360 2-365 120-496 (526)
5 PLN03200 cellulose synthase-in 100.0 2.1E-39 4.6E-44 333.7 43.4 408 1-423 194-767 (2102)
6 PLN03200 cellulose synthase-in 100.0 4.7E-39 1E-43 331.2 44.1 411 1-422 409-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 1.6E-32 3.4E-37 231.8 26.5 398 5-439 135-541 (550)
8 KOG4224 Armadillo repeat prote 100.0 2E-32 4.2E-37 231.3 23.8 396 3-421 92-494 (550)
9 PF05804 KAP: Kinesin-associat 100.0 2.9E-26 6.3E-31 219.2 37.7 378 11-417 264-646 (708)
10 PF05804 KAP: Kinesin-associat 100.0 4.5E-25 9.8E-30 211.1 32.7 355 1-371 295-655 (708)
11 KOG1048 Neural adherens juncti 99.9 2.2E-20 4.8E-25 174.9 27.0 366 40-423 234-687 (717)
12 KOG0168 Putative ubiquitin fus 99.8 1.5E-18 3.3E-23 162.2 26.8 383 2-401 173-653 (1051)
13 KOG1048 Neural adherens juncti 99.8 8.5E-19 1.8E-23 164.4 24.0 357 2-366 239-685 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 1.3E-16 2.9E-21 151.8 34.7 368 41-421 40-421 (503)
15 PF10508 Proteasom_PSMB: Prote 99.8 3.5E-16 7.6E-21 148.9 36.4 394 2-419 44-461 (503)
16 KOG4199 Uncharacterized conser 99.8 6.9E-17 1.5E-21 136.2 26.8 311 6-323 117-445 (461)
17 KOG2122 Beta-catenin-binding p 99.8 2.6E-17 5.7E-22 161.4 26.4 350 14-367 212-603 (2195)
18 KOG4500 Rho/Rac GTPase guanine 99.8 2.6E-17 5.6E-22 143.2 21.9 358 5-369 51-435 (604)
19 KOG4199 Uncharacterized conser 99.8 5.4E-15 1.2E-19 124.9 28.1 319 37-364 102-443 (461)
20 KOG1222 Kinesin associated pro 99.8 2.5E-15 5.5E-20 132.8 27.1 375 11-415 278-658 (791)
21 KOG4500 Rho/Rac GTPase guanine 99.7 9.7E-15 2.1E-19 127.4 26.4 399 2-416 93-515 (604)
22 KOG1222 Kinesin associated pro 99.7 2.6E-14 5.7E-19 126.5 29.1 384 1-406 309-698 (791)
23 PRK09687 putative lyase; Provi 99.7 2.6E-15 5.6E-20 131.3 21.8 256 39-362 23-279 (280)
24 KOG2171 Karyopherin (importin) 99.7 7.2E-14 1.6E-18 136.4 32.4 356 2-369 124-508 (1075)
25 KOG1293 Proteins containing ar 99.7 5.2E-14 1.1E-18 129.3 28.2 402 4-421 17-534 (678)
26 PRK09687 putative lyase; Provi 99.7 3E-14 6.5E-19 124.6 23.0 255 82-417 23-279 (280)
27 PF04826 Arm_2: Armadillo-like 99.7 4.6E-14 1E-18 120.4 21.5 197 35-238 8-206 (254)
28 PF04826 Arm_2: Armadillo-like 99.6 1.6E-13 3.5E-18 117.1 23.0 238 165-411 11-253 (254)
29 PRK13800 putative oxidoreducta 99.6 2.3E-13 4.9E-18 139.1 28.0 269 2-361 627-895 (897)
30 PRK13800 putative oxidoreducta 99.6 4.1E-13 8.8E-18 137.3 29.6 277 38-417 620-896 (897)
31 KOG2122 Beta-catenin-binding p 99.6 5.9E-14 1.3E-18 138.5 21.9 362 43-422 201-603 (2195)
32 KOG2023 Nuclear transport rece 99.6 1.6E-13 3.5E-18 125.9 21.0 316 38-368 127-508 (885)
33 KOG2171 Karyopherin (importin) 99.6 5.4E-12 1.2E-16 123.6 32.7 357 3-369 166-553 (1075)
34 KOG1293 Proteins containing ar 99.6 6.1E-13 1.3E-17 122.4 24.6 356 10-369 67-537 (678)
35 PF01602 Adaptin_N: Adaptin N 99.6 8.4E-13 1.8E-17 129.1 22.5 352 4-422 87-446 (526)
36 cd00256 VATPase_H VATPase_H, r 99.5 4.4E-11 9.5E-16 108.9 29.5 321 82-419 53-424 (429)
37 KOG2023 Nuclear transport rece 99.5 8.6E-13 1.9E-17 121.3 18.4 321 82-421 128-506 (885)
38 cd00020 ARM Armadillo/beta-cat 99.5 4.5E-13 9.8E-18 103.1 14.5 119 34-154 2-120 (120)
39 PF01602 Adaptin_N: Adaptin N 99.5 3.9E-12 8.4E-17 124.5 23.6 324 2-369 48-373 (526)
40 cd00020 ARM Armadillo/beta-cat 99.5 1E-12 2.2E-17 101.2 14.3 117 204-321 3-119 (120)
41 cd00256 VATPase_H VATPase_H, r 99.5 2.8E-11 6.1E-16 110.2 24.7 312 8-322 66-425 (429)
42 PTZ00429 beta-adaptin; Provisi 99.4 9.7E-10 2.1E-14 108.0 34.1 366 2-421 74-472 (746)
43 PTZ00429 beta-adaptin; Provisi 99.4 1.9E-09 4.1E-14 106.0 33.2 362 4-423 113-510 (746)
44 KOG0168 Putative ubiquitin fus 99.4 1.2E-10 2.6E-15 110.3 23.6 337 2-346 217-653 (1051)
45 KOG1241 Karyopherin (importin) 99.4 3.5E-10 7.5E-15 106.1 24.6 355 8-369 186-588 (859)
46 KOG1241 Karyopherin (importin) 99.3 5.5E-10 1.2E-14 104.8 23.1 358 4-371 98-483 (859)
47 KOG2160 Armadillo/beta-catenin 99.3 3.6E-09 7.9E-14 91.9 22.5 188 178-367 95-284 (342)
48 KOG0946 ER-Golgi vesicle-tethe 99.2 5.5E-08 1.2E-12 92.0 31.2 327 39-371 22-405 (970)
49 KOG2759 Vacuolar H+-ATPase V1 99.2 2E-09 4.4E-14 94.7 20.4 309 10-322 80-438 (442)
50 KOG2759 Vacuolar H+-ATPase V1 99.2 3E-08 6.5E-13 87.5 27.5 322 83-420 66-438 (442)
51 KOG2160 Armadillo/beta-catenin 99.2 6.2E-09 1.3E-13 90.5 20.9 184 53-237 96-282 (342)
52 KOG1059 Vesicle coat complex A 99.2 1.5E-07 3.2E-12 88.4 29.4 214 2-238 150-366 (877)
53 KOG0213 Splicing factor 3b, su 99.2 1.7E-08 3.6E-13 94.8 22.9 382 3-421 723-1143(1172)
54 PF03224 V-ATPase_H_N: V-ATPas 99.1 2.4E-09 5.2E-14 96.5 16.3 227 84-313 57-305 (312)
55 PF03224 V-ATPase_H_N: V-ATPas 99.1 8.4E-09 1.8E-13 92.9 18.5 227 126-355 57-304 (312)
56 KOG0946 ER-Golgi vesicle-tethe 99.1 4.4E-07 9.6E-12 86.1 29.5 309 10-324 37-401 (970)
57 KOG1059 Vesicle coat complex A 99.1 2.9E-07 6.3E-12 86.5 27.3 275 39-345 144-422 (877)
58 KOG1062 Vesicle coat complex A 99.1 8.3E-08 1.8E-12 91.2 24.0 188 166-366 313-545 (866)
59 KOG1062 Vesicle coat complex A 99.1 3.2E-07 7E-12 87.3 26.7 361 5-419 116-494 (866)
60 KOG0212 Uncharacterized conser 99.0 1.5E-08 3.2E-13 92.3 16.0 315 37-369 82-410 (675)
61 KOG1242 Protein containing ada 99.0 2.6E-06 5.7E-11 79.4 28.8 343 40-420 97-444 (569)
62 COG5215 KAP95 Karyopherin (imp 98.9 9E-07 2E-11 81.2 23.5 351 8-367 190-587 (858)
63 COG5215 KAP95 Karyopherin (imp 98.9 1.2E-06 2.5E-11 80.5 22.9 343 8-364 340-710 (858)
64 KOG1061 Vesicle coat complex A 98.9 7.3E-07 1.6E-11 84.9 22.4 336 2-370 55-420 (734)
65 KOG1061 Vesicle coat complex A 98.9 2.8E-07 6.1E-12 87.7 19.4 293 5-323 95-416 (734)
66 KOG1789 Endocytosis protein RM 98.9 1.5E-05 3.3E-10 78.4 31.2 330 11-347 1740-2141(2235)
67 KOG0211 Protein phosphatase 2A 98.9 9E-07 2E-11 86.7 23.0 377 4-417 245-661 (759)
68 COG5181 HSH155 U2 snRNP splice 98.9 1.2E-06 2.7E-11 81.0 22.1 338 40-421 605-948 (975)
69 COG5369 Uncharacterized conser 98.8 3E-08 6.4E-13 89.9 11.4 308 101-418 408-739 (743)
70 KOG1517 Guanine nucleotide bin 98.8 4.2E-07 9.1E-12 88.8 18.5 234 12-247 486-742 (1387)
71 KOG0213 Splicing factor 3b, su 98.8 2.4E-06 5.2E-11 80.8 22.7 345 3-370 643-1029(1172)
72 KOG1517 Guanine nucleotide bin 98.8 4E-07 8.7E-12 88.9 17.9 252 41-296 474-748 (1387)
73 KOG3678 SARM protein (with ste 98.8 5.5E-07 1.2E-11 80.6 17.2 274 32-322 173-452 (832)
74 COG5369 Uncharacterized conser 98.8 1E-07 2.2E-12 86.5 11.6 286 32-320 424-739 (743)
75 KOG1824 TATA-binding protein-i 98.7 4E-06 8.7E-11 81.4 22.6 352 2-368 11-405 (1233)
76 KOG3678 SARM protein (with ste 98.7 2.8E-06 6.1E-11 76.2 19.8 240 164-418 178-450 (832)
77 KOG1058 Vesicle coat complex C 98.7 6.5E-06 1.4E-10 78.1 22.5 320 48-423 108-466 (948)
78 COG5181 HSH155 U2 snRNP splice 98.7 3.8E-07 8.1E-12 84.3 13.7 267 82-368 604-873 (975)
79 KOG0212 Uncharacterized conser 98.7 4.7E-06 1E-10 76.5 20.5 344 3-366 91-445 (675)
80 KOG1242 Protein containing ada 98.7 1.7E-05 3.8E-10 74.1 24.6 342 3-371 103-450 (569)
81 PF14664 RICTOR_N: Rapamycin-i 98.7 1.4E-05 3.1E-10 72.9 23.6 330 69-420 12-364 (371)
82 KOG1060 Vesicle coat complex A 98.7 1.9E-05 4.1E-10 75.4 24.6 62 211-281 290-351 (968)
83 KOG2973 Uncharacterized conser 98.7 1.6E-05 3.5E-10 67.7 21.7 272 84-366 5-316 (353)
84 KOG2973 Uncharacterized conser 98.7 5.7E-06 1.2E-10 70.4 19.0 270 1-280 8-315 (353)
85 KOG1824 TATA-binding protein-i 98.7 5.8E-06 1.3E-10 80.4 20.8 336 10-369 623-1040(1233)
86 KOG1060 Vesicle coat complex A 98.7 2.5E-05 5.4E-10 74.7 24.6 291 4-328 116-464 (968)
87 KOG4413 26S proteasome regulat 98.6 0.0003 6.5E-09 60.7 26.9 334 4-343 90-459 (524)
88 KOG4646 Uncharacterized conser 98.6 1.3E-06 2.8E-11 64.6 11.0 154 251-420 17-170 (173)
89 KOG1077 Vesicle coat complex A 98.6 0.00011 2.4E-09 69.6 25.9 348 41-421 113-489 (938)
90 PF05536 Neurochondrin: Neuroc 98.6 0.0002 4.3E-09 69.2 28.4 378 2-399 11-459 (543)
91 TIGR02270 conserved hypothetic 98.5 2.1E-05 4.5E-10 72.8 20.6 188 84-323 88-297 (410)
92 TIGR02270 conserved hypothetic 98.5 8.9E-05 1.9E-09 68.6 23.7 221 82-366 54-297 (410)
93 COG5231 VMA13 Vacuolar H+-ATPa 98.5 2.9E-05 6.4E-10 66.4 18.1 240 168-421 151-429 (432)
94 KOG0915 Uncharacterized conser 98.5 4.3E-05 9.4E-10 78.2 21.9 333 3-355 825-1191(1702)
95 KOG2259 Uncharacterized conser 98.5 1.6E-05 3.5E-10 74.5 17.4 220 129-366 203-440 (823)
96 KOG0915 Uncharacterized conser 98.4 8.5E-05 1.9E-09 76.2 23.4 344 13-371 938-1312(1702)
97 COG1413 FOG: HEAT repeat [Ener 98.4 0.00015 3.2E-09 66.6 23.1 244 3-323 50-305 (335)
98 KOG4646 Uncharacterized conser 98.4 4.1E-06 8.9E-11 62.0 9.7 115 39-156 16-130 (173)
99 KOG2259 Uncharacterized conser 98.4 1.5E-05 3.2E-10 74.7 15.5 252 86-360 202-470 (823)
100 PF14664 RICTOR_N: Rapamycin-i 98.3 8.5E-05 1.8E-09 67.9 19.2 339 18-367 5-366 (371)
101 PF00514 Arm: Armadillo/beta-c 98.3 1.3E-06 2.8E-11 52.0 4.9 41 71-111 1-41 (41)
102 COG1413 FOG: HEAT repeat [Ener 98.3 0.0002 4.3E-09 65.8 21.4 249 39-364 43-303 (335)
103 KOG4413 26S proteasome regulat 98.3 0.0018 3.9E-08 56.1 27.1 319 39-365 82-439 (524)
104 PF10165 Ric8: Guanine nucleot 98.3 0.00034 7.3E-09 66.2 22.8 255 29-284 12-341 (446)
105 KOG1240 Protein kinase contain 98.3 2.1E-05 4.5E-10 78.6 14.9 258 10-280 437-725 (1431)
106 KOG1789 Endocytosis protein RM 98.3 0.00058 1.3E-08 67.8 24.3 291 7-305 1783-2142(2235)
107 COG5231 VMA13 Vacuolar H+-ATPa 98.3 0.00012 2.5E-09 62.9 17.1 234 87-322 154-428 (432)
108 KOG1240 Protein kinase contain 98.3 8.6E-05 1.9E-09 74.4 18.6 296 84-420 424-725 (1431)
109 COG5240 SEC21 Vesicle coat com 98.3 0.0014 3E-08 61.1 24.9 350 8-419 202-554 (898)
110 KOG1077 Vesicle coat complex A 98.3 0.0022 4.8E-08 61.2 26.2 337 42-420 77-437 (938)
111 PF12348 CLASP_N: CLASP N term 98.2 3.8E-05 8.3E-10 66.2 14.3 189 6-202 17-213 (228)
112 KOG1943 Beta-tubulin folding c 98.2 0.0021 4.5E-08 64.3 26.0 231 82-322 341-611 (1133)
113 PF12460 MMS19_C: RNAPII trans 98.2 0.0062 1.3E-07 57.5 28.7 339 4-368 7-397 (415)
114 PF00514 Arm: Armadillo/beta-c 98.2 3.4E-06 7.4E-11 50.1 4.5 41 282-322 1-41 (41)
115 PF12348 CLASP_N: CLASP N term 98.2 3.4E-05 7.3E-10 66.5 12.5 187 217-420 16-206 (228)
116 COG5240 SEC21 Vesicle coat com 98.1 0.0004 8.6E-09 64.5 18.3 285 41-364 266-554 (898)
117 PF05536 Neurochondrin: Neuroc 98.1 0.00063 1.4E-08 65.8 20.8 237 83-322 6-261 (543)
118 PF12755 Vac14_Fab1_bd: Vacuol 98.1 3.2E-05 6.9E-10 55.6 8.4 94 268-365 3-96 (97)
119 PF13646 HEAT_2: HEAT repeats; 98.1 1.5E-05 3.2E-10 57.0 6.7 87 41-150 1-88 (88)
120 KOG2734 Uncharacterized conser 98.1 0.0024 5.3E-08 57.5 21.3 224 162-399 121-369 (536)
121 KOG0211 Protein phosphatase 2A 98.1 0.0018 3.8E-08 64.2 22.7 346 37-420 235-625 (759)
122 KOG1991 Nuclear transport rece 98.0 0.011 2.5E-07 58.8 26.9 342 14-368 390-760 (1010)
123 KOG2274 Predicted importin 9 [ 98.0 0.012 2.6E-07 58.0 26.5 306 6-324 460-782 (1005)
124 KOG2734 Uncharacterized conser 98.0 0.0042 9.1E-08 56.1 21.8 229 29-260 115-371 (536)
125 KOG2062 26S proteasome regulat 98.0 0.00044 9.5E-09 66.1 16.4 266 39-350 413-679 (929)
126 PF13646 HEAT_2: HEAT repeats; 98.0 2.6E-05 5.7E-10 55.8 6.6 87 168-276 1-88 (88)
127 PF13513 HEAT_EZ: HEAT-like re 98.0 1.7E-05 3.6E-10 50.8 4.7 55 265-320 1-55 (55)
128 KOG1991 Nuclear transport rece 97.9 0.019 4E-07 57.4 26.7 108 8-118 430-539 (1010)
129 COG5096 Vesicle coat complex, 97.9 0.011 2.4E-07 58.4 24.1 132 6-155 65-196 (757)
130 KOG1078 Vesicle coat complex C 97.9 0.0012 2.5E-08 63.8 17.0 280 42-364 248-531 (865)
131 KOG1078 Vesicle coat complex C 97.8 0.0033 7.1E-08 60.8 19.5 285 84-419 247-531 (865)
132 PF09759 Atx10homo_assoc: Spin 97.8 0.00017 3.6E-09 51.8 8.2 67 56-122 2-70 (102)
133 KOG1248 Uncharacterized conser 97.8 0.013 2.8E-07 59.6 23.9 237 128-369 657-902 (1176)
134 PF10165 Ric8: Guanine nucleot 97.8 0.0067 1.5E-07 57.5 21.2 262 61-323 2-338 (446)
135 PF13513 HEAT_EZ: HEAT-like re 97.7 4.5E-05 9.8E-10 48.8 3.9 55 139-193 1-55 (55)
136 KOG1967 DNA repair/transcripti 97.7 0.00049 1.1E-08 67.4 11.4 190 83-277 816-1021(1030)
137 smart00185 ARM Armadillo/beta- 97.7 0.00016 3.4E-09 42.9 5.3 39 72-110 2-40 (41)
138 KOG1058 Vesicle coat complex C 97.7 0.0077 1.7E-07 58.1 18.7 218 84-323 245-464 (948)
139 PF08569 Mo25: Mo25-like; Int 97.6 0.014 3E-07 52.7 19.6 203 202-417 70-280 (335)
140 KOG4535 HEAT and armadillo rep 97.6 0.00019 4.1E-09 65.1 7.7 275 4-280 303-603 (728)
141 KOG4535 HEAT and armadillo rep 97.6 0.0069 1.5E-07 55.4 17.4 405 4-421 55-560 (728)
142 COG5096 Vesicle coat complex, 97.6 0.043 9.4E-07 54.3 24.1 168 48-238 28-196 (757)
143 KOG4151 Myosin assembly protei 97.6 0.0011 2.3E-08 64.3 12.9 243 69-318 491-737 (748)
144 PF08569 Mo25: Mo25-like; Int 97.6 0.048 1E-06 49.2 22.6 225 165-403 75-313 (335)
145 PF05918 API5: Apoptosis inhib 97.6 0.038 8.3E-07 52.9 22.6 296 42-369 26-349 (556)
146 KOG1248 Uncharacterized conser 97.6 0.016 3.5E-07 59.0 20.5 242 45-291 659-910 (1176)
147 PF11841 DUF3361: Domain of un 97.5 0.005 1.1E-07 48.2 13.1 130 202-332 5-141 (160)
148 PF12460 MMS19_C: RNAPII trans 97.5 0.045 9.8E-07 51.7 22.4 300 9-324 56-396 (415)
149 PF09759 Atx10homo_assoc: Spin 97.5 0.00099 2.1E-08 47.9 8.5 68 224-291 2-70 (102)
150 KOG2274 Predicted importin 9 [ 97.5 0.032 6.9E-07 55.2 20.9 238 46-291 456-700 (1005)
151 PF12717 Cnd1: non-SMC mitotic 97.5 0.0085 1.8E-07 49.2 14.8 93 138-238 1-93 (178)
152 smart00185 ARM Armadillo/beta- 97.5 0.00037 8.1E-09 41.3 5.2 39 284-322 3-41 (41)
153 PF12717 Cnd1: non-SMC mitotic 97.5 0.01 2.2E-07 48.7 15.1 94 221-324 1-94 (178)
154 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.00083 1.8E-08 48.3 7.4 92 142-235 3-94 (97)
155 PF11841 DUF3361: Domain of un 97.4 0.014 2.9E-07 45.8 13.6 127 243-371 4-137 (160)
156 KOG1020 Sister chromatid cohes 97.3 0.31 6.7E-06 51.5 30.6 393 2-420 822-1254(1692)
157 KOG1943 Beta-tubulin folding c 97.3 0.25 5.4E-06 50.3 28.8 337 2-365 347-705 (1133)
158 KOG0414 Chromosome condensatio 97.3 0.0084 1.8E-07 60.8 14.8 149 161-325 914-1067(1251)
159 KOG3036 Protein involved in ce 97.3 0.027 5.8E-07 47.0 15.0 145 10-156 93-249 (293)
160 PF04078 Rcd1: Cell differenti 97.2 0.034 7.3E-07 47.4 15.3 187 179-368 8-221 (262)
161 KOG2025 Chromosome condensatio 97.2 0.079 1.7E-06 51.2 19.2 129 140-276 61-189 (892)
162 KOG0567 HEAT repeat-containing 97.2 0.11 2.5E-06 44.0 18.8 243 55-364 20-279 (289)
163 KOG4151 Myosin assembly protei 97.2 0.033 7.2E-07 54.4 17.0 220 117-344 497-720 (748)
164 PF05004 IFRD: Interferon-rela 97.2 0.043 9.3E-07 49.3 16.7 195 211-423 46-260 (309)
165 KOG4653 Uncharacterized conser 97.1 0.017 3.7E-07 56.7 14.8 226 42-278 730-962 (982)
166 PRK14707 hypothetical protein; 97.1 0.59 1.3E-05 51.3 28.4 355 41-416 165-525 (2710)
167 PF04078 Rcd1: Cell differenti 97.1 0.046 9.9E-07 46.6 15.3 195 221-422 8-220 (262)
168 COG5116 RPN2 26S proteasome re 97.1 0.029 6.3E-07 52.6 15.1 154 170-348 520-674 (926)
169 KOG2032 Uncharacterized conser 97.1 0.092 2E-06 48.6 17.9 269 81-365 253-531 (533)
170 PRK14707 hypothetical protein; 97.1 0.7 1.5E-05 50.7 28.2 388 8-419 177-570 (2710)
171 PF12719 Cnd3: Nuclear condens 97.1 0.03 6.6E-07 50.3 15.0 171 126-305 28-209 (298)
172 PF11698 V-ATPase_H_C: V-ATPas 97.1 0.0027 5.9E-08 46.9 6.7 70 337-419 44-114 (119)
173 PF05004 IFRD: Interferon-rela 97.0 0.19 4.1E-06 45.2 19.2 197 168-369 45-261 (309)
174 KOG2032 Uncharacterized conser 97.0 0.28 6.2E-06 45.5 19.8 114 165-280 257-371 (533)
175 PF06025 DUF913: Domain of Unk 96.9 0.047 1E-06 50.4 15.4 222 59-291 3-243 (379)
176 KOG2956 CLIP-associating prote 96.9 0.093 2E-06 48.2 16.6 174 97-280 302-477 (516)
177 KOG2062 26S proteasome regulat 96.9 0.23 5E-06 48.4 19.9 168 210-416 521-690 (929)
178 KOG4653 Uncharacterized conser 96.9 0.052 1.1E-06 53.6 15.6 223 86-319 731-961 (982)
179 KOG3036 Protein involved in ce 96.9 0.21 4.7E-06 41.9 20.0 141 226-369 97-251 (293)
180 KOG0567 HEAT repeat-containing 96.8 0.25 5.3E-06 42.1 17.8 241 10-321 19-279 (289)
181 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0024 5.1E-08 47.3 4.5 72 39-110 43-114 (119)
182 KOG0414 Chromosome condensatio 96.8 0.021 4.6E-07 58.1 12.4 160 83-262 920-1083(1251)
183 PF12719 Cnd3: Nuclear condens 96.8 0.084 1.8E-06 47.4 15.4 111 208-324 26-145 (298)
184 COG5656 SXM1 Importin, protein 96.8 0.58 1.3E-05 45.9 21.1 298 14-325 388-714 (970)
185 PF11701 UNC45-central: Myosin 96.7 0.02 4.3E-07 45.7 9.4 144 211-362 6-156 (157)
186 KOG1243 Protein kinase [Genera 96.6 0.2 4.3E-06 48.6 17.0 253 94-370 266-520 (690)
187 KOG1967 DNA repair/transcripti 96.6 0.021 4.5E-07 56.6 10.6 152 82-235 867-1022(1030)
188 PF08045 CDC14: Cell division 96.6 0.13 2.7E-06 44.3 14.2 108 309-430 107-217 (257)
189 PF05918 API5: Apoptosis inhib 96.5 0.31 6.8E-06 46.9 17.5 131 85-234 26-159 (556)
190 KOG1020 Sister chromatid cohes 96.4 0.08 1.7E-06 55.6 14.0 131 143-284 795-925 (1692)
191 KOG2956 CLIP-associating prote 96.4 0.39 8.4E-06 44.4 16.6 173 139-322 301-477 (516)
192 PF11701 UNC45-central: Myosin 96.4 0.036 7.8E-07 44.3 9.2 147 251-417 4-156 (157)
193 PF08045 CDC14: Cell division 96.3 0.087 1.9E-06 45.2 11.7 100 224-323 107-208 (257)
194 KOG1243 Protein kinase [Genera 96.3 0.098 2.1E-06 50.6 13.1 229 32-280 286-515 (690)
195 PF14668 RICTOR_V: Rapamycin-i 96.3 0.048 1E-06 36.6 7.9 66 268-336 4-70 (73)
196 PF13764 E3_UbLigase_R4: E3 ub 96.3 1 2.2E-05 45.8 20.5 210 79-303 114-360 (802)
197 PF13764 E3_UbLigase_R4: E3 ub 96.3 0.76 1.6E-05 46.6 19.5 211 120-345 113-359 (802)
198 PF07814 WAPL: Wings apart-lik 96.2 0.52 1.1E-05 43.6 17.2 275 41-324 23-357 (361)
199 PF02985 HEAT: HEAT repeat; I 96.1 0.0083 1.8E-07 32.8 3.1 28 84-111 2-29 (31)
200 PF07814 WAPL: Wings apart-lik 96.1 0.66 1.4E-05 42.9 17.1 275 84-368 23-358 (361)
201 PF02985 HEAT: HEAT repeat; I 96.1 0.012 2.7E-07 32.1 3.6 29 167-195 1-29 (31)
202 COG5098 Chromosome condensatio 96.0 0.23 5E-06 48.1 13.8 178 167-367 893-1078(1128)
203 PF06025 DUF913: Domain of Unk 95.9 1.1 2.4E-05 41.6 17.6 192 101-306 3-209 (379)
204 KOG3665 ZYG-1-like serine/thre 95.9 2.3 4.9E-05 43.0 22.7 175 231-419 494-696 (699)
205 KOG1820 Microtubule-associated 95.9 0.22 4.8E-06 50.3 13.9 196 85-289 256-453 (815)
206 PF11707 Npa1: Ribosome 60S bi 95.8 1.5 3.3E-05 40.0 22.4 171 244-425 51-242 (330)
207 KOG0413 Uncharacterized conser 95.7 2.9 6.3E-05 42.6 21.8 128 224-367 947-1075(1529)
208 KOG1566 Conserved protein Mo25 95.7 1.4 3E-05 38.7 16.6 204 118-325 73-289 (342)
209 PF11865 DUF3385: Domain of un 95.6 0.13 2.9E-06 41.1 9.3 147 39-194 10-156 (160)
210 PF11864 DUF3384: Domain of un 95.5 2.5 5.4E-05 40.7 27.6 252 10-280 43-330 (464)
211 PF08506 Cse1: Cse1; InterPro 95.4 0.68 1.5E-05 42.8 14.2 131 180-317 225-370 (370)
212 PF13251 DUF4042: Domain of un 95.4 0.51 1.1E-05 38.5 11.9 141 56-196 2-175 (182)
213 PF01603 B56: Protein phosphat 95.4 1.9 4.1E-05 40.7 17.4 261 15-288 109-378 (409)
214 COG5116 RPN2 26S proteasome re 95.3 0.23 5E-06 46.9 10.8 150 3-178 523-674 (926)
215 COG5098 Chromosome condensatio 95.3 0.11 2.3E-06 50.2 8.9 133 220-369 908-1041(1128)
216 KOG1820 Microtubule-associated 95.2 0.51 1.1E-05 47.9 13.7 189 169-367 256-445 (815)
217 KOG1949 Uncharacterized conser 95.2 2.1 4.5E-05 42.0 16.6 185 42-236 177-369 (1005)
218 PF11864 DUF3384: Domain of un 95.1 3.3 7.1E-05 39.9 23.1 290 10-322 4-330 (464)
219 KOG1949 Uncharacterized conser 95.1 0.81 1.7E-05 44.6 13.8 231 122-364 127-369 (1005)
220 PF10363 DUF2435: Protein of u 95.1 0.15 3.3E-06 36.2 7.1 73 167-241 4-76 (92)
221 KOG2999 Regulator of Rac1, req 95.0 2.3 5E-05 40.4 16.2 161 210-373 85-250 (713)
222 KOG1993 Nuclear transport rece 95.0 4.3 9.4E-05 40.5 22.8 341 11-366 502-865 (978)
223 PF14668 RICTOR_V: Rapamycin-i 94.9 0.14 3.1E-06 34.4 6.2 67 13-82 4-70 (73)
224 KOG1566 Conserved protein Mo25 94.9 2.5 5.4E-05 37.2 17.5 202 202-418 73-284 (342)
225 KOG3665 ZYG-1-like serine/thre 94.9 0.79 1.7E-05 46.2 14.0 193 105-317 494-692 (699)
226 PF06371 Drf_GBD: Diaphanous G 94.9 0.082 1.8E-06 43.8 6.3 96 15-110 83-186 (187)
227 KOG2999 Regulator of Rac1, req 94.8 2 4.4E-05 40.8 15.1 166 166-333 83-253 (713)
228 KOG0413 Uncharacterized conser 94.7 5.7 0.00012 40.6 18.7 129 96-237 945-1073(1529)
229 PF04063 DUF383: Domain of unk 94.7 0.5 1.1E-05 39.0 10.2 127 4-133 3-156 (192)
230 KOG2933 Uncharacterized conser 94.6 0.66 1.4E-05 40.5 10.9 146 165-323 87-235 (334)
231 PF04063 DUF383: Domain of unk 94.5 0.78 1.7E-05 37.9 10.9 114 217-334 4-142 (192)
232 COG5209 RCD1 Uncharacterized p 94.3 0.54 1.2E-05 38.9 9.2 105 10-116 114-223 (315)
233 KOG2025 Chromosome condensatio 94.3 6.1 0.00013 39.0 25.0 105 39-150 85-189 (892)
234 KOG1822 Uncharacterized conser 94.2 10 0.00022 42.0 20.3 229 85-322 879-1127(2067)
235 KOG2137 Protein kinase [Signal 94.2 1.8 4E-05 42.5 14.1 140 162-310 385-525 (700)
236 KOG2933 Uncharacterized conser 94.1 0.32 7E-06 42.4 8.0 145 126-280 90-234 (334)
237 COG5656 SXM1 Importin, protein 94.0 7 0.00015 38.8 27.8 281 81-370 407-716 (970)
238 PLN03076 ARF guanine nucleotid 94.0 8.4 0.00018 43.3 20.2 270 93-367 1148-1491(1780)
239 COG5209 RCD1 Uncharacterized p 93.9 0.76 1.6E-05 38.1 9.3 137 271-418 120-266 (315)
240 KOG2611 Neurochondrin/leucine- 93.9 5.7 0.00012 37.2 16.6 189 42-237 14-225 (698)
241 COG5218 YCG1 Chromosome conden 93.9 1.1 2.5E-05 42.7 11.6 128 141-275 67-194 (885)
242 PF11707 Npa1: Ribosome 60S bi 93.8 5.3 0.00011 36.5 22.8 158 210-367 58-239 (330)
243 PF14500 MMS19_N: Dos2-interac 93.7 4.5 9.8E-05 35.4 17.0 214 44-280 4-237 (262)
244 COG5218 YCG1 Chromosome conden 93.6 7.4 0.00016 37.5 20.2 107 39-155 91-197 (885)
245 PF06371 Drf_GBD: Diaphanous G 93.5 0.45 9.8E-06 39.3 8.1 110 40-153 67-186 (187)
246 KOG1525 Sister chromatid cohes 93.5 13 0.00027 40.3 19.7 148 208-366 259-406 (1266)
247 KOG1788 Uncharacterized conser 93.5 9 0.0002 39.8 17.5 394 5-420 476-937 (2799)
248 PF01603 B56: Protein phosphat 93.3 2.7 5.8E-05 39.7 13.6 230 1-244 138-377 (409)
249 PF12530 DUF3730: Protein of u 93.2 5.1 0.00011 34.5 19.3 202 41-262 2-215 (234)
250 PF13251 DUF4042: Domain of un 93.1 1.3 2.9E-05 36.1 9.8 110 171-281 45-175 (182)
251 cd03572 ENTH_epsin_related ENT 92.9 2.6 5.6E-05 31.8 10.2 99 306-422 14-121 (122)
252 PF08167 RIX1: rRNA processing 92.9 1.1 2.4E-05 36.1 9.1 112 208-323 25-144 (165)
253 KOG1832 HIV-1 Vpr-binding prot 92.9 4.8 0.0001 40.7 14.5 141 180-334 623-783 (1516)
254 KOG2229 Protein required for a 92.8 0.76 1.7E-05 42.9 8.7 169 232-431 3-174 (616)
255 PLN03076 ARF guanine nucleotid 92.8 20 0.00044 40.5 25.1 263 7-280 1148-1489(1780)
256 PF12830 Nipped-B_C: Sister ch 92.6 5.1 0.00011 33.1 12.8 141 3-156 15-169 (187)
257 PF11865 DUF3385: Domain of un 92.6 1.8 3.9E-05 34.7 9.8 148 164-321 8-156 (160)
258 PF10363 DUF2435: Protein of u 92.6 0.81 1.8E-05 32.6 6.9 72 210-284 5-76 (92)
259 cd03568 VHS_STAM VHS domain fa 92.4 1.1 2.4E-05 35.1 8.2 72 337-420 38-110 (144)
260 PF14500 MMS19_N: Dos2-interac 91.9 8.1 0.00018 33.9 19.1 224 86-326 3-241 (262)
261 KOG2137 Protein kinase [Signal 91.8 1.9 4E-05 42.4 10.3 134 81-221 388-521 (700)
262 cd03569 VHS_Hrs_Vps27p VHS dom 91.7 1.6 3.4E-05 34.2 8.2 73 337-421 42-115 (142)
263 cd03567 VHS_GGA VHS domain fam 91.3 1.9 4.2E-05 33.4 8.3 72 337-420 39-116 (139)
264 KOG2611 Neurochondrin/leucine- 91.2 13 0.00029 34.9 16.8 186 5-194 20-224 (698)
265 PF14225 MOR2-PAG1_C: Cell mor 91.0 10 0.00022 33.2 16.3 212 2-235 13-252 (262)
266 cd03561 VHS VHS domain family; 91.0 2.1 4.5E-05 33.1 8.3 72 337-420 38-112 (133)
267 cd03567 VHS_GGA VHS domain fam 90.8 2.2 4.7E-05 33.2 8.1 72 294-365 39-116 (139)
268 PF08324 PUL: PUL domain; Int 90.7 4.3 9.3E-05 35.8 11.3 144 55-200 78-236 (268)
269 PF12530 DUF3730: Protein of u 90.7 10 0.00022 32.7 18.4 140 168-323 2-152 (234)
270 KOG1525 Sister chromatid cohes 90.6 29 0.00062 37.7 24.2 72 250-323 259-330 (1266)
271 cd03568 VHS_STAM VHS domain fa 90.4 2.4 5.1E-05 33.2 8.1 72 294-365 38-110 (144)
272 KOG0891 DNA-dependent protein 90.3 2.2 4.8E-05 48.6 10.5 269 5-282 490-765 (2341)
273 KOG1988 Uncharacterized conser 90.2 15 0.00032 37.3 14.7 246 4-280 32-281 (970)
274 KOG1848 Uncharacterized conser 89.7 15 0.00033 39.3 15.0 98 93-195 853-958 (1610)
275 PF01347 Vitellogenin_N: Lipop 89.7 7.5 0.00016 39.2 13.3 162 83-272 432-614 (618)
276 PF12231 Rif1_N: Rap1-interact 89.4 18 0.00039 33.7 24.5 186 177-366 145-353 (372)
277 PF08506 Cse1: Cse1; InterPro 89.1 19 0.00041 33.5 20.3 133 264-415 224-370 (370)
278 PF14726 RTTN_N: Rotatin, an a 89.1 4.6 9.9E-05 29.1 8.0 69 335-417 29-97 (98)
279 PF14726 RTTN_N: Rotatin, an a 89.0 4.5 9.7E-05 29.1 7.9 92 11-105 2-94 (98)
280 PF12074 DUF3554: Domain of un 88.7 4.5 9.8E-05 37.2 10.1 218 36-261 19-255 (339)
281 PF03378 CAS_CSE1: CAS/CSE pro 88.6 18 0.00039 34.4 14.0 275 39-323 26-325 (435)
282 PF08167 RIX1: rRNA processing 88.5 2.9 6.4E-05 33.7 7.7 111 83-197 26-145 (165)
283 smart00638 LPD_N Lipoprotein N 88.4 29 0.00062 34.7 16.8 137 165-320 392-543 (574)
284 cd03569 VHS_Hrs_Vps27p VHS dom 88.2 4.3 9.4E-05 31.7 8.2 73 294-366 42-115 (142)
285 PF03378 CAS_CSE1: CAS/CSE pro 87.8 26 0.00056 33.4 17.8 263 94-367 42-326 (435)
286 cd03561 VHS VHS domain family; 87.8 7.9 0.00017 29.9 9.4 74 294-367 38-114 (133)
287 smart00288 VHS Domain present 87.8 4.1 8.8E-05 31.5 7.8 72 337-420 38-111 (133)
288 PF13001 Ecm29: Proteasome sta 87.3 19 0.00042 35.1 13.8 222 177-425 248-493 (501)
289 KOG4464 Signaling protein RIC- 87.3 24 0.00053 32.6 17.9 103 54-156 111-233 (532)
290 PF12031 DUF3518: Domain of un 87.3 2 4.3E-05 36.3 6.0 79 55-134 139-226 (257)
291 KOG1822 Uncharacterized conser 87.2 56 0.0012 36.8 17.5 231 40-279 877-1126(2067)
292 cd03572 ENTH_epsin_related ENT 86.9 11 0.00025 28.4 9.8 86 275-365 25-119 (122)
293 PF12830 Nipped-B_C: Sister ch 86.4 17 0.00037 30.0 12.8 71 40-116 9-79 (187)
294 PF10521 DUF2454: Protein of u 86.2 10 0.00022 33.8 10.5 72 208-279 119-202 (282)
295 KOG1832 HIV-1 Vpr-binding prot 86.1 44 0.00096 34.4 16.6 340 71-418 339-771 (1516)
296 PF12031 DUF3518: Domain of un 86.0 2.7 5.8E-05 35.6 6.1 84 10-95 138-229 (257)
297 PF00790 VHS: VHS domain; Int 85.9 4.8 0.0001 31.4 7.4 72 337-420 43-118 (140)
298 KOG0889 Histone acetyltransfer 85.6 53 0.0012 39.4 17.2 305 39-347 984-1329(3550)
299 PF01347 Vitellogenin_N: Lipop 84.5 48 0.001 33.5 21.6 197 83-315 396-615 (618)
300 PF06685 DUF1186: Protein of u 84.4 26 0.00057 30.3 11.9 81 38-132 72-161 (249)
301 PF10521 DUF2454: Protein of u 84.2 16 0.00034 32.6 10.7 70 40-110 120-202 (282)
302 KOG0891 DNA-dependent protein 84.0 20 0.00043 41.6 13.2 270 87-364 486-762 (2341)
303 smart00288 VHS Domain present 83.7 12 0.00027 28.8 8.6 72 294-365 38-111 (133)
304 COG5110 RPN1 26S proteasome re 83.5 45 0.00097 32.3 14.0 35 164-198 45-79 (881)
305 KOG1848 Uncharacterized conser 83.4 51 0.0011 35.7 14.8 234 176-419 852-1131(1610)
306 KOG0392 SNF2 family DNA-depend 83.0 39 0.00086 36.2 13.7 242 165-426 76-331 (1549)
307 cd00197 VHS_ENTH_ANTH VHS, ENT 82.9 9.5 0.00021 28.5 7.6 71 337-419 38-114 (115)
308 PF08324 PUL: PUL domain; Int 82.9 3.1 6.8E-05 36.7 5.8 133 178-312 122-264 (268)
309 PF13001 Ecm29: Proteasome sta 82.7 34 0.00073 33.5 13.1 173 93-280 248-443 (501)
310 PF04388 Hamartin: Hamartin pr 82.3 23 0.00051 35.9 12.1 81 95-175 81-161 (668)
311 PF06685 DUF1186: Protein of u 81.9 33 0.00072 29.7 13.3 130 205-340 70-201 (249)
312 PF00790 VHS: VHS domain; Int 81.8 17 0.00036 28.4 8.8 74 294-367 43-120 (140)
313 PF04821 TIMELESS: Timeless pr 81.4 14 0.00031 32.5 9.2 76 349-424 133-212 (266)
314 PF12726 SEN1_N: SEN1 N termin 80.7 42 0.0009 34.7 13.6 91 265-366 495-586 (727)
315 KOG0301 Phospholipase A2-activ 80.5 64 0.0014 32.0 16.6 160 54-218 558-726 (745)
316 smart00638 LPD_N Lipoprotein N 80.4 66 0.0014 32.1 21.1 134 126-278 395-543 (574)
317 KOG4464 Signaling protein RIC- 80.2 51 0.0011 30.6 19.1 154 128-281 49-232 (532)
318 KOG1992 Nuclear export recepto 78.8 81 0.0018 32.3 26.1 390 9-424 52-531 (960)
319 KOG1788 Uncharacterized conser 78.1 99 0.0021 32.8 15.1 249 84-345 468-783 (2799)
320 KOG1993 Nuclear transport rece 77.7 87 0.0019 32.0 23.4 315 36-364 485-811 (978)
321 KOG2038 CAATT-binding transcri 77.7 85 0.0018 31.9 18.1 105 40-155 305-410 (988)
322 PF04869 Uso1_p115_head: Uso1 77.3 56 0.0012 29.6 14.0 171 40-236 35-230 (312)
323 PF10274 ParcG: Parkin co-regu 76.9 40 0.00086 27.6 11.0 72 250-323 38-110 (183)
324 PF10274 ParcG: Parkin co-regu 76.7 40 0.00087 27.6 11.5 74 208-283 38-112 (183)
325 cd03565 VHS_Tom1 VHS domain fa 76.3 35 0.00075 26.7 10.8 72 337-420 39-115 (141)
326 PF12783 Sec7_N: Guanine nucle 76.0 28 0.00061 28.1 8.9 111 9-123 35-158 (168)
327 PF08767 CRM1_C: CRM1 C termin 75.5 64 0.0014 29.3 15.4 181 223-420 42-244 (319)
328 KOG0392 SNF2 family DNA-depend 75.1 45 0.00097 35.8 11.5 233 82-324 77-327 (1549)
329 smart00509 TFS2N Domain in the 74.5 20 0.00044 24.3 6.4 51 354-418 19-69 (75)
330 KOG2199 Signal transducing ada 74.2 30 0.00065 31.7 8.9 72 294-365 46-118 (462)
331 KOG2011 Sister chromatid cohes 74.0 1.2E+02 0.0025 32.4 14.1 137 264-422 300-437 (1048)
332 PF08389 Xpo1: Exportin 1-like 73.3 16 0.00034 28.5 6.7 125 141-275 4-148 (148)
333 PF12463 DUF3689: Protein of u 73.2 70 0.0015 28.7 14.3 79 292-370 94-178 (303)
334 PLN03205 ATR interacting prote 71.8 85 0.0018 29.1 11.7 160 165-325 322-519 (652)
335 PF04499 SAPS: SIT4 phosphatas 71.7 41 0.00088 32.5 10.0 84 284-367 53-150 (475)
336 PF12231 Rif1_N: Rap1-interact 71.1 91 0.002 29.1 24.5 221 138-367 59-305 (372)
337 KOG1410 Nuclear transport rece 70.6 1.2E+02 0.0026 30.4 17.9 305 84-419 7-333 (1082)
338 KOG2011 Sister chromatid cohes 70.4 1E+02 0.0023 32.7 12.8 136 217-364 296-434 (1048)
339 KOG2199 Signal transducing ada 70.2 22 0.00047 32.6 7.1 72 337-420 46-118 (462)
340 PF08711 Med26: TFIIS helical 69.2 25 0.00053 21.8 5.6 35 384-418 13-48 (53)
341 KOG2213 Apoptosis inhibitor 5/ 69.1 97 0.0021 28.7 12.7 141 221-367 37-182 (460)
342 cd00183 TFIIS_I N-terminal dom 69.1 32 0.00069 23.4 6.4 35 384-418 37-71 (76)
343 PF04388 Hamartin: Hamartin pr 68.9 1.3E+02 0.0027 30.8 13.1 63 221-283 81-143 (668)
344 cd08050 TAF6 TATA Binding Prot 67.9 55 0.0012 30.2 9.7 112 165-278 209-338 (343)
345 PF04499 SAPS: SIT4 phosphatas 67.7 1.2E+02 0.0027 29.3 12.7 76 326-401 52-128 (475)
346 PF09324 DUF1981: Domain of un 67.7 20 0.00043 25.1 5.3 66 248-318 15-84 (86)
347 KOG2005 26S proteasome regulat 66.3 1.5E+02 0.0032 29.7 16.4 249 41-325 454-707 (878)
348 KOG2005 26S proteasome regulat 65.8 1.5E+02 0.0033 29.7 15.3 245 38-294 47-314 (878)
349 PF08216 CTNNBL: Catenin-beta- 65.7 9.6 0.00021 27.9 3.4 43 57-100 63-105 (108)
350 KOG2676 Uncharacterized conser 65.4 11 0.00023 34.0 4.3 64 60-123 376-441 (478)
351 KOG1410 Nuclear transport rece 65.3 1.6E+02 0.0034 29.7 19.8 99 202-303 249-355 (1082)
352 KOG1087 Cytosolic sorting prot 65.2 31 0.00067 33.0 7.6 75 337-423 39-115 (470)
353 KOG2149 Uncharacterized conser 64.9 76 0.0017 29.4 9.6 115 251-368 59-173 (393)
354 PF09324 DUF1981: Domain of un 64.9 15 0.00033 25.7 4.3 69 122-190 15-83 (86)
355 cd03565 VHS_Tom1 VHS domain fa 64.8 66 0.0014 25.1 8.8 73 294-366 39-116 (141)
356 PF11791 Aconitase_B_N: Aconit 64.0 28 0.00061 27.2 5.8 47 308-366 78-124 (154)
357 PF08216 CTNNBL: Catenin-beta- 63.8 9.8 0.00021 27.8 3.2 42 312-355 65-106 (108)
358 PF11791 Aconitase_B_N: Aconit 63.7 49 0.0011 25.9 7.0 100 168-280 24-123 (154)
359 cd00197 VHS_ENTH_ANTH VHS, ENT 62.7 61 0.0013 24.1 9.2 69 294-362 38-112 (115)
360 KOG2038 CAATT-binding transcri 62.5 1.9E+02 0.0041 29.6 14.8 73 165-242 303-375 (988)
361 PRK09169 hypothetical protein; 62.3 3.2E+02 0.0069 32.2 26.8 25 49-74 216-240 (2316)
362 PF14225 MOR2-PAG1_C: Cell mor 62.2 1.1E+02 0.0024 26.9 16.7 169 95-279 75-253 (262)
363 PF09758 FPL: Uncharacterised 61.9 42 0.00091 26.4 6.5 123 71-193 15-147 (149)
364 PF12054 DUF3535: Domain of un 61.7 1.5E+02 0.0034 28.4 14.8 118 294-413 313-436 (441)
365 KOG2149 Uncharacterized conser 61.6 77 0.0017 29.4 9.0 114 126-240 60-173 (393)
366 cd08050 TAF6 TATA Binding Prot 61.1 1.4E+02 0.003 27.6 11.0 109 126-235 212-338 (343)
367 PF07539 DRIM: Down-regulated 59.6 66 0.0014 25.1 7.4 82 82-176 17-98 (141)
368 COG5537 IRR1 Cohesin [Cell div 59.2 1.9E+02 0.0041 28.6 12.7 106 213-323 280-387 (740)
369 PF09758 FPL: Uncharacterised 58.9 12 0.00025 29.4 3.1 125 239-363 15-147 (149)
370 PF12726 SEN1_N: SEN1 N termin 58.8 2.3E+02 0.005 29.4 26.8 112 296-422 444-555 (727)
371 PF12054 DUF3535: Domain of un 58.3 84 0.0018 30.1 9.3 78 11-93 102-179 (441)
372 PF01365 RYDR_ITPR: RIH domain 56.9 45 0.00098 28.0 6.7 120 243-368 36-172 (207)
373 PF04510 DUF577: Family of unk 56.5 1.1E+02 0.0023 24.8 12.1 154 253-420 6-164 (174)
374 PF06012 DUF908: Domain of Unk 54.5 69 0.0015 29.3 7.9 65 55-120 237-306 (329)
375 KOG1924 RhoA GTPase effector D 54.2 2.6E+02 0.0057 28.7 15.3 144 223-406 207-351 (1102)
376 COG5537 IRR1 Cohesin [Cell div 51.9 2.5E+02 0.0055 27.8 11.9 97 94-194 287-385 (740)
377 KOG4524 Uncharacterized conser 51.7 52 0.0011 34.2 6.9 96 164-261 801-900 (1014)
378 PF12074 DUF3554: Domain of un 51.3 2E+02 0.0043 26.4 17.0 193 124-324 22-237 (339)
379 KOG2073 SAP family cell cycle 51.3 1.7E+02 0.0036 30.6 10.4 62 284-345 181-248 (838)
380 KOG0803 Predicted E3 ubiquitin 51.2 3.9E+02 0.0084 29.8 15.3 111 210-322 43-153 (1312)
381 KOG1992 Nuclear export recepto 49.9 3.2E+02 0.0069 28.4 25.0 95 8-113 17-119 (960)
382 PF13925 Katanin_con80: con80 49.6 1.4E+02 0.003 24.1 8.4 73 122-195 26-98 (164)
383 PF08767 CRM1_C: CRM1 C termin 47.8 2.2E+02 0.0048 25.9 14.6 157 97-255 42-216 (319)
384 smart00802 UME Domain in UVSB 47.4 1.1E+02 0.0024 22.5 7.3 80 250-334 11-95 (107)
385 PF12463 DUF3689: Protein of u 47.0 2.2E+02 0.0047 25.7 12.4 127 203-330 4-180 (303)
386 KOG0803 Predicted E3 ubiquitin 46.9 4.5E+02 0.0098 29.3 15.3 102 2-110 47-152 (1312)
387 KOG1087 Cytosolic sorting prot 46.7 1.2E+02 0.0026 29.2 8.2 71 294-364 39-111 (470)
388 PF12783 Sec7_N: Guanine nucle 44.4 1.7E+02 0.0036 23.6 9.5 81 202-283 67-149 (168)
389 PF14663 RasGEF_N_2: Rapamycin 44.3 64 0.0014 24.1 5.0 37 83-120 9-45 (115)
390 PF08389 Xpo1: Exportin 1-like 44.2 75 0.0016 24.6 5.8 64 165-232 81-148 (148)
391 PF01417 ENTH: ENTH domain; I 44.0 1.4E+02 0.003 22.6 8.2 98 305-421 15-122 (125)
392 KOG2213 Apoptosis inhibitor 5/ 43.7 2.8E+02 0.006 25.9 20.0 250 96-365 38-314 (460)
393 PF11229 DUF3028: Protein of u 43.0 3.3E+02 0.0071 26.6 16.5 227 125-365 98-353 (589)
394 PF08713 DNA_alkylation: DNA a 42.1 86 0.0019 26.3 6.2 77 208-292 120-196 (213)
395 PF08713 DNA_alkylation: DNA a 41.9 2.1E+02 0.0045 23.9 12.6 141 42-207 54-196 (213)
396 PF04821 TIMELESS: Timeless pr 41.6 2.5E+02 0.0054 24.8 13.6 63 264-326 133-212 (266)
397 PF12765 Cohesin_HEAT: HEAT re 41.2 56 0.0012 19.1 3.4 26 165-190 17-42 (42)
398 PF07923 N1221: N1221-like pro 41.1 36 0.00078 30.5 3.8 80 291-370 58-170 (293)
399 KOG2549 Transcription initiati 40.9 3.6E+02 0.0078 26.5 13.2 141 85-236 210-369 (576)
400 PF04869 Uso1_p115_head: Uso1 40.2 2.9E+02 0.0062 25.1 17.2 185 209-400 35-262 (312)
401 PF14663 RasGEF_N_2: Rapamycin 39.9 62 0.0013 24.2 4.3 39 40-80 9-47 (115)
402 PF06012 DUF908: Domain of Unk 38.5 96 0.0021 28.4 6.2 48 29-76 253-304 (329)
403 smart00567 EZ_HEAT E-Z type HE 38.4 37 0.00081 17.8 2.2 28 11-50 2-29 (30)
404 PF04064 DUF384: Domain of unk 38.0 1.1E+02 0.0024 19.6 6.1 44 383-426 11-55 (58)
405 PF12397 U3snoRNP10: U3 small 35.7 1.9E+02 0.0041 21.7 9.5 68 40-113 7-76 (121)
406 KOG2676 Uncharacterized conser 34.9 61 0.0013 29.5 4.0 61 228-289 376-438 (478)
407 PF08064 UME: UME (NUC010) dom 33.9 1.9E+02 0.0041 21.2 7.6 80 250-334 11-95 (107)
408 PF03130 HEAT_PBS: PBS lyase H 33.3 70 0.0015 16.4 2.7 26 141-176 1-26 (27)
409 cd06561 AlkD_like A new struct 32.6 2.3E+02 0.0049 23.3 7.2 74 211-291 108-181 (197)
410 PF04118 Dopey_N: Dopey, N-ter 32.1 3.9E+02 0.0084 24.2 13.3 111 127-238 57-168 (307)
411 KOG2152 Sister chromatid cohes 30.1 6.3E+02 0.014 26.0 10.3 63 113-176 364-426 (865)
412 PF14666 RICTOR_M: Rapamycin-i 29.9 3.6E+02 0.0078 23.1 13.7 128 265-419 78-224 (226)
413 TIGR03504 FimV_Cterm FimV C-te 29.2 1.1E+02 0.0024 18.2 3.3 28 390-417 16-43 (44)
414 PF01365 RYDR_ITPR: RIH domain 29.1 2.6E+02 0.0057 23.4 7.0 94 223-322 76-169 (207)
415 PF06367 Drf_FH3: Diaphanous F 29.0 3.3E+02 0.0072 22.5 9.6 75 335-416 20-97 (197)
416 smart00802 UME Domain in UVSB 28.3 1.6E+02 0.0035 21.7 4.8 68 39-111 11-83 (107)
417 PF01465 GRIP: GRIP domain; I 28.3 1.4E+02 0.0031 17.9 4.1 33 212-244 11-43 (46)
418 PF14631 FancD2: Fanconi anaem 28.2 2.7E+02 0.0058 31.5 8.4 135 173-315 442-576 (1426)
419 KOG0301 Phospholipase A2-activ 28.0 6.5E+02 0.014 25.5 17.7 164 175-347 553-727 (745)
420 PF07539 DRIM: Down-regulated 27.5 1.3E+02 0.0028 23.5 4.4 37 384-420 10-46 (141)
421 PF07923 N1221: N1221-like pro 26.4 2.1E+02 0.0045 25.7 6.2 53 250-303 60-126 (293)
422 KOG4231 Intracellular membrane 26.0 1.3E+02 0.0028 29.0 4.8 69 210-279 330-398 (763)
423 KOG0889 Histone acetyltransfer 25.6 1.4E+03 0.031 28.8 14.0 176 123-301 1125-1327(3550)
424 PF08623 TIP120: TATA-binding 25.4 3.3E+02 0.0071 22.1 6.4 76 180-260 41-116 (169)
425 PF11935 DUF3453: Domain of un 25.4 4.5E+02 0.0097 22.7 8.5 71 344-419 1-71 (239)
426 PF07571 DUF1546: Protein of u 24.4 2.7E+02 0.0057 19.8 5.9 57 137-193 18-76 (92)
427 PF10257 RAI16-like: Retinoic 24.4 5.8E+02 0.012 23.7 12.1 130 202-334 3-169 (353)
428 PF14631 FancD2: Fanconi anaem 24.1 4.8E+02 0.01 29.7 9.3 129 135-270 445-573 (1426)
429 KOG2312 Predicted transcriptio 24.1 6 0.00013 38.7 -4.0 124 218-345 45-170 (847)
430 PF08064 UME: UME (NUC010) dom 23.2 3.1E+02 0.0066 20.1 6.2 70 294-369 12-87 (107)
431 KOG2073 SAP family cell cycle 23.2 9.1E+02 0.02 25.6 16.2 176 165-348 189-377 (838)
432 KOG1851 Uncharacterized conser 22.0 1.2E+03 0.027 26.6 11.3 175 136-320 1498-1676(1710)
433 PF10257 RAI16-like: Retinoic 21.7 6.5E+02 0.014 23.3 12.7 139 118-258 3-180 (353)
434 PF12397 U3snoRNP10: U3 small 21.3 3.5E+02 0.0077 20.1 10.5 69 125-196 7-75 (121)
435 PF15573 Imm27: Immunity prote 21.0 2.7E+02 0.0059 23.6 5.2 76 40-136 47-123 (259)
436 PLN03205 ATR interacting prote 20.9 5E+02 0.011 24.4 7.2 112 209-321 324-445 (652)
437 PRK09169 hypothetical protein; 20.2 1.6E+03 0.034 27.2 27.4 96 41-139 165-262 (2316)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-64 Score=449.13 Aligned_cols=440 Identities=61% Similarity=0.900 Sum_probs=411.1
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
+..+.|+++..+..+...++++.+....++...++..|++|.++++|...+++.++..|+|+|.|+++++.+....++++
T Consensus 72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a 151 (514)
T KOG0166|consen 72 LAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA 151 (514)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC
Confidence 45678999999999999999999998788899999999999999999877669999999999999999999999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPI 160 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 160 (447)
|+++.++.++.+++..++++|+|+|+|++.+++.+|+.+...|++++|+.++..+....+.+++.|+|+|+|++. |.+.
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999966555689999999999999998 8888
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
...+..++|.|..++.+.|+++...++|++++++.++.+.++.+++.|+++.|+.+|.+.+..++..|+++++|++.+++
T Consensus 232 ~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 232 FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
.+++.+++.|+++.|..++...+...+|++|||+++|++.++.++++.+++.|++|.|++++++.+.++|++|+|+++|+
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ 391 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNL 391 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhh
Confidence 99999999999999999999553777999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh
Q 013228 321 TFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR 400 (447)
Q Consensus 321 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~ 400 (447)
+..+++++..+|++.|++++++.+|.-.|.++...++.++.++++.++...... . ++++..+++.||++.++.|+
T Consensus 392 ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggldkiE~LQ 466 (514)
T KOG0166|consen 392 TSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGLDKIENLQ 466 (514)
T ss_pred cccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccChhHHHHhh
Confidence 999999999999999999999999999999999999999999999999876431 1 78999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCCCCCCCC-CCcccCCCCCCCCcc
Q 013228 401 SHDNDEIHEKSVKILETYWCGRVAGPQPGNE-GEDALGSNVITDGKV 446 (447)
Q Consensus 401 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 446 (447)
+|.+++++++|..++++||..+++++..+-+ ..|.++++.++.||-
T Consensus 467 ~hen~~Iy~~A~~II~~yf~~e~~~~~~~~~~~~~~~~~~~~~~~f~ 513 (514)
T KOG0166|consen 467 SHENEEIYKKAYKIIDTYFSEEDDEDDQQPTTSQFTFQVQAPDGGFN 513 (514)
T ss_pred ccccHHHHHHHHHHHHHhcCCCcccccccccccccccCCCCCCCCCC
Confidence 9999999999999999999998766644322 678888885555553
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.1e-62 Score=405.54 Aligned_cols=439 Identities=52% Similarity=0.781 Sum_probs=409.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 83 (447)
-|.|+|-+.+..|..-++++++.+..++++.+++.|++|.++++|.+....-.+.+|+|+|.|+++++......++++|+
T Consensus 79 ~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~A 158 (526)
T COG5064 79 QLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGA 158 (526)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCc
Confidence 46789999999999999999999989999999999999999999955443688999999999999999999999999999
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHhcCCC-CCCCh
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNFCAGK-PKPIF 161 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~ 161 (447)
+|.++++|.+++.+++++++|+|+|++.+++.+|+.+++.|++.+++.++..+. +..+.+++.|.|+|||+.. |.+..
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 999999999999999999999999999999999999999999999999995433 4689999999999999998 78888
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
..+...+|.|.+++.+.|+++...|+|+++.++..+.+..+.+++.|+.+.|+.+|.+++..++..+++.++|+..+++.
T Consensus 239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~ 318 (526)
T COG5064 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDD 318 (526)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~ 321 (447)
+.+.+++.|+++.+..+|.++ ...+|+++||+++|+..++.++++.+++.+++|.|+.+|.+.+..++++|||++.|..
T Consensus 319 QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 319 QTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred ceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999 8899999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH
Q 013228 322 FGG--THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL 399 (447)
Q Consensus 322 ~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l 399 (447)
..+ .|+..+++.++|++++|+.+|.-.+..+.+.++.++.++++.++..+.... -+.|.|...+++.||++.+..+
T Consensus 398 sgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Aggmd~I~~~ 475 (526)
T COG5064 398 SGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGGMDAIHGL 475 (526)
T ss_pred ccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcccHHHHHHh
Confidence 865 578899999999999999999999999999999999999999987765433 3566789999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC--CCCCCCCC-CCcccCCCCCCCCc
Q 013228 400 RSHDNDEIHEKSVKILETYWCGRV--AGPQPGNE-GEDALGSNVITDGK 445 (447)
Q Consensus 400 ~~~~~~~v~~~a~~~l~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 445 (447)
+++.+.+++.+|-.++++||.+++ ++=+|++. +-|-|++.+.+-|.
T Consensus 476 Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~~~~qg~ 524 (526)
T COG5064 476 QDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVNQQGN 524 (526)
T ss_pred hhccccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCCccccCC
Confidence 999999999999999999997766 33399999 99999999988774
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-45 Score=331.79 Aligned_cols=362 Identities=26% Similarity=0.396 Sum_probs=324.2
Q ss_pred ccccc-CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGVW-SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
|.+|. ++++.++++|+|+|.+++++. +++.+.+++.|++|.+++++.+++ .+++++|+|+|+|++.+++.+|+.+++
T Consensus 115 V~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~Rd~vl~ 192 (514)
T KOG0166|consen 115 VEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDCRDYVLS 192 (514)
T ss_pred HHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHHHHHHHh
Confidence 55665 456999999999999999997 888899999999999999999999 899999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 81 HGAVPIFVKLLASPSD-DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~-~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
.|++++|+.++..++. .+.++++|+|+|||++..+....-.-..+++.|..++ .+.|+++...++|++++|+.+.+..
T Consensus 193 ~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~ 271 (514)
T KOG0166|consen 193 CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEK 271 (514)
T ss_pred hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHH
Confidence 9999999999988665 7889999999999976522222222334688888888 8999999999999999999887443
Q ss_pred -ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhc
Q 013228 160 -IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 160 -~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~ 237 (447)
......+++|.|+.+|.+..+.++..|+++++|++.+++.+.+.+++.|+++.|..++. ++...+++.|+|+++|++.
T Consensus 272 iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 272 IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 33445899999999999999999999999999999999999999999999999999998 5677799999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHH
Q 013228 238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARA 316 (447)
Q Consensus 238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~a 316 (447)
++..+.+.+++.|++|.|+.+|.+. +.++|++|+|+++|++. ++++++.++++.|+++.++.+|...|.++...+..+
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999998 688999999999999999999998999999999999
Q ss_pred HHHhcCCCC-------HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 317 ISNATFGGT-------HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 317 L~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
|.++...+. ......+.+.|+++.+..+-.+++.++...|..++.+.+..+
T Consensus 431 l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 431 LENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999987442 233456677899999999999999999999999999998765
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.8e-45 Score=304.64 Aligned_cols=360 Identities=26% Similarity=0.349 Sum_probs=315.7
Q ss_pred cccc-cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGV-WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
|+++ .++....+++|+|+|.+++++. ..+.+.+++.|++|.++++|.+++ .+|+++++|+|+|++.+++.+|+.+.+
T Consensus 120 vefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~RD~vL~ 197 (526)
T COG5064 120 VEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGCRDYVLQ 197 (526)
T ss_pred HHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhHHHHHHh
Confidence 4556 5566789999999999999997 778888999999999999999999 899999999999999999999999999
Q ss_pred CCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228 81 HGAVPIFVKLLASP--SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158 (447)
Q Consensus 81 ~~~i~~L~~ll~~~--~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 158 (447)
.|++++++.++.+. +-.+.+++.|+|+|||+...+..+.-.-...++.|..++ ...|+++...|+|++++++..+.+
T Consensus 198 ~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E 276 (526)
T COG5064 198 CGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNE 276 (526)
T ss_pred cCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHH
Confidence 99999999999874 458889999999999964322111111223577777777 888999999999999999988733
Q ss_pred CCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 159 PIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 159 ~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
... ....++.+.|+.+|.+++..++..+++.++|+...++.+.+.++++|+++.+..+|+++...+|+.+||+++|++.
T Consensus 277 ~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA 356 (526)
T COG5064 277 KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356 (526)
T ss_pred HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence 333 3347888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHH
Q 013228 238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG---NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAA 314 (447)
Q Consensus 238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~ 314 (447)
++.++.+.+++.+++|.|+.+|.+. +..++++|||+++|..++ .|+.++++++.|+++.|+++|...+..+.+.++
T Consensus 357 Gnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~L 435 (526)
T COG5064 357 GNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVAL 435 (526)
T ss_pred CCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhH
Confidence 9999999999999999999999999 999999999999999873 678999999999999999999988888888899
Q ss_pred HHHHHhcCCCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228 315 RAISNATFGGTH----------EQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 315 ~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~ 365 (447)
.++.|+...+.. .+..++-+.|+++.+..+..+.+..+...|..++..++.
T Consensus 436 D~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 436 DAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred HHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence 999999876532 233444458999999999999999999999988888874
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=333.72 Aligned_cols=408 Identities=20% Similarity=0.248 Sum_probs=329.1
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
++.+|.++++..|..|+++|.+++.+. .+.+..+++.|++|.|+++|.+++++.+|+.|+|+|++++.++++++..+++
T Consensus 194 LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~ 272 (2102)
T PLN03200 194 LVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD 272 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 356788999999999999999888764 5578889999999999999987654799999999999999999999999999
Q ss_pred CCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhcCChh-----------HHHHH--------------------
Q 013228 81 HGAVPIFVKLLASPS---------DDIREQAVCALGNVAADSAR-----------CRDLV-------------------- 120 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~---------~~i~~~a~~~L~~l~~~~~~-----------~~~~~-------------------- 120 (447)
.|+++.|+.++.+++ ..++++++|+|+|+|.+.+. .++..
T Consensus 273 aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~ 352 (2102)
T PLN03200 273 AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSA 352 (2102)
T ss_pred CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCch
Confidence 999999999998654 34699999999999985322 10000
Q ss_pred -----Hh-cCCHHHHHHHhc-----------------------------------------cccchhHHHHHHHHHHHhc
Q 013228 121 -----LS-EEALIPLLTQLN-----------------------------------------KHAKLSMLRIATWTLSNFC 153 (447)
Q Consensus 121 -----~~-~~~l~~l~~~l~-----------------------------------------~~~~~~~~~~a~~~L~~l~ 153 (447)
.. ..+.+.|++++. ...+.+++..++|+|++++
T Consensus 353 ~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~ 432 (2102)
T PLN03200 353 ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLC 432 (2102)
T ss_pred hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHh
Confidence 00 111123333331 2344678999999999999
Q ss_pred CCCCCC-ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228 154 AGKPKP-IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV 232 (447)
Q Consensus 154 ~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 232 (447)
.+.... ......+++|.|+++|.+++..++..+++++++++..++++...+.+.|+++.|+++|.+++..+++.|+|+|
T Consensus 433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL 512 (2102)
T PLN03200 433 CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVL 512 (2102)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 876333 3334478999999999999999999999999999988877778899999999999999999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCChHHHHHhhccCC-------------------------------------------------
Q 013228 233 VNIAAGDDFQTQCIINCGALPYLLGLLIHNH------------------------------------------------- 263 (447)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~------------------------------------------------- 263 (447)
+|++...+..+..+.+.|+++.|+++|+++.
T Consensus 513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIl 592 (2102)
T PLN03200 513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVL 592 (2102)
T ss_pred HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 9999765444333334455555555554440
Q ss_pred -----------------------------chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHH
Q 013228 264 -----------------------------KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAA 314 (447)
Q Consensus 264 -----------------------------~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~ 314 (447)
+..+++.|+|+|.+++.+++++++.++..|++|.++.++.+++.+++++++
T Consensus 593 sl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA 672 (2102)
T PLN03200 593 SVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSA 672 (2102)
T ss_pred hhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHH
Confidence 444555555555555555556666777888999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHH
Q 013228 315 RAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLE 394 (447)
Q Consensus 315 ~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 394 (447)
|+|.+++...+.++...+++.|++++|++++++.+.+++..++.+|.+++..++. ...+.+.|+++
T Consensus 673 ~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--------------~~ei~~~~~I~ 738 (2102)
T PLN03200 673 RALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--------------AAEALAEDIIL 738 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--------------HHHHHhcCcHH
Confidence 9999999877888888889999999999999999999999999999999998764 45566789999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 013228 395 KIENLRSHDNDEIHEKSVKILETYWCGRV 423 (447)
Q Consensus 395 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 423 (447)
.|.+++.+++++.++.|.++|.+++....
T Consensus 739 ~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 739 PLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988876544
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=331.20 Aligned_cols=411 Identities=19% Similarity=0.189 Sum_probs=364.0
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
||++|...+.+.|..++++|..++.++ .+..+.+.+.|++|.|+++|.+++ +.+|..|+++|++++.++++.+..+++
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467888899999999999999999875 677889999999999999999998 899999999999999988999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.|+++.|+++|.+++..+++.|+|+|+|++.+++..+..+.+.|++++++++| .+.+.+.++.++|+|.+++.......
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~~ 565 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAAT 565 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchhH
Confidence 99999999999999999999999999999998888888888899999999999 55688999999999999974331110
Q ss_pred ------------------------------------h--hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH
Q 013228 161 ------------------------------------F--DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ 202 (447)
Q Consensus 161 ------------------------------------~--~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~ 202 (447)
. ....++++.|+.+++++++.+++.|+|+|.+++....+..+
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 0 00246899999999999999999999999999998888888
Q ss_pred HHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228 203 AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD-FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG 281 (447)
Q Consensus 203 ~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~ 281 (447)
.++..|+++.++.+|.+.+.++++.++++|++++.+.. .+...+++.|+++.|+++|+++ +.+++..++.+|.|++..
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSD 724 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999996543 4456678999999999999998 999999999999999886
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHH--HHHHHHcCChHHHHhhccCCCHHHHHH--HH
Q 013228 282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTV--FL 357 (447)
Q Consensus 282 ~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~~~~~--a~ 357 (447)
. +....+.+.|+++.|++++.+++++.|+.|+++|.+++.....+. ...+...|.+.+|+.+|...|.+.... ++
T Consensus 725 ~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al 803 (2102)
T PLN03200 725 P-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEAL 803 (2102)
T ss_pred c-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHH
Confidence 5 567778889999999999999999999999999999998876544 366678899999999999988876665 99
Q ss_pred HHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228 358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGR 422 (447)
Q Consensus 358 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (447)
.+|..+.+..+... ...+++...++..++++.|.....+.+|.++++|.++|+++|.++
T Consensus 804 ~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 804 EALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 99999998655543 345678999999999999988779999999999999999999764
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=231.83 Aligned_cols=398 Identities=19% Similarity=0.242 Sum_probs=334.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228 5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV 84 (447)
Q Consensus 5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 84 (447)
+.++..++|..++.++.+++.. +.....+...|++.++.++-++.+ ..+|..+..+|.++.. +.++|+.++.+|++
T Consensus 135 mmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~EnRr~LV~aG~l 210 (550)
T KOG4224|consen 135 MMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRENRRVLVHAGGL 210 (550)
T ss_pred hcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhhhhhhhccCCc
Confidence 4567778999999999999987 667778889999999999888888 8999999999999998 88999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcC--CHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEE--ALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD 162 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (447)
|.|+.++.+.++.++..|+.++++++-+.. .|+.+.+.+ .++.+++++ .+.+..++..|..+|.+++.+.......
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt~Yq~ei 288 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLASDTEYQREI 288 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhcccchhhhHH
Confidence 999999999999999999999999997765 577777777 899999999 7778899999999999999987666666
Q ss_pred hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC-chhHhHHHHHHHHhhcCChh
Q 013228 163 QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS-PSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~v~~~a~~~l~~l~~~~~~ 241 (447)
...+.+|.++++++++-.+.......|+.|++.++-+. ..+.+.|++..|+.+|+..+ ++++-.|..+|++++..++.
T Consensus 289 v~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~ 367 (550)
T KOG4224|consen 289 VEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH 367 (550)
T ss_pred HhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence 67999999999999998888888999999999876553 45788999999999998755 56999999999999998888
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~ 321 (447)
....+.+.|.++.+..++.++ .-.++.+...+++.++... .....+.+.|++|.|+.++.+.+.+++.+|+.+|.|++
T Consensus 368 n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 368 NVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred hhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 889999999999999999999 8999999999999987653 45778999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH
Q 013228 322 FGGTHEQIKYLVR------EGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK 395 (447)
Q Consensus 322 ~~~~~~~~~~l~~------~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 395 (447)
.. .+....+.+ .|.-..|.+++.+.+.-++..+.|.+..++..... +
T Consensus 446 s~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~-------------------------~ 498 (550)
T KOG4224|consen 446 SD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL-------------------------P 498 (550)
T ss_pred hh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc-------------------------c
Confidence 84 344444443 35556788888888888888999999888864322 1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCCC
Q 013228 396 IENLRSHDNDEIHEKSVKILETYWCGRVAGPQPGNEGEDALGSN 439 (447)
Q Consensus 396 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 439 (447)
+..+.. .+.++-+.+..+.++.-...+.++-|+.+.-.++...
T Consensus 499 ~~~~i~-~~ddii~~~~~~~~r~~~~g~~~~~~g~~~~~s~~~~ 541 (550)
T KOG4224|consen 499 LTAFIQ-SSDDIIELLNDIVARDANNGEYEDGEGDVILLSGRAL 541 (550)
T ss_pred HHHHHh-CchhHHHHHHHHHHHhccCCcccCCCCcccccCcchh
Confidence 222322 3355667888888888777777776666533444333
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-32 Score=231.28 Aligned_cols=396 Identities=19% Similarity=0.229 Sum_probs=340.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
.++++.++.++..|..++.+++-. .+..-.+++.+++..|+.-+..+. .++|..++.|+++++. .++++..+...|
T Consensus 92 ~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~kiA~sG 167 (550)
T KOG4224|consen 92 ALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKVKIARSG 167 (550)
T ss_pred HHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchhhhhhcc
Confidence 357889999999999999999876 566667778888888887777777 6999999999999998 578899999999
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD 162 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (447)
++.++.++-++.+..+++++..+|.|+....+ .|+.+...|+++.++.++ ++.|..++.+++.++++++.+...++..
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmThs~E-nRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTHSRE-NRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhhhhh-hhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999998888999999999999999986654 678888999999999999 8889999999999999999876444443
Q ss_pred hH--hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 163 QV--RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 163 ~~--~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
.. ..++|.|+.++++++++++-.|..+|+|++.....+ ..+.+.|.+|.++++++++..........|+.|++-+.-
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 33 349999999999999999999999999999766554 568899999999999999998888999999999987543
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
....+.+.|++..|+.+|+.+++.+++-.|..+|.|++..+..+...+.+.|.+|.+..++-++...++.+...++..+
T Consensus 325 -Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 325 -NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred -cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 3345788999999999999886778999999999999988888899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH-----hchHHH
Q 013228 321 TFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE-----AEGLEK 395 (447)
Q Consensus 321 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~ 395 (447)
+.+. ..+..+.+.|.++.|+.++.+.+.+++..+..+|.|+....+. |.+.++. .|.--+
T Consensus 404 al~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-------------YarviEawd~P~~gi~g~ 468 (550)
T KOG4224|consen 404 ALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-------------YARVIEAWDHPVQGIQGR 468 (550)
T ss_pred Hhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-------------HHHHHHHhcCcchhHHHH
Confidence 8853 5678899999999999999999999999999999999876444 4444442 234456
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 396 IENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 396 l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
|..+..++.-.+...|.|-+..+.++
T Consensus 469 L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 469 LARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 77778888888888888888877653
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=2.9e-26 Score=219.20 Aligned_cols=378 Identities=20% Similarity=0.205 Sum_probs=314.1
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL 90 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 90 (447)
.+.+.+...|.+++.. ......+.+.|+++.|+++|++++ .++...++.+|.+++. ..+++..+.+.|+++.|.++
T Consensus 264 qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHH
Confidence 4555677788899876 567778899999999999999998 8999999999999999 78899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHH
Q 013228 91 LASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA 170 (447)
Q Consensus 91 l~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 170 (447)
+.+++..++..++++|.||+.+.. .|..+.+.|++|.++.+|. + +..+..++.+|++++.+..........+++|.
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDEARSMFAYTDCIPQ 415 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHhhHHHHhhcchHHH
Confidence 999999999999999999998866 6889999999999999994 3 34567799999999998765555566789999
Q ss_pred HHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhc
Q 013228 171 LAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINC 249 (447)
Q Consensus 171 l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 249 (447)
+++++ ..+++.+...++..+.|++.+... .+.+.+.++++.|+...-..... ..+..+.|++.+.+.....+.
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~-- 489 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV-- 489 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--
Confidence 99875 456777888889999999976644 57788889999999887543332 245688899987754444443
Q ss_pred CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHHHHHHhcCCCCHH
Q 013228 250 GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAARAISNATFGGTHE 327 (447)
Q Consensus 250 ~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~~~~~ 327 (447)
+++..|+.++..+.+.+..-++.++|+|+...+.+..+.+.+.+++|.+.+.|..+ ++++..+++..++.++. +++
T Consensus 490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~ 567 (708)
T PF05804_consen 490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPE 567 (708)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHH
Confidence 47778888888776889999999999999876545444455689999999999854 56899999999999997 678
Q ss_pred HHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCH
Q 013228 328 QIKYLVREGCIKPLCDLLLC--ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDND 405 (447)
Q Consensus 328 ~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~ 405 (447)
....+.+.|+++.|++++.. .|.+++.+.+.++++++...+.. ...+.+.++...+..++++.|+
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~~ylidL~~d~N~ 634 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIPAYLIDLMHDKNA 634 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchHHHHHHHhcCCCH
Confidence 88888999999999999976 46789999999999999886653 4566778999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013228 406 EIHEKSVKILET 417 (447)
Q Consensus 406 ~v~~~a~~~l~~ 417 (447)
+|++.|..+|.-
T Consensus 635 ~ir~~~d~~Ldi 646 (708)
T PF05804_consen 635 EIRKVCDNALDI 646 (708)
T ss_pred HHHHHHHHHHHH
Confidence 999888777655
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=4.5e-25 Score=211.10 Aligned_cols=355 Identities=19% Similarity=0.213 Sum_probs=295.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
|++.|.+++.++...++..|.+++.. .++...|.+.|+++.|++++.+++ .+++..++++|.|++. +++.|..+++
T Consensus 295 Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R~~mV~ 370 (708)
T PF05804_consen 295 LVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELRSQMVS 370 (708)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHHHHHHH
Confidence 45678899999999999999999987 678999999999999999999998 8999999999999999 7899999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.|++|.|+.++.+ +..+..++.+|.++|.++. .+..+...++++.+++++..++++.+...+.+.+.|++.+.....
T Consensus 371 ~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaq 447 (708)
T PF05804_consen 371 LGLIPKLVELLKD--PNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQ 447 (708)
T ss_pred CCCcHHHHHHhCC--CchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHH
Confidence 9999999999975 4566789999999998765 788888899999999998777778888889999999999875554
Q ss_pred hhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcC
Q 013228 161 FDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~ 238 (447)
.....++++.|+... +..|+- .+..++|++.+++.....+. +.+..|+..+.. ++++....++.+|+|+...
T Consensus 448 lm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 448 LMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred HHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 444467888888764 444433 45689999988754333333 467777777755 5678999999999999987
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CchhHHHHHHH
Q 013228 239 DDFQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN--AEFDIKNWAAR 315 (447)
Q Consensus 239 ~~~~~~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~ 315 (447)
+......+.+.+++|.+.+.|..+. ..++.-+++..++.++. ++.....+.+.|+++.|++++.. +|.++....++
T Consensus 522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~ 600 (708)
T PF05804_consen 522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILY 600 (708)
T ss_pred CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHH
Confidence 6666666667899999999997542 45788999999999876 45777888899999999999984 57899999999
Q ss_pred HHHHhcCCCCHHHHHHHH-HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228 316 AISNATFGGTHEQIKYLV-REGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK 371 (447)
Q Consensus 316 aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 371 (447)
++..+..+. +.+..+. +.+++..|+.++++.+++++..|-.+|.-+...++...
T Consensus 601 ~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 601 VFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999964 4455554 47899999999999999999999999999999887654
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.88 E-value=2.2e-20 Score=174.89 Aligned_cols=366 Identities=20% Similarity=0.227 Sum_probs=285.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh--HH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSAR--CR 117 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~--~~ 117 (447)
-+|..+.+|.+++ +.+|..|+.-+..++.++.+.+..+.+.|+|+.|+.++.++..+++.+++++|.||...... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4788899999999 89999999999999999999999999999999999999999999999999999999966654 67
Q ss_pred HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc----------C----ChhHH
Q 013228 118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS----------N----DKEVM 183 (447)
Q Consensus 118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~----------~----~~~v~ 183 (447)
-.+.+.++++.++++|+...|.++++.+..+||||++++ ..........++.|..-+-. + +..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 778899999999999987789999999999999999984 55555666777766654321 1 25677
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcC------CCCchhHhHHHHHHHHhhcCCh-----h----------
Q 013228 184 TDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLG------HPSPSVLTRALQTVVNIAAGDD-----F---------- 241 (447)
Q Consensus 184 ~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~------~~~~~v~~~a~~~l~~l~~~~~-----~---------- 241 (447)
..+..+|+|++....+..+.+.+. |++..|+..++ +.+..-.+.++.++.|+...-. .
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 889999999998777766777665 88899888875 2455566777777888763211 0
Q ss_pred ----------------hHHH----------------------HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCC-
Q 013228 242 ----------------QTQC----------------------IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGN- 282 (447)
Q Consensus 242 ----------------~~~~----------------------~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~- 282 (447)
..+. +....++..-..++....+..+.+.++++|-|++.+.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0000 0111223333444443336778899999999999842
Q ss_pred ---HHHHHHH-HHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC------HHH
Q 013228 283 ---SEHIQAV-IDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD------PEI 352 (447)
Q Consensus 283 ---~~~~~~l-~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~------~~~ 352 (447)
......+ .+..++|.|++++..++..+...++.+|.||+.+ +..... +..++++.|++.|.... .++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk~l-igk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNKEL-IGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhhhh-hhcchHHHHHHhCcCCCCCcCchHHH
Confidence 2233334 4678999999999999999999999999999984 444444 45789999999997643 588
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCCC
Q 013228 353 VTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDEIHEKSVKILETYWCGRV 423 (447)
Q Consensus 353 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~~ 423 (447)
...++..|.+++..... .++.+.+.++++.|..+.. ..++++.++|..++..+|...|
T Consensus 629 v~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999965443 2566777999999998854 4577999999999999998665
No 12
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.5e-18 Score=162.17 Aligned_cols=383 Identities=19% Similarity=0.252 Sum_probs=302.9
Q ss_pred cccccCC-CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGVWSD-DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
+++|+.. |+..|++|+..|+.+++..+.+...-+--..++|.|+.+|+++.+.++...|+++|.+++.--|.....+++
T Consensus 173 L~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~ 252 (1051)
T KOG0168|consen 173 LQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD 252 (1051)
T ss_pred HHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec
Confidence 4566665 999999999999999887656665555455689999999999988999999999999999988999999999
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 81 HGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 81 ~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
.++||.|+.-|.. ...++.++++.+|-.|++..+ ..+++.|++...+..+ ......+++.|+.+..|+|..-+..
T Consensus 253 ~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 253 EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999986654 789999999999999998765 4678999999999999 6777889999999999999988777
Q ss_pred ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhcCCCC----chhHhHHHHHH
Q 013228 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE---GTNDEIQAVIEAGVCPRLVELLGHPS----PSVLTRALQTV 232 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~----~~v~~~a~~~l 232 (447)
....+...+|.|..+|+..|.+..+.++-++..++. +.++..+.+...|++....+++.-.. ..+....++.+
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence 777888999999999999999999999999999884 45567777888899999999985432 34566678888
Q ss_pred HHhhcCChhhHHHHHhcCChHHHHHhhccCC-------------chhHHHHHHH--------------------------
Q 013228 233 VNIAAGDDFQTQCIINCGALPYLLGLLIHNH-------------KKSIKTDACW-------------------------- 273 (447)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-------------~~~v~~~a~~-------------------------- 273 (447)
..++.+++-....+.+.++...+..+|.+.. .+.-..+...
T Consensus 409 s~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~ 488 (1051)
T KOG0168|consen 409 SLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIV 488 (1051)
T ss_pred HHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccc
Confidence 8888888877777888888888877774320 0000000000
Q ss_pred ----------------------HHHHHh--------------------------cCCHHHHHHHHHcCChHHHHHHHhcC
Q 013228 274 ----------------------TISNIT--------------------------AGNSEHIQAVIDAGLIGPLVNLLQNA 305 (447)
Q Consensus 274 ----------------------~l~nl~--------------------------~~~~~~~~~l~~~~~~~~L~~~l~~~ 305 (447)
+.+.+. ...|+..+.+.+. ++|.|++++.+.
T Consensus 489 n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~-llpVLveVYsSs 567 (1051)
T KOG0168|consen 489 NLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKD-LLPVLVEVYSSS 567 (1051)
T ss_pred cccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHH-HHHHHHHHHhcc
Confidence 000010 0112223333332 789999998865
Q ss_pred -chhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHH
Q 013228 306 -EFDIKNWAARAISNATFGGTHEQIKYLVRE-GCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQY 383 (447)
Q Consensus 306 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 383 (447)
++.||..++.+|..+....+.+.+..++.+ .+-..+-.+|.++|..+..-|+....-|++.-++ .|
T Consensus 568 A~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd------------~F 635 (1051)
T KOG0168|consen 568 ANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD------------TF 635 (1051)
T ss_pred CCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH------------Hh
Confidence 899999999999999998888887776654 5556778899999999998899888888876444 37
Q ss_pred HHHHHHhchHHHHHHHhc
Q 013228 384 AQLVEEAEGLEKIENLRS 401 (447)
Q Consensus 384 ~~~i~~~~~~~~l~~l~~ 401 (447)
...|.++|.+..+..|..
T Consensus 636 ~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 636 SPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred hhhHhhhhHHHHHHHHhc
Confidence 888999999999999976
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=8.5e-19 Score=164.36 Aligned_cols=357 Identities=20% Similarity=0.230 Sum_probs=272.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--hHHHHH
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSE--DTKVVI 79 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~ 79 (447)
|..|.+.++.+|..|+.++..++-+. +.-...+.+.|+++.|+.+|.++. .+|+.+|+++|.|++.++.. ++..+.
T Consensus 239 i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NKlai~ 316 (717)
T KOG1048|consen 239 ISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNKLAIK 316 (717)
T ss_pred HHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccchhhh
Confidence 45688999999999999999998775 555667778899999999999999 89999999999999987666 888899
Q ss_pred hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-cc------------cchhHHHHH
Q 013228 80 DHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-KH------------AKLSMLRIA 145 (447)
Q Consensus 80 ~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~------------~~~~~~~~a 145 (447)
+.++++.++++|+. .|.++++.+..+|+||++.+. ++..+.. ..+..|..... .. .+.++..++
T Consensus 317 ~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~ 394 (717)
T KOG1048|consen 317 ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNV 394 (717)
T ss_pred hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehh
Confidence 99999999999987 799999999999999998744 4444433 34555555442 11 136789999
Q ss_pred HHHHHHhcCCCC--CCChhhHhhhHHHHHHhhc------cCChhHHHHHHHHHHHhccCCc-----H-------------
Q 013228 146 TWTLSNFCAGKP--KPIFDQVRPALPALAQLVH------SNDKEVMTDACRALFYLSEGTN-----D------------- 199 (447)
Q Consensus 146 ~~~L~~l~~~~~--~~~~~~~~~~l~~l~~ll~------~~~~~v~~~al~~l~~l~~~~~-----~------------- 199 (447)
..||.|++.... ...+....|++..|+..++ ..|.+-.++++..++|++..-. .
T Consensus 395 tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~ 474 (717)
T KOG1048|consen 395 TGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPG 474 (717)
T ss_pred hhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccccc
Confidence 999999998652 2233334788888888776 3467778889999999984321 0
Q ss_pred -------------HHHH----------------------HHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCCh---
Q 013228 200 -------------EIQA----------------------VIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDD--- 240 (447)
Q Consensus 200 -------------~~~~----------------------~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~--- 240 (447)
+.+. +....++..-+.+| .+.+..+.+.++.+|.|++.+..
T Consensus 475 ~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~ 554 (717)
T KOG1048|consen 475 VGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS 554 (717)
T ss_pred CCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch
Confidence 0000 01111233323333 33566788999999999987654
Q ss_pred -hhHHHH-HhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------chhHHHH
Q 013228 241 -FQTQCI-INCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA------EFDIKNW 312 (447)
Q Consensus 241 -~~~~~~-~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~------~~~v~~~ 312 (447)
..+..+ .+..+++.++++|+.+ +..+...++.+|.|++.+. . .+.++..++++.|++.|... +.++...
T Consensus 555 ~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~-r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 555 EYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI-R-NKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred hHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc-h-hhhhhhcchHHHHHHhCcCCCCCcCchHHHHHH
Confidence 223333 6778999999999999 9999999999999998763 3 34566688999999999843 3688889
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHh
Q 013228 313 AARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 313 a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~ 366 (447)
++.+|.++... +....+.+.+.+.++.|+.+..+. ++...+++...|..|=.+
T Consensus 632 vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 632 VCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 99999999876 678888899999999999998874 457777777777776544
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.82 E-value=1.3e-16 Score=151.76 Aligned_cols=368 Identities=18% Similarity=0.212 Sum_probs=279.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 120 (447)
.+.+..+|++.+ .+....++.+|..+.... ..... ..+..+.|...|.++++.+|+.+++.++++..++......+
T Consensus 40 ~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 40 EPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 344778888877 677788889999888732 22222 44677899999999999999999999999998888777788
Q ss_pred HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHH
Q 013228 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200 (447)
Q Consensus 121 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~ 200 (447)
.+.+.++.++..+ .+++.++...|..+|..++...+........+.++.|..++..+++.++..++.++.+++..+++.
T Consensus 116 ~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8889999999999 888999999999999999987644433334666888999998888899999999999999999988
Q ss_pred HHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh-----HHHHHHHHH
Q 013228 201 IQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS-----IKTDACWTI 275 (447)
Q Consensus 201 ~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-----v~~~a~~~l 275 (447)
...+.+.|+++.++..+.+++.-++..++.++..++. .+...+.+.+.|+++.|..++.+..... +-.......
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 8888999999999999999888899999999999999 6667788999999999999997652222 112233556
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHH-HHcC-----ChHHHHhhccCCC
Q 013228 276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYL-VREG-----CIKPLCDLLLCAD 349 (447)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~-----~l~~L~~ll~~~~ 349 (447)
++++...+..+.... ..++..+.+++.+.|+..+..|..+++.++. +.+....+ ...+ ++..+.....+..
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 677664444332222 2366677777888999999999999999986 55666666 3322 3555555566777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH--hchHH-HHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 350 PEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE--AEGLE-KIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 350 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
.+++..++.++.+++...+....... .+.....+.. .+... .+..+..+|=+|++-.+.+++..++..
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i----~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDI----LSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHH----HHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 89999999999999876654211100 0111122222 22233 677888888899999999999887653
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.81 E-value=3.5e-16 Score=148.93 Aligned_cols=394 Identities=16% Similarity=0.173 Sum_probs=292.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
+..|++.+.+....++..|.++.... .. ..+ ..+..+.|...|.+++ +.||..+++.+++++.++......+.+.
T Consensus 44 f~~L~~~~~e~v~~~~~iL~~~l~~~--~~-~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 44 FDCLNTSNREQVELICDILKRLLSAL--SP-DSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhcc--CH-HHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 34567777778888888898888753 22 222 4567899999999999 9999999999999999888878888899
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
++++.++..+.+++..+...|+.+|.+++...+.. +.+...+.+..+..++ ...+..++..+..++.+++..++....
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999887754 4566777788888888 444667888899999999987643333
Q ss_pred hh-HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCch-----hH-hHHHHHHHH
Q 013228 162 DQ-VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPS-----VL-TRALQTVVN 234 (447)
Q Consensus 162 ~~-~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-----v~-~~a~~~l~~ 234 (447)
.. ..|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|...+.+.+.+ +. ...+...++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 33 36899999999999999999999999999998 445567889999999999999653222 22 223467777
Q ss_pred hhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC-----ChHHHHHHHhcCchh
Q 013228 235 IAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAV-IDAG-----LIGPLVNLLQNAEFD 308 (447)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~~-----~~~~L~~~l~~~~~~ 308 (447)
++...+....... ..++..+..++.+. +...+..|.-+++.+++. .+....+ ...+ ++..+.....++..+
T Consensus 276 la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 276 LARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 7775443322111 23556667777788 999999999999999864 4556666 3332 344444455567789
Q ss_pred HHHHHHHHHHHhcCCCCH---HH----HHHH---HHcCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228 309 IKNWAARAISNATFGGTH---EQ----IKYL---VREGCIK-PLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAI 377 (447)
Q Consensus 309 v~~~a~~aL~~l~~~~~~---~~----~~~l---~~~~~l~-~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 377 (447)
+|..+..++.++...... +. .+.. ...+... .+..+++.+=++++.+++..|..++...-.
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg-------- 424 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG-------- 424 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH--------
Confidence 999999999999654332 11 1111 1234455 777888777799999999999999976432
Q ss_pred ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228 378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419 (447)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (447)
........|+++.+.+=....+++.+++=-.++.++.
T Consensus 425 -----~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 425 -----QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred -----HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 2455666777888876666667776666566666655
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=6.9e-17 Score=136.23 Aligned_cols=311 Identities=12% Similarity=0.129 Sum_probs=256.6
Q ss_pred cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228 6 WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRE-DYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV 84 (447)
Q Consensus 6 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 84 (447)
.+++..+...++.+|..+..+. ..+.+..++..++++|... ++.++-...+.++..-+..++.+|+.+++.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 5677888889999988887663 2356677889999988543 237888889999999998899999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhhcCCh---------hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228 85 PIFVKLLAS-PSDDIREQAVCALGNVAADSA---------RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA 154 (447)
Q Consensus 85 ~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~---------~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (447)
+.+.+.+.. ....+.+...|++.-+..+++ .....+...+++..|++.+...-++.+...++.+|..++-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999976654 455688899999999886553 3456677788899999999878889999999999999998
Q ss_pred CCCCCChhhHhhhHHHHHHhhccC-Chh---HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc--CCCCchhHhHH
Q 013228 155 GKPKPIFDQVRPALPALAQLVHSN-DKE---VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL--GHPSPSVLTRA 228 (447)
Q Consensus 155 ~~~~~~~~~~~~~l~~l~~ll~~~-~~~---v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~v~~~a 228 (447)
..+........|++..+++++.+. +.. ....++..|+.++.+++. ...+++.|+.+.++.++ ..++|.+...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv-Ks~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV-KSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch-HHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 765555555689999999999874 333 456788889999866554 46799999999999988 34778999999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCch
Q 013228 229 LQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEF 307 (447)
Q Consensus 229 ~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~ 307 (447)
+.+++-++-..++....+++.|+-...++.++ ++....+++.+||++.|++..+.+++..++.. +++.|+......++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999888888889999999999999887 55567899999999999999888877777766 67888888888999
Q ss_pred hHHHHHHHHHHHhcCC
Q 013228 308 DIKNWAARAISNATFG 323 (447)
Q Consensus 308 ~v~~~a~~aL~~l~~~ 323 (447)
..+..|..+|..+-..
T Consensus 430 tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGCD 445 (461)
T ss_pred cHHHHHHHHHHhcCcc
Confidence 9999999999998763
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.80 E-value=2.6e-17 Score=161.43 Aligned_cols=350 Identities=19% Similarity=0.206 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH---
Q 013228 14 LEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED--YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFV--- 88 (447)
Q Consensus 14 ~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~--- 88 (447)
.+-++.|..+.+. .+....+...|+++.|+++|.-++ +.+.+..|-.+|.|+....++....-.+..++..|-
T Consensus 212 ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr 289 (2195)
T KOG2122|consen 212 EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR 289 (2195)
T ss_pred HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence 4555666666654 566778889999999999997654 267889999999999986665443322222222221
Q ss_pred -------HhhCC------C-CHHHH-HHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc-----------ccchhHH
Q 013228 89 -------KLLAS------P-SDDIR-EQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK-----------HAKLSML 142 (447)
Q Consensus 89 -------~ll~~------~-~~~i~-~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-----------~~~~~~~ 142 (447)
..+.. + ..+-+ ..|+.+|..++.+. ++|..+.+.|++..+-+++.- .....++
T Consensus 290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR 368 (2195)
T KOG2122|consen 290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR 368 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 12221 1 12222 36777788877664 588999999999999997731 2245799
Q ss_pred HHHHHHHHHhcCCCCCCChhh--HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHH-HHHHHhCcHHHHHHhc-C
Q 013228 143 RIATWTLSNFCAGKPKPIFDQ--VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEI-QAVIEAGVCPRLVELL-G 218 (447)
Q Consensus 143 ~~a~~~L~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~-~~~~~~~~~~~L~~lL-~ 218 (447)
+++..+|.||+..+....... ..+++..++..|.+..+++..-...+|+||+-..+... +.+.+.|-+..|.... .
T Consensus 369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~ 448 (2195)
T KOG2122|consen 369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR 448 (2195)
T ss_pred HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999883332222 37999999999999888999999999999996655444 4455568888887764 5
Q ss_pred CCCchhHhHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHhhccCC---chhHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 013228 219 HPSPSVLTRALQTVVNIAAGDDFQTQCIIN-CGALPYLLGLLIHNH---KKSIKTDACWTISNITA---GNSEHIQAVID 291 (447)
Q Consensus 219 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~---~~~v~~~a~~~l~nl~~---~~~~~~~~l~~ 291 (447)
..++...+..+.+||||+.++.+....|.. .|.+.+|+.+|.... ...+...+.++|.|+.. ..+++++.+.+
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 567788899999999999877666555544 588999999997431 45677888889988876 46678888899
Q ss_pred cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 292 AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 292 ~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
++.+..|+..|++....+..++|.+|+||+.. +++..+.|++.|.+..|..++++.+..+.+-+..+|.|++...
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999987 6777899999999999999999999999999999999999765
No 18
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.79 E-value=2.6e-17 Score=143.21 Aligned_cols=358 Identities=15% Similarity=0.134 Sum_probs=261.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHccC--CCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 5 VWSDDNNMQLEATTHIRKLLSNA--RSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 5 l~s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
+...+..+...+..++...+..+ ++...+..+.++.++.|.+..++++ .++-.+++++|+|+|.++.+.|..+.+.|
T Consensus 51 i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lg 129 (604)
T KOG4500|consen 51 IMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLG 129 (604)
T ss_pred eeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence 33445567777788888877542 0112334466788899999999997 89999999999999999999999999999
Q ss_pred ChHHHHHhhCC----C---CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-cccchhHHHHHHHHHHHhcC
Q 013228 83 AVPIFVKLLAS----P---SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-KHAKLSMLRIATWTLSNFCA 154 (447)
Q Consensus 83 ~i~~L~~ll~~----~---~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~L~~l~~ 154 (447)
+-..++..|+. + +.+....+...|.|...++.+.+..+.+.|+++.+...+- ...+...-+.......++.+
T Consensus 130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls 209 (604)
T KOG4500|consen 130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLS 209 (604)
T ss_pred CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHH
Confidence 97777777764 2 3467778888999999999999999999999998888773 23343444444444333332
Q ss_pred CCCC--CChhhHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCch-------
Q 013228 155 GKPK--PIFDQVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPS------- 223 (447)
Q Consensus 155 ~~~~--~~~~~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~------- 223 (447)
-... ........+.-.+++++.+. .+.+.+-+...+...++++.-. -.+.+.|.+..++.+++. +...
T Consensus 210 ~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~ 288 (604)
T KOG4500|consen 210 FVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLN 288 (604)
T ss_pred HHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHH
Confidence 2101 11122244455566666543 5667777788888888765543 347788999999888865 2221
Q ss_pred hHhHHHHHHHHhhcCChhhHHHHHhcC-ChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228 224 VLTRALQTVVNIAAGDDFQTQCIINCG-ALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l 302 (447)
....++....-+..+++.- +.+...+ +++.+..++.+. +......+..+++|+++.+ +.+.++++.+++..|++++
T Consensus 289 l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l 365 (604)
T KOG4500|consen 289 LFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCL 365 (604)
T ss_pred HHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHH
Confidence 2233444444445555543 4455544 889999999999 9999999999999998875 6677899999999999998
Q ss_pred hc-----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 303 QN-----AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 303 ~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
.. ++.+++..++.+|+|+.... .+...+...|+.+.+..+++...|.+...-++.++-+....+.
T Consensus 366 ~~~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~ 435 (604)
T KOG4500|consen 366 MQEKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY 435 (604)
T ss_pred HHhcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH
Confidence 74 46778889999999999853 4567788999999999999999999998888888887765543
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=5.4e-15 Score=124.92 Aligned_cols=319 Identities=17% Similarity=0.211 Sum_probs=251.7
Q ss_pred ccCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 013228 37 PFGVVPRFVEFL---MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAA 111 (447)
Q Consensus 37 ~~~~v~~L~~ll---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~ 111 (447)
..|..+.++.++ .+++ ..+...++.+|..+..+.|+ +.+..++..++.+|.. .+.++-...+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 456666666554 3455 67888999999998886665 5567889999998865 577888888888988888
Q ss_pred CChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC-Chh---------hHhhhHHHHHHhhccC-Ch
Q 013228 112 DSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP-IFD---------QVRPALPALAQLVHSN-DK 180 (447)
Q Consensus 112 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~---------~~~~~l~~l~~ll~~~-~~ 180 (447)
..+..|+.+++.++++.+.+.|.......+.+.++|++..+..++..+ .+. .-.+++..|+..++-. +|
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 888899999999999999988865555579999999999998776211 111 1145677788887744 78
Q ss_pred hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCch---hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHH
Q 013228 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPS---VLTRALQTVVNIAAGDDFQTQCIINCGALPYLL 256 (447)
Q Consensus 181 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~ 256 (447)
.+...++.+|..++..+ +..+.+.+.|++..+++++.+ ++.. ..+.++..|..++. ++.....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 89999999999999654 456789999999999999977 3333 34667788877775 555778899999999999
Q ss_pred Hhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-C-chhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 013228 257 GLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN-A-EFDIKNWAARAISNATFGGTHEQIKYLV 333 (447)
Q Consensus 257 ~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~ 333 (447)
.++. +..++.+..+++.+++-++...|++...+++.|+-...+..++. + ...++++|++++.|+... +.+++..++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence 8774 44489999999999999999999999999999999999998883 2 578999999999999987 456667766
Q ss_pred HcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228 334 REGCIKPLCDLLLCADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 334 ~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~ 364 (447)
..| ++.|+..-...++.....+-.+|..|-
T Consensus 414 ~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 414 ANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred hcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 655 888888888888877777777777663
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.5e-15 Score=132.78 Aligned_cols=375 Identities=18% Similarity=0.151 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL 90 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 90 (447)
.+...|+..|.+++.. -..-..+.+.+++..|++.|..++ .++.......|..++- ..+++..+.+.|+++.|+++
T Consensus 278 qLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~kl 353 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHh
Confidence 4455677778888865 445566788899999999999999 7999999999999988 67889999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHH
Q 013228 91 LASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA 170 (447)
Q Consensus 91 l~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 170 (447)
....+++++...+..+.|++.++. .+..+...|.+|.+..++.++. -..-|+..++.++.++..........+++.
T Consensus 354 fp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~MfayTdci~~ 429 (791)
T KOG1222|consen 354 FPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAYTDCIKL 429 (791)
T ss_pred cCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence 999999999999999999998876 5667778899999999994332 234467788888887655555556889998
Q ss_pred HHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228 171 LAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCIIN 248 (447)
Q Consensus 171 l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 248 (447)
+++.+ ...+.++-...+....|++-+..+ .+.+.+..++..|+..- +..+. . ....+.|++.+.......+++
T Consensus 430 lmk~v~~~~~~~vdl~lia~ciNl~lnkRN-aQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~Fid 504 (791)
T KOG1222|consen 430 LMKDVLSGTGSEVDLALIALCINLCLNKRN-AQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNMFID 504 (791)
T ss_pred HHHHHHhcCCceecHHHHHHHHHHHhcccc-ceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHHHHH
Confidence 88764 455667766666666677754432 34566677777777664 33333 2 345666777766555555665
Q ss_pred cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHHHHHHhcCCCCH
Q 013228 249 CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAARAISNATFGGTH 326 (447)
Q Consensus 249 ~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~~~~ 326 (447)
.+.-|..+++...+.....++.++++|+...+-+-.+.+.+...+|.+-..|..+ ..++......+++.++. +.
T Consensus 505 --yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d~ 580 (791)
T KOG1222|consen 505 --YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--DL 580 (791)
T ss_pred --HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--hh
Confidence 6677777777665777888899999999876555555566788999999999854 46788888889999988 44
Q ss_pred HHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCC
Q 013228 327 EQIKYLVREGCIKPLCDLLLC--ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDN 404 (447)
Q Consensus 327 ~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~ 404 (447)
.....+...|+++.++++|.. .|.+++...+..+..+++..... .-.+++...-..+..|+++.|
T Consensus 581 ~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLMHDkN 647 (791)
T KOG1222|consen 581 DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLMHDKN 647 (791)
T ss_pred HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHHhccc
Confidence 667777889999999999986 46678888888888888763321 445667777788999999999
Q ss_pred HHHHHHHHHHH
Q 013228 405 DEIHEKSVKIL 415 (447)
Q Consensus 405 ~~v~~~a~~~l 415 (447)
.++++.+...+
T Consensus 648 ~eiRkVCDn~L 658 (791)
T KOG1222|consen 648 AEIRKVCDNAL 658 (791)
T ss_pred HHHHHHHHHHH
Confidence 98876555444
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.72 E-value=9.7e-15 Score=127.38 Aligned_cols=399 Identities=12% Similarity=0.060 Sum_probs=285.7
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCC---C---CHHHHHHHHHHHHHHcCCChhhH
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRE---D---YPQLQFEAAWALKNIVSGTSEDT 75 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~---~---~~~v~~~a~~~L~~l~~~~~~~~ 75 (447)
.+..+|++.++..+..++|.+++..+ .+.+..+.+.|+-..++..|+.- + +.+....++..|.|..-++.+.+
T Consensus 93 rq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~ 171 (604)
T KOG4500|consen 93 RQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELR 171 (604)
T ss_pred HhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHH
Confidence 34567888999999999999999876 88899999999977777777542 2 24666777889999999999999
Q ss_pred HHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228 76 KVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF 152 (447)
Q Consensus 76 ~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (447)
..+.+.|+++.|...+.- .+....+.......|+.+-- +...+...+......+++++.....++..+.+...+...
T Consensus 172 aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ 251 (604)
T KOG4500|consen 172 AQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKA 251 (604)
T ss_pred HHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHH
Confidence 999999999999988754 56667677766666665322 223445556667778888887777788888899999999
Q ss_pred cCCCCCCChhhHhhhHHHHHHhhcc-CCh-------hHHHHHHHHHHHhccCCcHHHHHHHHhC-cHHHHHHhcCCCCch
Q 013228 153 CAGKPKPIFDQVRPALPALAQLVHS-NDK-------EVMTDACRALFYLSEGTNDEIQAVIEAG-VCPRLVELLGHPSPS 223 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~l~~ll~~-~~~-------~v~~~al~~l~~l~~~~~~~~~~~~~~~-~~~~L~~lL~~~~~~ 223 (447)
+.++.-.-.....|.+..++.+++. .+. .....++....-+..+++ ..+.+...+ +++.+...+.+++..
T Consensus 252 aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~d~~ 330 (604)
T KOG4500|consen 252 AENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSDDSN 330 (604)
T ss_pred hcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCCchh
Confidence 9887444334446777778887775 222 222333333333444443 345566665 899999999999999
Q ss_pred hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 013228 224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN----HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~ 299 (447)
....+..+++|+++.+. .+..+++.+++..|+.++... .+-+++..++.+|.|+.-.- .+...++..|+.+.++
T Consensus 331 l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL 408 (604)
T KOG4500|consen 331 LITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAIL 408 (604)
T ss_pred HHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchHHHHH
Confidence 99999999999999766 445688889999999998541 15677888999999997743 4466888999999999
Q ss_pred HHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHH-HcCChHHHHhhccCCCH-HHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228 300 NLLQNAEFDIKNWAARAISNATFGGTHEQIKYLV-REGCIKPLCDLLLCADP-EIVTVFLKGLEKILKVGEAEKNMDIAI 377 (447)
Q Consensus 300 ~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~ 377 (447)
.+++...|++...-...++-+.... +.....+. +...++.|+.--+++|- .+.-.....+.-+++..-..+
T Consensus 409 ~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd------ 481 (604)
T KOG4500|consen 409 LQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD------ 481 (604)
T ss_pred HHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh------
Confidence 9999999999998888887665432 21222222 23446666666666654 355555566666666532211
Q ss_pred ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228 378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE 416 (447)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (447)
..-.+-+.||++....+....+-..+..|.-.+.
T Consensus 482 -----v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~ 515 (604)
T KOG4500|consen 482 -----VILTVPKSGGIKEKVSMFTKNHINMQNEALVALL 515 (604)
T ss_pred -----hHhhccccccHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 3455566888888888877776666666655443
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.6e-14 Score=126.47 Aligned_cols=384 Identities=15% Similarity=0.123 Sum_probs=285.5
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
+|+.|.-++.++.......|.+++.. .++...+.+.|++..|++++.... ++++..++..+.|++. +...+..++.
T Consensus 309 LVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~KMv~ 384 (791)
T KOG1222|consen 309 LVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRPKMVN 384 (791)
T ss_pred HHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccHHHhh
Confidence 35667777788888888888888776 677888999999999999999999 9999999999999999 6789999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.|.+|.+..++.+. .-...|+..+..++.++. .+..+....+++.++..+....+.++-........|+|.+..+.+
T Consensus 385 ~GllP~l~~ll~~d--~~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ 461 (791)
T KOG1222|consen 385 GGLLPHLASLLDSD--TKHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ 461 (791)
T ss_pred ccchHHHHHHhCCc--ccchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce
Confidence 99999999999763 334456777777876655 677888888999999988788888887777777788888765555
Q ss_pred hhhHhhhHHHHHHh-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhcC
Q 013228 161 FDQVRPALPALAQL-VHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 161 ~~~~~~~l~~l~~l-l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~~ 238 (447)
.......+..|+.. ++..|+-+ ...++|++.+.......+++. +..|...++ +.++.....++.+++|+...
T Consensus 462 lvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~ 535 (791)
T KOG1222|consen 462 LVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVT 535 (791)
T ss_pred EEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccC
Confidence 54445566666654 56656543 457788888776544445543 555666664 45677888899999999876
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CchhHHHHHHH
Q 013228 239 DDFQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN--AEFDIKNWAAR 315 (447)
Q Consensus 239 ~~~~~~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~ 315 (447)
.-.....+-..+.+|.+-..|..+. ..++.-..+-+++.++.. ......+...++++.++++|+. .|.+.......
T Consensus 536 dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Qiiy 614 (791)
T KOG1222|consen 536 DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIY 614 (791)
T ss_pred CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHH
Confidence 6667777777899999999887542 345666777777777654 3555566688999999999994 47777778888
Q ss_pred HHHHhcCCCCHHHHHHHH-HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHH
Q 013228 316 AISNATFGGTHEQIKYLV-REGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLE 394 (447)
Q Consensus 316 aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 394 (447)
++..+... ...+..++ +...-..++.++++.+.+++..|-.+|.-+...+....+... . -......+.+++
T Consensus 615 VF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~----~--EkFrwHNsQWLe 686 (791)
T KOG1222|consen 615 VFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIA----G--EKFRWHNSQWLE 686 (791)
T ss_pred HHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHh----h--hhcccchhHHHH
Confidence 88888775 23344444 345566799999999999999999999999888776543311 0 012233566777
Q ss_pred HHHHHhcCCCHH
Q 013228 395 KIENLRSHDNDE 406 (447)
Q Consensus 395 ~l~~l~~~~~~~ 406 (447)
.++.-+.++++.
T Consensus 687 MVEs~q~ddsEq 698 (791)
T KOG1222|consen 687 MVESQQRDDSEQ 698 (791)
T ss_pred HHHHhhccchhh
Confidence 777666555544
No 23
>PRK09687 putative lyase; Provisional
Probab=99.71 E-value=2.6e-15 Score=131.27 Aligned_cols=256 Identities=13% Similarity=0.118 Sum_probs=203.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
--++.|..+|.+++ ..++..++++|..+-. ..+++.+..++.++++.+|..++++|+.+......
T Consensus 23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 35788999999999 8999999999998764 23567888889999999999999999998643211
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~ 198 (447)
....++.|..++.++++..++..++.+|.+++...... ...+++.+...+.++++.|+..++++|+.+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 11246677777668889999999999999997544222 23456667788888999999999999976641
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228 199 DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI 278 (447)
Q Consensus 199 ~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl 278 (447)
. ..++.|+.+|.++++.+|..|+.+|+.+...++ ..++.|+..+.+. +..||..|+++|+.+
T Consensus 158 ~--------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 E--------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR 219 (280)
T ss_pred H--------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence 1 257899999999999999999999999843333 3456789999988 999999999999996
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHH
Q 013228 279 TAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL-CADPEIVTVFL 357 (447)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~a~ 357 (447)
- ++. .+|.|++.+.+++ ++..++.+|+++... ..++.|.++++ +.|+.++..+.
T Consensus 220 ~--~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 K--DKR---------VLSVLIKELKKGT--VGDLIIEAAGELGDK------------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred C--Chh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHH
Confidence 2 232 7888999998755 778899999998652 15888888886 78899999998
Q ss_pred HHHHH
Q 013228 358 KGLEK 362 (447)
Q Consensus 358 ~~l~~ 362 (447)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 88764
No 24
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=7.2e-14 Score=136.41 Aligned_cols=356 Identities=16% Similarity=0.124 Sum_probs=252.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHH
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS---EDTKVV 78 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~ 78 (447)
++..+|+++..|..|+..|..+...-+......+- .+.+.+.+.+.+++. .||..|+++++.++...+ ..+..+
T Consensus 124 ~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~~~~~~~~ 200 (1075)
T KOG2171|consen 124 FQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENNKSEVDKF 200 (1075)
T ss_pred HHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 45678999999999999999987653222222111 256777788888884 499999999999887443 333333
Q ss_pred HhCCChHHHHHhh----CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-cccchhHHHHHHHHHHHhc
Q 013228 79 IDHGAVPIFVKLL----ASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-KHAKLSMLRIATWTLSNFC 153 (447)
Q Consensus 79 ~~~~~i~~L~~ll----~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~L~~l~ 153 (447)
. ..+|.++..+ ..++......++.+|..+....+.+-..... .++...+.... +.-+..+|..|+.++..++
T Consensus 201 ~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~ 277 (1075)
T KOG2171|consen 201 R--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLS 277 (1075)
T ss_pred H--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 3 2455555544 4467777889999999998776654332221 13444444443 2347789999999999999
Q ss_pred CCCCCCCh---hhHhhhHHHHHHhhccC--C--------------hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 013228 154 AGKPKPIF---DQVRPALPALAQLVHSN--D--------------KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLV 214 (447)
Q Consensus 154 ~~~~~~~~---~~~~~~l~~l~~ll~~~--~--------------~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~ 214 (447)
+..|.... .....+++.++.++... | ..--..|..++-.++.+-+... +-.-+++.+-
T Consensus 278 e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~ 354 (1075)
T KOG2171|consen 278 EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLFEALE 354 (1075)
T ss_pred HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHHHHHH
Confidence 87532221 23356777777766521 1 1123446677777775544321 1123567777
Q ss_pred HhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 013228 215 ELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL 294 (447)
Q Consensus 215 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 294 (447)
.++.+.++.-|..++.+|+.++.+........++ .+++.++..|.++ ++.||..|+.+++.++.+-...++.-...-+
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l 432 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERL 432 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhc
Confidence 8889999999999999999999999877665544 6889999999999 9999999999999998865555666666668
Q ss_pred hHHHHHHHhcC-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 295 IGPLVNLLQNA-EFDIKNWAARAISNATFGGTHEQIKYLVREGCIK-PLCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 295 ~~~L~~~l~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~-~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
.+.|+..+.+. ++.++..|+.++.|++....++......+ ++++ .+..++.++.+.+++.++.+|.......+.
T Consensus 433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 88999998864 78999999999999999877666554333 4555 455566778889999999999999876554
No 25
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.69 E-value=5.2e-14 Score=129.34 Aligned_cols=402 Identities=16% Similarity=0.108 Sum_probs=274.3
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
.+.+.+++....|.....+.+.+. +++...+++.|.++.|+.+++..+ .++.+.+.+-++.....+.......+.+.+
T Consensus 17 ~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~ 95 (678)
T KOG1293|consen 17 RLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRII 95 (678)
T ss_pred hhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHh
Confidence 456778888999999999999886 555567999999999999997665 267777888888888888888899999999
Q ss_pred ChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhHHH--HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 83 AVPIFVKLLASPS-DDIREQAVCALGNVAADSARCRD--LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 83 ~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
.++.|++++.+++ ..++..+++++.++-..++.... ......+++.+..++ ..+.....+.-+....+++......
T Consensus 96 ~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~hq 174 (678)
T KOG1293|consen 96 ELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKDHQ 174 (678)
T ss_pred hHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccchhh
Confidence 9999999999988 89999999999999866542211 111222333333333 3344445555555566666554333
Q ss_pred ChhhHhhhHHHHHHhhccCChhHHHHHHHHHH---HhccCCcHHHHH----HHHhCcHH--HHHHhcCCCCchhHhHHHH
Q 013228 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALF---YLSEGTNDEIQA----VIEAGVCP--RLVELLGHPSPSVLTRALQ 230 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~---~l~~~~~~~~~~----~~~~~~~~--~L~~lL~~~~~~v~~~a~~ 230 (447)
......++.+.+.-++.......+..++.+++ ++..+++..... ..+.|+.+ .+.+++.+++...+..++.
T Consensus 175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~ 254 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE 254 (678)
T ss_pred heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence 33344677777777777778899999999999 777666543322 33446655 4666677777777777777
Q ss_pred HHHHhhcCChhh-------------HHH--------------------------------------HHhcCChHHHHHhh
Q 013228 231 TVVNIAAGDDFQ-------------TQC--------------------------------------IINCGALPYLLGLL 259 (447)
Q Consensus 231 ~l~~l~~~~~~~-------------~~~--------------------------------------~~~~~~l~~l~~~l 259 (447)
++..+...+... ... ..+....+...+++
T Consensus 255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell 334 (678)
T KOG1293|consen 255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL 334 (678)
T ss_pred HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence 777665443000 000 00011111111111
Q ss_pred ----------------------------------------------------ccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 013228 260 ----------------------------------------------------IHNHKKSIKTDACWTISNITAGNSEHIQ 287 (447)
Q Consensus 260 ----------------------------------------------------~~~~~~~v~~~a~~~l~nl~~~~~~~~~ 287 (447)
... +...+..|+.++.++++.-.....
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL~t 413 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSALRT 413 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHHHc
Confidence 011 333344444444444332111111
Q ss_pred HHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 288 ~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
.+-...+...|+.++..++..++..+..+|+|+...-+ +....+++.|+++.+.+++.+.++.++..++|+|++++-.+
T Consensus 414 g~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 414 GLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC 492 (678)
T ss_pred CCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence 12245678899999999999999999999999987533 45677899999999999999999999999999999998765
Q ss_pred hhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 368 EAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
.... ...+..-=+...+..+.++++..|++.+-.+++++..+
T Consensus 493 de~~------------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 493 DEEE------------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hHHH------------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 5432 22222222346677889999999999999999998765
No 26
>PRK09687 putative lyase; Provisional
Probab=99.67 E-value=3e-14 Score=124.58 Aligned_cols=255 Identities=15% Similarity=0.094 Sum_probs=197.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
--++.|..+|.+++..+|..++++|..+... .+++.+..++ .+.++.++..++++|+.+-.....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll-~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELC-SSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCccc---
Confidence 4578899999999999999999999987421 2356666766 788999999999999998653211
Q ss_pred hhHhhhHHHHHHh-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 162 DQVRPALPALAQL-VHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 162 ~~~~~~l~~l~~l-l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
....++.|..+ ++++++.|+..++.+|+++....... ....++.+...+.++++.||..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~ 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H
Confidence 34567888876 67889999999999999986433211 11245667788888999999999999976531 1
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
..++.|+.++.++ ++.+|..|+++|+.+...++. .++.|+..+.+.++.||..|+++|+.+
T Consensus 159 ---------~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 ---------AAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3677899999998 999999999999999544543 677789999999999999999999986
Q ss_pred cCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh
Q 013228 321 TFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR 400 (447)
Q Consensus 321 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~ 400 (447)
-. + .+++.|+..+.+++ ++..++.+|..+-. ...++.|.+++
T Consensus 220 ~~---~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~------------------------~~a~p~L~~l~ 261 (280)
T PRK09687 220 KD---K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD------------------------KTLLPVLDTLL 261 (280)
T ss_pred CC---h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC------------------------HhHHHHHHHHH
Confidence 43 2 26888899998876 45566666666532 23467777887
Q ss_pred c-CCCHHHHHHHHHHHHH
Q 013228 401 S-HDNDEIHEKSVKILET 417 (447)
Q Consensus 401 ~-~~~~~v~~~a~~~l~~ 417 (447)
+ ++++.+..+|.+.+++
T Consensus 262 ~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 262 YKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hhCCChhHHHHHHHHHhc
Confidence 5 8899999999998864
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.65 E-value=4.6e-14 Score=120.41 Aligned_cols=197 Identities=19% Similarity=0.263 Sum_probs=164.9
Q ss_pred hhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q 013228 35 VIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA 114 (447)
Q Consensus 35 ~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~ 114 (447)
..+.+-++.|+.+|+...+|.+++.++.++++.+. .+.+++.+.+.|+++.+..++.++++.++..|+++|.|++...+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 35667789999999976559999999999999988 88999999999999999999999999999999999999997766
Q ss_pred hHHHHHHhcCCHHHHHHHhccc-cchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228 115 RCRDLVLSEEALIPLLTQLNKH-AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL 193 (447)
Q Consensus 115 ~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l 193 (447)
. +..+.. .++.+++....+ -+..++..++.+|.+++..... .......+|.+++++.+++..++..++++|.|+
T Consensus 87 n-~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 N-QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred h-HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4 444432 477777765443 3788999999999999876522 233466899999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhCcHHHHHHhcCCC-CchhHhHHHHHHHHhhcC
Q 013228 194 SEGTNDEIQAVIEAGVCPRLVELLGHP-SPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~~l~~~ 238 (447)
+.++.. .+.++..+++..++.++... +.++...++..+.|+..+
T Consensus 162 S~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 976654 56788889999999999774 678899999999999643
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.64 E-value=1.6e-13 Score=117.12 Aligned_cols=238 Identities=19% Similarity=0.188 Sum_probs=185.8
Q ss_pred hhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhH
Q 013228 165 RPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQT 243 (447)
Q Consensus 165 ~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~ 243 (447)
.+-++.++.+|+. .|+.+++.++.++++.+..+.. ...+.+.|+++.+..++.++++.++..|+.++.|++...+...
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 5677889999985 5899999999999998866544 4678888999999999999999999999999999998665443
Q ss_pred HHHHhcCChHHHHHhh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 244 QCIINCGALPYLLGLL-IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 244 ~~~~~~~~l~~l~~~l-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
.+ +. .++.+.+.+ .++.+..++..+..+|.|++..+ +. +.++. +.++.++.++.+++..++..+..+|.|++.
T Consensus 90 -~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 90 -QI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred -HH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 23 32 455555543 44447789999999999997653 22 33332 379999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhhhhh-hhhcccccHHHHHHHHhc-hHHHHHHH
Q 013228 323 GGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKVGEAEKNM-DIAIGDVNQYAQLVEEAE-GLEKIENL 399 (447)
Q Consensus 323 ~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~-~~~~l~~l 399 (447)
++...+.++..+++..++.+++.. +.++...++..+.|+-+.-.+.... .......+.+...|.+.+ .-++|..+
T Consensus 164 --np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l 241 (254)
T PF04826_consen 164 --NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQAL 241 (254)
T ss_pred --CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHH
Confidence 678889999999999999999886 5688888999999996654433111 111234444557777766 67889999
Q ss_pred hcCCCHHHHHHH
Q 013228 400 RSHDNDEIHEKS 411 (447)
Q Consensus 400 ~~~~~~~v~~~a 411 (447)
..|++++|+.++
T Consensus 242 ~~h~d~ev~~~v 253 (254)
T PF04826_consen 242 ANHPDPEVKEQV 253 (254)
T ss_pred HcCCCHHHhhhc
Confidence 999999998764
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.63 E-value=2.3e-13 Score=139.14 Aligned_cols=269 Identities=18% Similarity=0.194 Sum_probs=207.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++.|.++++.+|..|+..|..+.. .+.++.|+.+|++++ +.||..|+.+|..+....+
T Consensus 627 ~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~--------- 684 (897)
T PRK13800 627 APYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP--------- 684 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---------
Confidence 456788899999999988887643 236888899998888 8999999999988753111
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
..+.|...|.++++.+|..++.+|..+.... ...++..| .+++..++..++.+|..+-.
T Consensus 685 -~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~------- 743 (897)
T PRK13800 685 -PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD------- 743 (897)
T ss_pred -chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-------
Confidence 2356777888889999999999888875322 23456666 78888999999999887521
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
.+.+..++.++++.|+..++.+|..+..... ..++.|..++.++++.+|..|+..|+.+.....
T Consensus 744 ------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~- 807 (897)
T PRK13800 744 ------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPPD- 807 (897)
T ss_pred ------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch-
Confidence 1346678899999999999999988864321 236778899999999999999999998754211
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~ 321 (447)
....+...+.++ ++.+|..|+++|+.+.. ++ .++.|+.++.+++..||..|+++|..+.
T Consensus 808 ---------~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 808 ---------DVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred ---------hHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 224578888888 89999999999988732 12 5688999999999999999999999972
Q ss_pred CCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 013228 322 FGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLE 361 (447)
Q Consensus 322 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~ 361 (447)
. ++. ..+.|...+++.+++++..+..+|.
T Consensus 867 ~--~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 G--DPA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C--CHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 2 332 3666778999999999999988875
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.63 E-value=4.1e-13 Score=137.28 Aligned_cols=277 Identities=15% Similarity=0.172 Sum_probs=218.6
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228 38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR 117 (447)
Q Consensus 38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~ 117 (447)
...++.|+..|++++ +.+|..|+..|+.+.. .+.++.|...|.++++.+|..++.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 457889999999999 9999999999998753 2467899999999999999999999988853221
Q ss_pred HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228 118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~ 197 (447)
..+.+...| .++++.++..++.+|..+.... ...++..|.++++.++..++.+|..+..
T Consensus 685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence 134666777 6788899999999998875321 2356788999999999999999987521
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
.+.|..++.++++.+|..++.+|+.+..... ..++.|..++.++ ++.+|..|+.+|+.
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~ 801 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE 801 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence 2346678999999999999999998865322 2367788999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228 278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL 357 (447)
Q Consensus 278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~ 357 (447)
+... +. ..+.+...+.++++.+|..|+++|..+... ..++.|..+|.++++.++..++
T Consensus 802 ~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 802 LGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred cCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence 8442 11 235577888889999999999999887431 2468899999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013228 358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET 417 (447)
Q Consensus 358 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 417 (447)
.+|..+ ... ....+.|...+++++++|+..|...|+.
T Consensus 860 ~aL~~~-~~~----------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 860 LALTRW-PGD----------------------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHhcc-CCC----------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999886 111 1124566678889999999999998863
No 31
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.63 E-value=5.9e-14 Score=138.51 Aligned_cols=362 Identities=18% Similarity=0.184 Sum_probs=270.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC---CHHHHHHHHHHHHHhhcCChhHHHH
Q 013228 43 RFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP---SDDIREQAVCALGNVAADSARCRDL 119 (447)
Q Consensus 43 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~i~~~a~~~L~~l~~~~~~~~~~ 119 (447)
.|..++...+ ++...+.+..++. +++....+...|.++.|++++..+ +.+.+..+-.+|.||....+..+..
T Consensus 201 sllsml~t~D----~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~ 275 (2195)
T KOG2122|consen 201 SLLSMLGTDD----EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG 275 (2195)
T ss_pred HHhhhcccCC----HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence 4444444444 5677778888888 788888999999999999999763 5688899999999999666543222
Q ss_pred HHhcCCHHH---HHHHhc--------c------ccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-----
Q 013228 120 VLSEEALIP---LLTQLN--------K------HAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS----- 177 (447)
Q Consensus 120 ~~~~~~l~~---l~~~l~--------~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~----- 177 (447)
=.+..++.. +..... . .++..-...|+.+|..++.+.+.+.....-|++..+..|+.-
T Consensus 276 RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mh 355 (2195)
T KOG2122|consen 276 RREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMH 355 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 111122222 211111 1 112223445677777888777666666667888887777651
Q ss_pred -------CChhHHHHHHHHHHHhccCCcHHHHHHHH-hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh-HHHHHh
Q 013228 178 -------NDKEVMTDACRALFYLSEGTNDEIQAVIE-AGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ-TQCIIN 248 (447)
Q Consensus 178 -------~~~~v~~~al~~l~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~ 248 (447)
....++.++..+|.||...+......+.. .|++..++..|.+..+++..-...+|.||+=..+.. .+.+-+
T Consensus 356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE 435 (2195)
T KOG2122|consen 356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE 435 (2195)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh
Confidence 12578999999999999877665555543 499999999999988888888899999997444433 445556
Q ss_pred cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcC----chhHHHHHHHHHHHhcCC
Q 013228 249 CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNA----EFDIKNWAARAISNATFG 323 (447)
Q Consensus 249 ~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~----~~~v~~~a~~aL~~l~~~ 323 (447)
.|-+..|...--........+..+.+|+||+.+..++...+.. .|.+..|+.+|..+ ...+.+.|...|.|.+..
T Consensus 436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~ 515 (2195)
T KOG2122|consen 436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL 515 (2195)
T ss_pred hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence 7777777776544436677788899999999887777777775 78999999999853 457788899999887652
Q ss_pred --CCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228 324 --GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS 401 (447)
Q Consensus 324 --~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~ 401 (447)
...++++.+.+..++..|++.|++..-.++..+++.|.||.-.+... .+.+-+.|++..|.+|.+
T Consensus 516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-------------Qq~LwD~gAv~mLrnLIh 582 (2195)
T KOG2122|consen 516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-------------QQMLWDDGAVPMLRNLIH 582 (2195)
T ss_pred hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-------------HHHHHhcccHHHHHHHHh
Confidence 24567888889999999999999999999999999999998776654 467788999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCC
Q 013228 402 HDNDEIHEKSVKILETYWCGR 422 (447)
Q Consensus 402 ~~~~~v~~~a~~~l~~~~~~~ 422 (447)
+.+.++-+-+...|.+++...
T Consensus 583 SKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 583 SKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999888876543
No 32
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.6e-13 Score=125.94 Aligned_cols=316 Identities=15% Similarity=0.155 Sum_probs=224.7
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 013228 38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH----GAVPIFVKLLASPSDDIREQAVCALGNVAADS 113 (447)
Q Consensus 38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~ 113 (447)
..++|.|+++|.+++ ...++-|..+|.+++.++++.-+.-... -.+|.++++.+++++.+|..|+.++..+....
T Consensus 127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 357899999999999 7899999999999999877655442222 25788889999999999999999999887544
Q ss_pred hhHHHHHHhc-CCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHH
Q 013228 114 ARCRDLVLSE-EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFY 192 (447)
Q Consensus 114 ~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~ 192 (447)
+. ...... .+++.+..+- ++.+++++.+.|.++..|....+........+++..+++..++.|++|...||.....
T Consensus 206 ~q--al~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 206 TQ--ALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred cH--HHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 32 122221 1344444444 7889999999999999999887777777779999999999999999999999999999
Q ss_pred hccCCcHHHHHHHH--hCcHHHHHHhcCCC--------------------------------------------------
Q 013228 193 LSEGTNDEIQAVIE--AGVCPRLVELLGHP-------------------------------------------------- 220 (447)
Q Consensus 193 l~~~~~~~~~~~~~--~~~~~~L~~lL~~~-------------------------------------------------- 220 (447)
+++.+... ..+.. ..++|.|+.-+...
T Consensus 283 ~aeqpi~~-~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 283 LAEQPICK-EVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HhcCcCcH-HHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 99766321 21211 14566665544211
Q ss_pred ------CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc--
Q 013228 221 ------SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDA-- 292 (447)
Q Consensus 221 ------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~-- 292 (447)
++.+|+.++.+|.-++..-. +.++. -++|.|-+.|.+. +..+|+.++.+++.++.+.-+ -++..
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~---g~~p~Lp 433 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQ---GFVPHLP 433 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhh---hcccchH
Confidence 03456555555555443222 11222 2456666667777 999999999999999875432 22221
Q ss_pred CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHH-HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI-KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
.++|.|+++|.+..+-||..++|+|+..+..--.+.. +++.. ++..|...+-+++..++++|+.++..+-+...
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 2789999999999999999999999998764211112 22222 46666666678889999999999998876543
No 33
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=5.4e-12 Score=123.59 Aligned_cols=357 Identities=16% Similarity=0.185 Sum_probs=251.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCC--CCchhhhhccCCHHHHHH----hhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNAR--SAPTEEVIPFGVVPRFVE----FLMREDYPQLQFEAAWALKNIVSGTSEDTK 76 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~~v~~L~~----ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 76 (447)
+.+++++..++..|++++..++.... ....+.+. ..+|.++. .++.++ .+....++.+|..++...+....
T Consensus 166 q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d-~~~a~~~l~~l~El~e~~pk~l~ 242 (1075)
T KOG2171|consen 166 QTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGD-DDAAKSALEALIELLESEPKLLR 242 (1075)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccc-hHHHHHHHHHHHHHHhhchHHHH
Confidence 45666666699999999998876541 22223332 25555554 445566 67788999999999987777655
Q ss_pred HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHHh--cCCHHHHHHHhcc---c-----------cc
Q 013228 77 VVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRDLVLS--EEALIPLLTQLNK---H-----------AK 138 (447)
Q Consensus 77 ~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~---~-----------~~ 138 (447)
..+. .++..-+....+ -++.+|..|+.+|..++...|...+.... ...++.++.++.. + .+
T Consensus 243 ~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 243 PHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 5543 356666666665 37899999999999999775544333222 1234444444421 0 01
Q ss_pred -hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 013228 139 -LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL 217 (447)
Q Consensus 139 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL 217 (447)
..-...|..++-.++.+- ........+++.+-.++++++..-|..++.+|+-++++..+.....+ ..+++..+..|
T Consensus 322 ~~~~~~~A~~~lDrlA~~L--~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHL--GGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGL 398 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcC--ChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhc
Confidence 124455667777777653 22334466778888899999999999999999999998877665433 35888899999
Q ss_pred CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChH
Q 013228 218 GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIG 296 (447)
Q Consensus 218 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~ 296 (447)
.++++.||..|+.+++.++..-....+.-....+++.|+..+.+..+.+++..|+.++-|++.. ..+.+...++. ++.
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~-lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG-LME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHH
Confidence 9999999999999999999765555555556678889999999887889999999999999873 44444444443 555
Q ss_pred -HHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC----HHHHHHHHHHHHHHHHhhhh
Q 013228 297 -PLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD----PEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 297 -~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----~~~~~~a~~~l~~l~~~~~~ 369 (447)
.+..+++++.+.+++.++.+|+..+........+++-. .++.|...|...+ ..++..+++++.-+.....+
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 45555667889999999999999998665555565544 6888888887654 25666777777776654443
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.60 E-value=6.1e-13 Score=122.41 Aligned_cols=356 Identities=13% Similarity=0.070 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH--HhCCChHHH
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVV--IDHGAVPIF 87 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~i~~L 87 (447)
.+.+.+.+..+.....++ ......+.+.+.++.|.+++++++...+++..++++..+...++..-... ....++..+
T Consensus 67 ~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~ 145 (678)
T KOG1293|consen 67 TELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKF 145 (678)
T ss_pred hhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 555555666666677765 66778889999999999999888856899999999999988554332222 222344555
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH---HhcCCCCCCChhhH
Q 013228 88 VKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS---NFCAGKPKPIFDQV 164 (447)
Q Consensus 88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~ 164 (447)
.-++..+...+.+.-+...+++|... ..+..+...++.+.+.-++ .......+..+..+++ .+..+++.......
T Consensus 146 s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l 223 (678)
T KOG1293|consen 146 SLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLL 223 (678)
T ss_pred HHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHHhhccceeeecCchhHHHHH
Confidence 55544344455555555556666544 3555666666666655555 5666788888998888 66666544444332
Q ss_pred -----hhhHH--HHHHhhccCChhHHHHHHHHHHHhccCCc-------------H---H-HH------------------
Q 013228 165 -----RPALP--ALAQLVHSNDKEVMTDACRALFYLSEGTN-------------D---E-IQ------------------ 202 (447)
Q Consensus 165 -----~~~l~--~l~~ll~~~~~~v~~~al~~l~~l~~~~~-------------~---~-~~------------------ 202 (447)
.++.+ .+.+++++++.+.+..++.++.++...+- . . .+
T Consensus 224 ~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~ 303 (678)
T KOG1293|consen 224 GLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHT 303 (678)
T ss_pred HHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhh
Confidence 34444 34556666666666666666655543220 0 0 00
Q ss_pred ----------------HHHHhCcHHHHHHhc-------------------------------------------------
Q 013228 203 ----------------AVIEAGVCPRLVELL------------------------------------------------- 217 (447)
Q Consensus 203 ----------------~~~~~~~~~~L~~lL------------------------------------------------- 217 (447)
...+....+.+.+++
T Consensus 304 ~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~ 383 (678)
T KOG1293|consen 304 NVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLM 383 (678)
T ss_pred hhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHc
Confidence 000001111111111
Q ss_pred ---CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 013228 218 ---GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL 294 (447)
Q Consensus 218 ---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 294 (447)
...+..++.+++.++-++++........+-...+...+++++..+ +..++..+.++++|+...-......++..|+
T Consensus 384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 112335666677777776654443333344557889999999888 9999999999999999866677789999999
Q ss_pred hHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 295 IGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 295 ~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
++.+.+++.+.++.+|..+.|+|.++..+++......+...-....+..+.+++++.+++.++..++|+....++
T Consensus 463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 463 IDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 999999999999999999999999999987666555555555566778888999999999999999999987544
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.55 E-value=8.4e-13 Score=129.13 Aligned_cols=352 Identities=16% Similarity=0.209 Sum_probs=226.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 83 (447)
-|.++++.++..|++++.++...+ +. ..+++.+.+++.+++ +.||..|+.++..+....++... .. .
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~~~~-------~~-~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~---~~-~ 153 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIRTPE-------MA-EPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE---DE-L 153 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH-SHH-------HH-HHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH---GG-H
T ss_pred hhcCCCHHHHHHHHhhhhhhcccc-------hh-hHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH---HH-H
Confidence 456777888888888887776331 12 225777788888888 78888888888888765554322 22 5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc---cccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN---KHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
++.+.+++.++++.++..|+.++..+ ..++.... ..++.++..|. ...++-.+..++.++..++...
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~---- 223 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME---- 223 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS----
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC----
Confidence 77888888878888888888888888 22221100 23344444432 5566667777777777766443
Q ss_pred hhhH--hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 161 FDQV--RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 161 ~~~~--~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
.... ..+++.+..++++.++.+...++.++..+..... .-..+++.|..++.++++.++..++..+..++..
T Consensus 224 ~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 224 PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 2222 5677888888888888888888888888775433 2235678888999988888999999999998876
Q ss_pred ChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHH
Q 013228 239 DDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARA 316 (447)
Q Consensus 239 ~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~a 316 (447)
.+. .+. .....+..+. ++ +..+|..++..+..++. +.+... +++.|...+. ..+++++..++..
T Consensus 298 ~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~ 363 (526)
T PF01602_consen 298 NPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKA 363 (526)
T ss_dssp CHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHH
T ss_pred cch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHH
Confidence 621 122 2233344555 55 88899999999888865 344444 4666777774 4477888888888
Q ss_pred HHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHH
Q 013228 317 ISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKI 396 (447)
Q Consensus 317 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 396 (447)
++.++....+ .... .++.+++++...++.+...+...+.+++...+..+ ... ++.+
T Consensus 364 I~~la~~~~~-~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~------l~~L 419 (526)
T PF01602_consen 364 IGDLAEKFPP-DAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI------LKKL 419 (526)
T ss_dssp HHHHHHHHGS-SHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH------HHHH
T ss_pred HHHHHhccCc-hHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH------HHHH
Confidence 8888763211 1111 36677777777666666667777777765543321 111 2233
Q ss_pred HHH-hcCCCHHHHHHHHHHHHHhcCCC
Q 013228 397 ENL-RSHDNDEIHEKSVKILETYWCGR 422 (447)
Q Consensus 397 ~~l-~~~~~~~v~~~a~~~l~~~~~~~ 422 (447)
.++ ..-.++++...+.|++.+|.+..
T Consensus 420 ~~~l~~~~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 420 IELLEDISSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp HHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence 332 33566777788888888776543
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.53 E-value=4.4e-11 Score=108.92 Aligned_cols=321 Identities=14% Similarity=0.175 Sum_probs=230.4
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhc-----CCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 82 GAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSE-----EALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 82 ~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
..+..++.++.. ..+++.+.++..+.-+....+.....+.+. ....+++.+| ...|.-+...++.+++.+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 456777777765 678999999999999998877655555543 4677888888 567888999999999999876
Q ss_pred CCCCChh-hHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CchhHhHHHHH
Q 013228 156 KPKPIFD-QVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP--SPSVLTRALQT 231 (447)
Q Consensus 156 ~~~~~~~-~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~ 231 (447)
.+..... .....++.+...++++ +...+.-++.++..+...+..+ ..+.+.++++.|..+|+.. ....+..++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 5332221 1223444556666654 4667777889999999777665 5677888999999999763 45788899999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHcCChHHHHHHHhc-
Q 013228 232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGN------SEHIQAVIDAGLIGPLVNLLQN- 304 (447)
Q Consensus 232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~------~~~~~~l~~~~~~~~L~~~l~~- 304 (447)
++-++...+ ........+.++.++++++....+++.+-++.++.|+...+ ......+++.|+.+ ++..|..
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~r 288 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQR 288 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcC
Confidence 999987555 44556677999999999987768889999999999998742 12334556666655 4444442
Q ss_pred --CchhHHHHHHH-------HHHHhcC--------------CC--------CHHHHHHHHHcC--ChHHHHhhcc-CCCH
Q 013228 305 --AEFDIKNWAAR-------AISNATF--------------GG--------THEQIKYLVREG--CIKPLCDLLL-CADP 350 (447)
Q Consensus 305 --~~~~v~~~a~~-------aL~~l~~--------------~~--------~~~~~~~l~~~~--~l~~L~~ll~-~~~~ 350 (447)
.|+++...... -+..++. .+ -.++...|.+.+ ++..|+++|+ +.|+
T Consensus 289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 35554322211 1112221 00 123455555544 3678888884 5678
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228 351 EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419 (447)
Q Consensus 351 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (447)
.+...|+.=++.+++.-+.. +..+...|+-+.+.+|++|++++|+..|..+++++.
T Consensus 369 ~~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred ceeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88888888899999876543 677889999999999999999999999999998764
No 37
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8.6e-13 Score=121.28 Aligned_cols=321 Identities=19% Similarity=0.223 Sum_probs=218.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcC----CHHHHHHHhccccchhHHHHHHHHHHHhcCCCC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEE----ALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP 157 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~----~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (447)
.+++.|.++|.+++....+.|..+|..+|.+++..-+.-.... .++.+++.. +++++.++..|..++..+.-..+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 4678999999999999999999999999998876433311122 366777777 77789999999999988776554
Q ss_pred CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 158 KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
..-.......+..+..+-.+.+++||+..|.++..+.+...++.... -.++++.++...++.++.|...||.....++.
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 44444457788888888899999999999999999987655543211 23788888888899999999999999999987
Q ss_pred CChhhHHHHHh---cCChHHHHHhhccCCc------------------hhHHH---------------------------
Q 013228 238 GDDFQTQCIIN---CGALPYLLGLLIHNHK------------------KSIKT--------------------------- 269 (447)
Q Consensus 238 ~~~~~~~~~~~---~~~l~~l~~~l~~~~~------------------~~v~~--------------------------- 269 (447)
... . +.++. ..++|.|+.-+..++. .++|.
T Consensus 286 qpi-~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 286 QPI-C-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred CcC-c-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 552 2 22221 2455666554432100 00000
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH----hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh
Q 013228 270 --DACWTISNITAGNSEHIQAVIDAGLIGPLVNLL----QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCD 343 (447)
Q Consensus 270 --~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l----~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ 343 (447)
..-|-|..++...-+....++...+++.++.++ .+++..+|+.+..+++.++.++-......+-+ .++.|++
T Consensus 364 D~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe--Lip~l~~ 441 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE--LIPFLLS 441 (885)
T ss_pred cccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--HHHHHHH
Confidence 011333333333233333344444555555554 46789999999999999998764433344332 6899999
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 344 LLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 344 ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
+|.++.+-+|...+|.|.++....-.... .+.|. ..++-|.+-.-+.|.+|+++|.....++-+.
T Consensus 442 ~L~DKkplVRsITCWTLsRys~wv~~~~~-----------~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 442 LLDDKKPLVRSITCWTLSRYSKWVVQDSR-----------DEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HhccCccceeeeeeeeHhhhhhhHhcCCh-----------HhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999876543321 11121 1122223334467899999999999988443
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.53 E-value=4.5e-13 Score=103.14 Aligned_cols=119 Identities=32% Similarity=0.507 Sum_probs=110.2
Q ss_pred hhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 013228 34 EVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADS 113 (447)
Q Consensus 34 ~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~ 113 (447)
.+++.|+++.+++++.+++ +.++..++++|.+++..+++....+.+.|+++.++.++.++++.++..++++|++++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999998 899999999999999988999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228 114 ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA 154 (447)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (447)
+..+..+...|+++.++..+ .+.+..+++.++|++.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 87788888899999999999 66688999999999999873
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.51 E-value=3.9e-12 Score=124.47 Aligned_cols=324 Identities=18% Similarity=0.190 Sum_probs=237.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++++.+.+...+.-+.-++..+.... ++ .-.+ +++.+.+-|++++ +.++..|+++++++.. ++....
T Consensus 48 i~l~~s~~~~~Krl~yl~l~~~~~~~-~~-~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~~---- 114 (526)
T PF01602_consen 48 IKLISSKDLELKRLGYLYLSLYLHED-PE-LLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAEP---- 114 (526)
T ss_dssp HCTCSSSSHHHHHHHHHHHHHHTTTS-HH-HHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHHH----
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhcc-hh-HHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhhH----
Confidence 46677888888888888888877653 22 1111 5677788888988 8999999999999984 555443
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
+++.+.+++.++++.+|+.|+.++..+....|.. +... .++.+.+++ .+.++.++..|+.++..+ ...+....
T Consensus 115 -l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~ 187 (526)
T PF01602_consen 115 -LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYK 187 (526)
T ss_dssp -HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred -HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhh
Confidence 3677888999999999999999999998665542 2222 477788888 788899999999999999 22111111
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
......++.+.+++...++-.+..+++.+..++......... ..+++.+..++.+.++.+...++.++..+....+
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~- 263 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE- 263 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-
Confidence 344666777777778889999999999999988665543311 4567888888888889999999999998776443
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHh
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNA 320 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l 320 (447)
.-..+++.+..++.++ ++.++..++.++..++...+... . .....+..+. +++..+|..++..|..+
T Consensus 264 -----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp -----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred -----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence 2224677899999988 99999999999999988653322 2 2222334455 78999999999999999
Q ss_pred cCCCCHHHHHHHHHcCChHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 321 TFGGTHEQIKYLVREGCIKPLCDLL-LCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 321 ~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
+. +.+... +++.|...+ +..+++++..++..+..++.....
T Consensus 332 ~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 332 AN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp -----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred cc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 85 344444 477788888 455888999999999988876544
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.50 E-value=1e-12 Score=101.17 Aligned_cols=117 Identities=34% Similarity=0.526 Sum_probs=109.7
Q ss_pred HHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228 204 VIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS 283 (447)
Q Consensus 204 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~ 283 (447)
+.+.|+++.++.++.++++.++..+++++++++...+.....+.+.++++.+++++.++ ++.++..++|+|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56789999999999999999999999999999998888888889999999999999998 99999999999999999877
Q ss_pred HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228 284 EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321 (447)
Q Consensus 284 ~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~ 321 (447)
.....+.+.|+++.+++++..++..++..++++|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77888889999999999999999999999999999986
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.48 E-value=2.8e-11 Score=110.18 Aligned_cols=312 Identities=12% Similarity=0.057 Sum_probs=217.1
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhc-----cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIP-----FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-----~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
.+.++....+..+..++... +.....+.+ ......++.+|..++ .-++..++.+|+.+....+.........-
T Consensus 66 ~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~~~~~~~~~l~~ 143 (429)
T cd00256 66 DKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFGLAKMEGSDLDY 143 (429)
T ss_pred CcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcCccccchhHHHH
Confidence 45677777777777777763 444444444 356778888998888 79999999999999864443211111111
Q ss_pred ChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHhcCCCCCCC
Q 013228 83 AVPIFVKLLASP-SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 83 ~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.++.+...+.++ +...+..++.+|..+....+ +|..+.+.++++.++..|.... +.+++.+++.++|-++...+...
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 334555566553 57888888999999987765 7888888889999999996555 67899999999999998864333
Q ss_pred hhhHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCc------HHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHH-
Q 013228 161 FDQVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTN------DEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQ- 230 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~------~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~- 230 (447)
.....++++.++.+++.. .+++..-++.++.|+...+. .....+++.|+.+.+-.+... .++++....-.
T Consensus 223 ~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L 302 (429)
T cd00256 223 VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFL 302 (429)
T ss_pred hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 333478999999999854 68899999999999997431 222345666665554444432 34433222111
Q ss_pred ------HHHHhhcC--------------Ch---------hhHHHHHhc--CChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228 231 ------TVVNIAAG--------------DD---------FQTQCIINC--GALPYLLGLLIHNHKKSIKTDACWTISNIT 279 (447)
Q Consensus 231 ------~l~~l~~~--------------~~---------~~~~~~~~~--~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~ 279 (447)
.+..++.. +| +....+-+. .++..|+++|..+.++.+..-||.=++.++
T Consensus 303 ~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~v 382 (429)
T cd00256 303 TEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYV 382 (429)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHH
Confidence 11111111 11 112222222 357889999965548888899999999999
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 280 AGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
...|..+..+-+.|+=..+++++.++|++||.+|+.++..+..
T Consensus 383 r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 383 RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9878878777789999999999999999999999999987753
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=99.45 E-value=9.7e-10 Score=108.01 Aligned_cols=366 Identities=13% Similarity=0.090 Sum_probs=217.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++++.++|..++.-..-++.+.+... ++.. + -+++.+.+-+++++ +.+|..|+++|+++-. ++....
T Consensus 74 vk~~~S~d~elKKLvYLYL~~ya~~~-pela--l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~---- 140 (746)
T PTZ00429 74 VKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY---- 140 (746)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH----
Confidence 34556666666666666666665432 1111 1 14666777777777 8888888888888765 333322
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
++..+.+.+.+.++.||+.|+.++.++...++. .+...+.++.+..+| .+.|+.+..+|+.+|..+....+. ..
T Consensus 141 -l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~-~l 214 (746)
T PTZ00429 141 -TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSE-KI 214 (746)
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCch-hh
Confidence 346677778888999999999999998765553 334556777888877 788889999999999999866543 23
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC-h
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD-D 240 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~-~ 240 (447)
......+..++..+..-++-.+...+.+|......++... ..++..+...|.+.++.|...|++++.++.... +
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 3445666667777766677677777777765432222211 256788888899999999999999999887543 2
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------------------------c--
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID--------------------------A-- 292 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------------------------~-- 292 (447)
.....+.. .+-..++.++ ++ +++++..+...+.-+....+.....-++ .
T Consensus 290 ~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv 366 (746)
T PTZ00429 290 ELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVA 366 (746)
T ss_pred HHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccH
Confidence 22222211 1223444443 44 5677777766665554433322111000 0
Q ss_pred -CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228 293 -GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK 371 (447)
Q Consensus 293 -~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 371 (447)
.++..|.+...+.+.++++.++.+++.++..- +.... .++..|++++..... +...++..+.++++..++
T Consensus 367 ~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~-- 437 (746)
T PTZ00429 367 PEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPE-- 437 (746)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCcc--
Confidence 02333444444455666666666666666532 22222 246666666654333 333455555555543211
Q ss_pred hhhhhcccccHHHHHHHHhchHHHHHHH---hcCCCHHHHHHHHHHHHHhcCC
Q 013228 372 NMDIAIGDVNQYAQLVEEAEGLEKIENL---RSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 372 ~~~~~~~~~~~~~~~i~~~~~~~~l~~l---~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
.. .+..|... ..-.+++.+....|++..|.+.
T Consensus 438 ------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~ 472 (746)
T PTZ00429 438 ------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF 472 (746)
T ss_pred ------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence 00 12333221 2335677777778999988764
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.41 E-value=1.9e-09 Score=105.97 Aligned_cols=362 Identities=11% Similarity=0.049 Sum_probs=227.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 83 (447)
-++++|+.+|-.|++.+.++-... +++ -+++.+.+.+.+.+ +-||..|+.++.++...+++ .+.+.|.
T Consensus 113 Dl~d~Np~IRaLALRtLs~Ir~~~-------i~e-~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~pe---lv~~~~~ 180 (746)
T PTZ00429 113 DTTNSSPVVRALAVRTMMCIRVSS-------VLE-YTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDDMQ---LFYQQDF 180 (746)
T ss_pred HcCCCCHHHHHHHHHHHHcCCcHH-------HHH-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCcc---cccccch
Confidence 456777888888877776654321 111 25666778888888 99999999999999875553 3445678
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ 163 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (447)
++.|..++.+.++.+..+|+.+|..+....+.. .-...+.+..++..+ ...++=.+...+.+| +...|... ..
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L-~e~~EW~Qi~IL~lL---~~y~P~~~-~e 253 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHL-PECNEWGQLYILELL---AAQRPSDK-ES 253 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHh-hcCChHHHHHHHHHH---HhcCCCCc-HH
Confidence 899999999999999999999999998665432 112233456667766 333443444444444 33333222 22
Q ss_pred HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh
Q 013228 164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ 242 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 242 (447)
...++..+...|++.++.|...+++++.++....+ ....... ..+...++.+ .+.++.++..+++.+.-+....+..
T Consensus 254 ~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~l 331 (746)
T PTZ00429 254 AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNL 331 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHH
Confidence 36778888889999999999999999999985532 2222111 1223445555 3456778888877776665544321
Q ss_pred HHHHHh--------------------------c---CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 013228 243 TQCIIN--------------------------C---GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAG 293 (447)
Q Consensus 243 ~~~~~~--------------------------~---~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~ 293 (447)
...-++ . .++.-|.+...+. +.++++.++.+++.++...+.... .
T Consensus 332 f~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~-D~ef~r~aIrAIg~lA~k~~~~a~-----~ 405 (746)
T PTZ00429 332 LRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGV-DMVFVVEVVRAIASLAIKVDSVAP-----D 405 (746)
T ss_pred HHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhChHHHH-----H
Confidence 111000 0 1223333344444 677888888888888765444222 3
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc---cCCCHHHHHHHHHHHHHHHHhhhhh
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL---LCADPEIVTVFLKGLEKILKVGEAE 370 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~~~~~a~~~l~~l~~~~~~~ 370 (447)
++..|++++..+.. +..+++.++.++.... ++. ..+..|+..+ .-.+++.+...+|+|+.+...-++
T Consensus 406 cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrky-P~~-------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~- 475 (746)
T PTZ00429 406 CANLLLQIVDRRPE-LLPQVVTAAKDIVRKY-PEL-------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN- 475 (746)
T ss_pred HHHHHHHHhcCCch-hHHHHHHHHHHHHHHC-ccH-------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-
Confidence 56678888875433 4557788888887643 221 1355555543 235678888889999987653211
Q ss_pred hhhhhhcccccHHHHHHHHhchHHHHHHHh---cCCCHHHHHHHHHHHHHhcCCCC
Q 013228 371 KNMDIAIGDVNQYAQLVEEAEGLEKIENLR---SHDNDEIHEKSVKILETYWCGRV 423 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~---~~~~~~v~~~a~~~l~~~~~~~~ 423 (447)
+...|..+. ...+++|+.......-++|-...
T Consensus 476 ---------------------a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p 510 (746)
T PTZ00429 476 ---------------------GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDP 510 (746)
T ss_pred ---------------------HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 123333333 34568888887777777775443
No 44
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.2e-10 Score=110.31 Aligned_cols=337 Identities=17% Similarity=0.153 Sum_probs=238.7
Q ss_pred cccccCC-CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGVWSD-DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
|.+|+.+ +.+++..|+++|..++.-- +.....+++.++||.|+.-|..-..-++.++++.+|-.++... -..+.+
T Consensus 217 v~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~ 292 (1051)
T KOG0168|consen 217 VALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQ 292 (1051)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHh
Confidence 4556654 4899999999999998765 6677888999999999987766555899999999999999843 456889
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSA-RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
+|++...+.+++--+..+++.|+.+..|+|..-+ .-...++ ..+|.|..+| +..|....+.++.++..++......
T Consensus 293 AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lL-s~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 293 AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLL-SYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHH-hhccchhHHHHHHHHHHHHHhcccC
Confidence 9999999999988889999999999999994322 1223333 3688888888 7778889999999999998776222
Q ss_pred Chhh----HhhhHHHHHHhhccCC----hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc---------
Q 013228 160 IFDQ----VRPALPALAQLVHSND----KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP--------- 222 (447)
Q Consensus 160 ~~~~----~~~~l~~l~~ll~~~~----~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~--------- 222 (447)
.... ..+++..+.+++.-.+ ..+-.-.++.+.-++..++.....+.+.++...|..+|...+.
T Consensus 370 ~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~ 449 (1051)
T KOG0168|consen 370 PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHEL 449 (1051)
T ss_pred hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccc
Confidence 2221 2677777777776442 3444556777888887777666777788888888877743110
Q ss_pred -----hhHhHHH----------------------------------------------------HHHHHh----------
Q 013228 223 -----SVLTRAL----------------------------------------------------QTVVNI---------- 235 (447)
Q Consensus 223 -----~v~~~a~----------------------------------------------------~~l~~l---------- 235 (447)
.-..... +.+..+
T Consensus 450 l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~ 529 (1051)
T KOG0168|consen 450 LSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQ 529 (1051)
T ss_pred cccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhh
Confidence 0000000 001100
Q ss_pred ------------hcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CChHHHHHH
Q 013228 236 ------------AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDA-GLIGPLVNL 301 (447)
Q Consensus 236 ------------~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~-~~~~~L~~~ 301 (447)
....++..+.++. ..++.|+++..+..++.||..+..+|..+.. .+.+.++.++.. .+-..+-.+
T Consensus 530 ~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~ 608 (1051)
T KOG0168|consen 530 QDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGM 608 (1051)
T ss_pred hhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhh
Confidence 0001111121222 4688888888887799999999999998876 566777777764 455567778
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc
Q 013228 302 LQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL 346 (447)
Q Consensus 302 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 346 (447)
+.++|..+..-|+...--+...-..-....|.+.|++..+-++..
T Consensus 609 lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 609 LSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred hhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 888898887777776666665534445577788898888888776
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.5e-10 Score=106.13 Aligned_cols=355 Identities=18% Similarity=0.184 Sum_probs=238.6
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF 87 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 87 (447)
++..+|+.|+.+|.+-+...+...-+..-+.-++...++.-++++ .+++..|..||..+..-..++....+....+..-
T Consensus 186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfait 264 (859)
T KOG1241|consen 186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAIT 264 (859)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998776532223334444456777788888888 8999999999999998777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChhH----HH-----------HH---HhcCCHHHHHHHhcc-c-----cchhHHH
Q 013228 88 VKLLASPSDDIREQAVCALGNVAADSARC----RD-----------LV---LSEEALIPLLTQLNK-H-----AKLSMLR 143 (447)
Q Consensus 88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~----~~-----------~~---~~~~~l~~l~~~l~~-~-----~~~~~~~ 143 (447)
+..+.++++++.-+++...+++|...-.. .+ .+ .-.+++|.|+++|.+ + .+...-.
T Consensus 265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k 344 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK 344 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence 88888999999999999999998532110 00 00 112457778888854 1 2345566
Q ss_pred HHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCch
Q 013228 144 IATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPS 223 (447)
Q Consensus 144 ~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 223 (447)
.|..||.-++....+ ..+..++|.+-.-++++|..-++.+..+++.+...++...-.-+-.++++.++.++.+++--
T Consensus 345 AAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 345 AAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence 666666655543211 23357788888888899999999999999999987765544444568899999999998888
Q ss_pred hHhHHHHHHHHhhcCChhhHH-HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHH---------HHHHHcC
Q 013228 224 VLTRALQTVVNIAAGDDFQTQ-CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI---------QAVIDAG 293 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~---------~~l~~~~ 293 (447)
++..+.|+++.++.+.++.+. .......++.++..|.+ .+.+...+||++.+++.+-.+.. ..+.+.
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~- 498 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEA- 498 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHH-
Confidence 999999999999987764322 22233556667777754 58899999999999984211110 011111
Q ss_pred ChHHHHHHHhc---CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc--CChHHHHh-----hccCCC----HHHHHHHHHH
Q 013228 294 LIGPLVNLLQN---AEFDIKNWAARAISNATFGGTHEQIKYLVRE--GCIKPLCD-----LLLCAD----PEIVTVFLKG 359 (447)
Q Consensus 294 ~~~~L~~~l~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~l~~L~~-----ll~~~~----~~~~~~a~~~ 359 (447)
++..|+..... .+..+|..|..+|..+..+...+....+... -.+..|-+ .+...+ .+++...+..
T Consensus 499 ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~ 578 (859)
T KOG1241|consen 499 IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNT 578 (859)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH
Confidence 34444444443 3578999999999999998765554433220 11222222 222222 2566666677
Q ss_pred HHHHHHhhhh
Q 013228 360 LEKILKVGEA 369 (447)
Q Consensus 360 l~~l~~~~~~ 369 (447)
|..+++....
T Consensus 579 Lq~i~rk~~~ 588 (859)
T KOG1241|consen 579 LQSIIRKVGS 588 (859)
T ss_pred HHHHHHHccc
Confidence 7777765443
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=5.5e-10 Score=104.83 Aligned_cols=358 Identities=13% Similarity=0.061 Sum_probs=227.9
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 83 (447)
.|.+..|...-.|+.++..++.-+ -++ .. =.++++.|+.....+....+++.++.+++.+|.+-..-...-....+
T Consensus 98 tL~~~ep~~~s~Aaq~va~IA~~E-lP~-n~--wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~i 173 (859)
T KOG1241|consen 98 TLGSPEPRRPSSAAQCVAAIACIE-LPQ-NQ--WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDI 173 (859)
T ss_pred HcCCCCCCccchHHHHHHHHHHhh-Cch-hh--CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHH
Confidence 355566666666666666666553 111 00 02356666666666653469999999999999843322222223357
Q ss_pred hHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 84 VPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 84 i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
+..++.-++. ++..+|-.++.+|.|--......-..=.+.+.+-..+--..+++|.+++..|..||..+..-......
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778877665 68899999999999865322211111112233332222233788999999999999988754322222
Q ss_pred hhH-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH---------------HHHHHHH---hCcHHHHHHhcCC---
Q 013228 162 DQV-RPALPALAQLVHSNDKEVMTDACRALFYLSEGTND---------------EIQAVIE---AGVCPRLVELLGH--- 219 (447)
Q Consensus 162 ~~~-~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~---------------~~~~~~~---~~~~~~L~~lL~~--- 219 (447)
..+ ...++.-+..+++++++|...++..-++++...-+ ....+.. .+++|.|+++|..
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 222 34556666677899999999999988888853221 0011111 2567888888843
Q ss_pred ----CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 013228 220 ----PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295 (447)
Q Consensus 220 ----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 295 (447)
+++..-..|..||.-++....+ .++. .+++.+-+-++++ +..-|..|+.+++.+..+.....-.-+..+.+
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qal 408 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGD---DIVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQAL 408 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcc---cchh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhh
Confidence 3467778887787776643332 1222 5667777778888 99999999999999988654444444455699
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK 371 (447)
Q Consensus 296 ~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 371 (447)
|.++.++.++...++..+.|+++.++..............+.+..+..-|. ..|.+...++|++.+|.+...+..
T Consensus 409 p~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 409 PSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred HHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhc
Confidence 999999998888999999999999987532111111112233444444443 456788899999999997655443
No 47
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.6e-09 Score=91.91 Aligned_cols=188 Identities=20% Similarity=0.181 Sum_probs=157.8
Q ss_pred CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHH
Q 013228 178 NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLG 257 (447)
Q Consensus 178 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~ 257 (447)
.+.+-+..++.-|..++..-+ ....++..|++..++..+.+.+..+|..|+++|+..+..+|.....+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 356667777777777775443 3456888899999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 013228 258 LLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN--AEFDIKNWAARAISNATFGGTHEQIKYLVRE 335 (447)
Q Consensus 258 ~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 335 (447)
++.++.+..+|..|.++++.+.+..+.....+...++...|.+.+++ .+..++..++..+..++... +.....+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHHh
Confidence 99987678889999999999999888888889998889999999998 57788899999999998753 3334455566
Q ss_pred CChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 336 GCIKPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 336 ~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
+....+..+....+.++...++.++..++..-
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 77777888888888888888888877776543
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=5.5e-08 Score=92.05 Aligned_cols=327 Identities=14% Similarity=0.147 Sum_probs=239.2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCh--
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSA-- 114 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~-- 114 (447)
.-++.|+.-+.+..-.+-|+.|++.|..++. ++|..+... ++++|+..|+. .++++...++.++.++....+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 3688888888776557889999999999987 677766655 58999999876 589999999999999985442
Q ss_pred ------h--------HHHH-HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh---HhhhHHHHHHhhc
Q 013228 115 ------R--------CRDL-VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ---VRPALPALAQLVH 176 (447)
Q Consensus 115 ------~--------~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~l~~l~~ll~ 176 (447)
. +.+. +...+.+..++..+ ...|-.++.++...+.++.+..|...... ...++..++.+|+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 1 1122 33456788888888 77788999999999999988764333222 2678999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC----CchhHhHHHHHHHHhhcCChhhHHHHHhcCCh
Q 013228 177 SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP----SPSVLTRALQTVVNIAAGDDFQTQCIINCGAL 252 (447)
Q Consensus 177 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l 252 (447)
+..+.+|-.++..|..++..++...+.+.=.+++..|..++... ..-|...|+..+.|+...+......+.+.+.+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999987776655555568999999999652 23577889999999999998888889999999
Q ss_pred HHHHHhhccCC--ch--------hH--HHHHHHHHHHHhc-CC-H----HHHHHHHHcCChHHHHHHHhcC--chhHHHH
Q 013228 253 PYLLGLLIHNH--KK--------SI--KTDACWTISNITA-GN-S----EHIQAVIDAGLIGPLVNLLQNA--EFDIKNW 312 (447)
Q Consensus 253 ~~l~~~l~~~~--~~--------~v--~~~a~~~l~nl~~-~~-~----~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~ 312 (447)
+.|.++|.... +. ++ ...+..++..+.. ++ + .+.+.+...+++..|+.++.++ ..+++..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 99998875321 21 11 1345555555554 21 1 2224556788999999998876 4688889
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcC------ChH----HHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhh
Q 013228 313 AARAISNATFGGTHEQIKYLVREG------CIK----PLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEK 371 (447)
Q Consensus 313 a~~aL~~l~~~~~~~~~~~l~~~~------~l~----~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~ 371 (447)
+..++.++.+.. ......|.+.. ..+ .++.+..+ ....+|.+++.++..++......+
T Consensus 337 siitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 337 SIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred HHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence 999999988763 34444444321 112 23334444 345889999999999887665543
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.25 E-value=2e-09 Score=94.69 Aligned_cols=309 Identities=14% Similarity=0.087 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhh-------ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVI-------PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
++.....+..+..+++.+ ..+..++ ..-.-+..+.+|..++ .-+...+.+++..++..........-..=
T Consensus 80 dd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la~~g~~~~~~~e~~~ 156 (442)
T KOG2759|consen 80 DDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLACFGNCKMELSELDV 156 (442)
T ss_pred HHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 556666666666666653 2221111 1233567788888888 78888899999998873332211100000
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHh-ccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 83 AVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQL-NKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 83 ~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
....|...+.+ .++.....++++|..+...++ +|..+...+++..++..+ .+..+-.++.+.+.+++.|+.+++...
T Consensus 157 ~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae 235 (442)
T KOG2759|consen 157 YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAE 235 (442)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHH
Confidence 12334445554 677888899999999987765 788888888888888888 455577899999999999998875444
Q ss_pred hhhHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCc------HHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHH
Q 013228 161 FDQVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTN------DEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQT 231 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~------~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~ 231 (447)
.....+.++.|...+++. .++|..-++.++.|+....+ .....++..++.+.+-.+... .++++....-..
T Consensus 236 ~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L 315 (442)
T KOG2759|consen 236 KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFL 315 (442)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHH
Confidence 444578899999999865 68888999999999997764 222345555655555444432 444433222111
Q ss_pred HH-------HhhcCCh-----------------------hhHHHHHh--cCChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228 232 VV-------NIAAGDD-----------------------FQTQCIIN--CGALPYLLGLLIHNHKKSIKTDACWTISNIT 279 (447)
Q Consensus 232 l~-------~l~~~~~-----------------------~~~~~~~~--~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~ 279 (447)
-. .++..++ +....+.+ ..++..|+++|.++.++.+-.-||.-++...
T Consensus 316 ~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V 395 (442)
T KOG2759|consen 316 TEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV 395 (442)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH
Confidence 11 1222111 11122222 2468899999998867888999999999999
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 280 AGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
+..|+....+.+.|+=+.++++++++|++||..|+.|+..+..
T Consensus 396 r~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 396 RHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9989999889999999999999999999999999999887754
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.24 E-value=3e-08 Score=87.48 Aligned_cols=322 Identities=15% Similarity=0.153 Sum_probs=218.4
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHH------HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 83 AVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLV------LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 83 ~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~------~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
.+.+++.+++. ..++..+.++..+.-+-..++.....+ .....-.+.+.+| ...+.-+...+.++++.++..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence 45667777765 345666666666665554443222221 1223356777888 566667777799999999887
Q ss_pred CCCCChhhH-hhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHH
Q 013228 156 KPKPIFDQV-RPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQT 231 (447)
Q Consensus 156 ~~~~~~~~~-~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~ 231 (447)
.+....... .-....+...+++ .+..-..-+.+||..+...++.+. .++...++..++..+.+ .+..++...+.|
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~-~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY-AFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh-eeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 644333322 2233445555655 567777788889999988777664 46667777888888733 456788889999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHhc-
Q 013228 232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS------EHIQAVIDAGLIGPLVNLLQN- 304 (447)
Q Consensus 232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~------~~~~~l~~~~~~~~L~~~l~~- 304 (447)
++-|+... ...+.+...+.++.|.+++++....+|-+-.+.++.|++...+ +....++..++.+.+-.+-+.
T Consensus 224 iWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk 302 (442)
T KOG2759|consen 224 IWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK 302 (442)
T ss_pred HHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence 99888744 4556667778999999999877678899999999999998653 344455666666655555443
Q ss_pred -CchhHHHHHHHH-------HHHhcCC--------------C--------CHHHHHHHHHc--CChHHHHhhccCC-CHH
Q 013228 305 -AEFDIKNWAARA-------ISNATFG--------------G--------THEQIKYLVRE--GCIKPLCDLLLCA-DPE 351 (447)
Q Consensus 305 -~~~~v~~~a~~a-------L~~l~~~--------------~--------~~~~~~~l~~~--~~l~~L~~ll~~~-~~~ 351 (447)
+|+++....-.. ...++.. + -.++...|.++ .++..|+.+|+.. ||.
T Consensus 303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~ 382 (442)
T KOG2759|consen 303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI 382 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence 355543322211 1112211 0 12344555544 3588889999875 578
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 352 IVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 352 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
+...|+.=+..+++.-+.. ...+...||-+.+.+|++|++++|+..|..++.++..
T Consensus 383 iL~VAc~DIge~Vr~yP~g-------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRHYPEG-------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eeehhhhhHHHHHHhCchH-------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 8888888899998876553 6889999999999999999999999999999888653
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.2e-09 Score=90.51 Aligned_cols=184 Identities=16% Similarity=0.180 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHH
Q 013228 53 YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQ 132 (447)
Q Consensus 53 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~ 132 (447)
+.+-++.|+.-|..++. +-++...++..|+...++.++.+++..+|..|+|+++..+..+|..++.+++.++++.|+..
T Consensus 96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 37788999999999998 67888899999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHHhcCCCCCCChhhH-hhhHHHHHHhhcc--CChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 013228 133 LNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV-RPALPALAQLVHS--NDKEVMTDACRALFYLSEGTNDEIQAVIEAGV 209 (447)
Q Consensus 133 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 209 (447)
+..+.+..++..|+.+++.+.++.+....... .++...|...+++ .+...+..++..+..+..........+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 98777788899999999999999854444433 5668899999998 56788888999999999665444444445566
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 210 CPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
...+..+....+..+...++.++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 6667777777888888888777766553
No 52
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.5e-07 Score=88.37 Aligned_cols=214 Identities=15% Similarity=0.163 Sum_probs=155.0
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
+.+|++.-+-++..|...+.++.-.- ++.. ...+|.|+.-|.+++ |.|+..|+.+++.++..+|++.-.
T Consensus 150 ~tLL~sskpYvRKkAIl~lykvFLkY-PeAl-----r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~---- 218 (877)
T KOG1059|consen 150 FTLLNSSKPYVRKKAILLLYKVFLKY-PEAL-----RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ---- 218 (877)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhh-hHhH-----hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc----
Confidence 45677888888888888888877552 2111 137899999999999 899999999999999988776443
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHh--cCCCCC
Q 013228 82 GAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF--CAGKPK 158 (447)
Q Consensus 82 ~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l--~~~~~~ 158 (447)
.-|.+.++|.. .+.=+....+..+++|+--.|..... .++++.+++.+..-..+...+..++... +.+. .
T Consensus 219 -LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~-~ 291 (877)
T KOG1059|consen 219 -LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGM-S 291 (877)
T ss_pred -ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC-C
Confidence 33677777754 34444556778888888766654433 5889999994443445555555554433 2221 2
Q ss_pred CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
.......-++..|-.++.++|+.++.-++.+++.+....+...+. .-+.++++|.+.++.+|..|+..+.-++..
T Consensus 292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 344455678888888999999999999999999999666554332 247789999999999999999999888753
No 53
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.16 E-value=1.7e-08 Score=94.83 Aligned_cols=382 Identities=14% Similarity=0.163 Sum_probs=229.0
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDY-PQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
.-+.++.+..+...+....++.+.-+......-.+...+..++..++.++. ..+......++.+-... ..+.. -.
T Consensus 723 ~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~kpy--lp 798 (1172)
T KOG0213|consen 723 LDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVKPY--LP 798 (1172)
T ss_pred hhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--ccccc--hH
Confidence 345666676777777777776655323333333344455556666655542 23333333333332221 00111 11
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH--HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD--LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PK 158 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~ 158 (447)
-++..++..|.++++.+|++++..++.++.--..+.+ .+...|. .|.+.| ....+++.-..+.++..++..- -.
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHHhcccc
Confidence 2456778889999999999999999999743332322 2222222 244555 5667788777777666665432 11
Q ss_pred CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
....-..+++|.|...|++...+++.+++..++.++...++....--=..+-=-|+.+|...+..+|+.|..+++.++..
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 22223478999999999999999999999999999977665322100012233466677778889999999988888753
Q ss_pred C--hhhHHHHHh-----------------------c---CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 013228 239 D--DFQTQCIIN-----------------------C---GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI 290 (447)
Q Consensus 239 ~--~~~~~~~~~-----------------------~---~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~ 290 (447)
- .+....+++ + .++|.|+.=...+ +..|+.-...+++.+.....+.....+
T Consensus 956 IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~FeyigemskdYi 1034 (1172)
T KOG0213|consen 956 IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEMSKDYI 1034 (1172)
T ss_pred cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHH
Confidence 2 222222221 1 2344454444556 677777777777776542222111111
Q ss_pred HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc-------cCCCHHHHHHHHHHHHHH
Q 013228 291 DAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL-------LCADPEIVTVFLKGLEKI 363 (447)
Q Consensus 291 ~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll-------~~~~~~~~~~a~~~l~~l 363 (447)
.-+.|.|-+.|.+.|..-|+.|+.++..++.+.. -.|..+.++.+| -+..|.++....+++..+
T Consensus 1035 -yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1035 -YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred -HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH
Confidence 2267777788888899999999999999988631 123344444444 345667776666665554
Q ss_pred HHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 364 LKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
-. .+-..-.++.+.+-+-|+...|++..-.+++.++..
T Consensus 1106 r~--------------------~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~ 1143 (1172)
T KOG0213|consen 1106 RV--------------------ALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHG 1143 (1172)
T ss_pred HH--------------------HhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhc
Confidence 32 222223346666667788899998888888876643
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.14 E-value=2.4e-09 Score=96.46 Aligned_cols=227 Identities=20% Similarity=0.250 Sum_probs=158.3
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhhcCChhHHHHHHh------cCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 84 VPIFVKLLA--SPSDDIREQAVCALGNVAADSARCRDLVLS------EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 84 i~~L~~ll~--~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
...++.+|+ ++++++.+.++..+..+..+.+...+.+.. .....+++.++ ..+|..+...++..+..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 445555554 368999999999999999888766665554 23678888877 677999999999999999988
Q ss_pred CCCCChhhHhhhHHHHHHhhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-----CC--CCchh
Q 013228 156 KPKPIFDQVRPALPALAQLVHS----NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-----GH--PSPSV 224 (447)
Q Consensus 156 ~~~~~~~~~~~~l~~l~~ll~~----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-----~~--~~~~v 224 (447)
.+........+.++.++.++.+ ++.+++..++.++.++...... ...+.+.++++.+..++ .+ ....+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~-R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY-RQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH-HHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh-HHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 7666655445666777766654 5667788999999999965554 46688899999999999 22 34567
Q ss_pred HhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHh
Q 013228 225 LTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE-HIQAVIDAGLIGPLVNLLQ 303 (447)
Q Consensus 225 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~~L~~~l~ 303 (447)
+..++.++|-++. ++.....+.+.++++.+.++++....+++.+-+..++.|++...++ ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8889999998887 4456677888889999999998776889999999999999985543 6777778777776555554
Q ss_pred c--CchhHHHHH
Q 013228 304 N--AEFDIKNWA 313 (447)
Q Consensus 304 ~--~~~~v~~~a 313 (447)
. +|+++....
T Consensus 294 rk~~Dedl~edl 305 (312)
T PF03224_consen 294 RKWSDEDLTEDL 305 (312)
T ss_dssp S--SSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 3 466665543
No 55
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.11 E-value=8.4e-09 Score=92.92 Aligned_cols=227 Identities=15% Similarity=0.160 Sum_probs=161.8
Q ss_pred HHHHHHHhccc-cchhHHHHHHHHHHHhcCCCCCCChhhHh-------hhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228 126 LIPLLTQLNKH-AKLSMLRIATWTLSNFCAGKPKPIFDQVR-------PALPALAQLVHSNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 126 l~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~ 197 (447)
...++.+|..- ++.++.++.+..+..+....+........ .....+++++..+|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 45556666555 78899999999999999888644444332 24566778889999999999999999999766
Q ss_pred cHHHHHHHHhCcHHHHHHhcCC----CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh------ccCCchhH
Q 013228 198 NDEIQAVIEAGVCPRLVELLGH----PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLL------IHNHKKSI 267 (447)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~lL~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l------~~~~~~~v 267 (447)
+....... .+.++.++..+.+ ++..++..++.++.++.. .+..+..+.+.++++.+..++ .++....+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 55433211 3556667666644 445677889999999986 555778889999999999999 44447788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc
Q 013228 268 KTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN-AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL 346 (447)
Q Consensus 268 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 346 (447)
..+++.+++.++.. ++....+.+.++++.|+++++. ..+++.+-+..++.|+...........++..|+++.+..+..
T Consensus 215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 89999999999664 6778888888899999999994 578999999999999999876557888888887777777665
Q ss_pred C--CCHHHHHH
Q 013228 347 C--ADPEIVTV 355 (447)
Q Consensus 347 ~--~~~~~~~~ 355 (447)
. .|+++.+.
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 4 68887765
No 56
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.4e-07 Score=86.14 Aligned_cols=309 Identities=17% Similarity=0.190 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCCh------hh--------
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRE-DYPQLQFEAAWALKNIVSGTS------ED-------- 74 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~------~~-------- 74 (447)
.+-|+.|++.|..++.. ++..+.. .+++.|++.|+.+ .++++...++.++.++..+.+ +.
T Consensus 37 ~eDRR~A~rgLKa~srk----YR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~ 111 (970)
T KOG0946|consen 37 LEDRRDAVRGLKAFSRK----YREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL 111 (970)
T ss_pred hhhHHHHHHHHHHHHHH----HHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence 56788888888887753 3444444 4688888888654 348999999999999887442 11
Q ss_pred --HHH-HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHhc-CCHHHHHHHhccccchhHHHHHHHHH
Q 013228 75 --TKV-VIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADS-ARCRDLVLSE-EALIPLLTQLNKHAKLSMLRIATWTL 149 (447)
Q Consensus 75 --~~~-~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~a~~~L 149 (447)
.+. +...+.|..++..+...+..+|..++..+.++.... .+.++.+... -++..++.+| .+..+.++-.+...|
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-RDSREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-hhhhhhhchhHHHHH
Confidence 122 334588999999999999999999999999987544 4556665543 5799999999 677777888899999
Q ss_pred HHhcCCCCCCChhhH-hhhHHHHHHhhccC---C-hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC---CC
Q 013228 150 SNFCAGKPKPIFDQV-RPALPALAQLVHSN---D-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH---PS 221 (447)
Q Consensus 150 ~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~---~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~~ 221 (447)
..++++.+..+.... .+++..|+.++... | .-|...|+..+.|+..+...+...+.+.+.+|.|.++|.. .+
T Consensus 191 ~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d 270 (970)
T KOG0946|consen 191 SELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGD 270 (970)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccC
Confidence 999999866655544 88999999999743 3 3578899999999998877777888899999999988843 22
Q ss_pred -----chh-----HhHHHHHHHHhhcCCh------hhHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcCCHH
Q 013228 222 -----PSV-----LTRALQTVVNIAAGDD------FQTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAGNSE 284 (447)
Q Consensus 222 -----~~v-----~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~~~~ 284 (447)
|.. ...++.++..++.-.. ...+.+..++++..|..++.++ -..+++.++.-+++++.+++..
T Consensus 271 ~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~ 350 (970)
T KOG0946|consen 271 GEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNAR 350 (970)
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchH
Confidence 221 2335566666653211 2234566788999999998876 3578999999999999998877
Q ss_pred HHHHHHHcC------ChH----HHHHHHhc-CchhHHHHHHHHHHHhcCCC
Q 013228 285 HIQAVIDAG------LIG----PLVNLLQN-AEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 285 ~~~~l~~~~------~~~----~L~~~l~~-~~~~v~~~a~~aL~~l~~~~ 324 (447)
+...+.+.. -.| .++.+..+ ..+..|..+.+++..+....
T Consensus 351 nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 351 NQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 766666421 122 23333333 36788888888888887754
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.9e-07 Score=86.46 Aligned_cols=275 Identities=12% Similarity=0.145 Sum_probs=192.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
++-+-++.+|++.. +-+|..|+..+..+.-..|+..+ ..++.|..-|+++|+.++.+|+.+++.|++.+|...
T Consensus 144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny- 216 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY- 216 (877)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc-
Confidence 34567788999999 89999999999999876666443 357999999999999999999999999998877531
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCC-hhHHHHHHHHHH--Hhcc
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND-KEVMTDACRALF--YLSE 195 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~v~~~al~~l~--~l~~ 195 (447)
+ ...|.+..+|.++++.=+.-..+..+++|+--.|. ....+++.+..++++.. .++...++.++. +++.
T Consensus 217 -L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 217 -L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 1 23566677776666665666677777777754433 34667888888888664 566777776653 3443
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228 196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275 (447)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l 275 (447)
+.++....+. -.++.|-.++.+.++..+.-++.+++.+...++..... --+.++++|.+. +..+|..|.-.+
T Consensus 289 g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLL 360 (877)
T ss_pred CCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHH
Confidence 3222222111 24788888899999999999999999999888755443 345789999998 999999999988
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 013228 276 SNITAGNSEHIQAVIDAGLIGPLVNLLQN-AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345 (447)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 345 (447)
.-+... +++.. ++..|+..+.. +....|.+.+.-+..+|...+..+..-|-. .+..|+++.
T Consensus 361 ~gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW--YlsVlveLa 422 (877)
T KOG1059|consen 361 YGMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW--YLSVLVELA 422 (877)
T ss_pred HHHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHH
Confidence 877553 44444 34445555543 344777777777777776554444433332 344455544
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=8.3e-08 Score=91.17 Aligned_cols=188 Identities=18% Similarity=0.241 Sum_probs=117.0
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHH
Q 013228 166 PALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQC 245 (447)
Q Consensus 166 ~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 245 (447)
-++..|-++|.+.|..++.-++..|......++...+.. =..++.+|++++..+++.|+..+..+...+. ...
T Consensus 313 lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~~N--v~~ 385 (866)
T KOG1062|consen 313 LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNESN--VRV 385 (866)
T ss_pred HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HHH
Confidence 345567777777788888888888887776665543322 2567889999999999999999888886443 222
Q ss_pred HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHH-------------HHcCChHHHHHHHhcC------
Q 013228 246 IINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAV-------------IDAGLIGPLVNLLQNA------ 305 (447)
Q Consensus 246 ~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l-------------~~~~~~~~L~~~l~~~------ 305 (447)
.+..++.+|.+. +++.+...+.-+..++. ..|+.+..+ +...++..++.++.+.
T Consensus 386 -----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~ 459 (866)
T KOG1062|consen 386 -----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE 459 (866)
T ss_pred -----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh
Confidence 345688888887 88888887777777665 233322221 1233455566655543
Q ss_pred -------------------chhHHHHHHHHHHHhc---CCC-CHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHH
Q 013228 306 -------------------EFDIKNWAARAISNAT---FGG-THEQIKYLVREGCIKPLCDLLLC--ADPEIVTVFLKGL 360 (447)
Q Consensus 306 -------------------~~~v~~~a~~aL~~l~---~~~-~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l 360 (447)
.+.+.+.|.|+|+.-. .++ ..+......+..++..|...+.+ .+..++.+++.++
T Consensus 460 y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al 539 (866)
T KOG1062|consen 460 YAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTAL 539 (866)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 2334555666665432 111 11111122234567777777755 4567888888888
Q ss_pred HHHHHh
Q 013228 361 EKILKV 366 (447)
Q Consensus 361 ~~l~~~ 366 (447)
.+|...
T Consensus 540 ~KLSsr 545 (866)
T KOG1062|consen 540 LKLSSR 545 (866)
T ss_pred HHHHhh
Confidence 888653
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.2e-07 Score=87.28 Aligned_cols=361 Identities=14% Similarity=0.118 Sum_probs=195.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228 5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV 84 (447)
Q Consensus 5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 84 (447)
|++++.-++--|+.+|.++++.+ ++ ..+.|.+.+++++++ +-+|..|+.|...+....|+....+ +
T Consensus 116 L~s~nq~vVglAL~alg~i~s~E-------ma-rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f-----~ 181 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPE-------MA-RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF-----V 181 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHH-------Hh-HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-----h
Confidence 44555555555555555554431 11 124555566666666 6666666666666665555544333 3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------------ccchhHHHHHHHHHH
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------------HAKLSMLRIATWTLS 150 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------------~~~~~~~~~a~~~L~ 150 (447)
+...++|.+.+..+...++..+..+|..++..-..+.+ .++.++..|++ -+|+-++...+..|.
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr 259 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR 259 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH
Confidence 44555555555555555566666666544432222221 34444444421 124445555666666
Q ss_pred HhcCCCCCCChhhHhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhH
Q 013228 151 NFCAGKPKPIFDQVRPALPALAQLVHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227 (447)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~ 227 (447)
-+-++.+ .....+..++..+..-..++ -..+...+..++..+-..+.-+. -++..|-++|.+++..+|.-
T Consensus 260 iLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------lainiLgkFL~n~d~NirYv 332 (866)
T KOG1062|consen 260 ILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------LAINILGKFLLNRDNNIRYV 332 (866)
T ss_pred HhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------HHHHHHHHHhcCCccceeee
Confidence 5555542 11222222222222211111 13455556666655544333221 13566777788888888888
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCch
Q 013228 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEF 307 (447)
Q Consensus 228 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~ 307 (447)
|+..|......++...+. -=..++++|+++ |..+|+.|...+-.+... .++.. ++..|+.+|.+.++
T Consensus 333 aLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 333 ALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESSDE 399 (866)
T ss_pred ehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhccH
Confidence 888888877766643321 223588899999 999999999888777553 33333 45668999998899
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh-hhhhhhhhhcccccHHHHH
Q 013228 308 DIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG-EAEKNMDIAIGDVNQYAQL 386 (447)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~ 386 (447)
+.+...+.-+..++..-.|+.+ + .++.+...+.....-+...+...+..++..+ ..... +....+...
T Consensus 400 ~~k~~~as~I~~laEkfaP~k~-W-----~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~-----y~~~rLy~a 468 (866)
T KOG1062|consen 400 DFKADIASKIAELAEKFAPDKR-W-----HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE-----YAVLRLYLA 468 (866)
T ss_pred HHHHHHHHHHHHHHHhcCCcch-h-----HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh-----HHHHHHHHH
Confidence 9999998888888875544332 2 2555666666554444444444455555443 11110 001111111
Q ss_pred HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228 387 VEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419 (447)
Q Consensus 387 i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (447)
+.+. .++.-+.+.+...|.|+|..|=
T Consensus 469 ~~~~-------~~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 469 LSED-------TLLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred Hhhh-------hhhhhhhhhHHHHHHHHhhhhh
Confidence 1111 1233344566788899998875
No 60
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.5e-08 Score=92.30 Aligned_cols=315 Identities=17% Similarity=0.135 Sum_probs=204.2
Q ss_pred ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228 37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC 116 (447)
Q Consensus 37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~ 116 (447)
-++++++.+.++..++ ..++.-|++.+.|++.. .+......-..+...+.++..+.+..++ .++..+-.+..
T Consensus 82 ~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLik----- 153 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIK----- 153 (675)
T ss_pred HHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHH-----
Confidence 3568899999999999 79999999999999872 2222222233456677777776666666 34444544432
Q ss_pred HHHHHhcC---CHHHHHHHhc---cccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHH
Q 013228 117 RDLVLSEE---ALIPLLTQLN---KHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRAL 190 (447)
Q Consensus 117 ~~~~~~~~---~l~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l 190 (447)
+.+.+.. -++.++.+|+ ...++..+...+.-+..+-..++.........+++.|+.+|.++.++++..+=.++
T Consensus 154 -dIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l 232 (675)
T KOG0212|consen 154 -DIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLL 232 (675)
T ss_pred -HhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2222211 2444454443 44577788887777776665544444445588999999999999999986665555
Q ss_pred HHhcc---CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCch-h
Q 013228 191 FYLSE---GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKK-S 266 (447)
Q Consensus 191 ~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~ 266 (447)
++... .++.. +--...++.++..+.++++.++..|+..+..+..-.+.. -...-+|++..++.++.+. +. .
T Consensus 233 ~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~-e~~~ 307 (675)
T KOG0212|consen 233 SEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDT-EEMS 307 (675)
T ss_pred HHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCC-cccc
Confidence 54431 12111 112356788899999999999999988888887655433 2234457778888888776 44 3
Q ss_pred HHHHHHHH---HHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 013228 267 IKTDACWT---ISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLC 342 (447)
Q Consensus 267 v~~~a~~~---l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 342 (447)
++..+... +..++. .+...+. ++ ..+++.+...+.++..+.|..+..-+..+-... +.+.-. -.......|.
T Consensus 308 i~~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~-p~ql~~-h~~~if~tLL 383 (675)
T KOG0212|consen 308 IKEYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA-PGQLLV-HNDSIFLTLL 383 (675)
T ss_pred HHHHHHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC-cchhhh-hccHHHHHHH
Confidence 44444322 222222 1111112 33 236778888888888999988888887776653 222221 2345678888
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 343 DLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 343 ~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
.-|.+.+.+++..++..+.+++.....
T Consensus 384 ~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 384 KTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 899999999999999999999876443
No 61
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.6e-06 Score=79.38 Aligned_cols=343 Identities=15% Similarity=0.093 Sum_probs=226.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 119 (447)
++..+..-+..+. +.+|.....++..+........ ...+.+.+.+++....-.-+..+.+.++.+..+.. -..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 5667777778888 8999988888877765222111 11245677788888888888899999999887653 345
Q ss_pred HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH
Q 013228 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTND 199 (447)
Q Consensus 120 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~ 199 (447)
+.+.+++..+...+....+..-++.+..+....+..-........-..+|.++.-+.+....++..+..+...+...-+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 55667788888877433333333334444444444332333334456677777777788889998887777665543322
Q ss_pred H-HHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228 200 E-IQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI 278 (447)
Q Consensus 200 ~-~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl 278 (447)
. .+ -+++.++.-+....|..+..++..++.++...+.+.. ..-..++|.+.+.|.+. .+++|+.+..++..+
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 2 11 2344444444445889999999999999988876655 44458999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCChHHHHhhccCCCHHHHH
Q 013228 279 TA--GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG--GTHEQIKYLVREGCIKPLCDLLLCADPEIVT 354 (447)
Q Consensus 279 ~~--~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~ 354 (447)
+. .+++ ++. ++|.|++.+..+...+ ..+...|+.=... -++..... .++.|.+-+...+..+..
T Consensus 323 ~svidN~d-I~~-----~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 323 GSVIDNPD-IQK-----IIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR 390 (569)
T ss_pred HHhhccHH-HHH-----HHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence 87 3434 221 6888888888655333 3344444322221 12222222 356666677777888889
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 355 VFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 355 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
.+..++.|++..-++.+. ....+. ..++.|........|+++..+.+++.....
T Consensus 391 ~t~~IidNm~~LveDp~~----------lapfl~--~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVEDPKD----------LAPFLP--SLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hHHHHHHHHHHhhcCHHH----------HhhhHH--HHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 999999999987654332 122222 235777777777899999999999966554
No 62
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.92 E-value=9e-07 Score=81.18 Aligned_cols=351 Identities=17% Similarity=0.142 Sum_probs=214.9
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF 87 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 87 (447)
.+..+|+.|+.+|..-+-.-......+--..-++...++.-+.++ .+++..|..||..+..-..++...+.+.-.....
T Consensus 190 t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 190 TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888877322110000000011124455566667778 8999999999999988677777777776666667
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH----------------HhcCCHHHHHHHhcc------ccchhHHHHH
Q 013228 88 VKLLASPSDDIREQAVCALGNVAADSARCRDLV----------------LSEEALIPLLTQLNK------HAKLSMLRIA 145 (447)
Q Consensus 88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~----------------~~~~~l~~l~~~l~~------~~~~~~~~~a 145 (447)
.+.+.++++++..+++...+.+|...-...-.. ...+++|.++.+|.+ +.+..+-..|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 778899999999999999999985332111110 112468888888854 2245566666
Q ss_pred HHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhH
Q 013228 146 TWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVL 225 (447)
Q Consensus 146 ~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~ 225 (447)
..||.-++... .......++..+-+-+++++..-++.+..+++.+...+......-+-...+|.+...+.++.--++
T Consensus 349 ~sCLqlfaq~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk 425 (858)
T COG5215 349 SSCLQLFAQLK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK 425 (858)
T ss_pred HHHHHHHHHHh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence 66666665432 112334466666677788899999999999999997776543333334678888888888888899
Q ss_pred hHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-hhc--cCCchhHHHHHHHHHHHHhcCCHHHHH---HHHHcCChHHHH
Q 013228 226 TRALQTVVNIAAGDDFQTQCIINCGALPYLLG-LLI--HNHKKSIKTDACWTISNITAGNSEHIQ---AVIDAGLIGPLV 299 (447)
Q Consensus 226 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~-~l~--~~~~~~v~~~a~~~l~nl~~~~~~~~~---~l~~~~~~~~L~ 299 (447)
..++||++.++.+-+.. +-..+-++..+. .+. .. .+.+....+|...|++.+-++... .++ ..+.+.++
T Consensus 426 ~ttAwc~g~iad~va~~---i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~ 500 (858)
T COG5215 426 STTAWCFGAIADHVAMI---ISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAIL 500 (858)
T ss_pred hHHHHHHHHHHHHHHHh---cCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHH
Confidence 99999999998654422 222232222221 111 12 467888999999999875333221 111 12333333
Q ss_pred HHH----h--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHH---------cCChHHHHhhccCCC----HHHHHHHHHHH
Q 013228 300 NLL----Q--NAEFDIKNWAARAISNATFGGTHEQIKYLVR---------EGCIKPLCDLLLCAD----PEIVTVFLKGL 360 (447)
Q Consensus 300 ~~l----~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~---------~~~l~~L~~ll~~~~----~~~~~~a~~~l 360 (447)
.-| + ..+...|..+..+|+.+...+.......+.. ...+..+-+.+..+| .+++...++.|
T Consensus 501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl 580 (858)
T COG5215 501 NALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVL 580 (858)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 322 2 2467788888999998887654333332221 011222233333333 25556666666
Q ss_pred HHHHHhh
Q 013228 361 EKILKVG 367 (447)
Q Consensus 361 ~~l~~~~ 367 (447)
..+++..
T Consensus 581 ~aiir~~ 587 (858)
T COG5215 581 EAIIRTR 587 (858)
T ss_pred HHHHHhc
Confidence 6666543
No 63
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.2e-06 Score=80.47 Aligned_cols=343 Identities=14% Similarity=0.100 Sum_probs=210.8
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF 87 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 87 (447)
+++..-+.|..+|.-.+...+ +.+.+. ++..+-+-+.+++ ..-++.|+.+++.+..+..+....-+-..++|.+
T Consensus 340 DdWn~smaA~sCLqlfaq~~g----d~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i 413 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKG----DKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGI 413 (858)
T ss_pred cccchhhhHHHHHHHHHHHhh----hHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHH
Confidence 445566666666665554321 111111 3333334566777 5788999999999988655555444445678888
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--ccchhHHHHHHHHHHHhcCCCCCCC---hh
Q 013228 88 VKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--HAKLSMLRIATWTLSNFCAGKPKPI---FD 162 (447)
Q Consensus 88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~~~~~~~a~~~L~~l~~~~~~~~---~~ 162 (447)
...+.++.--++..++|+++.++.+- ...+...+-++..++.+.. ...+....+++|...++..+-+... ..
T Consensus 414 ~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S 490 (858)
T COG5215 414 ENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVES 490 (858)
T ss_pred HHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccc
Confidence 88888888889999999999998653 3444444545544443321 2345677889999999987652222 22
Q ss_pred hHh----hhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-----------cCCCC----
Q 013228 163 QVR----PALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL-----------LGHPS---- 221 (447)
Q Consensus 163 ~~~----~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-----------L~~~~---- 221 (447)
... .++..|++... .++...|..+..+|+.+....++....+. .|+.....+. +...+
T Consensus 491 ~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~ 569 (858)
T COG5215 491 FLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLV 569 (858)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 223 33333443322 34567788888888888765554332221 1232222222 22211
Q ss_pred chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Q 013228 222 PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNL 301 (447)
Q Consensus 222 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~ 301 (447)
.+++..-+..|..+.+..+...+. .+..++..++++|.+.+...+-.....++++++..-.+....... .++|.|.+.
T Consensus 570 ~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~-~fiPyl~~a 647 (858)
T COG5215 570 EELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYAS-KFIPYLTRA 647 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHH
Confidence 345666666666666544332221 122467788888988745566678888999997754454444444 499999999
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC--HHHHHHHHHHHHHHH
Q 013228 302 LQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD--PEIVTVFLKGLEKIL 364 (447)
Q Consensus 302 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~a~~~l~~l~ 364 (447)
++..+..+...|...++.++..-+.+...+ .......|++++.++. .++.-..+.++..+.
T Consensus 648 ln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 648 LNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 988899999999999999987544433332 2346788999998753 355555555555554
No 64
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=7.3e-07 Score=84.91 Aligned_cols=336 Identities=16% Similarity=0.158 Sum_probs=216.8
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++.+...|-+.+.-.--++.+.+... +. ...++++.+++=..+++ +.+|..|++.++.+-. +....
T Consensus 55 vk~~~T~dlelKKlvyLYl~nYa~~~--P~----~a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e----- 120 (734)
T KOG1061|consen 55 VKCMQTRDLELKKLVYLYLMNYAKGK--PD----LAILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE----- 120 (734)
T ss_pred HhhcccCCchHHHHHHHHHHHhhccC--ch----HHHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH-----
Confidence 45566667777777777777777653 11 11246777777777788 8999998888877655 22222
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PI 160 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~ 160 (447)
.+..++.+.+++.++.+|..++.+..++-..++ +.+...|.+..|-.++ .++++.+..+|+.+|..+....+. ..
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 246789999999999999999999999976654 4566778888888888 688899999999999999987653 22
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
.......+..++..+..-++=-+...+.++.+-...++.... .++..+...|.+.+..+...+...+..+....+
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 233344555555555544444455555555555544432222 456788888888888888888888888776555
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHH-------------------------HHH-cC-
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQA-------------------------VID-AG- 293 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~-------------------------l~~-~~- 293 (447)
.....+. ...-+.++.++.+. . +++.-+..-+.-+....++.... +.. .+
T Consensus 272 ~~~~~~~-~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl 348 (734)
T KOG1061|consen 272 QVNELLF-KKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANL 348 (734)
T ss_pred HHHHHHH-HHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHH
Confidence 4323222 24556666666655 3 44444333332222222221110 000 11
Q ss_pred --ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 013228 294 --LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAE 370 (447)
Q Consensus 294 --~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~ 370 (447)
++..+...-..-|.+..+++.+++++++...... .+.+..|.++++-....++..++..+..+++..++.
T Consensus 349 ~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 349 AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 2333333333457888999999999998854221 567888888888776666667777788888766554
No 65
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2.8e-07 Score=87.66 Aligned_cols=293 Identities=16% Similarity=0.136 Sum_probs=183.3
Q ss_pred ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228 5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV 84 (447)
Q Consensus 5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 84 (447)
..++++.++..|.+.+..+--. .+. ..+...+.+.+++.+ +-+|..++-+..++-..+ .+.....|.+
T Consensus 95 ~~d~np~iR~lAlrtm~~l~v~-------~i~-ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~ 162 (734)
T KOG1061|consen 95 CEDPNPLIRALALRTMGCLRVD-------KIT-EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLV 162 (734)
T ss_pred CCCCCHHHHHHHhhceeeEeeh-------HHH-HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchh
Confidence 3456666666666555433221 111 225678888899999 899999999999887643 4567788999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV 164 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (447)
+.|..++.+.++.+..+|+.+|..+....+... .......++..+...-+.-....-+.++-.++.+.|... ...
T Consensus 163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~----~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea 237 (734)
T KOG1061|consen 163 DALKDLLSDSNPMVVANALAALSEIHESHPSVN----LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REA 237 (734)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC----cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhH
Confidence 999999999999999999999999986654311 111233333333233333334445556667777665555 445
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 244 (447)
..++..+...+.+.++.+...+...+.+........ ....-...-+.++.++.... .++.-+++-+.-+....+....
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~ 315 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILK 315 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHH
Confidence 677888888899999988888888888877544332 22333345666777776665 6666665555544433322111
Q ss_pred HHH-------------hcCChHHHHHh----------------hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 013228 245 CII-------------NCGALPYLLGL----------------LIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295 (447)
Q Consensus 245 ~~~-------------~~~~l~~l~~~----------------l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 295 (447)
.-+ +..-++.+..+ -..- +.+..+.+++++++++..-++. .+.+
T Consensus 316 ~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~------~~cv 388 (734)
T KOG1061|consen 316 VEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS------NDCV 388 (734)
T ss_pred hHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh------hhhH
Confidence 000 00111222221 1222 6677788999999998743331 5577
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 296 GPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 296 ~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
..|+++++..-..+.+++...+..+...
T Consensus 389 ~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 389 SILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred HHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 7788888766556666677777777664
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.5e-05 Score=78.40 Aligned_cols=330 Identities=15% Similarity=0.183 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhh----hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEV----IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI 86 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~----~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 86 (447)
.-...++.+|.++.+.+ ++....+ .--|.++.+..++.....+.++..|+.++.-+.. +.++...+...|.+..
T Consensus 1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 45667888999999874 3222221 2236788888888766558999999999988887 8899999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---CCCChhh
Q 013228 87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---PKPIFDQ 163 (447)
Q Consensus 87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~ 163 (447)
|+.+|.+ -|..|+.++.+|..|++... ....-.+.|++..+..++-.......+..++..+..+..+. |......
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9999976 57889999999999997766 44455577888899888877777888999999999998776 4433333
Q ss_pred HhhhHH-----------HHHHhhcc--CChhH------HHHHHHHHHHhcc--------CC------cHHH---------
Q 013228 164 VRPALP-----------ALAQLVHS--NDKEV------MTDACRALFYLSE--------GT------NDEI--------- 201 (447)
Q Consensus 164 ~~~~l~-----------~l~~ll~~--~~~~v------~~~al~~l~~l~~--------~~------~~~~--------- 201 (447)
+...-. ..++++.. .++++ +...-..+..+.. ++ +++.
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 322222 33334332 12221 2222222222221 00 0000
Q ss_pred --------HHHH-------------HhCcHHHHHHhcCCCCch--hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh
Q 013228 202 --------QAVI-------------EAGVCPRLVELLGHPSPS--VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL 258 (447)
Q Consensus 202 --------~~~~-------------~~~~~~~L~~lL~~~~~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~ 258 (447)
+.++ -.++++.++.++..+.+. ....-..++..+.+..+...+.+-..|.+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 0011 113455556666544332 22223334445566677777777778999999999
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh
Q 013228 259 LIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCI 338 (447)
Q Consensus 259 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l 338 (447)
+... +..+-..+..+|..++.. .-....+.....+..++..+.. .+...--|+.+|..+......+.....+..|.+
T Consensus 2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 9876 666668888899988664 3555566665566667776663 345556899999999886656666777788999
Q ss_pred HHHHhhccC
Q 013228 339 KPLCDLLLC 347 (447)
Q Consensus 339 ~~L~~ll~~ 347 (447)
+.|..+|++
T Consensus 2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred HHHHHHhcc
Confidence 999999976
No 67
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=9e-07 Score=86.65 Aligned_cols=377 Identities=14% Similarity=0.104 Sum_probs=243.7
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 83 (447)
+.+++++.++..++.-+.+++... .......++++.+.++..... ..|++.|...+.++..-..... =....+
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~~~ 317 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVKSL 317 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhhhh
Confidence 345667888888888888887653 225667789999999999888 7999999998888765221111 122245
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcC--------------------Chh-HHH-------------------HHHhc
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAAD--------------------SAR-CRD-------------------LVLSE 123 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~--------------------~~~-~~~-------------------~~~~~ 123 (447)
.+.++...++++..++.........++.. ... .+. .+...
T Consensus 318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~ 397 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS 397 (759)
T ss_pred hHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchh
Confidence 67777777777777776666555554421 000 000 00011
Q ss_pred CCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHH
Q 013228 124 EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQA 203 (447)
Q Consensus 124 ~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~ 203 (447)
..++.+-.+. .+.+..++...+..+..+.--.+ .........|.....+++.++.|+.+..+.+..+-...+..-..
T Consensus 398 ~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~ 474 (759)
T KOG0211|consen 398 SILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIS 474 (759)
T ss_pred hhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccch
Confidence 1112222222 34444444444444444332221 22234667788888899999999999887776555433332233
Q ss_pred HHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228 204 VIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS 283 (447)
Q Consensus 204 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~ 283 (447)
......++.+..+-.+..++++....+.+..++.... ..+.+...-+.+...+.+. ...++..|+..+..++....
T Consensus 475 ~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G 550 (759)
T KOG0211|consen 475 TVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFG 550 (759)
T ss_pred hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhC
Confidence 4556678888888888889999999999988875333 2344444555566666666 77899999888888876321
Q ss_pred HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 013228 284 EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKI 363 (447)
Q Consensus 284 ~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l 363 (447)
. .......++.++.+...++...|...+.++..++.....+. .....++.+..+..+..++++..+++.|..+
T Consensus 551 ~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 551 S---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred c---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 1 22233467778877777778899988888887776443333 2334689999999999999999999999999
Q ss_pred HHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013228 364 LKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET 417 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 417 (447)
...-... ..+....+.++.|..+++.+++.+|..+...
T Consensus 624 ~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 624 LKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFGS 661 (759)
T ss_pred HhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 8764332 2234445777777778888887777665544
No 68
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.86 E-value=1.2e-06 Score=80.97 Aligned_cols=338 Identities=13% Similarity=0.125 Sum_probs=212.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSED--TKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR 117 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~ 117 (447)
++...+++|+++. +.+|.+|+...+.++.--..+ ...+...| ..|.+.+...++++.-..+.++..+..... ++
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 5566778889999 899999999888876521111 12233333 345666777889988887777777753221 11
Q ss_pred HH-HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH-hhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 118 DL-VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV-RPALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 118 ~~-~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
.. -.-.+++|.+...| .+....+..+....+..+|...|....... -.+-=.|+.+|.+.+.+++..|...++.++.
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 00 01246788888888 677788999999999999988755333222 2233347778888999999999999998885
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228 196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275 (447)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l 275 (447)
.-..+ .++..|+.-|+..+-..|....-+++-.+..+. -..++|.|+.=...+ +..++.-...++
T Consensus 760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 43322 345566666655444444333333433332221 123566666666677 778888877777
Q ss_pred HHHhcCCHH-HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHH-HHHHHHcCChHHHHhhccCCCHHHH
Q 013228 276 SNITAGNSE-HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQ-IKYLVREGCIKPLCDLLLCADPEIV 353 (447)
Q Consensus 276 ~nl~~~~~~-~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~~~ 353 (447)
+.+.....+ ...++ ..+.|.|-+.+.+.|+.-|+.|...+..++.++..-. ...++. .+..|..-+-++.|.++
T Consensus 825 ~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi 900 (975)
T COG5181 825 CFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI 900 (975)
T ss_pred HHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence 776552212 22222 2367778888888899999999999999988642110 111111 23333333345667777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 354 TVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 354 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
....+++..+... +-.--.+..+.+-+-|++..|+++.-...+.++-.
T Consensus 901 ~~~~Eg~e~~~~~--------------------lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~ 948 (975)
T COG5181 901 QSFDEGMESFATV--------------------LGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVF 948 (975)
T ss_pred HHHHHHHHHHHHH--------------------hccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence 7766666555432 22122246677778899999999888888876543
No 69
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=3e-08 Score=89.89 Aligned_cols=308 Identities=13% Similarity=0.063 Sum_probs=195.2
Q ss_pred HHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhccCC
Q 013228 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSND 179 (447)
Q Consensus 101 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~ 179 (447)
+++.+|..+++.-...|.-+....+.+.|++.| +.++..+.--+...+.|+.... +-.......+++..++.++.+.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 344455555555555566777888899999999 5566555666777777776555 33334445889999999999999
Q ss_pred hhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh---hHHHHHhc----CC
Q 013228 180 KEVMTDACRALFYLSEGTNDEIQ-AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF---QTQCIINC----GA 251 (447)
Q Consensus 180 ~~v~~~al~~l~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~----~~ 251 (447)
..++....|.++++..+.++..+ .++..-++..++.+..++...++..++..+.|+.+.... ..+.+++. -.
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 99999999999999976654322 355667789999999999999999999999999874332 22222221 13
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcC-----------chhHHHHHHHHHHH
Q 013228 252 LPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNA-----------EFDIKNWAARAISN 319 (447)
Q Consensus 252 l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~-----------~~~v~~~a~~aL~~ 319 (447)
.+.+++.+... ++-.-.+.++.+.+++..+.+..+.+.+ ..++..+.+++... ..++-..-.....+
T Consensus 567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 45677777777 7767777799999988865443333332 34555555554321 11111111222223
Q ss_pred hcCCCCHHHHHHHHHcCChHHHHhhcc---CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHH
Q 013228 320 ATFGGTHEQIKYLVREGCIKPLCDLLL---CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKI 396 (447)
Q Consensus 320 l~~~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 396 (447)
+..+.+.-.+..... +.+-.+=+ .++.++..+..|.+.++.+.....+.. ...-.-++.+.+.|.-+.+
T Consensus 646 l~e~~d~f~r~~~~~----p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~e~l 717 (743)
T COG5369 646 LSENSDKFKRLVLTT----PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIREWL 717 (743)
T ss_pred ccccccccccceecC----CCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHHHHH
Confidence 332211100000000 11111111 133467778888888865543222210 0111236788889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHh
Q 013228 397 ENLRSHDNDEIHEKSVKILETY 418 (447)
Q Consensus 397 ~~l~~~~~~~v~~~a~~~l~~~ 418 (447)
+.+++++++.|++++..+|..+
T Consensus 718 ~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 718 VKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHhccCcHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 70
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=4.2e-07 Score=88.80 Aligned_cols=234 Identities=15% Similarity=0.167 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh
Q 013228 12 MQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL 91 (447)
Q Consensus 12 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 91 (447)
-++.|+..|.+++... +.....-..-|+.|.++++|+++. .+++..-+.+-..+..-++.++..+++.++-..+++.|
T Consensus 486 HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 4677888888888764 677777788899999999999999 89999999999998887899999999999999999988
Q ss_pred CC-C--CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh-hHhhh
Q 013228 92 AS-P--SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD-QVRPA 167 (447)
Q Consensus 92 ~~-~--~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~ 167 (447)
.. + +++-|..|+.+|+.++.+-+..++...+.+.+..-+.+|..++.+-++.-++-+|..|-.+.+..+.. ...+.
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 76 2 56899999999999998877778888888888888888844445667777999999999887444443 44778
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccC----CcHHHHHH------------HHhCcH---HHHHHhcCCCCchhHhHH
Q 013228 168 LPALAQLVHSNDKEVMTDACRALFYLSEG----TNDEIQAV------------IEAGVC---PRLVELLGHPSPSVLTRA 228 (447)
Q Consensus 168 l~~l~~ll~~~~~~v~~~al~~l~~l~~~----~~~~~~~~------------~~~~~~---~~L~~lL~~~~~~v~~~a 228 (447)
...|..+|.++-++|+..|+.+|+.+..+ .+++...+ .+.-+. -.++.++++.++-++...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 89999999999999999999999988865 23222221 111112 256667788889999999
Q ss_pred HHHHHHhhcCChhhHHHHH
Q 013228 229 LQTVVNIAAGDDFQTQCII 247 (447)
Q Consensus 229 ~~~l~~l~~~~~~~~~~~~ 247 (447)
.-+++.++.++......+.
T Consensus 724 ~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 724 VVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHHHHHhhHHHhHHHh
Confidence 8999988887765544433
No 71
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.81 E-value=2.4e-06 Score=80.83 Aligned_cols=345 Identities=14% Similarity=0.138 Sum_probs=203.8
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC-------CCCHHHHHHHHHHHHHHcCCChhhH
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR-------EDYPQLQFEAAWALKNIVSGTSEDT 75 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~-------~~~~~v~~~a~~~L~~l~~~~~~~~ 75 (447)
+..+|+|++.+.-.+..+.+++... ......+...++|.+...... .+...+...+..+-..
T Consensus 643 rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~K--------- 711 (1172)
T KOG0213|consen 643 REFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAK--------- 711 (1172)
T ss_pred HhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHH---------
Confidence 3457888888888888888888763 444455666677777665432 1212222222222222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh--hHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHh
Q 013228 76 KVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA--RCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNF 152 (447)
Q Consensus 76 ~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l 152 (447)
+.....+..++.-+.+.++..|..++.++.++...-. ...+.+ +...+..++..+...+ ...+.-....++.+-
T Consensus 712 --vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~gfg~V~~~ 788 (1172)
T KOG0213|consen 712 --VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLGFGTVVNA 788 (1172)
T ss_pred --hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 2222345556666677777777777766666542211 111111 2223445555553222 223333444444333
Q ss_pred cCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHH
Q 013228 153 CAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG---TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRAL 229 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~ 229 (447)
.. .........++..++..|++..+.++..++..++.++.- ..+ .+.+...| -.|...|....+++.-..+
T Consensus 789 lg---~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~e-e~~m~~lG--vvLyEylgeeypEvLgsIL 862 (1172)
T KOG0213|consen 789 LG---GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGE-EKLMGHLG--VVLYEYLGEEYPEVLGSIL 862 (1172)
T ss_pred Hh---hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH-HHHHHHhh--HHHHHhcCcccHHHHHHHH
Confidence 22 222334466777888899999999999999999888731 111 12222233 2466778888888877777
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHH--HHHHHcCChHHHHHHHhcCch
Q 013228 230 QTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI--QAVIDAGLIGPLVNLLQNAEF 307 (447)
Q Consensus 230 ~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~--~~l~~~~~~~~L~~~l~~~~~ 307 (447)
.++..++....-....---.+++|.|..+|++. ..+++..+...++.+|..+++.. ...+. +.-.|+++|++-..
T Consensus 863 gAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkahkK 939 (1172)
T KOG0213|consen 863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHHHH
Confidence 766666532210000001137899999999999 99999999999999998655521 11222 33447778888889
Q ss_pred hHHHHHHHHHHHhcCCCCHHH-HHHHH----------------------H-cC---ChHHHHhhccCCCHHHHHHHHHHH
Q 013228 308 DIKNWAARAISNATFGGTHEQ-IKYLV----------------------R-EG---CIKPLCDLLLCADPEIVTVFLKGL 360 (447)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~~~-~~~l~----------------------~-~~---~l~~L~~ll~~~~~~~~~~a~~~l 360 (447)
.+|+.|...++.++..-.|.. ...|. + .| +++.|++-...++..++.-+++++
T Consensus 940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence 999999999999887543321 11111 1 12 244444444456667888889999
Q ss_pred HHHHHhhhhh
Q 013228 361 EKILKVGEAE 370 (447)
Q Consensus 361 ~~l~~~~~~~ 370 (447)
.-++++-...
T Consensus 1020 sf~Feyigem 1029 (1172)
T KOG0213|consen 1020 SFMFEYIGEM 1029 (1172)
T ss_pred HHHHHHHHHH
Confidence 8888865443
No 72
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=4e-07 Score=88.91 Aligned_cols=252 Identities=17% Similarity=0.194 Sum_probs=187.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 120 (447)
+|.+++.|-++- -|..|+..|+....-.+-....-..-|+.|..+++|+++-.++|-..+.+...+-.-++.|+..+
T Consensus 474 LPiVLQVLLSQv---HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL 550 (1387)
T KOG1517|consen 474 LPIVLQVLLSQV---HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL 550 (1387)
T ss_pred cchHHHHHHHHH---HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH
Confidence 455555554443 26678888888887777777778888999999999999999999999999999887778898888
Q ss_pred HhcCCHHHHHHHhcccc--chhHHHHHHHHHHHhcCCCCCCChhhH-hhhHHHHHHhhccC-ChhHHHHHHHHHHHhccC
Q 013228 121 LSEEALIPLLTQLNKHA--KLSMLRIATWTLSNFCAGKPKPIFDQV-RPALPALAQLVHSN-DKEVMTDACRALFYLSEG 196 (447)
Q Consensus 121 ~~~~~l~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~ 196 (447)
.+.++-...++.|..+. +.+-+..++.+|..++.+.+..+.... .+++...+..+.++ .+-++..++-+|+.|.++
T Consensus 551 vKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d 630 (1387)
T KOG1517|consen 551 VKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED 630 (1387)
T ss_pred HhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence 88888777777774422 456777899999999998755555444 56777888888885 688899999999999977
Q ss_pred CcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC----ChhhHHHH------------HhcCCh---HHHHH
Q 013228 197 TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG----DDFQTQCI------------INCGAL---PYLLG 257 (447)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~l---~~l~~ 257 (447)
.+...=.-.+.+..+.|..+|.++-++||..|+.+|+.+... .++....+ ++..+. -.++.
T Consensus 631 ~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~ 710 (1387)
T KOG1517|consen 631 YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLA 710 (1387)
T ss_pred cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHH
Confidence 655432334567889999999999999999999999999874 22222211 121122 25666
Q ss_pred hhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 013228 258 LLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIG 296 (447)
Q Consensus 258 ~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~ 296 (447)
.++.+ .+-++.+.+-+++.+..+.........-....+
T Consensus 711 ~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~ 748 (1387)
T KOG1517|consen 711 LVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP 748 (1387)
T ss_pred HHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence 77777 899999999999998886655554444333333
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.79 E-value=5.5e-07 Score=80.60 Aligned_cols=274 Identities=17% Similarity=0.196 Sum_probs=188.2
Q ss_pred hhhhhccCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 013228 32 TEEVIPFGVVPRFVEFLMREDY-PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSDDIREQAVCALGNV 109 (447)
Q Consensus 32 ~~~~~~~~~v~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l 109 (447)
.+.+...|++..|++++..++. ..++.+|.+.|-.+.. .++++.+...| +..++.+-+. ..++..+..+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3556667899999999999873 4579999999999876 67888888877 6666665543 5789999999999999
Q ss_pred hcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCChhhH-hhhHHHHHHhhccCChhHHHHHH
Q 013228 110 AADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQV-RPALPALAQLVHSNDKEVMTDAC 187 (447)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~al 187 (447)
-.++.+....+...|++..++--. ...++.+.++++.+|.|++.+. ...+..++ ..+-.-|+.+-.+.|+-.+.++|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 988888778888999999988877 6677999999999999998776 22222222 44444566666677888999999
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhH
Q 013228 188 RALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSI 267 (447)
Q Consensus 188 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v 267 (447)
-+++-++.+.+.. ..+.++|.+...-.++.+-++..... --...+.+. -...++.|+.+|.+. ..+.
T Consensus 329 lAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKEVE-REVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhhhh-HHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence 9999998665432 34556677666666665544432111 000111111 123567888999877 5555
Q ss_pred HHHHHHHHHHHhc-CCHH-HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 268 KTDACWTISNITA-GNSE-HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 268 ~~~a~~~l~nl~~-~~~~-~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
+..+++-++.=+. .+.. ..+.+.+-|.++.|-++.++.+..-...|..+|.-+-.
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 5555544443222 1111 12345577899999999887776655666666665543
No 74
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=1e-07 Score=86.54 Aligned_cols=286 Identities=16% Similarity=0.211 Sum_probs=189.6
Q ss_pred hhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 013228 32 TEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA 111 (447)
Q Consensus 32 ~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~ 111 (447)
+.-+.+..+++.|+++|+.|+ ..+..-+...++|..-..+..+..+...|++..|+.++.+.+..+|....|++..+..
T Consensus 424 RTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy 502 (743)
T COG5369 424 RTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY 502 (743)
T ss_pred HhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence 445567788999999999988 6888888889999888788889999999999999999999999999999999999985
Q ss_pred CChhH-HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC--CChhhH------hhhHHHHHHhhccCChhH
Q 013228 112 DSARC-RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK--PIFDQV------RPALPALAQLVHSNDKEV 182 (447)
Q Consensus 112 ~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~------~~~l~~l~~ll~~~~~~v 182 (447)
+..+. +-.....-++..++... ++++..++..++..+.|++.+... ...... .-....++..++..+|-.
T Consensus 503 ncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~ 581 (743)
T COG5369 503 NCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPME 581 (743)
T ss_pred cCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchh
Confidence 54432 22445566788999998 888999999999999999875422 111111 235667777888888877
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhc----CC-------CCchhHhHHHHHHHHhhcCChhhHHHHHhcC
Q 013228 183 MTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELL----GH-------PSPSVLTRALQTVVNIAAGDDFQTQCIINCG 250 (447)
Q Consensus 183 ~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL----~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 250 (447)
....+..|.+++..++.....+.+. ..+..+...| .+ ....+..+-.....++....+.......-..
T Consensus 582 i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p 661 (743)
T COG5369 582 ILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTP 661 (743)
T ss_pred hhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCC
Confidence 7778888888887666554444333 3444433333 21 1112222222222233322221111111000
Q ss_pred ChHHHHHhhccCCchhHHHHHHHHHHHHhc---CC------HHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 251 ALPYLLGLLIHNHKKSIKTDACWTISNITA---GN------SEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 251 ~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~---~~------~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
-.+.. +--....+.+.-.+..|.+.|+.. ++ .+.++.+.+.|+-+.+..+...+++.+|+.+-.+|.++
T Consensus 662 ~~D~~-~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 662 HLDNM-KKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred Ccccc-ccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 01100 001111245677778888888654 12 25566677787777777777777889999999999886
No 75
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.75 E-value=4e-06 Score=81.40 Aligned_cols=352 Identities=14% Similarity=0.111 Sum_probs=217.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++.+.+.|-+.|+.|+.-|.+=+... .-..+.=-+..++..++++|.+.+ .+||..|++|++-++..-++.+-.
T Consensus 11 lekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le---- 84 (1233)
T KOG1824|consen 11 LEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE---- 84 (1233)
T ss_pred HHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH----
Confidence 45678889999999998888766653 222222233457889999999999 899999999999998644443321
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc----c-ccchhHHHHHHHHHHHhcCCC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN----K-HAKLSMLRIATWTLSNFCAGK 156 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~----~-~~~~~~~~~a~~~L~~l~~~~ 156 (447)
..++.|+.-+-++....|..+.-.|......-++.........+.+.+...+. . .....++..++..+..+....
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 23455666554555555554444443333222222222223334444444442 2 223346777777776665544
Q ss_pred CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHh
Q 013228 157 PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNI 235 (447)
Q Consensus 157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l 235 (447)
...-......++..++.-+.++...+++.++.+|+.++...+.. .-.++++.|.+-|.. ..+...+.-..+|+.+
T Consensus 165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 23333345667777777888889999999999999999654432 112456666666644 4455556667788888
Q ss_pred hcCChhhHHHHHhcCChHHHHHhh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--------
Q 013228 236 AAGDDFQTQCIINCGALPYLLGLL---IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN-------- 304 (447)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~l~~~l---~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-------- 304 (447)
++........- -...++.+.+.. ... +.++|+....++..+....|..+-..+.. ++..+++.+..
T Consensus 241 ~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~yd~ 317 (1233)
T KOG1824|consen 241 CRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNYDT 317 (1233)
T ss_pred HHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCCCC
Confidence 76544332211 124677777777 555 78999999888887776544433222211 22223322210
Q ss_pred --------------------------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 013228 305 --------------------------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358 (447)
Q Consensus 305 --------------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~ 358 (447)
-++.||+.|+.++..+... ..+....+.+ .+-+.++.-+++..+.++...+.
T Consensus 318 ~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~ 395 (1233)
T KOG1824|consen 318 EEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADVFH 395 (1233)
T ss_pred ccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHH
Confidence 0246899999999888764 3444444433 34567777788888888888888
Q ss_pred HHHHHHHhhh
Q 013228 359 GLEKILKVGE 368 (447)
Q Consensus 359 ~l~~l~~~~~ 368 (447)
++..+++.-+
T Consensus 396 ~yi~ll~qt~ 405 (1233)
T KOG1824|consen 396 AYIALLKQTR 405 (1233)
T ss_pred HHHHHHHcCC
Confidence 8877776543
No 76
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.73 E-value=2.8e-06 Score=76.22 Aligned_cols=240 Identities=11% Similarity=0.114 Sum_probs=168.6
Q ss_pred HhhhHHHHHHhhccCCh--hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCCh
Q 013228 164 VRPALPALAQLVHSNDK--EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~ 240 (447)
..+.+..|++++..++. .++..+.+.|-.+... ++.+.+...| +..++.+.+. ...+.....+.+|.++..+++
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 36788999999998864 5688899888877632 2234455555 4555555543 446778889999999999999
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHH
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~ 319 (447)
+....++..|+++.++-..+.. ++.+.+.++.+|+|++. +..+..+.+++..+-+.|..+..+.|.-+|..|+.+.+.
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 9999999999999999999988 89999999999999987 455667778888888888888888899999999999999
Q ss_pred hcCCCCHHHHHHHHHcCC---hHHHHhhccCC--------------------------CHHHHHHHHHHHHHHHHhhhhh
Q 013228 320 ATFGGTHEQIKYLVREGC---IKPLCDLLLCA--------------------------DPEIVTVFLKGLEKILKVGEAE 370 (447)
Q Consensus 320 l~~~~~~~~~~~l~~~~~---l~~L~~ll~~~--------------------------~~~~~~~a~~~l~~l~~~~~~~ 370 (447)
++.+. +.-..+-..|. +++++.-++-. ....-..++.+++-..+..-+.
T Consensus 334 lat~K--E~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs 411 (832)
T KOG3678|consen 334 LATNK--EVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS 411 (832)
T ss_pred hhhhh--hhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence 98853 33333333343 33333333210 0011123344443333322111
Q ss_pred hhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228 371 KNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (447)
.++ -...|.+.|.++.|.++..++++--.+.|.+.|.-+
T Consensus 412 --------~Q~-K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 412 --------LQG-KTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred --------hcc-chhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 112 267899999999999999988777666676666543
No 77
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=6.5e-06 Score=78.08 Aligned_cols=320 Identities=14% Similarity=0.106 Sum_probs=159.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHH
Q 013228 48 LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALI 127 (447)
Q Consensus 48 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 127 (447)
|++|+ +-+|-..++.|+.+=. ++... ..+|.+...|++.+..+|++|..++..+-.... ..+ .++-.
T Consensus 108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDape 174 (948)
T KOG1058|consen 108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPE 174 (948)
T ss_pred ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHH
Confidence 45566 5666666666666543 33222 356777778888999999999999988864321 111 12333
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHH---hhccCChhHHHHHHHHHHHhccCCcHHHHHH
Q 013228 128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQ---LVHSNDKEVMTDACRALFYLSEGTNDEIQAV 204 (447)
Q Consensus 128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~---ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 204 (447)
.+-..|....|+..+++|...|...-.. . .+..+.. -+.+-++.++...+..+...+...+...
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~D~E---r-------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~--- 241 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTTDPE---R-------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK--- 241 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhcCHH---H-------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh---
Confidence 3444555677788888877665543211 0 1111111 1111223333333333333332222211
Q ss_pred HHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh------------------hhHH---------------HHHhcCC
Q 013228 205 IEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD------------------FQTQ---------------CIINCGA 251 (447)
Q Consensus 205 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~------------------~~~~---------------~~~~~~~ 251 (447)
...+..+..+|.+.++.++..|..++.+++.... ...+ .+++ |.
T Consensus 242 --~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-~l 318 (948)
T KOG1058|consen 242 --ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-GL 318 (948)
T ss_pred --hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-HH
Confidence 1223344444443333333333333332222111 0000 0111 33
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---CchhHHHHHHHHHHHhcCCCCHHH
Q 013228 252 LPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN---AEFDIKNWAARAISNATFGGTHEQ 328 (447)
Q Consensus 252 l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~---~~~~v~~~a~~aL~~l~~~~~~~~ 328 (447)
+--++..|.++ +-++|+.+......++... +...+++. +-..+..--.. ++...|+.-..++..++.. -++.
T Consensus 319 ~mDvLrvLss~-dldvr~Ktldi~ldLvssr--Nvediv~~-Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~-Fp~~ 393 (948)
T KOG1058|consen 319 IMDVLRVLSSP-DLDVRSKTLDIALDLVSSR--NVEDIVQF-LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK-FPEV 393 (948)
T ss_pred HHHHHHHcCcc-cccHHHHHHHHHHhhhhhc--cHHHHHHH-HHHHHHhccccccccchHHHHHHHHHHHHHhhc-ChHH
Confidence 44445555566 6667766666655554421 11111110 00011111111 1234566777777777664 2333
Q ss_pred HHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHH
Q 013228 329 IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIH 408 (447)
Q Consensus 329 ~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~ 408 (447)
.. .+++.|++.+.+.++.....++..+...++..++.+ ..+. . ..++.+-.-.+.+++
T Consensus 394 aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-------------~~ii-~---~l~~~~~~irS~ki~ 451 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-------------ASII-E---KLLETFPQIRSSKIC 451 (948)
T ss_pred HH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-------------HHHH-H---HHHHhhhhhcccccc
Confidence 33 258888899999888777777777777777655432 2222 1 223333333567788
Q ss_pred HHHHHHHHHhcCCCC
Q 013228 409 EKSVKILETYWCGRV 423 (447)
Q Consensus 409 ~~a~~~l~~~~~~~~ 423 (447)
+-|.|++..|+..+.
T Consensus 452 rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 452 RGALWILGEYCEGLS 466 (948)
T ss_pred hhHHHHHHHHHhhhH
Confidence 888999998887655
No 78
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.70 E-value=3.8e-07 Score=84.30 Aligned_cols=267 Identities=16% Similarity=0.125 Sum_probs=170.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH--HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC-C
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR--DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP-K 158 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~ 158 (447)
-++..++.+|+++.+.+|..++...+.|+.--..|. +.+...|. .|.+.| ....+++.-..+.++..+..... .
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence 356778889999999999999999998863222121 12222221 234444 45567777776666666654331 1
Q ss_pred CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
....-..+++|.+...|++...++..+.+..++.++...++....--=..+-=-|+..|.+.+.++|+.|..+++.++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 11123478999999999999999999999999999987765432100012233466777788899999999999887753
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHH
Q 013228 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS 318 (447)
Q Consensus 239 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~ 318 (447)
-.. ..++..|+.-|+.. +...|.-...+++-.+... --..++|.|+.=...++..++.-.+.+++
T Consensus 761 iGP-------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~c-------gpfsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 761 IGP-------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYC-------GPFSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred cCH-------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhc-------CchhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 321 13455566666555 4444433333333333211 11236777777677788889998888988
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 319 NATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 319 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
.+..........++.. ..+.|...+.+.|+--+..+...+..+.-.+.
T Consensus 826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 8876543333444333 46667778888888778888888887765543
No 79
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4.7e-06 Score=76.49 Aligned_cols=344 Identities=11% Similarity=0.078 Sum_probs=209.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHH----HHHcCCChhhHHHH
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWAL----KNIVSGTSEDTKVV 78 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L----~~l~~~~~~~~~~~ 78 (447)
..+++.|..++..|+..+.+++.-...+. ...-..+...+.++....+ ..++..| +.+ ..+...+.. .+
T Consensus 91 ~cf~D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd-~~V~~~a-eLLdRLikdIVte~~~---tF 163 (675)
T KOG0212|consen 91 NCFSDQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSD-QNVRGGA-ELLDRLIKDIVTESAS---TF 163 (675)
T ss_pred HhccCccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCc-cccccHH-HHHHHHHHHhcccccc---cc
Confidence 45677888999999999998876531211 1222346677777776666 4555433 333 333332111 22
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH-hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-
Q 013228 79 IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL-SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK- 156 (447)
Q Consensus 79 ~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~- 156 (447)
-=.+++|.|-.-+...++..|...+.-|..|-.-++ .+.+. -...++-+.++| .+++.+++..+-.++..+...-
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHh
Confidence 222344555444555789999888888877754332 23332 123466677777 6777788877766666654332
Q ss_pred CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCch-hHhHHHHHH---
Q 013228 157 PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPS-VLTRALQTV--- 232 (447)
Q Consensus 157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-v~~~a~~~l--- 232 (447)
..+........++.++.-+.++++.++..|+.-+.....-.+.. -...-.|++..+++++.++.+. ++..+...-
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL 319 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence 12222234667888889999999999998887777766544432 2344568888889999876663 544443322
Q ss_pred HHhhcCChhhHHHHHhc-CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHH
Q 013228 233 VNIAAGDDFQTQCIINC-GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKN 311 (447)
Q Consensus 233 ~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~ 311 (447)
..++.... .... ++. .+++.+.+.+.++ ..+.|..+..-+..+-...+.+. ......+++.|+.-+.+.+.++..
T Consensus 320 ~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~vvl 395 (675)
T KOG0212|consen 320 LKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDEVVL 395 (675)
T ss_pred HHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhHHHH
Confidence 22222111 1111 332 3567888888888 88888888777776655444422 223456899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228 312 WAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 312 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
.+...+.+++...+..+... ++..|.++...+..-+...+--++.+++-.
T Consensus 396 ~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 396 LALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 99999999998654332222 244455555555444455555555555543
No 80
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.7e-05 Score=74.07 Aligned_cols=342 Identities=16% Similarity=0.131 Sum_probs=216.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
+-+..+.+.+|.....++..+......... ..+.+.+.++++... ..-+..+.+.+..+..+. ....+.+.+
T Consensus 103 ~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~~~~~~~ 174 (569)
T KOG1242|consen 103 EELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIESLKEFG 174 (569)
T ss_pred HhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHhhhhhhh
Confidence 345566778888888888776554311111 225677888888777 688888999999888743 344566678
Q ss_pred ChHHHHHhhCCCCHHHHH-HHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 83 AVPIFVKLLASPSDDIRE-QAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~-~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
++..+.....+.....++ .+..+.-..+..- +.....+ ...++.++... .+....++..+..+...+.+.-+.
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi--v~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~-- 249 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI--VPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSA-- 249 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH--HhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCc--
Confidence 888899988875444433 3333333332111 1110111 11344455544 455678888877777766654311
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
..+..++|.++.-+..........++..++.++...+.+.. ..-..++|.+.+.|.+..++++..+..++..++...+
T Consensus 250 -~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 250 -YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred -chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 12344566666555555777888899999999887776654 5556899999999999999999999999999886433
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA---GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL 317 (447)
.- . ++ ..++.|++.+.++ ...+. ++...|+.=.. -.+... .-++|.|.+-+...+..+++.++..+
T Consensus 328 N~-d--I~-~~ip~Lld~l~dp-~~~~~-e~~~~L~~ttFV~~V~~psL-----almvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 328 NP-D--IQ-KIIPTLLDALADP-SCYTP-ECLDSLGATTFVAEVDAPSL-----ALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred cH-H--HH-HHHHHHHHHhcCc-ccchH-HHHHhhcceeeeeeecchhH-----HHHHHHHHHHHhhccchhhhhHHHHH
Confidence 11 1 11 3678888888877 43222 22222221111 011100 11455566666666788889999999
Q ss_pred HHhcCCC-CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228 318 SNATFGG-THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK 371 (447)
Q Consensus 318 ~~l~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 371 (447)
.|++.-- ++.....++. .+++-+-..+....|++|..+..+|..+.+..+..+
T Consensus 397 dNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~ 450 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS 450 (569)
T ss_pred HHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 9998754 3433333222 256666677777889999999999988887655443
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.69 E-value=1.4e-05 Score=72.91 Aligned_cols=330 Identities=15% Similarity=0.063 Sum_probs=202.2
Q ss_pred CCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHH
Q 013228 69 SGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATW 147 (447)
Q Consensus 69 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~ 147 (447)
...+..+..+.-....+.+..++-+++.++|..+.+++..+..+.... ..+.+.+.-..++.-|..+. +..-+++|+.
T Consensus 12 ~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALk 90 (371)
T PF14664_consen 12 KRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALK 90 (371)
T ss_pred HhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHH
Confidence 334433333333334455554454555999999999999999887654 44555565555555554433 3445778888
Q ss_pred HHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhH
Q 013228 148 TLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227 (447)
Q Consensus 148 ~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~ 227 (447)
.+..+.... ......-.+++..++....+.++..+..|+.+++.++-.+++ .+...|++..+.+.+.++...+...
T Consensus 91 liR~~l~~~-~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~ 166 (371)
T PF14664_consen 91 LIRAFLEIK-KGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISES 166 (371)
T ss_pred HHHHHHHhc-CCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHH
Confidence 888887663 222334578899999999999999999999999999977664 4678899999999998766667777
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHH
Q 013228 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN------HKK--SIKTDACWTISNITAGNSEHIQAVIDA-GLIGPL 298 (447)
Q Consensus 228 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~------~~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~-~~~~~L 298 (447)
.+.++-.+..... .++.+...--++.++.-+.+. .+. +.-..+..++..+...-+.......+. ..+..|
T Consensus 167 l~~~lL~lLd~p~-tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL 245 (371)
T PF14664_consen 167 LLDTLLYLLDSPR-TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL 245 (371)
T ss_pred HHHHHHHHhCCcc-hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence 8888888876443 334343323344444444322 122 233445555555554332222122222 478889
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH------cCCh---HHHHhhccCCC---HHHHHHHHHHHHHHHHh
Q 013228 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR------EGCI---KPLCDLLLCAD---PEIVTVFLKGLEKILKV 366 (447)
Q Consensus 299 ~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~l---~~L~~ll~~~~---~~~~~~a~~~l~~l~~~ 366 (447)
+..+..+.+++|......+..+..-..+.....+.. .|.. ..+..-..... +.....-...+.+..
T Consensus 246 v~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~-- 323 (371)
T PF14664_consen 246 VDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYL-- 323 (371)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHH--
Confidence 999999999999999999999987654432222111 1111 00000000000 000000011111111
Q ss_pred hhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHhcC
Q 013228 367 GEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD-NDEIHEKSVKILETYWC 420 (447)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~ 420 (447)
.-....|.+.|.++.|.++.... ++.+..+|.-+|..++.
T Consensus 324 --------------aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 324 --------------ALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred --------------HHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 11345677899999999997665 88999999999987753
No 82
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.9e-05 Score=75.45 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=38.2
Q ss_pred HHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228 211 PRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG 281 (447)
Q Consensus 211 ~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~ 281 (447)
+..-.++.+.++.+...++++.+.++-... .. ++++.|+.+|+++ ..++......+..++..
T Consensus 290 ~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 290 QSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN--REVQYVVLQNIATISIK 351 (968)
T ss_pred HhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC--CcchhhhHHHHHHHHhc
Confidence 334455666778888888888888874332 11 3466788888764 44555555555555443
No 83
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.6e-05 Score=67.70 Aligned_cols=272 Identities=16% Similarity=0.150 Sum_probs=175.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH-hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL-SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD 162 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (447)
...++.++.+.+|.++..|+..+..+... ..+.... +...++.+.+++ ...++ .+.|+.++.|++... .....
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~-~~~~~--~~~a~~alVnlsq~~-~l~~~ 78 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLL-KDLDP--AEPAATALVNLSQKE-ELRKK 78 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHc-cCccc--ccHHHHHHHHHHhhH-HHHHH
Confidence 34678899999999999999999999876 2332222 223466677777 44444 677899999999875 34444
Q ss_pred hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHH------hCcHHHHHHhcCCCCc--hhHhHHHHHHHH
Q 013228 163 QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE------AGVCPRLVELLGHPSP--SVLTRALQTVVN 234 (447)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~------~~~~~~L~~lL~~~~~--~v~~~a~~~l~~ 234 (447)
....++..++.++.++....-...+..+.|++...+.....+.. .|++.....+...+-. .-....+.++.|
T Consensus 79 ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 79 LLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHHHHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 44557777888888887888888999999999876654332221 3455555555543222 223445667777
Q ss_pred hhcCChhhHHHHHhcCCh--HHHHHhhccCCchhHHH-HHHHHHHHHhcCCHHHHHHHH-HcCChHHHH-----------
Q 013228 235 IAAGDDFQTQCIINCGAL--PYLLGLLIHNHKKSIKT-DACWTISNITAGNSEHIQAVI-DAGLIGPLV----------- 299 (447)
Q Consensus 235 l~~~~~~~~~~~~~~~~l--~~l~~~l~~~~~~~v~~-~a~~~l~nl~~~~~~~~~~l~-~~~~~~~L~----------- 299 (447)
++.... .+..+.+...+ ..+..+- +. +..+|+ ..+++|.|+|...+.+-..+- ...++|.++
T Consensus 159 ls~~~~-gR~l~~~~k~~p~~kll~ft-~~-~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 159 LSQFEA-GRKLLLEPKRFPDQKLLPFT-SE-DSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred Hhhhhh-hhhHhcchhhhhHhhhhccc-cc-chhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 776544 34445554422 2233333 34 556665 467889998876543322221 112233222
Q ss_pred ----------HHHh-----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHH
Q 013228 300 ----------NLLQ-----NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKI 363 (447)
Q Consensus 300 ----------~~l~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l 363 (447)
.++. .+++.+|..-..+|.-++. +...++.+.+.|+.+.+-.+-+. .+++++.++......+
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca--T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA--TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQML 313 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh--hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 2332 2478899999999999988 66788999899988888777665 5678888877776666
Q ss_pred HHh
Q 013228 364 LKV 366 (447)
Q Consensus 364 ~~~ 366 (447)
++.
T Consensus 314 v~~ 316 (353)
T KOG2973|consen 314 VRL 316 (353)
T ss_pred Hhc
Confidence 654
No 84
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=5.7e-06 Score=70.36 Aligned_cols=270 Identities=15% Similarity=0.209 Sum_probs=171.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
+|.++.+.+|.++..|+..+..+.... ...-.--+...++.+.++++... + ...|+.++.|++. ..+.++.+++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~~ll~ 81 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRKKLLQ 81 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHHHHHH
Confidence 467889999999999999988887651 11111112346888999998887 4 6789999999999 7888888887
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcC-----CHHHHHHHh-ccccch-hHHHHHHHHHHHhc
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEE-----ALIPLLTQL-NKHAKL-SMLRIATWTLSNFC 153 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~-----~l~~l~~~l-~~~~~~-~~~~~a~~~L~~l~ 153 (447)
. .+..++..+.++...+.+..+..|+|++.+...+........ ++..++... ..+.+. .-..+.+.++.+++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 7 788888888887778888999999999998877665544322 333333333 222221 23455777888888
Q ss_pred CCCCCCChhhHhhhHH--HHHHhhccCChhHHHH-HHHHHHHhccCCcHHHHHHHHh--CcHHHHH--------------
Q 013228 154 AGKPKPIFDQVRPALP--ALAQLVHSNDKEVMTD-ACRALFYLSEGTNDEIQAVIEA--GVCPRLV-------------- 214 (447)
Q Consensus 154 ~~~~~~~~~~~~~~l~--~l~~ll~~~~~~v~~~-al~~l~~l~~~~~~~~~~~~~~--~~~~~L~-------------- 214 (447)
+....+........+| .+..+-. .+..+|.. .+..|.|.+...... ..+++. .+++.++
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 7753333333322222 3334433 56666544 567788877543332 222221 2333322
Q ss_pred -------HhcC-----CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 215 -------ELLG-----HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 215 -------~lL~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
+.|. .+++.+|..-+.+|.-+|.... .++.+...|+.+.+-.+-+...+++++..+-.....+..
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 2221 2567899999999998887444 557777777777777766665466666554444444433
No 85
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.66 E-value=5.8e-06 Score=80.35 Aligned_cols=336 Identities=15% Similarity=0.148 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHHccCCCCchh-hhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh-HHHHHhCCChHHH
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTE-EVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSED-TKVVIDHGAVPIF 87 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L 87 (447)
+-.+..|++++..++... -... .-+-..+++.+...+.... ...+...+.++-.+....... .....+ -++..+
T Consensus 623 EiTRl~AvkAlt~Ia~S~--l~i~l~~~l~~il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el 698 (1233)
T KOG1824|consen 623 EITRLTAVKALTLIAMSP--LDIDLSPVLTEILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELLE-AVLVEL 698 (1233)
T ss_pred hhHHHHHHHHHHHHHhcc--ceeehhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHh
Confidence 445555555555555431 1111 1112234555555555554 455555555555444321111 111111 233444
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccch----------------------------
Q 013228 88 VKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKL---------------------------- 139 (447)
Q Consensus 88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~---------------------------- 139 (447)
..++...+..+-+.++.++..+....+..- .-....+++.++.++++..=.
T Consensus 699 ~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~ 777 (1233)
T KOG1824|consen 699 PPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLL 777 (1233)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 455556677888888888888887666432 222344667777776321100
Q ss_pred -----------------hHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHH
Q 013228 140 -----------------SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDE 200 (447)
Q Consensus 140 -----------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~ 200 (447)
......+.+...++...+... ......+..-++ ..+..++.-++-.++.+..+.+..
T Consensus 778 s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s----~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s 853 (1233)
T KOG1824|consen 778 SLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKS----KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS 853 (1233)
T ss_pred HHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccc----hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC
Confidence 000001111111111111000 111112222222 224556666666666666543321
Q ss_pred HHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh-hHHHHHh---c-------------------------CC
Q 013228 201 IQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF-QTQCIIN---C-------------------------GA 251 (447)
Q Consensus 201 ~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~---~-------------------------~~ 251 (447)
-..++...+++.+++++++++.+|..+||+++.++-. +...+.+ . ..
T Consensus 854 ----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~ 929 (1233)
T KOG1824|consen 854 ----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPY 929 (1233)
T ss_pred ----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhh
Confidence 1235566888999999999999999999999986532 2221111 0 01
Q ss_pred hHHHHHhh----ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHH
Q 013228 252 LPYLLGLL----IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHE 327 (447)
Q Consensus 252 l~~l~~~l----~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~ 327 (447)
++.+..+| ... ....|.-.+.||+.++...|+ ..+|.|-..+.++.+..|..+..++...... .++
T Consensus 930 v~~IW~lL~k~cE~~-eegtR~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd-~p~ 999 (1233)
T KOG1824|consen 930 VEKIWALLFKHCECA-EEGTRNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSISD-QPQ 999 (1233)
T ss_pred HHHHHHHHHHhcccc-hhhhHHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCCcchhhhhhheeeeeecC-CCC
Confidence 11111111 222 334455555566666554444 2688898899999999999998888766554 333
Q ss_pred HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 328 QIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 328 ~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
....+. ...+..+..+++++|.+++..|+.++...+.+-+.
T Consensus 1000 ~id~~l-k~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 1000 PIDPLL-KQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred ccCHHH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 333322 23577888899999999999999999998876544
No 86
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.5e-05 Score=74.66 Aligned_cols=291 Identities=17% Similarity=0.166 Sum_probs=158.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA 83 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 83 (447)
.|+++|+.+|..|++.|..+=-. ++..=++-.+-++..++. +-||..|+.++-++-.-.++....+
T Consensus 116 ~L~DpN~LiRasALRvlSsIRvp--------~IaPI~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL----- 181 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRVP--------MIAPIMLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL----- 181 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcchh--------hHHHHHHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----
Confidence 45666666666666665443111 010001122223445566 7888888888888776566655533
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCC---
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKP--- 159 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~--- 159 (447)
++.+-.+|.+.++.+.-.|+.++-.+|-+. -+.+. +-...+.+++.+-.++ -+......|...++.. +.+
T Consensus 182 ~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLIH--knyrklC~ll~dvdeW-gQvvlI~mL~RYAR~~l~~P~~~ 255 (968)
T KOG1060|consen 182 EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLIH--KNYRKLCRLLPDVDEW-GQVVLINMLTRYARHQLPDPTVV 255 (968)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHhh--HHHHHHHhhccchhhh-hHHHHHHHHHHHHHhcCCCcccc
Confidence 345666777788888888888888887432 12221 2345566666322221 1222333333333332 111
Q ss_pred ---------------------Ch----hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 013228 160 ---------------------IF----DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLV 214 (447)
Q Consensus 160 ---------------------~~----~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~ 214 (447)
.. .-..-+++..-.++.+.++.+...++.+++.++... ... .++..|+
T Consensus 256 ~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLv 328 (968)
T KOG1060|consen 256 DSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALV 328 (968)
T ss_pred ccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHH
Confidence 00 011334555666788899999999999999998433 222 4577888
Q ss_pred HhcCCCCchhHhHHHHHHHHhhcCChhhHHHHH-------------------------hc----CChHHHHHhhccCCch
Q 013228 215 ELLGHPSPSVLTRALQTVVNIAAGDDFQTQCII-------------------------NC----GALPYLLGLLIHNHKK 265 (447)
Q Consensus 215 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-------------------------~~----~~l~~l~~~l~~~~~~ 265 (447)
.+|+++ ..++...+..+..++...+......+ +. .+++-+...+++. +.
T Consensus 329 rLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~ 406 (968)
T KOG1060|consen 329 RLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSS-DR 406 (968)
T ss_pred HHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-ch
Confidence 887653 45666666667666644332111111 11 1122233333444 44
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHH
Q 013228 266 SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQ 328 (447)
Q Consensus 266 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~ 328 (447)
.+...++.+|+.++..... +....+..|+.++.+.+..|..+++..|..+......+.
T Consensus 407 ~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 407 SFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred hHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence 5566666666666543211 122245667777777777777777777777766543333
No 87
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=0.0003 Score=60.70 Aligned_cols=334 Identities=14% Similarity=0.135 Sum_probs=216.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCc---hhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAP---TEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
+|..++..++.-++..+..++....... +..++..++++.++.++-.++ .++...|...+..++. .+.....+.+
T Consensus 90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaaleaiFe 167 (524)
T KOG4413|consen 90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAALEAIFE 167 (524)
T ss_pred cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHHHHHhcc
Confidence 5778888999999999999987642212 455668899999999999888 8999999999999998 7777777877
Q ss_pred CCChHHHH--HhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228 81 HGAVPIFV--KLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158 (447)
Q Consensus 81 ~~~i~~L~--~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 158 (447)
++....+- .+-...+.-.|..+...+-.+.+-++.....+...|.+..+..-++...|.-++.++......++.....
T Consensus 168 SellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHg 247 (524)
T KOG4413|consen 168 SELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG 247 (524)
T ss_pred cccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh
Confidence 77665543 2333356677778888888898888888888888899999998885557777888888888888876544
Q ss_pred CChhhHhhhHHHHHHhhcc--CChhHHHHHHHHHHHhccCCcHH---HHHHHHh--CcHHHHHHhcCCCCchhHhHHHHH
Q 013228 159 PIFDQVRPALPALAQLVHS--NDKEVMTDACRALFYLSEGTNDE---IQAVIEA--GVCPRLVELLGHPSPSVLTRALQT 231 (447)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~--~~~~v~~~al~~l~~l~~~~~~~---~~~~~~~--~~~~~L~~lL~~~~~~v~~~a~~~ 231 (447)
.......+++..+...+.. ++|--.-.++...+.+.....-. -+.+.+. -.++.-...+..+++..+..|..+
T Consensus 248 reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDa 327 (524)
T KOG4413|consen 248 REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDA 327 (524)
T ss_pred hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHH
Confidence 4444457778877777753 33333333444333333211000 0111111 123344455667889999999999
Q ss_pred HHHhhcCChhhHHHHHhcCC--hHHHH-HhhccCCchhHHHHHHHHHHHHhc---CCHHHH---------HH-HHH----
Q 013228 232 VVNIAAGDDFQTQCIINCGA--LPYLL-GLLIHNHKKSIKTDACWTISNITA---GNSEHI---------QA-VID---- 291 (447)
Q Consensus 232 l~~l~~~~~~~~~~~~~~~~--l~~l~-~~l~~~~~~~v~~~a~~~l~nl~~---~~~~~~---------~~-l~~---- 291 (447)
++.+....+ ..+.+...|- .+.++ .....+ ...-+..+..+|.+++. -.++++ .. +.+
T Consensus 328 lGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaq 405 (524)
T KOG4413|consen 328 LGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQ 405 (524)
T ss_pred HHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhh
Confidence 998876444 4444444433 22332 233222 23334566677777764 122211 11 111
Q ss_pred ---cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHH-HHHcCChHHHHh
Q 013228 292 ---AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKY-LVREGCIKPLCD 343 (447)
Q Consensus 292 ---~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-l~~~~~l~~L~~ 343 (447)
..-+..+..+++.+.++++..+...+..++.. |...+. +...++++...+
T Consensus 406 stkldPleLFlgilqQpfpEihcAalktfTAiaaq--PWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 406 STKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ--PWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred ccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC--cHHHHHHhcCccceeeecc
Confidence 13355666777788999999999999988873 344433 334455554443
No 88
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.58 E-value=1.3e-06 Score=64.64 Aligned_cols=154 Identities=8% Similarity=0.041 Sum_probs=127.9
Q ss_pred ChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHH
Q 013228 251 ALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIK 330 (447)
Q Consensus 251 ~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 330 (447)
.+..|+.-.....+.+.+.....-|.|++.+ |-+...+.+.++++..+..+..++..+...++..|+|++. ++...+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 4455666565555888899888888888654 6778889999999999999999999999999999999998 667788
Q ss_pred HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHH
Q 013228 331 YLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEK 410 (447)
Q Consensus 331 ~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~ 410 (447)
.+.+.+.++.++..+.++...++..++..+..+...+.. .+..+.....++.++....+.+.+.+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL 160 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL 160 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence 889999999999999999999999999888887655443 3566777788888888888888888888
Q ss_pred HHHHHHHhcC
Q 013228 411 SVKILETYWC 420 (447)
Q Consensus 411 a~~~l~~~~~ 420 (447)
|...++++..
T Consensus 161 a~~fl~~~~~ 170 (173)
T KOG4646|consen 161 ASAFLDKHVH 170 (173)
T ss_pred HHHHHHhhcc
Confidence 8888887754
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00011 Score=69.60 Aligned_cols=348 Identities=17% Similarity=0.149 Sum_probs=203.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
+..+.+=|.+.+ +.....|+.+++|+.. .+++..+.. -+-++|.+ ..+-+++.++.+|..|-+.+|.
T Consensus 113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~-----DI~KlLvS~~~~~~vkqkaALclL~L~r~spD--- 181 (938)
T KOG1077|consen 113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD-----DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD--- 181 (938)
T ss_pred HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh-----hhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---
Confidence 334445556667 7888899999999875 455554442 23355554 3467888888888888876653
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-------------CChhHHHH
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS-------------NDKEVMTD 185 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-------------~~~~v~~~ 185 (447)
.+-..+....++.+| .+.+-.+...+...+..++...+..........+..|.+.... +.|=++..
T Consensus 182 l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 333334577888888 6666777777777888888766444433334444444443331 33556677
Q ss_pred HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--Cc-----hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh
Q 013228 186 ACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP--SP-----SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL 258 (447)
Q Consensus 186 al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~ 258 (447)
+++.|.+.-...+.... ..-..+++.++...+.+ +. ..+...+.-.-+++.+.+...+.+. ..+..|-++
T Consensus 261 l~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f 337 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF 337 (938)
T ss_pred HHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence 77777776432222111 11113344444444421 11 1222333333344433332223222 367788888
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 013228 259 LIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREGC 337 (447)
Q Consensus 259 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~ 337 (447)
+.+. ...+|.-|...++.++... . ....++.. .+.++..|+ ..|..+|+.|+..|..|+..++. +. +
T Consensus 338 ls~r-E~NiRYLaLEsm~~L~ss~-~-s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Na---k~-----I 405 (938)
T KOG1077|consen 338 LSHR-ETNIRYLALESMCKLASSE-F-SIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA---KQ-----I 405 (938)
T ss_pred hhcc-cccchhhhHHHHHHHHhcc-c-hHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhH---HH-----H
Confidence 9888 8899999999999888752 2 22333332 667788888 67999999999999999976443 33 4
Q ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHH------HhchHHHHHHHhcCCCHHHHHHH
Q 013228 338 IKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVE------EAEGLEKIENLRSHDNDEIHEKS 411 (447)
Q Consensus 338 l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~l~~l~~~~~~~v~~~a 411 (447)
++-|.++|.+.+..+++...--+.-+.+.-.... .+........+. ..+.+.++.++. -.+++++..|
T Consensus 406 V~elLqYL~tAd~sireeivlKvAILaEKyAtDy-----~WyVdviLqLiriagd~vsdeVW~RvvQiV-vNnedlq~ya 479 (938)
T KOG1077|consen 406 VAELLQYLETADYSIREEIVLKVAILAEKYATDY-----SWYVDVILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGYA 479 (938)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc-----chhHHHHHHHHHHhcccccHHHHHHhheeE-ecchhhhHHH
Confidence 6778888888888777654333333333221111 122222223332 223344444432 2468888888
Q ss_pred HHHHHHhcCC
Q 013228 412 VKILETYWCG 421 (447)
Q Consensus 412 ~~~l~~~~~~ 421 (447)
..-+..|++.
T Consensus 480 ak~~fe~Lq~ 489 (938)
T KOG1077|consen 480 AKRLFEYLQK 489 (938)
T ss_pred HHHHHHHHhh
Confidence 8877777653
No 90
>PF05536 Neurochondrin: Neurochondrin
Probab=98.55 E-value=0.0002 Score=69.17 Aligned_cols=378 Identities=15% Similarity=0.105 Sum_probs=224.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCC--CchhhhhccCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHcCCChh
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARS--APTEEVIPFGVVPRFVEFLMRED------YPQLQFEAAWALKNIVSGTSE 73 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~~v~~L~~ll~~~~------~~~v~~~a~~~L~~l~~~~~~ 73 (447)
+++|++.+.+.++.++..+.+++..... ...+.+.+.=+.+.+-++|.++. ....+.-|+.+|..++. .++
T Consensus 11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~~~ 89 (543)
T PF05536_consen 11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-DPE 89 (543)
T ss_pred HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-Chh
Confidence 3567888888888888888898876421 12345777777888889998732 25678888999999998 566
Q ss_pred hHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228 74 DTKVVIDHGAVPIFVKLLASPSD-DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF 152 (447)
Q Consensus 74 ~~~~~~~~~~i~~L~~ll~~~~~-~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (447)
....---.+-||.|+..+.+.+. .+...|..+|..++.. +..++.+.+.|.++.+.+.+.+ .+...+.++.++.++
T Consensus 90 ~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~L 166 (543)
T PF05536_consen 90 LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNL 166 (543)
T ss_pred hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 54322222568999999988766 9999999999999955 4568888899999999999954 455677888888887
Q ss_pred cCCCCCC----ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHH-HHHHHH----hCcHHHHHHhcCC-CCc
Q 013228 153 CAGKPKP----IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE-IQAVIE----AGVCPRLVELLGH-PSP 222 (447)
Q Consensus 153 ~~~~~~~----~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~-~~~~~~----~~~~~~L~~lL~~-~~~ 222 (447)
+...... .......+++.+...+.......+-..+..|..+....+.. ...... ..+...+..++++ ..+
T Consensus 167 ls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~ 246 (543)
T PF05536_consen 167 LSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTP 246 (543)
T ss_pred HHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCH
Confidence 7654221 22223456667777777666777777888888887655311 111111 2334445555544 445
Q ss_pred hhHhHHHHHHHHhhcCCh-------------hhHHHHHhcCC------hHHHHHhhccCCchhHH--HHHHHH-----HH
Q 013228 223 SVLTRALQTVVNIAAGDD-------------FQTQCIINCGA------LPYLLGLLIHNHKKSIK--TDACWT-----IS 276 (447)
Q Consensus 223 ~v~~~a~~~l~~l~~~~~-------------~~~~~~~~~~~------l~~l~~~l~~~~~~~v~--~~a~~~-----l~ 276 (447)
.-|..++...+.+..... .....+++.-. ++.+......+...... -.+|+. +.
T Consensus 247 ~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~ 326 (543)
T PF05536_consen 247 SQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIG 326 (543)
T ss_pred HHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 667777766666653211 01111111111 11111111111011111 112221 12
Q ss_pred HHhc--------CCHHHHHHHHH--cCChHHHHHHHhc------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH
Q 013228 277 NITA--------GNSEHIQAVID--AGLIGPLVNLLQN------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP 340 (447)
Q Consensus 277 nl~~--------~~~~~~~~l~~--~~~~~~L~~~l~~------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~ 340 (447)
.++. -.++....+.. .+.+...+++|.. .++.....+.++|+......+...++.+ .|.++.
T Consensus 327 ~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v--~~Ll~~ 404 (543)
T PF05536_consen 327 YLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV--YGLLPF 404 (543)
T ss_pred HHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--HHHHHH
Confidence 2222 12333333332 2345556666652 2333667788888877665444444444 368899
Q ss_pred HHhhccCCCH----------HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH
Q 013228 341 LCDLLLCADP----------EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL 399 (447)
Q Consensus 341 L~~ll~~~~~----------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l 399 (447)
++.+.+.... +.+...+=+|..+..... .++.+...|+.+.+.+.
T Consensus 405 ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~--------------gr~~l~~~~g~~~l~~~ 459 (543)
T PF05536_consen 405 LLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE--------------GRKILLSNGGWKLLCDD 459 (543)
T ss_pred HHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH--------------HHHHHHhCCcHHHHHHH
Confidence 9988865432 344455555555543222 47778888887776653
No 91
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.54 E-value=2.1e-05 Score=72.76 Aligned_cols=188 Identities=19% Similarity=0.095 Sum_probs=101.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ 163 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (447)
+..|+..|.+.++.++..+..+|+.+-.. ...+.|+..+ .+.++.++..++.++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-----------~a~~~L~~~L-~~~~p~vR~aal~al~~r~---------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR-----------QAEPWLEPLL-AASEPPGRAIGLAALGAHR---------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCch-----------HHHHHHHHHh-cCCChHHHHHHHHHHHhhc----------
Confidence 45555666555555666666665544211 1234445555 4445555555554444311
Q ss_pred HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhH
Q 013228 164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQT 243 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~ 243 (447)
....+.+..+|++.++.++..++.+++.+-.. ..++.|...+.+.++.||..|+..++.+-. +...
T Consensus 146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~ 211 (410)
T TIGR02270 146 -HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAW 211 (410)
T ss_pred -cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHH
Confidence 11233455555555666666666665554321 123334444555555666555555544421 1000
Q ss_pred HH------------------HH----hcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Q 013228 244 QC------------------II----NCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNL 301 (447)
Q Consensus 244 ~~------------------~~----~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~ 301 (447)
.. ++ ....++.|..+++++ .++..++++++.+-. +. .++.|+..
T Consensus 212 ~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p~---------av~~L~~~ 277 (410)
T TIGR02270 212 GVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA---ATRREALRAVGLVGD--VE---------AAPWCLEA 277 (410)
T ss_pred HHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh---hhHHHHHHHHHHcCC--cc---------hHHHHHHH
Confidence 00 00 013455666666655 388888888887633 22 67778887
Q ss_pred HhcCchhHHHHHHHHHHHhcCC
Q 013228 302 LQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 302 l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
+. ++.++..|.+++..++.-
T Consensus 278 l~--d~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 278 MR--EPPWARLAGEAFSLITGM 297 (410)
T ss_pred hc--CcHHHHHHHHHHHHhhCC
Confidence 76 344999999999999874
No 92
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.50 E-value=8.9e-05 Score=68.61 Aligned_cols=221 Identities=17% Similarity=0.013 Sum_probs=152.0
Q ss_pred CChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 82 GAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 82 ~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.+++.++..+. +++.+++..+++++... +.+. .+..++..| .+.++.++..+..+|..+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVL-QAGPEGLCAGIQAALGWLGG------ 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHh-cCCCHHHHHHHHHHHhcCCc------
Confidence 35788888884 56788887766666432 2221 278888888 67788899999999975432
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
....+.|..++.+.++.++..++.++.... ....+.+..+|++.++.++..|+++++.+...
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 456788999999999999998887776522 12346788889999999999999999976632
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH----c------------------CChHHH
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID----A------------------GLIGPL 298 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~----~------------------~~~~~L 298 (447)
..++.|...+.+. ++.||..|+++++.+.. ++....+.. . ..++.|
T Consensus 178 ---------~a~~~L~~al~d~-~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L 245 (410)
T TIGR02270 178 ---------LSESTLRLYLRDS-DPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWL 245 (410)
T ss_pred ---------cchHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHH
Confidence 3455677778888 99999999999977632 222211111 1 123344
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 299 ~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
..+++. +.++..++++++.+-.. ..++.|+..+.+.. +...|-+++..+.-.
T Consensus 246 ~~ll~d--~~vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 246 RELLQA--AATRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred HHHhcC--hhhHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 444443 34777777777766542 24666666666544 777777777777653
No 93
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.48 E-value=2.9e-05 Score=66.39 Aligned_cols=240 Identities=16% Similarity=0.147 Sum_probs=149.8
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHHHHHhhcCChhhHHH
Q 013228 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQTVVNIAAGDDFQTQC 245 (447)
Q Consensus 168 l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~ 245 (447)
...|-++++.-++-.+.-|+.++.++......+.....+...-..++.+++. ....++..++.+++-++.... ..+.
T Consensus 151 leyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqd 229 (432)
T COG5231 151 LEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHH
Confidence 3444455565566678888899999887665554444444555667777765 456788899999998886443 3322
Q ss_pred HHh-cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCC-HHHHHHHHH-cCChHHHHHHHhc--CchhHHHHHHHHHHHh
Q 013228 246 IIN-CGALPYLLGLLIHNHKKSIKTDACWTISNITAGN-SEHIQAVID-AGLIGPLVNLLQN--AEFDIKNWAARAISNA 320 (447)
Q Consensus 246 ~~~-~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~-~~~~~~L~~~l~~--~~~~v~~~a~~aL~~l 320 (447)
+-+ ...+..++.+.+..-...+-+-++.++.|++... ...+....- .++.+..-.+.+. .|.+++...-..=..+
T Consensus 230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l 309 (432)
T COG5231 230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 211 1355667777765546778888999999998843 344444443 3355544444442 3555443222211111
Q ss_pred cC---------------------CC--------CHHHHHHHHHc--CChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhh
Q 013228 321 TF---------------------GG--------THEQIKYLVRE--GCIKPLCDLLLCADPE-IVTVFLKGLEKILKVGE 368 (447)
Q Consensus 321 ~~---------------------~~--------~~~~~~~l~~~--~~l~~L~~ll~~~~~~-~~~~a~~~l~~l~~~~~ 368 (447)
-. .. -..+...+... .++..|..++...++. ....|+.-+..+++..+
T Consensus 310 ~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P 389 (432)
T COG5231 310 VQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP 389 (432)
T ss_pred HhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc
Confidence 11 00 01123333332 3467777777776665 45556666777776544
Q ss_pred hhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 369 AEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
. ....+...|+-+.+.+|++|++++|+-.|...+..+...
T Consensus 390 E-------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 390 E-------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred h-------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 4 367888899999999999999999999999999887543
No 94
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=4.3e-05 Score=78.19 Aligned_cols=333 Identities=13% Similarity=0.133 Sum_probs=198.7
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CChhhHHHHHhC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS-GTSEDTKVVIDH 81 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~ 81 (447)
..+.|++++.|..++--|..+...-............+...+..+|.+.+ +-+|..|.+-|+-+-. ++...++.+
T Consensus 825 ~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~L--- 900 (1702)
T KOG0915|consen 825 TLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKSL--- 900 (1702)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHHH---
Confidence 46788888888777655555554432222222223346688888998888 7888888877765432 223333333
Q ss_pred CChHHHHHhhCC---------CCHHHH-------------HHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccch
Q 013228 82 GAVPIFVKLLAS---------PSDDIR-------------EQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKL 139 (447)
Q Consensus 82 ~~i~~L~~ll~~---------~~~~i~-------------~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 139 (447)
++.|+.-|.. .+.++. -..-.=|++|+.+-. +-+.+-..+++-+++...
T Consensus 901 --V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~w 971 (1702)
T KOG0915|consen 901 --VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATW 971 (1702)
T ss_pred --HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchh
Confidence 3334443321 111221 122234455553221 112244556666555566
Q ss_pred hHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 013228 140 SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH 219 (447)
Q Consensus 140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 219 (447)
.-+.-|++.+..++.............++|.|.+.=-+++..|+......-..+...+..... -.-..+++-|+.-+.+
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd-~y~neIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD-EYLNEILDELLVNLTS 1050 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH-HHHHHHHHHHHHhccc
Confidence 677778888888887764444445577888888888888998887655444444443333222 2334678888888999
Q ss_pred CCchhHhHHHHHHHHhhcCChhh--HHHHHhcCChHHHHHhhccCCchhHHHHH---HHHHHHHhcC-----CHHHHHHH
Q 013228 220 PSPSVLTRALQTVVNIAAGDDFQ--TQCIINCGALPYLLGLLIHNHKKSIKTDA---CWTISNITAG-----NSEHIQAV 289 (447)
Q Consensus 220 ~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~v~~~a---~~~l~nl~~~-----~~~~~~~l 289 (447)
..+++|+.+|.++..|..+.+.. .+.+- .+...+.+.+++- ...+|..| +.+++.+|.. ++..-+.+
T Consensus 1051 kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 99999999999999999887632 22222 3555666666665 66677654 5556666541 11112222
Q ss_pred HHcCChHHHHHH-HhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHH
Q 013228 290 IDAGLIGPLVNL-LQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355 (447)
Q Consensus 290 ~~~~~~~~L~~~-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~ 355 (447)
++. ++|.|++- +.+.-+++|+.++..+..++..........+. ..++.|.+....-.+.+..+
T Consensus 1128 l~~-iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1128 LDI-ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred HHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHH
Confidence 222 55555442 11567899999999999999875544333332 36778888887766655544
No 95
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=1.6e-05 Score=74.45 Aligned_cols=220 Identities=11% Similarity=0.064 Sum_probs=146.4
Q ss_pred HHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC---c--HHHHH
Q 013228 129 LLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT---N--DEIQA 203 (447)
Q Consensus 129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~---~--~~~~~ 203 (447)
+..+. .+.|..++..|+.++..|.... .....+....++.+.+.+..|+..|+..++-..... . ...+.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 44444 6777788888888887777532 222445677888999999999999877665444221 1 11111
Q ss_pred HHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH--hc-
Q 013228 204 VIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI--TA- 280 (447)
Q Consensus 204 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl--~~- 280 (447)
-....++..+...+.+.+..+|..|...|+.+-.-+++.....++..++..+-..=... +......++- ++
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSsG 350 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSSG 350 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCcccC
Confidence 12234678889999999999999999999988776665555444433333221111000 0011111111 00
Q ss_pred ----------CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH
Q 013228 281 ----------GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP 350 (447)
Q Consensus 281 ----------~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 350 (447)
...+.-..++..|..-.++.-++++-.+||..|...++.++... |..... .++.|+.++.++..
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIE 424 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHH
Confidence 01122345677888888888888888999999999999999863 333333 58999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 013228 351 EIVTVFLKGLEKILKV 366 (447)
Q Consensus 351 ~~~~~a~~~l~~l~~~ 366 (447)
.++..|+.+|..+...
T Consensus 425 ~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998865
No 96
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=8.5e-05 Score=76.16 Aligned_cols=344 Identities=16% Similarity=0.172 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC
Q 013228 13 QLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLA 92 (447)
Q Consensus 13 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 92 (447)
.+....-|+++++.-++ .+.|-.++++-++.-...-+..|+.-++.++....+..+.... ..||.|.++=-
T Consensus 938 ~isTYKELc~LASdl~q--------PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~y 1008 (1702)
T KOG0915|consen 938 KISTYKELCNLASDLGQ--------PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQY 1008 (1702)
T ss_pred cchHHHHHHHHHhhcCC--------hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhcc
Confidence 34455667777776322 2356677787777654577888999999998743332222222 46788888877
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh-HhhhHHHH
Q 013228 93 SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ-VRPALPAL 171 (447)
Q Consensus 93 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~l 171 (447)
+++..++.....+...|..++...-+... ..++..|+..+ .+....+++.+|.+|..|.+..+...... ...+-..+
T Consensus 1009 DP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~ 1086 (1702)
T KOG0915|consen 1009 DPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAA 1086 (1702)
T ss_pred CCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 89999998888888888888665544433 24667777777 67788999999999999998864333221 23333344
Q ss_pred HHhhccCChhHHHH---HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-----CCCchhHhHHHHHHHHhhcCChhhH
Q 013228 172 AQLVHSNDKEVMTD---ACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-----HPSPSVLTRALQTVVNIAAGDDFQT 243 (447)
Q Consensus 172 ~~ll~~~~~~v~~~---al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-----~~~~~v~~~a~~~l~~l~~~~~~~~ 243 (447)
++.+.+-.+.||.. ++.+++.++....+.....-...++..++.+|- ++-+++|.-++.++..++.+.+...
T Consensus 1087 fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1087 FRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhh
Confidence 44444445666665 455666555321111111111234455555542 4557899999999999998776433
Q ss_pred HHHHhcCChHHHHHhhccCCchhHH-----------HHHHHHHH-HHhcCCH--HHHHHHHH-------cCChHHHHHHH
Q 013228 244 QCIINCGALPYLLGLLIHNHKKSIK-----------TDACWTIS-NITAGNS--EHIQAVID-------AGLIGPLVNLL 302 (447)
Q Consensus 244 ~~~~~~~~l~~l~~~l~~~~~~~v~-----------~~a~~~l~-nl~~~~~--~~~~~l~~-------~~~~~~L~~~l 302 (447)
... -...++.|+.....- .+.+- .+|.-.+. +.+.++| +.+..+++ ..++|.+.+++
T Consensus 1167 kP~-~~~LIp~ll~~~s~l-E~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~ 1244 (1702)
T KOG0915|consen 1167 KPH-FPKLIPLLLNAYSEL-EPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELV 1244 (1702)
T ss_pred cch-hhHHHHHHHHHcccc-chHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 321 124566666666554 33332 22222222 2222222 22222221 23677777777
Q ss_pred hcC-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228 303 QNA-EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK 371 (447)
Q Consensus 303 ~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 371 (447)
..+ ....|.-++..+.-++.....+...+ ....+..+...+++.++.++.+...+...+++.....+
T Consensus 1245 R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq 1312 (1702)
T KOG0915|consen 1245 RGSVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQ 1312 (1702)
T ss_pred hccCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHH
Confidence 754 45666667777766665322222221 12357778888899999999999999999998765543
No 97
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.42 E-value=0.00015 Score=66.59 Aligned_cols=244 Identities=27% Similarity=0.275 Sum_probs=159.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
+.+.+.++.++..|++.+..+-.. ..++.+..++.+.+ +.+|..|+.+|+.+-. + .
T Consensus 50 ~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---------~ 105 (335)
T COG1413 50 KLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P---------E 105 (335)
T ss_pred HHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---------h
Confidence 456667778888888876655443 27899999999999 8999999998888764 2 3
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccc-----------hhHHHHHHHHHH
Q 013228 83 AVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAK-----------LSMLRIATWTLS 150 (447)
Q Consensus 83 ~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-----------~~~~~~a~~~L~ 150 (447)
.++.++.++. +.+..+|..+.++|+.+-.. ..+.+++..+..... ..++..+...+.
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 5788999888 58999999999999998532 126677777733221 123444444444
Q ss_pred HhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHH
Q 013228 151 NFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ 230 (447)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~ 230 (447)
.+-. ....+.+..++.+.+..++..+..+++.+.... ..+.+.+...+.+++..++..++.
T Consensus 175 ~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~ 235 (335)
T COG1413 175 ELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALL 235 (335)
T ss_pred HcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHH
Confidence 4332 335667777888888888888888888777543 234567777788888888888888
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK 310 (447)
Q Consensus 231 ~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~ 310 (447)
.++.+-.. .....+...+... +..++..+...+... ... .....+...+......++
T Consensus 236 ~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~~~~~~~~ 292 (335)
T COG1413 236 ALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLIDEANAVR 292 (335)
T ss_pred HhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhhcchhhHH
Confidence 77754421 2344566666666 555555554444311 110 123334444455566666
Q ss_pred HHHHHHHHHhcCC
Q 013228 311 NWAARAISNATFG 323 (447)
Q Consensus 311 ~~a~~aL~~l~~~ 323 (447)
..+..++..+...
T Consensus 293 ~~~~~~l~~~~~~ 305 (335)
T COG1413 293 LEAALALGQIGQE 305 (335)
T ss_pred HHHHHHHHhhccc
Confidence 7777666666553
No 98
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.40 E-value=4.1e-06 Score=62.02 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=100.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
+.+..|+.-.+...+.+.+++...-|.|.+. +|-+...+.+.++++.++.-+..++..+.+.++..|+|+|.+.. ..+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 4566677666655558999999999999999 78999999999999999999999999999999999999998866 577
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK 156 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (447)
.+.+.++++.++..+ +++...+...++.++..++...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 888999999999998 7777888888999999998765
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.5e-05 Score=74.67 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=162.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC------CCC
Q 013228 86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK------PKP 159 (447)
Q Consensus 86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~------~~~ 159 (447)
-+..+..+.++.+|.+|+.+|..|..... .... .....+.++ .+.+..++..|...++-..... ...
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 36677777888888888888888875332 2122 245667777 6777888888755554444322 122
Q ss_pred ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC-
Q 013228 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG- 238 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~- 238 (447)
.......++..+.+.+++....|+..|..+|+.+-.-+++.....++..++..+-..-.. .-+...+..=+..+.+
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a---hkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA---HKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc---ccchHHHHhcCCcccCc
Confidence 222346778888999999999999999999998876666555555544444422211100 0011111111111111
Q ss_pred ----------ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchh
Q 013228 239 ----------DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD 308 (447)
Q Consensus 239 ----------~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~ 308 (447)
.+.....++.+|.-..++.-+.+. -.+||..|+..++.|+..+|..... .+..|+++++++...
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence 123345578889999999999888 8999999999999999876654332 567799999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 013228 309 IKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360 (447)
Q Consensus 309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l 360 (447)
||..|+.+|..++.... ++...++.+...|.+..+++++..-..|
T Consensus 426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998876421 2223466666667777766666544333
No 100
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.34 E-value=8.5e-05 Score=67.94 Aligned_cols=339 Identities=13% Similarity=0.100 Sum_probs=205.0
Q ss_pred HHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CC
Q 013228 18 THIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PS 95 (447)
Q Consensus 18 ~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~ 95 (447)
..|..+.... +.....+.-....+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|.. .+
T Consensus 5 N~Lv~l~~~~-p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 5 NDLVDLLKRH-PTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKN 81 (371)
T ss_pred HHHHHHHHhC-chhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCC
Confidence 3455555542 322333333335566665666666 7999999999999998 67888888888877777776665 35
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh
Q 013228 96 DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV 175 (447)
Q Consensus 96 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll 175 (447)
..=|++|++.+..+..-....+. ...+++..++... .+.+...+..|+.++..++... +......|+++.+.+.+
T Consensus 82 ~~ER~QALkliR~~l~~~~~~~~--~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGPKE--IPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRAL 156 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCccc--CCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHH
Confidence 66788999999988754222111 2456788888888 5677789999999999999763 44455688999999988
Q ss_pred ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-------Cc--hhHhHHHHHHHHhhcCChhhHHHH
Q 013228 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP-------SP--SVLTRALQTVVNIAAGDDFQTQCI 246 (447)
Q Consensus 176 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-------~~--~v~~~a~~~l~~l~~~~~~~~~~~ 246 (447)
-++..++....+.++..+...+..+ +.+...--++.++.-..+. +. .....+..++..+.+.=+......
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLDSPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HhccHhHHHHHHHHHHHHhCCcchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 8776668888999999999776554 3333222234443333221 12 233445555555544332221111
Q ss_pred Hh-cCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHH------HHHcCChHHHHHHH---hcCchhHHHHHHH
Q 013228 247 IN-CGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQA------VIDAGLIGPLVNLL---QNAEFDIKNWAAR 315 (447)
Q Consensus 247 ~~-~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~------l~~~~~~~~L~~~l---~~~~~~v~~~a~~ 315 (447)
.+ ..++..++..|..+ ..++|....-.+..+..- .+.-... ....|-+..-.++- ...........-
T Consensus 236 ~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~- 313 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSS- 313 (371)
T ss_pred cCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccc-
Confidence 12 25678899999998 888999988888887752 2211111 11111110000110 000000000000
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhh
Q 013228 316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~ 367 (447)
-=.++..+.-.-....+.+.|.++.|+++..+. ++.+...|.-.|..++...
T Consensus 314 ~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 314 KRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred ccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 000111100111234567899999999999887 7888888888888887643
No 101
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.33 E-value=1.3e-06 Score=52.02 Aligned_cols=41 Identities=39% Similarity=0.767 Sum_probs=38.2
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 013228 71 TSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA 111 (447)
Q Consensus 71 ~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~ 111 (447)
+++++..+++.|+++.|+.+|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.32 E-value=0.0002 Score=65.77 Aligned_cols=249 Identities=23% Similarity=0.292 Sum_probs=174.3
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
..++.+.+++.+++ ..++..+++.++.+.. ...++.+..++.+.++.+|..++.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGDP------ 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh------
Confidence 47889999999997 8999999999777654 14689999999999999999999988887321
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCCh------------hHHHHH
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK------------EVMTDA 186 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~------------~v~~~a 186 (447)
..++.++..+..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 247889999955788999999999999886542 35566777766552 234444
Q ss_pred HHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh
Q 013228 187 CRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS 266 (447)
Q Consensus 187 l~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 266 (447)
...+..+- +....+.+...+.+....+|..+...++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 44444332 1234677888888888899999999998887655 23456788888888 899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc
Q 013228 267 IKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL 346 (447)
Q Consensus 267 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 346 (447)
+|..++..++.+-.. + ..+.+...+...+..++..+..++...-. . .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~--~---------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE--E---------AVDALAKALEDEDVILALLAAAALGALDL---A---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc--h---------hHHHHHHHHhccchHHHHHHHHHhcccCc---h---------hhHHHHHHHhh
Confidence 999998888887332 2 45566777777777777666665551111 0 12334445555
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 013228 347 CADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 347 ~~~~~~~~~a~~~l~~l~ 364 (447)
+....++..+...+..+.
T Consensus 286 ~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 286 DEANAVRLEAALALGQIG 303 (335)
T ss_pred cchhhHHHHHHHHHHhhc
Confidence 555666666555555544
No 103
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.0018 Score=56.11 Aligned_cols=319 Identities=14% Similarity=0.145 Sum_probs=198.3
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--h--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSE--D--TKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA 114 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~--~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~ 114 (447)
+..|.|-.-|..++ ..++..++..++.+..+.+. . ...+++.|+++.++..+...+.++...+...+..++....
T Consensus 82 nlmpdLQrGLiadd-asVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 82 NLMPDLQRGLIADD-ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhHHHHhcccCCc-chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 35566666667777 79999999999988875442 2 2345688999999999999999999999999999997765
Q ss_pred hHHHHHHhcCCHHHH--HHHhccccchhHHHHHHHHHHHhcCCCCCCChh-hHhhhHHHHHHhhcc-CChhHHHHHHHHH
Q 013228 115 RCRDLVLSEEALIPL--LTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD-QVRPALPALAQLVHS-NDKEVMTDACRAL 190 (447)
Q Consensus 115 ~~~~~~~~~~~l~~l--~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~l~~ll~~-~~~~v~~~al~~l 190 (447)
.. +.+.+.+....+ .++-.+. +.-++......+..+.+-++..... ..+|.+..|..=++. .|.-++..++...
T Consensus 161 al-eaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 161 AL-EAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HH-HHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 43 344444443332 2222122 2234455666666666555333322 236777776666654 6788888899988
Q ss_pred HHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHHHHHhhcC------Chh-hHHHHHhcCChHHHHHhhcc
Q 013228 191 FYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQTVVNIAAG------DDF-QTQCIINCGALPYLLGLLIH 261 (447)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~------~~~-~~~~~~~~~~l~~l~~~l~~ 261 (447)
..++..... .+.+.+.|+++.+..++.. .++.-+..++...+.+... .++ .++.++ -+++...+++..
T Consensus 239 teLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEm 315 (524)
T KOG4413|consen 239 TELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEM 315 (524)
T ss_pred HHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhc
Confidence 888854333 3567788999999999854 3344444455444444321 111 111111 234555667777
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC--hHHHH-HHHhcCchhHHHHHHHHHHHhcCCC--CHH---------
Q 013228 262 NHKKSIKTDACWTISNITAGNSEHIQAVIDAGL--IGPLV-NLLQNAEFDIKNWAARAISNATFGG--THE--------- 327 (447)
Q Consensus 262 ~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~--~~~L~-~~l~~~~~~v~~~a~~aL~~l~~~~--~~~--------- 327 (447)
. ++.....|.-+++-+.+.. +..+.+...|- ...++ +........-+..+..+|.+++..- .++
T Consensus 316 n-DpdaieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaee 393 (524)
T KOG4413|consen 316 N-DPDAIEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEE 393 (524)
T ss_pred C-CchHHHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHH
Confidence 7 8999999999999997754 44555655543 23332 2333233334456677777776421 111
Q ss_pred HHHHHH-----H---cCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228 328 QIKYLV-----R---EGCIKPLCDLLLCADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 328 ~~~~l~-----~---~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~ 365 (447)
....++ + ...++.+...+..+-+++..++++.+..+..
T Consensus 394 rlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 394 RLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 111111 1 1345666777788889999999988888764
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.30 E-value=0.00034 Score=66.15 Aligned_cols=255 Identities=15% Similarity=0.110 Sum_probs=170.3
Q ss_pred CCchhhhhccCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-----
Q 013228 29 SAPTEEVIPFGVVPRFVEFL---------MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP----- 94 (447)
Q Consensus 29 ~~~~~~~~~~~~v~~L~~ll---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----- 94 (447)
+.....+.....+..|.++- ....++.+..+|++||+|+...++..|..+.+.|..+.++..|+..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 44556666666677777665 2233489999999999999999999999999999999999999875
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHh-cCCHHHHHHHhcc---------c-------cchhHHHHHHHHHHHhcCCCC
Q 013228 95 SDDIREQAVCALGNVAADSARCRDLVLS-EEALIPLLTQLNK---------H-------AKLSMLRIATWTLSNFCAGKP 157 (447)
Q Consensus 95 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~---------~-------~~~~~~~~a~~~L~~l~~~~~ 157 (447)
+.++.-...+.|.-++...+..+..+.+ .+++..++..+.. . .+......++..+.|++...+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~ 171 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP 171 (446)
T ss_pred ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence 7888889999998888777767655554 4677777766631 0 134456668889999987774
Q ss_pred CCChhhH----hhhHHHHHHhh---c--cCChhHHHHHHHHHHHhccCCcHH-------HH----HHHHhCcHHHHHHhc
Q 013228 158 KPIFDQV----RPALPALAQLV---H--SNDKEVMTDACRALFYLSEGTNDE-------IQ----AVIEAGVCPRLVELL 217 (447)
Q Consensus 158 ~~~~~~~----~~~l~~l~~ll---~--~~~~~v~~~al~~l~~l~~~~~~~-------~~----~~~~~~~~~~L~~lL 217 (447)
....... ..+++.+..++ . .+......+++.+|.|+--..... .. .......+..|+.+|
T Consensus 172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L 251 (446)
T PF10165_consen 172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL 251 (446)
T ss_pred cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence 4433222 44444444442 1 123566777888888773211111 00 001123455666665
Q ss_pred CC-----C---CchhHhHHHHHHHHhhcCChhhHHHHHh----------------cCChHHHHHhhccCCchhHHHHHHH
Q 013228 218 GH-----P---SPSVLTRALQTVVNIAAGDDFQTQCIIN----------------CGALPYLLGLLIHNHKKSIKTDACW 273 (447)
Q Consensus 218 ~~-----~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~l~~l~~~l~~~~~~~v~~~a~~ 273 (447)
.. . -.......+.+|.+++..+...++.+.. ..+-..|++++.++ .+.+|..++.
T Consensus 252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae 330 (446)
T PF10165_consen 252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE 330 (446)
T ss_pred HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence 32 1 1356677788888888876555444432 24567889999998 6999999999
Q ss_pred HHHHHhcCCHH
Q 013228 274 TISNITAGNSE 284 (447)
Q Consensus 274 ~l~nl~~~~~~ 284 (447)
.+..+|..+..
T Consensus 331 llf~Lc~~d~~ 341 (446)
T PF10165_consen 331 LLFVLCKEDAS 341 (446)
T ss_pred HHHHHHhhhHH
Confidence 99888765443
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.30 E-value=2.1e-05 Score=78.65 Aligned_cols=258 Identities=16% Similarity=0.144 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CChhhHHHHHhCCChHH
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS---GTSEDTKVVIDHGAVPI 86 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~ 86 (447)
.+.++.|+..|..++..... ...-..++|.++.++.++. .+||..|+.+|..+.. .-+..-..+...-++|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 56778888888888765322 1222348999999999999 8999999999888754 22222333444456677
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHH---Hh------------------------cCCHHHHHHHhccccc
Q 013228 87 FVKLLAS-PSDDIREQAVCALGNVAADSARCRDLV---LS------------------------EEALIPLLTQLNKHAK 138 (447)
Q Consensus 87 L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~---~~------------------------~~~l~~l~~~l~~~~~ 138 (447)
|-.++.+ ....+|..-+..|+.|+...-.+.+.. .. ...+...+.-|..+++
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 7777777 445566555666666652111000000 00 0012223333325556
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC
Q 013228 139 LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG 218 (447)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 218 (447)
+-+++..+..+.-||... .+.....-+++.|+.+|++.|+.+|..-...|..++..-..+ -++..++|.|.+-|.
T Consensus 592 ~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLT 666 (1431)
T ss_pred hHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhcc
Confidence 667777777777777543 111122457888999999999998887777776665432221 235577899999999
Q ss_pred CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 219 HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 219 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
+.++.|...|+.++..|+...--....+. .+++....+|.++ +..+|..++..+...+.
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 99999999999999999875543333333 3677788889999 99999999999887765
No 106
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.00058 Score=67.84 Aligned_cols=291 Identities=13% Similarity=0.184 Sum_probs=184.2
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228 7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI 86 (447)
Q Consensus 7 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 86 (447)
..++.++.-|+..+..+.+. .+....+...|.+..|+++|.+.. ..|..++.+|..+++ +++....-.+.|++..
T Consensus 1783 ~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~P--S~R~~vL~vLYAL~S-~~~i~keA~~hg~l~y 1857 (2235)
T KOG1789|consen 1783 RKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQP--SMRARVLDVLYALSS-NGQIGKEALEHGGLMY 1857 (2235)
T ss_pred cCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcCh--HHHHHHHHHHHHHhc-CcHHHHHHHhcCchhh
Confidence 35677888888888777665 777888999999999999987665 889999999999999 7788888888898888
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHhhcCC---hhHHHHHHh----------cCCHHHHHHHhcc-ccchh------HHHHH
Q 013228 87 FVKLLA-SPSDDIREQAVCALGNVAADS---ARCRDLVLS----------EEALIPLLTQLNK-HAKLS------MLRIA 145 (447)
Q Consensus 87 L~~ll~-~~~~~i~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~l~~l~~~l~~-~~~~~------~~~~a 145 (447)
+..++- +.++..|.+++..++.+..+. |..+-.+++ .+.-+..+..+.. +.+++ .+...
T Consensus 1858 il~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kv 1937 (2235)
T KOG1789|consen 1858 ILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKV 1937 (2235)
T ss_pred hhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHH
Confidence 887664 467899999999999987543 111100000 0112333333321 11111 12222
Q ss_pred HHHHHHhc----CCC---C--------------------------------------CCChhhHhhhHHHHHHhhccCCh
Q 013228 146 TWTLSNFC----AGK---P--------------------------------------KPIFDQVRPALPALAQLVHSNDK 180 (447)
Q Consensus 146 ~~~L~~l~----~~~---~--------------------------------------~~~~~~~~~~l~~l~~ll~~~~~ 180 (447)
...+..+. +.. + ........+.+..+..++..+++
T Consensus 1938 S~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~p 2017 (2235)
T KOG1789|consen 1938 SGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTP 2017 (2235)
T ss_pred HHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCc
Confidence 11221111 000 0 01111224445555555554332
Q ss_pred --hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh
Q 013228 181 --EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL 258 (447)
Q Consensus 181 --~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~ 258 (447)
......-.++..+....+...+.+-..|.+|.++..+...+..+-..|++.|..++... ...+.+.....+..++..
T Consensus 2018 eqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~ 2096 (2235)
T KOG1789|consen 2018 EQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKS 2096 (2235)
T ss_pred ccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHH
Confidence 12222223334444444544555556699999999998877777789999999998744 455666666677778887
Q ss_pred hccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcC
Q 013228 259 LIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNA 305 (447)
Q Consensus 259 l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~ 305 (447)
++.. .....-|+.+|..+.. ...+.....++.|.+|.|+.+|...
T Consensus 2097 mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2097 MKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 7654 3334477788877765 3445566677899999999999853
No 107
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.28 E-value=0.00012 Score=62.87 Aligned_cols=234 Identities=15% Similarity=0.111 Sum_probs=150.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH-hcCCHHHHHHHhcccc-chhHHHHHHHHHHHhcCCCCCC-Chhh
Q 013228 87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVL-SEEALIPLLTQLNKHA-KLSMLRIATWTLSNFCAGKPKP-IFDQ 163 (447)
Q Consensus 87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~-~~~~ 163 (447)
|-.+++.-++-.+..|+.++.++..... .|.... +...-..++..+.++- +.+++.+.+.+++.++...... ....
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K 232 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3344445566688889999999987655 455443 4445667777775544 4788999999999999875222 1122
Q ss_pred HhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhcCC---CCchhHhHHHHHHHHhhcC
Q 013228 164 VRPALPALAQLVHSN-DKEVMTDACRALFYLSEGT-NDEIQAVIEAGVCPRLVELLGH---PSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~---~~~~v~~~a~~~l~~l~~~ 238 (447)
....+..++.+.+.. .++|..-++..+.|++... ...+..+.-.|-+..-++.|.. .+++++...-++=+.+...
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 245556666666644 5778888999999999733 2333334334434444454422 3444433322222222111
Q ss_pred ---------------------Ch---------hhHHHHHh--cCChHHHHHhhccCCchh-HHHHHHHHHHHHhcCCHHH
Q 013228 239 ---------------------DD---------FQTQCIIN--CGALPYLLGLLIHNHKKS-IKTDACWTISNITAGNSEH 285 (447)
Q Consensus 239 ---------------------~~---------~~~~~~~~--~~~l~~l~~~l~~~~~~~-v~~~a~~~l~nl~~~~~~~ 285 (447)
+| ...+.+.+ ..++..|.+++++. .+. ...-||.-+..+.+..|+.
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~ 391 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEI 391 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchH
Confidence 00 11222222 24577888888877 443 4556777888888888999
Q ss_pred HHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 286 ~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
...+.+.|+-..++++++++|++++.+|..++..+..
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876643
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.28 E-value=8.6e-05 Score=74.41 Aligned_cols=296 Identities=15% Similarity=0.106 Sum_probs=188.7
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC----CC
Q 013228 84 VPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK----PK 158 (447)
Q Consensus 84 i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~~ 158 (447)
+..+...+++ .....+..|+..|..++..... ...-..++|.++.++ .++...++..|+.+|..+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3555555555 4677888899999888854321 111224688888888 7888899999888887765332 34
Q ss_pred CChhhHhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 159 PIFDQVRPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
.......-++|.|-.++.+ ....++..-+.+|..++.. .-.+.+.+.-......+++++.+.. --.
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t----A~rFle~~q~~~~~g~~n~~nset~---------~~~ 566 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT----AYRFLELTQELRQAGMLNDPNSETA---------PEQ 566 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH----HHHHHHHHHHHHhcccccCcccccc---------ccc
Confidence 4444557889999999988 5566776667777777632 1223332222222333444433200 000
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228 238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317 (447)
Q Consensus 238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL 317 (447)
..+.....+.+ .+-.....++.++ ++-||+..+..|.-||..... .--+.-+++.|+..|+..|+.+|..-...|
T Consensus 567 ~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 567 NYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSI 641 (1431)
T ss_pred ccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence 11122232332 3445667777777 788998888888887752101 011234789999999999999998877777
Q ss_pred HHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHH
Q 013228 318 SNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIE 397 (447)
Q Consensus 318 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 397 (447)
.-++..-.... ++.+.++.|.+-|.++++-+...|++++..|++.+--.+. .-...++.+.
T Consensus 642 ~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~---------------~v~~i~~~v~ 702 (1431)
T KOG1240|consen 642 VGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP---------------AVKDILQDVL 702 (1431)
T ss_pred cceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH---------------HHHHHHHhhh
Confidence 65554322111 2345688899999999999999999999999987654331 1122345566
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcC
Q 013228 398 NLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 398 ~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
-++-|+|.=|++.+..+|.....
T Consensus 703 PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 703 PLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred hheeCchHHHHHHHHHHHHHHHh
Confidence 67889999999999888876543
No 109
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.0014 Score=61.06 Aligned_cols=350 Identities=12% Similarity=0.129 Sum_probs=187.7
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED---YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV 84 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 84 (447)
+++-.|.+|+..|..+-.+. .+ +.-.+++.+..+. +.-.....+++...+...+++.+.++.
T Consensus 202 ~~~isqYHalGlLyq~kr~d------km----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r----- 266 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTD------KM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR----- 266 (898)
T ss_pred CChHHHHHHHHHHHHHhccc------HH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----
Confidence 34556666666665554331 11 2334444444333 122223334555556655665555443
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV 164 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (447)
|.|-..+.+.-+.+.-.+++++..++...-. ..+.+ ..+..|-.+| +++....+-.|..+|..++...|...
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv---- 338 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV---- 338 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee----
Confidence 5555666666677888888888887744311 11111 1244444455 66777788889999999987664432
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 244 (447)
.-+-+.+-.++.+.+..+...|+..|..-. .++.+..+ +..+..++.+-++..+.-+..++..|+-.-+....
T Consensus 339 ~vcN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 339 SVCNKEVESLISDENRTISTYAITTLLKTG--TEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred eecChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 223344556677777777777776664432 33333333 34444455554455555555555555544443333
Q ss_pred HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 245 ~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~ 324 (447)
. .+..|...|......+.++.++-+++.+....|+..+. ++..|+..+.+. +.-+-+.+.|+-+...+
T Consensus 412 s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc--ey~~I~vrIL~iLG~Eg 479 (898)
T COG5240 412 S-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC--EYHQITVRILGILGREG 479 (898)
T ss_pred H-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc--chhHHHHHHHHHhcccC
Confidence 2 34456665554436777888888888777766554433 344566666532 22234445555444432
Q ss_pred CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCC
Q 013228 325 THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDN 404 (447)
Q Consensus 325 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~ 404 (447)
...... ...+..+.+=+--++.-++.+|+.+|.++.-..+.- +........|...+++.+
T Consensus 480 P~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----------------~~~~sv~~~lkRclnD~D 539 (898)
T COG5240 480 PRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----------------VSPQSVENALKRCLNDQD 539 (898)
T ss_pred CCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----------------ccHHHHHHHHHHHhhccc
Confidence 110000 012333333333345567777777777765432221 111112244556677788
Q ss_pred HHHHHHHHHHHHHhc
Q 013228 405 DEIHEKSVKILETYW 419 (447)
Q Consensus 405 ~~v~~~a~~~l~~~~ 419 (447)
++|+++|.-.++.+-
T Consensus 540 deVRdrAsf~l~~~~ 554 (898)
T COG5240 540 DEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHHhhh
Confidence 888888877777653
No 110
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0022 Score=61.18 Aligned_cols=337 Identities=15% Similarity=0.133 Sum_probs=192.6
Q ss_pred HHHHHhhcCCCCH--HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228 42 PRFVEFLMREDYP--QLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119 (447)
Q Consensus 42 ~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 119 (447)
..-+++|+++..+ .+-...+.+| ...+.+..+.+ +..+..=|.+.++....-|+.+++|+.+.. +++.
T Consensus 77 mEaV~LLss~kysEKqIGYl~is~L---~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~re--~~ea 146 (938)
T KOG1077|consen 77 MEAVNLLSSNKYSEKQIGYLFISLL---LNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSRE--MAEA 146 (938)
T ss_pred HHHHHHhhcCCccHHHHhHHHHHHH---HhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHHH
Confidence 3445667666421 2223333333 33333333322 344566666788999999999999986432 3333
Q ss_pred HHhcCCHHHHHHHhccccc-hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228 120 VLSEEALIPLLTQLNKHAK-LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 120 ~~~~~~l~~l~~~l~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~ 198 (447)
+. ..+-.+|.+.++ .-++..++.++..|.+..|+. ....+-...++++|.+.+-.+...+...+-.++...+
T Consensus 147 ~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl--~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 147 FA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL--VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred hh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc--cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 32 223355544443 456777888998888875433 2335667889999999998888888888888886655
Q ss_pred HHHHHHHHhCcHHHHHHhcCC-------------CCchhHhHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccC-C
Q 013228 199 DEIQAVIEAGVCPRLVELLGH-------------PSPSVLTRALQTVVNIAAGDD-FQTQCIINCGALPYLLGLLIHN-H 263 (447)
Q Consensus 199 ~~~~~~~~~~~~~~L~~lL~~-------------~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~-~ 263 (447)
+.....+. -.+..|..+... +.+=.+...++.|.++-...+ ..+..+.+ +++.++...+.+ .
T Consensus 220 ~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~ 296 (938)
T KOG1077|consen 220 ESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPK 296 (938)
T ss_pred HHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCcc
Confidence 43321111 112222222211 344566777888877743222 22222222 333444333311 1
Q ss_pred chh-----HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh
Q 013228 264 KKS-----IKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCI 338 (447)
Q Consensus 264 ~~~-----v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l 338 (447)
... .+....+-.-+++.+....-+.+.+ .+..|..++.+....+|.-|...++.++.... ....+ ... .
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~dav-K~h-~ 370 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAV-KKH-Q 370 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHH-HHH-H
Confidence 112 2223333334444421111112222 57778889999999999999999999988532 22222 222 7
Q ss_pred HHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013228 339 KPLCDLLL-CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET 417 (447)
Q Consensus 339 ~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 417 (447)
+.++..|+ ..|..++..+++.|+.+++.+. ++.|. .+.++.|.....+--+++.-+++-+-++
T Consensus 371 d~Ii~sLkterDvSirrravDLLY~mcD~~N---------------ak~IV-~elLqYL~tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 371 DTIINSLKTERDVSIRRRAVDLLYAMCDVSN---------------AKQIV-AELLQYLETADYSIREEIVLKVAILAEK 434 (938)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHhchhh---------------HHHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 78888888 7889999999999999987543 23333 4445666554444456666666656666
Q ss_pred hcC
Q 013228 418 YWC 420 (447)
Q Consensus 418 ~~~ 420 (447)
|..
T Consensus 435 yAt 437 (938)
T KOG1077|consen 435 YAT 437 (938)
T ss_pred hcC
Confidence 544
No 111
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.25 E-value=3.8e-05 Score=66.19 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=118.7
Q ss_pred cCCCHHHHHHHHHHHHHHHccC-CCCchhhhhc--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 6 WSDDNNMQLEATTHIRKLLSNA-RSAPTEEVIP--FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 6 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
.+.|++.+..|+..|..++.+. .......+.+ ..++..+...+++.. ..+...|+.++..++..-........ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 5688999999999999999874 1222333222 145667777777777 78999999999998874333333332 24
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CCh
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PIF 161 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 161 (447)
+++.|+..+.++...++..|..+|..++...+.... .+..++.....+.++.++..++..+..+....+. ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 788999999998999999999999999976551111 1133344343788899999999888888766541 111
Q ss_pred h----hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH
Q 013228 162 D----QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ 202 (447)
Q Consensus 162 ~----~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~ 202 (447)
. ....+.+.+..++.++++++|..+-.++..+....++...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 1 1256888899999999999999999999888755444433
No 112
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.0021 Score=64.34 Aligned_cols=231 Identities=12% Similarity=0.152 Sum_probs=151.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
++++.|+..+++.+..+|-.|+..++.++...|. .. ...++..++.++....+...-..++.+|..++... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 5677788888889999999999999999977662 12 22357778887755556677778999999999876 3333
Q ss_pred hhHhhhHHHHHHhhcc--------CChhHHHHHHHHHHHhccCCcH-HHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228 162 DQVRPALPALAQLVHS--------NDKEVMTDACRALFYLSEGTND-EIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV 232 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~--------~~~~v~~~al~~l~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 232 (447)
.....++|.+++.+.- ....||..|+.+++.++..... ..+.+++.=.-..+...+-+++-..|+.|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 4457788888877753 2367899998888888854332 223333322223344455677777888877776
Q ss_pred HHhhcC--C-hhhHH----------------------HHHh-cCChHHHHHh-----hccCCchhHHHHHHHHHHHHhcC
Q 013228 233 VNIAAG--D-DFQTQ----------------------CIIN-CGALPYLLGL-----LIHNHKKSIKTDACWTISNITAG 281 (447)
Q Consensus 233 ~~l~~~--~-~~~~~----------------------~~~~-~~~l~~l~~~-----l~~~~~~~v~~~a~~~l~nl~~~ 281 (447)
...... + +.... .+.+ .|....+++- +.+- +..+|..++++|.+++..
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence 654321 0 00000 0111 1223333332 4556 899999999999998765
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 282 ~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
.++ ......++.++....+.+...|.-+..+.+.++.
T Consensus 575 ~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 575 EPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred hHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 554 2345578889888888888887766666665554
No 113
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.19 E-value=0.0062 Score=57.52 Aligned_cols=339 Identities=14% Similarity=0.139 Sum_probs=193.6
Q ss_pred cccCCCH---HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-----
Q 013228 4 GVWSDDN---NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT----- 75 (447)
Q Consensus 4 ~l~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~----- 75 (447)
.|.+.+. ......+.+|..++.. ..-.+.+.. .++..+....+.+.+.+....++.++..+.....+..
T Consensus 7 ~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~ 83 (415)
T PF12460_consen 7 LLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDN 83 (415)
T ss_pred hCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchH
Confidence 3444443 5667777888888765 222232222 4555555555544446777788888888765332222
Q ss_pred HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhcCChhH-HHHHHhcCCHHHHHHHhc----------cc-
Q 013228 76 KVVIDHGAVPIFVKLLAS-----P--SDDIREQAVCALGNVAADSARC-RDLVLSEEALIPLLTQLN----------KH- 136 (447)
Q Consensus 76 ~~~~~~~~i~~L~~ll~~-----~--~~~i~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~l~~~l~----------~~- 136 (447)
....+..+++.+..+.-. . ++.+...+...+..+...-+.- ++.+ +..+..... ..
T Consensus 84 ~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~~~~~ 158 (415)
T PF12460_consen 84 SWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQPSSS 158 (415)
T ss_pred HHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCCcccc
Confidence 333444477777776532 1 2566666666666666443322 2222 333333332 01
Q ss_pred ----cchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccC--CcHHHHHHHHhCc
Q 013228 137 ----AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-SNDKEVMTDACRALFYLSEG--TNDEIQAVIEAGV 209 (447)
Q Consensus 137 ----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~~--~~~~~~~~~~~~~ 209 (447)
.......-...++..+-. ..........+..++.+.. ..++..+..++.+++-+... .++... .+
T Consensus 159 ~~~~~~~~~~~l~~~il~~l~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----~~ 230 (415)
T PF12460_consen 159 TISEQQSRLVILFSAILCSLRK---DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----EF 230 (415)
T ss_pred ccccccccHHHHHHHHHHcCCc---ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----HH
Confidence 011122222333333332 2332234557777777754 44688888888888888744 222122 23
Q ss_pred HHHHHHhc-CCCCchhHhHHHHHHHHhh-----cCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228 210 CPRLVELL-GHPSPSVLTRALQTVVNIA-----AGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS 283 (447)
Q Consensus 210 ~~~L~~lL-~~~~~~v~~~a~~~l~~l~-----~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~ 283 (447)
+..+...+ .......+..++..+..++ ++++... ..+..++.++.+ +++...++..+.-+....+
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~ 301 (415)
T PF12460_consen 231 LDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS---PELGQQAAKAFGILLSDSD 301 (415)
T ss_pred HHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcH
Confidence 33343333 3334444555544443332 3443222 245578888866 4677888888887766522
Q ss_pred H--------HHHHHHHcC----ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHH
Q 013228 284 E--------HIQAVIDAG----LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPE 351 (447)
Q Consensus 284 ~--------~~~~l~~~~----~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 351 (447)
+ +++.+.+.. ++|.|++.....+...+.....||..+..+-.......-. ..+++.|++.|+.++++
T Consensus 302 ~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~~~~~~ 380 (415)
T PF12460_consen 302 DVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLSLPDAD 380 (415)
T ss_pred HhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhCCCCHH
Confidence 2 333344433 5777777777666668899999999999875443322211 24788999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 013228 352 IVTVFLKGLEKILKVGE 368 (447)
Q Consensus 352 ~~~~a~~~l~~l~~~~~ 368 (447)
++..++.+|..++...+
T Consensus 381 v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 381 VLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 99999999999997653
No 114
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.18 E-value=3.4e-06 Score=50.15 Aligned_cols=41 Identities=37% Similarity=0.520 Sum_probs=37.9
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 282 ~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
++++++.+++.|++|.|+.++.++++++++.|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999863
No 115
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.18 E-value=3.4e-05 Score=66.52 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=119.3
Q ss_pred cCCCCchhHhHHHHHHHHhhcCC--hhhHHHHHh--cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 013228 217 LGHPSPSVLTRALQTVVNIAAGD--DFQTQCIIN--CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDA 292 (447)
Q Consensus 217 L~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~--~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~ 292 (447)
-.+.+|..|..++..|..++.++ ......+.+ ..++..+...+.+. ...+...|+.++..++...........+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 36688999999999999998766 222222222 15667777888777 78899999999999987433334444443
Q ss_pred CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 013228 293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN 372 (447)
Q Consensus 293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 372 (447)
++|.|+..+.++...++..|..+|..+..... ....+ ....+.....+.++.++..++..+..++........
T Consensus 95 -~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 95 -LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp -HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred -HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 78999999998889999999999999998754 11111 156677788999999999999999999876551110
Q ss_pred hhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 373 MDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
. +.....-....+.+.....+++++|++.|..++..|+.
T Consensus 168 ~---------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 168 V---------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G---------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred h---------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 0 01111113346788889999999999999999988764
No 116
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.0004 Score=64.49 Aligned_cols=285 Identities=14% Similarity=0.055 Sum_probs=168.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 120 (447)
.|.|-..+++.- +.+..++++.++.++..+ ....+++ ..+..|-.+|.++....|-.|+++|..|+...|.. +
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v 338 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V 338 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e
Confidence 344444455555 689999999999988643 1222332 24677888888999999999999999999766631 1
Q ss_pred HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc---CChhHHHHHHHHHHHhccCC
Q 013228 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS---NDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 121 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~---~~~~v~~~al~~l~~l~~~~ 197 (447)
... =+.+-.++ ++.+..+-.+|... |........ +..++..+..++.+ +-.-+...+++.|+...
T Consensus 339 ~vc--N~evEsLI-sd~Nr~IstyAITt---LLKTGt~e~---idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F--- 406 (898)
T COG5240 339 SVC--NKEVESLI-SDENRTISTYAITT---LLKTGTEET---IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF--- 406 (898)
T ss_pred eec--ChhHHHHh-hcccccchHHHHHH---HHHcCchhh---HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---
Confidence 111 11222222 45454444444443 333322222 23334444444443 33444555555555544
Q ss_pred cHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228 198 NDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS 276 (447)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~ 276 (447)
+.... ..+..|...| +.+..+.+..+..++..+....|+..+. +++.|..++.+. +.-+-++.+|+
T Consensus 407 p~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc---ey~~I~vrIL~ 473 (898)
T COG5240 407 PSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC---EYHQITVRILG 473 (898)
T ss_pred cHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc---chhHHHHHHHH
Confidence 22222 2344455544 3456778888899999888877765553 445677777655 34445555666
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHH
Q 013228 277 NITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVF 356 (447)
Q Consensus 277 nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a 356 (447)
-+....|.... -...+..+.+-+--++..+|..|..||..++.+.+... ....+...|-+++++.|.+++..|
T Consensus 474 iLG~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrA 546 (898)
T COG5240 474 ILGREGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRA 546 (898)
T ss_pred HhcccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHH
Confidence 55542221000 01133444444445678899999999999887653322 222356678889999999999998
Q ss_pred HHHHHHHH
Q 013228 357 LKGLEKIL 364 (447)
Q Consensus 357 ~~~l~~l~ 364 (447)
.-.+.++=
T Consensus 547 sf~l~~~~ 554 (898)
T COG5240 547 SFLLRNMR 554 (898)
T ss_pred HHHHHhhh
Confidence 88887764
No 117
>PF05536 Neurochondrin: Neurochondrin
Probab=98.12 E-value=0.00063 Score=65.78 Aligned_cols=237 Identities=17% Similarity=0.167 Sum_probs=159.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH---HHHHHhcCCHHHHHHHhccc------cchhHHHHHHHHHHHhc
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARC---RDLVLSEEALIPLLTQLNKH------AKLSMLRIATWTLSNFC 153 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~------~~~~~~~~a~~~L~~l~ 153 (447)
.++..+.+|++.+++-|-.++..+.+++...+.. ++.+.+.=+...+-++|.+. +....+.-++.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4667788898888888888888888988665532 33455555567777777542 23456677999999999
Q ss_pred CCCCCCChhhHhhhHHHHHHhhccCCh-hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228 154 AGKPKPIFDQVRPALPALAQLVHSNDK-EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV 232 (447)
Q Consensus 154 ~~~~~~~~~~~~~~l~~l~~ll~~~~~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 232 (447)
..+.........+-+|.++..+.+.+. .+...++.+|..++..+.. .+.+++.|.++.|.+.+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 866444445567889999999987776 9999999999999965555 4679999999999999977 666778888888
Q ss_pred HHhhcCChhhHHH---HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHH-HHHH----HHcCChHHHHHHHhc
Q 013228 233 VNIAAGDDFQTQC---IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH-IQAV----IDAGLIGPLVNLLQN 304 (447)
Q Consensus 233 ~~l~~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~l----~~~~~~~~L~~~l~~ 304 (447)
.+++......... -.-..++..+...+... ....+-+++..|+.+....+.. .... .-..+...+..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 8887644311100 00013445566666655 6677888888888887654211 1111 112245555566665
Q ss_pred C-chhHHHHHHHHHHHhcC
Q 013228 305 A-EFDIKNWAARAISNATF 322 (447)
Q Consensus 305 ~-~~~v~~~a~~aL~~l~~ 322 (447)
. .+.-|..+......+..
T Consensus 243 r~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4 45555555555555443
No 118
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.07 E-value=3.2e-05 Score=55.60 Aligned_cols=94 Identities=16% Similarity=0.335 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC
Q 013228 268 KTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347 (447)
Q Consensus 268 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 347 (447)
|+.+..+|..++.+-+......++. +++.++..+.++++.||..|+++|.|++.....+....+.+ +++.|..+..+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence 6677788888776544555555555 89999999999999999999999999998654444444444 78899999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 013228 348 ADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 348 ~~~~~~~~a~~~l~~l~~ 365 (447)
.++.++..| +.|.++++
T Consensus 80 ~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CchhHHHHH-HHHHHHhc
Confidence 999987655 77777764
No 119
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.07 E-value=1.5e-05 Score=57.04 Aligned_cols=87 Identities=29% Similarity=0.430 Sum_probs=69.4
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228 41 VPRFVEFL-MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119 (447)
Q Consensus 41 v~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 119 (447)
+|.|++.| ++++ +.+|..++++|+.+-. + ..++.|+.++.++++.+|..++++|+.+.
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 6666 9999999999995532 2 35899999999999999999999999983
Q ss_pred HHhcCCHHHHHHHhccccchhHHHHHHHHHH
Q 013228 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLS 150 (447)
Q Consensus 120 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~ 150 (447)
....++.+...+.++.+..++..+..+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12368899999966666677888888774
No 120
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0024 Score=57.53 Aligned_cols=224 Identities=17% Similarity=0.113 Sum_probs=163.2
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC-----c----HHHHHHHHhCcHHHHHHhcCCCCchh------Hh
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT-----N----DEIQAVIEAGVCPRLVELLGHPSPSV------LT 226 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~-----~----~~~~~~~~~~~~~~L~~lL~~~~~~v------~~ 226 (447)
....++++.++.+|.+.+..+...++..+..++..+ . ..+..+++.++++.|++-+..-++.+ ..
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 344788999999999999999999999998888531 1 34566778899999999886544433 34
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--
Q 013228 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-- 303 (447)
Q Consensus 227 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-- 303 (447)
.++..+-|++...+.....+.+.|.+..|+.-+... .-...+..|..+++-+...+.++...+-.-+++..+++-+.
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y 280 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence 567888899988888888888889999988855432 24456777778888777766666666667778888877654
Q ss_pred -cC------chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 013228 304 -NA------EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIA 376 (447)
Q Consensus 304 -~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 376 (447)
.. ..+...+...+|+.+.. .+.++..++...++....-+++. ....+..++++|...+...+..
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt------ 351 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT------ 351 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch------
Confidence 22 24566788888888877 45777888777777766656655 4456778888888887654432
Q ss_pred cccccHHHHHHHHhchHHHHHHH
Q 013228 377 IGDVNQYAQLVEEAEGLEKIENL 399 (447)
Q Consensus 377 ~~~~~~~~~~i~~~~~~~~l~~l 399 (447)
+.+..|-+.+|++.+-.+
T Consensus 352 -----~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 352 -----PNCNKFVEILGLRTIFPL 369 (536)
T ss_pred -----HHHHHHHHHHhHHHHHHH
Confidence 257778888888887765
No 121
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=0.0018 Score=64.21 Aligned_cols=346 Identities=16% Similarity=0.109 Sum_probs=212.8
Q ss_pred ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc--CCh
Q 013228 37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA--DSA 114 (447)
Q Consensus 37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~--~~~ 114 (447)
+....+..-++-+... +.++..++.-+++++..-+ ......+.++.+..+..+....+|..|...+.++.. +.+
T Consensus 235 k~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~ 310 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD 310 (759)
T ss_pred HHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence 3334444445555555 8888888888888887332 266777899999999999889999999988888762 212
Q ss_pred -hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH---------------------------------------HhcC
Q 013228 115 -RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS---------------------------------------NFCA 154 (447)
Q Consensus 115 -~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~---------------------------------------~l~~ 154 (447)
... ....+.+++.. .+.+..++.......+ .++.
T Consensus 311 ~d~~-----~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~ 384 (759)
T KOG0211|consen 311 DDVV-----KSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLAC 384 (759)
T ss_pred hhhh-----hhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhh
Confidence 111 12234444444 3333332222221111 1111
Q ss_pred CCC--CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228 155 GKP--KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV 232 (447)
Q Consensus 155 ~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 232 (447)
... .........++|.+..+..+.+..++...+..+..+..-.+.. + . -....+.++..+++..+.++......+
T Consensus 385 ~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~-t-i~~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 385 YLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE-R-T-ISELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred hcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC-c-C-ccccChhhhhhcchhhHHHHHhhHHHH
Confidence 110 0011112344566666666777777776666666554322210 0 0 124567777788888899998888777
Q ss_pred HHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHH
Q 013228 233 VNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNW 312 (447)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~ 312 (447)
..+-...+..-........++.+..+-... ...++.+..+.+-.++.... ..+++...-+.+...+.+....++..
T Consensus 462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~ 537 (759)
T KOG0211|consen 462 SLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREA 537 (759)
T ss_pred HHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHH
Confidence 666544443333344556778888877777 78899998888888876322 23333334455555566667889999
Q ss_pred HHHHHHHhcCCCC-HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhc
Q 013228 313 AARAISNATFGGT-HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAE 391 (447)
Q Consensus 313 a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 391 (447)
|+..+..++..-. ...+. ..++.+..+..+++.-.|...+.++..+.....+. +....
T Consensus 538 aa~~l~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----------------i~~~~ 596 (759)
T KOG0211|consen 538 AARNLPALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----------------ITCED 596 (759)
T ss_pred HHHHhHHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----------------HHHHH
Confidence 9988888776322 11122 24666666666666677888888888777654332 33345
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 392 GLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 392 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
.++.+..+..++.++|+-.+.+.+.++..
T Consensus 597 Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 597 LLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred HhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 56888889999999999999888887655
No 122
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.011 Score=58.80 Aligned_cols=342 Identities=15% Similarity=0.106 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc------CC-CCHHHHHHHHHHHHHHcCC--ChhhHHHHHhCCCh
Q 013228 14 LEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM------RE-DYPQLQFEAAWALKNIVSG--TSEDTKVVIDHGAV 84 (447)
Q Consensus 14 ~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i 84 (447)
..|...+..++++.+++.. .|.++.+++.+. .+ +++.-+..|++.+++++.. .+..-+..++.=++
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv 464 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 4566666666665323322 346777777776 22 2356778888888888741 11111122333345
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh---
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF--- 161 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--- 161 (447)
+.+...++++...+|..|+|+++.++...-.....+ ..++....+.|.++.+-.++..|+.+|..+.++.+....
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 667777788899999999999999994332222222 235677778886688889999999999999888743322
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHH-HHhccCCcHHHHHHHHhCcHHHHHHhcCC---C---CchhHhHHHHHHHH
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRAL-FYLSEGTNDEIQAVIEAGVCPRLVELLGH---P---SPSVLTRALQTVVN 234 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l-~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~---~~~v~~~a~~~l~~ 234 (447)
..+.+.+..++++.+.-+.+....++..+ +..+..-......+. ..+...+.+++.. . +.+-...|.++|..
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 23355666666666665555555544433 333322222212122 2455666666653 1 12233444444444
Q ss_pred hh---c---CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchh
Q 013228 235 IA---A---GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD 308 (447)
Q Consensus 235 l~---~---~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~ 308 (447)
+. . ..+...+ -++..+++.+-.+|++. -.++-.+++..+.++....++.--.+.. +++.+.+.+.....+
T Consensus 622 i~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~d 697 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLK-QLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGID 697 (1010)
T ss_pred HHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHH
Confidence 42 1 2222222 23345667777777777 7778888888887776544332222222 567777777777777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHH-HHcCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhhh
Q 013228 309 IKNWAARAISNATFGGTHEQIKYL-VREGCIKPLCDLLLCA---DPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 309 v~~~a~~aL~~l~~~~~~~~~~~l-~~~~~l~~L~~ll~~~---~~~~~~~a~~~l~~l~~~~~ 368 (447)
.-...+-+|.|+...+.+.....- ...-.++.+..++.+. +.+ .+.|++.+..++-.+.
T Consensus 698 yf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d-~~~a~kLle~iiL~~k 760 (1010)
T KOG1991|consen 698 YFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSD-CESACKLLEVIILNCK 760 (1010)
T ss_pred HHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHhc
Confidence 778888899998887655332110 0011233444445442 333 4456677777765443
No 123
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.00 E-value=0.012 Score=58.05 Aligned_cols=306 Identities=11% Similarity=0.069 Sum_probs=183.3
Q ss_pred cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 013228 6 WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVP 85 (447)
Q Consensus 6 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 85 (447)
.++-|.+...+.+.+.+.++.. .....+.. -.+...+..+.....+-++..|+++++..++. +... -...+++.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~-~~~p~ild 533 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSST--VINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLL-SLQPMILD 533 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhh--ccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eecc-ccchHHHH
Confidence 4455777778888888777652 11111111 13444455555444378888999988888842 2111 12236778
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-cccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228 86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-KHAKLSMLRIATWTLSNFCAGKPKPIFDQV 164 (447)
Q Consensus 86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (447)
.|.++....+.++.-..+.+|+..+..+|+.... .+..+.|..+.+.. .+.|+.+...+--++..++... .......
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~ 611 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQ 611 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchH
Confidence 8888888888999999999999999888865443 34455665555543 4556766666666666666532 2222334
Q ss_pred hhhHHHHHHhhccCC----hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCC
Q 013228 165 RPALPALAQLVHSND----KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGD 239 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~----~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~ 239 (447)
...+|.++..+..++ .....-++..|..+.++.+.-.....-.-.+|.+.+.. .+++......+..||..+....
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 678999999998766 56666677777766655432223333445678887776 5567788888999999888766
Q ss_pred hhhHHHHHhcCCh------HHHHHhhccCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHcCChHHHHHHHh-cCchh
Q 013228 240 DFQTQCIINCGAL------PYLLGLLIHNHKKSIKTDACWTISNIT----AGNSEHIQAVIDAGLIGPLVNLLQ-NAEFD 308 (447)
Q Consensus 240 ~~~~~~~~~~~~l------~~l~~~l~~~~~~~v~~~a~~~l~nl~----~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~ 308 (447)
.++...--..++. ..+..+|.. +.-..++..++.+. .+.+.....-++. ++..++.-|. .+...
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp----~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls 766 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDP----ETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS 766 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCC----ccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence 5443333232332 333444432 23333333444333 2222222222222 3343444333 46778
Q ss_pred HHHHHHHHHHHhcCCC
Q 013228 309 IKNWAARAISNATFGG 324 (447)
Q Consensus 309 v~~~a~~aL~~l~~~~ 324 (447)
+.+.-..+++.+....
T Consensus 767 viQsLi~VfahL~~t~ 782 (1005)
T KOG2274|consen 767 VIQSLIMVFAHLVHTD 782 (1005)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 8888888999988764
No 124
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0042 Score=56.08 Aligned_cols=229 Identities=12% Similarity=0.110 Sum_probs=159.7
Q ss_pred CCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-----h----hhHHHHHhCCChHHHHHhhCCCC----
Q 013228 29 SAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGT-----S----EDTKVVIDHGAVPIFVKLLASPS---- 95 (447)
Q Consensus 29 ~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~~~i~~L~~ll~~~~---- 95 (447)
+.....+++.++++.|+.+|.+.+ .++....+..+..++..+ . .....+++.++++.|++-+..-+
T Consensus 115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 444557788999999999999999 799999999999988632 1 23456778899999998886533
Q ss_pred --HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccc-cchhHHHHHHHHHHHhcCCCCCCChh-hHhhhHHHH
Q 013228 96 --DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKH-AKLSMLRIATWTLSNFCAGKPKPIFD-QVRPALPAL 171 (447)
Q Consensus 96 --~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~l 171 (447)
..-...++..+-|+....+.+...+.+.|.+.-|+.-+... .-.....+|..++.-+..++...... ..-.++..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 33445778888899988888888888888888888755332 33456777888888887776322221 113344444
Q ss_pred HHhh----ccC-----ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh--
Q 013228 172 AQLV----HSN-----DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD-- 240 (447)
Q Consensus 172 ~~ll----~~~-----~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-- 240 (447)
++-+ .++ ..+..++...+|+.+...+..+ ..++...+++...-.++. ....+..++.+|-....+.+
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence 4433 221 2456777788888888766654 567777777766655655 55667888999988887776
Q ss_pred hhHHHHHhcCChHHHHHhhc
Q 013228 241 FQTQCIINCGALPYLLGLLI 260 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~ 260 (447)
..+..+++..++..+.....
T Consensus 352 ~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 352 PNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHHhHHHHHHHHh
Confidence 56677788777777666553
No 125
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00044 Score=66.07 Aligned_cols=266 Identities=17% Similarity=0.154 Sum_probs=154.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
+....|.+.|++.+++.++.-++--|+-..-++.. ..+.+.+-..|..++...-+.|..+++-+...+.. .+
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~-------~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e 484 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN-------EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE 484 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhccccc-------HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH
Confidence 35566677776666566777776665554443221 12345566666666666666666666665543331 11
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~ 198 (447)
++..+...-.......+.+-..-.+.-..... ..+.=+.+-+++.+.|+-+|.....++.---....
T Consensus 485 ------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg 551 (929)
T KOG2062|consen 485 ------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG 551 (929)
T ss_pred ------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC
Confidence 12333333322233444444332222222111 12444566678888888888877765542221121
Q ss_pred HHHHHHHHhCcHHHHHHh-cCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 199 DEIQAVIEAGVCPRLVEL-LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 199 ~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
..+++..|+.. .++.+.+||+.|..+|+-++..+++. ++..+.+|..+.++.||.-++.+|+-
T Consensus 552 -------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGI 615 (929)
T KOG2062|consen 552 -------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGI 615 (929)
T ss_pred -------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhh
Confidence 12456777777 57889999999999999988877743 44567777766699999999999998
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH
Q 013228 278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP 350 (447)
Q Consensus 278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 350 (447)
.|.++... . .+..|-.+..+...-||+-|+.++.-+....++...... .++.+.+.+.+.+.+.
T Consensus 616 aCAGtG~~--e-----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 616 ACAGTGLK--E-----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHE 679 (929)
T ss_pred hhcCCCcH--H-----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhh
Confidence 88864221 1 233334444555667888888888777654433322221 2234445555555444
No 126
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.98 E-value=2.6e-05 Score=55.76 Aligned_cols=87 Identities=31% Similarity=0.447 Sum_probs=70.0
Q ss_pred HHHHHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHH
Q 013228 168 LPALAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI 246 (447)
Q Consensus 168 l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 246 (447)
+|.|++.+ +++++.++..++++|+.+. +. ..++.|..++.++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57788888 8889999999999998542 11 34799999999999999999999999763
Q ss_pred HhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228 247 INCGALPYLLGLLIHNHKKSIKTDACWTIS 276 (447)
Q Consensus 247 ~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~ 276 (447)
....++.|.+++.++.+..+|..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12478889999988746777999988875
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.96 E-value=1.7e-05 Score=50.84 Aligned_cols=55 Identities=25% Similarity=0.480 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 265 KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 265 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
+.+|..|+|+|++++...++..+..... +++.|+.++.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~-~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPE-LLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHH-HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999987777766665444 899999999988899999999999875
No 128
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.019 Score=57.37 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHHHccCC-CCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228 8 DDNNMQLEATTHIRKLLSNAR-SAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI 86 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 86 (447)
.++.....|++.+..+++.-. +...+-..+.-+++.+...++++. --+|.+|||+++.++.. ++.+.-.-..+++.
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~--df~d~~~l~~ale~ 506 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSI--DFKDPNNLSEALEL 506 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhc--cCCChHHHHHHHHH
Confidence 446666677777777664321 222233344446677777778888 68999999999999952 22222222345666
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 87 FVKLLA-SPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 87 L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
..+.|. +.+..++-.|+.+|..+..+.+....
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 677666 67788999999999999877664433
No 129
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.011 Score=58.36 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=91.8
Q ss_pred cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 013228 6 WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVP 85 (447)
Q Consensus 6 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 85 (447)
.+.|.+++.-.-.+|...+... + +.++- +++.+.+=+++++ +.+|..|++.++.+=. ++... .+++
T Consensus 65 ~trd~ElKrL~ylYl~~yak~~--P--~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-----~~~~ 130 (757)
T COG5096 65 ATRDVELKRLLYLYLERYAKLK--P--ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-----NIID 130 (757)
T ss_pred HhcCHHHHHHHHHHHHHHhccC--H--HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-----HHHH
Confidence 3455555555555555555542 1 11111 4666777778888 8999999988887744 23222 3568
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
++.+++.++++.+|+.|+.++.++-.-++ +.+.+.|.+..+..++ .++|+.+..+|+.++..+...
T Consensus 131 ~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 131 PIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 88999999999999999999999976544 3444555566666666 888999999999999888755
No 130
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0012 Score=63.77 Aligned_cols=280 Identities=17% Similarity=0.133 Sum_probs=149.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 013228 42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL 121 (447)
Q Consensus 42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 121 (447)
+.+-.++.+.. ..+..+|++++..+...++.... ..+..|-.++.++...+|-.|.++|..++.-.|.. +.
T Consensus 248 ~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---v~ 318 (865)
T KOG1078|consen 248 PFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---VT 318 (865)
T ss_pred HHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---cc
Confidence 33444555566 67778888888877764433221 15666777777788888888888888887655431 11
Q ss_pred hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCC---hhHHHHHHHHHHHhccCCc
Q 013228 122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND---KEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~v~~~al~~l~~l~~~~~ 198 (447)
. +-..+-.++ ++.+..+-..|...|..--. .. .....+..+..+..+-+ .-+..+++.+++... +
T Consensus 319 ~--cN~elE~lI-td~NrsIat~AITtLLKTG~---e~---sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p 386 (865)
T KOG1078|consen 319 V--CNLDLESLI-TDSNRSIATLAITTLLKTGT---ES---SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---P 386 (865)
T ss_pred c--cchhHHhhh-cccccchhHHHHHHHHHhcc---hh---HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---c
Confidence 1 111122222 33333332223222222111 11 11222222333333222 233333444443332 2
Q ss_pred HHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 199 DEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 199 ~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
-. ..+.+..|..+|.+ +..+.+.....++..+...+++... .++..|...+.+. +...-+...+.-
T Consensus 387 ~k-----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhl 453 (865)
T KOG1078|consen 387 RK-----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHL 453 (865)
T ss_pred HH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHH
Confidence 11 12445666666644 4456677777777777776665444 3455677766554 444555555655
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228 278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL 357 (447)
Q Consensus 278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~ 357 (447)
+....|. .......+..+.+.+.-++..+|..|..+|.++.... +... ..+...|.+++.+.|.+++..|.
T Consensus 454 LG~EgP~---a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~-~~l~-----~sI~vllkRc~~D~DdevRdrAt 524 (865)
T KOG1078|consen 454 LGKEGPK---APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQD-VVLL-----PSILVLLKRCLNDSDDEVRDRAT 524 (865)
T ss_pred HhccCCC---CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCC-CCcc-----ccHHHHHHHHhcCchHHHHHHHH
Confidence 5442211 0111223444555555567888889999999888432 2111 23456677888888889998888
Q ss_pred HHHHHHH
Q 013228 358 KGLEKIL 364 (447)
Q Consensus 358 ~~l~~l~ 364 (447)
-.+..+-
T Consensus 525 f~l~~l~ 531 (865)
T KOG1078|consen 525 FYLKNLE 531 (865)
T ss_pred HHHHHhh
Confidence 8877776
No 131
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0033 Score=60.83 Aligned_cols=285 Identities=14% Similarity=0.152 Sum_probs=168.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ 163 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (447)
.+.+-..+++....+...+++++.++....+. ... ..+..+-.++ +++...++..|..+|..++...|....
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~---pavs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~-- 318 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELA---PAVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVT-- 318 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcc---hHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCcccc--
Confidence 34555566677888888888888888754432 111 1333333333 677778888899999888876543322
Q ss_pred HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhH
Q 013228 164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQT 243 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~ 243 (447)
-+-.-|-.++.+.+-.+-..|+..+..-. .+.....+ +..+..++.+-+.+.+.-+..++..+|...+...
T Consensus 319 --~cN~elE~lItd~NrsIat~AITtLLKTG--~e~sv~rL-----m~qI~~fv~disDeFKivvvdai~sLc~~fp~k~ 389 (865)
T KOG1078|consen 319 --VCNLDLESLITDSNRSIATLAITTLLKTG--TESSVDRL-----MKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH 389 (865)
T ss_pred --ccchhHHhhhcccccchhHHHHHHHHHhc--chhHHHHH-----HHHHHHHHHhccccceEEeHHHHHHHHhhccHHH
Confidence 22233455566666666666665554332 22222322 2333333333334444444444445554444222
Q ss_pred HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 244 QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 244 ~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
.+.+..|..+|+.....+.++..+.++..+....++... .++..|+..+.+. +...-+...|.-+...
T Consensus 390 -----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~E 457 (865)
T KOG1078|consen 390 -----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKE 457 (865)
T ss_pred -----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhcc
Confidence 245667888887654678888888888888775555432 3566677777632 3334556666555543
Q ss_pred CCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC
Q 013228 324 GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD 403 (447)
Q Consensus 324 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~ 403 (447)
+.. .-.....+..+.+-..-.+..++..|+.++.++...++... ....-.+.+.+++.
T Consensus 458 gP~----a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~------------------~sI~vllkRc~~D~ 515 (865)
T KOG1078|consen 458 GPK----APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL------------------PSILVLLKRCLNDS 515 (865)
T ss_pred CCC----CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc------------------ccHHHHHHHHhcCc
Confidence 211 11112345555666666778889999999999984333321 12234555778899
Q ss_pred CHHHHHHHHHHHHHhc
Q 013228 404 NDEIHEKSVKILETYW 419 (447)
Q Consensus 404 ~~~v~~~a~~~l~~~~ 419 (447)
+.+++++|.-.+...-
T Consensus 516 DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 516 DDEVRDRATFYLKNLE 531 (865)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999998888775
No 132
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.82 E-value=0.00017 Score=51.83 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 013228 56 LQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL--ASPSDDIREQAVCALGNVAADSARCRDLVLS 122 (447)
Q Consensus 56 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 122 (447)
.+...+++|++++..++..++.+.+.|+++.++... +..+|-++++|++++.+|+..+++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 366788999999999999999999999999999865 3478999999999999999999988877654
No 133
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.013 Score=59.65 Aligned_cols=237 Identities=14% Similarity=0.090 Sum_probs=147.4
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhcCCCCC--CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 013228 128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPK--PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI 205 (447)
Q Consensus 128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 205 (447)
.+.....++.+..++..+...|..++...+. ........+...+..-+++.....+...+.++..+....+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3444444566788999999999999987321 12223356667777778888888999999999888866553223344
Q ss_pred HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc-------CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228 206 EAGVCPRLVELLGHPSPSVLTRALQTVVNIAA-------GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI 278 (447)
Q Consensus 206 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~-------~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl 278 (447)
..-+.+.++.. ++.+...|..+..+|..++. +++. ....++ .+++.+...+... ...+......++..+
T Consensus 737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI 812 (1176)
T ss_pred HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence 43344444444 77888888888888888773 1111 111111 2344444444333 333333324444444
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 013228 279 TAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358 (447)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~ 358 (447)
..........-.-.+++..+..++.+..++++..|+.++.-++..-........ ...+++.+..++++....++..+-.
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 432222111112223555566667788999999999999988887544443332 2246788888888888899999999
Q ss_pred HHHHHHHhhhh
Q 013228 359 GLEKILKVGEA 369 (447)
Q Consensus 359 ~l~~l~~~~~~ 369 (447)
.|..+++....
T Consensus 892 LlekLirkfg~ 902 (1176)
T KOG1248|consen 892 LLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHhCH
Confidence 99999876544
No 134
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.81 E-value=0.0067 Score=57.48 Aligned_cols=262 Identities=14% Similarity=0.121 Sum_probs=157.9
Q ss_pred HHHHHHHcCCChhhHHHHHhCCChHHHHHhh----------CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHH
Q 013228 61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLL----------ASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLL 130 (447)
Q Consensus 61 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----------~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~ 130 (447)
+.+|.-++. ++.....+....++..|.++- ...++.+...|+++|+|+...++..|..+.+.+....++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 344444555 455555555555666666554 236889999999999999999999999999999999999
Q ss_pred HHhcccc----chhHHHHHHHHHHHhcCCCCCCChhhH--hhhHHHHHHhhc----c-------------CChhHHHHHH
Q 013228 131 TQLNKHA----KLSMLRIATWTLSNFCAGKPKPIFDQV--RPALPALAQLVH----S-------------NDKEVMTDAC 187 (447)
Q Consensus 131 ~~l~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~ll~----~-------------~~~~v~~~al 187 (447)
..|.... +.++.......+.-++...+....... .+++..+...+. . .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 9996542 566777777777777765533333322 344554444332 1 1455677889
Q ss_pred HHHHHhccCCcHHHH-HHHH--hCcHHHHHHhc--C---CCCchhHhHHHHHHHHhhcCChhh-------HH----HHHh
Q 013228 188 RALFYLSEGTNDEIQ-AVIE--AGVCPRLVELL--G---HPSPSVLTRALQTVVNIAAGDDFQ-------TQ----CIIN 248 (447)
Q Consensus 188 ~~l~~l~~~~~~~~~-~~~~--~~~~~~L~~lL--~---~~~~~v~~~a~~~l~~l~~~~~~~-------~~----~~~~ 248 (447)
+.+.|+......... .... ..++..+..++ . .+.......++.+|.|+-...... .. ...+
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 999999865543321 1111 12334444442 1 122456667777777763211110 00 0112
Q ss_pred cCChHHHHHhhcc----CCc---hhHHHHHHHHHHHHhcCCHHHHHHHHH----------------cCChHHHHHHHhcC
Q 013228 249 CGALPYLLGLLIH----NHK---KSIKTDACWTISNITAGNSEHIQAVID----------------AGLIGPLVNLLQNA 305 (447)
Q Consensus 249 ~~~l~~l~~~l~~----~~~---~~v~~~a~~~l~nl~~~~~~~~~~l~~----------------~~~~~~L~~~l~~~ 305 (447)
...+..++.+|.. ... .+.-.-.+.+|.+++..+...++++.. ..+-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2345556666532 111 133444566777777765554444432 23466788888888
Q ss_pred chhHHHHHHHHHHHhcCC
Q 013228 306 EFDIKNWAARAISNATFG 323 (447)
Q Consensus 306 ~~~v~~~a~~aL~~l~~~ 323 (447)
.+.++..+...|..++..
T Consensus 321 ~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CchHHHHHHHHHHHHHhh
Confidence 899999999999888764
No 135
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.73 E-value=4.5e-05 Score=48.79 Aligned_cols=55 Identities=31% Similarity=0.439 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228 139 LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL 193 (447)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l 193 (447)
+.++..++++|.+++...+.........++|.|..+|+++++.|+..++++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3688999999999887765555556689999999999999999999999999875
No 136
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.67 E-value=0.00049 Score=67.41 Aligned_cols=190 Identities=18% Similarity=0.126 Sum_probs=129.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH--------HHHh----cCCHHHHHHHhccccchhHHHHHHHHHH
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD--------LVLS----EEALIPLLTQLNKHAKLSMLRIATWTLS 150 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~--------~~~~----~~~l~~l~~~l~~~~~~~~~~~a~~~L~ 150 (447)
+-..++.+|.+ +++-..+..++.-+..+++.... .+.+ ..++|.+++... ..+...+..-..+|.
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-TAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-cCCccchhHHHHHHH
Confidence 33455666644 55556666777777666544321 1222 245777777773 455667777888888
Q ss_pred HhcCCCCCCChh-hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC---chhHh
Q 013228 151 NFCAGKPKPIFD-QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS---PSVLT 226 (447)
Q Consensus 151 ~l~~~~~~~~~~-~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~~ 226 (447)
++..+-|..... ....++|.|++.|.-+|..++..++.++.-+......... -.-.-++|.++.+-.+.+ ..+|.
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t-~~~~Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT-EHLSTLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch-HHHhHHHHHHHhcCCCCCcchhHHHH
Confidence 888765442222 2377889999999999999999999999877754433222 112246777777766655 67899
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 227 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
.|+.++..+.+.-|...-......++..+.+.|.++ ..-+|++|+.+=.+
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence 999999999986554444445557888999999999 88999999876544
No 137
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.66 E-value=0.00016 Score=42.93 Aligned_cols=39 Identities=33% Similarity=0.629 Sum_probs=35.7
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 013228 72 SEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA 110 (447)
Q Consensus 72 ~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~ 110 (447)
++.+..+.+.|+++.|++++.++++++++.++|+|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347778899999999999999999999999999999996
No 138
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0077 Score=58.11 Aligned_cols=218 Identities=14% Similarity=0.096 Sum_probs=120.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ 163 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (447)
+..+..+|.+.++.++..|+.+|.+++.++...+. +...++.++.+.+|..++--.+.-|..+. ......
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~----~~~~~i 314 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELK----ALHEKI 314 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHh----hhhHHH
Confidence 44555666666666666666666666554432221 13445555544444444444444444443 122233
Q ss_pred HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh
Q 013228 164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ 242 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 242 (447)
..+.+-.++++|.++|-+++..++.....++.... +..-.+++..+...--. =.+++...|..-+.++...+...++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 45666667788899999999999998888875432 11111222111111000 01234566888888888888766655
Q ss_pred HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhc
Q 013228 243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNAT 321 (447)
Q Consensus 243 ~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~ 321 (447)
.. .+++.+++.+.+. ++.........+.......|..+.. ++..|+.-+. -...++.+-|+|.++..+
T Consensus 394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 44 4677899999887 6665555555555554444443332 3333443333 134555566666666655
Q ss_pred CC
Q 013228 322 FG 323 (447)
Q Consensus 322 ~~ 323 (447)
..
T Consensus 463 e~ 464 (948)
T KOG1058|consen 463 EG 464 (948)
T ss_pred hh
Confidence 53
No 139
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.65 E-value=0.014 Score=52.67 Aligned_cols=203 Identities=12% Similarity=0.053 Sum_probs=143.5
Q ss_pred HHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh-----HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228 202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ-----TQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS 276 (447)
Q Consensus 202 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~ 276 (447)
+.+...+.+..|+..|..-+.+.|+.+..+.+++.+..... ...+. ...-+.+..++....++++-..+..+|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 45667799999999999999999999999999998654322 22332 2323444444443335566666777777
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhccCCCHHHH
Q 013228 277 NITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE---GCIKPLCDLLLCADPEIV 353 (447)
Q Consensus 277 nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~~~ 353 (447)
.++.. +...+.++....+..+.+.++.++.++...|...+..+... .+.....+... .+......++.+++.-++
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 77654 56677888888999999999999999999999999988776 34444444443 346677889999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013228 354 TVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET 417 (447)
Q Consensus 354 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 417 (447)
..+++.|..++........ ..+.+.+..-++.+..++.+++..++-.|=.+..-
T Consensus 227 rqslkLL~ellldr~n~~v----------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNV----------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHH----------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHH----------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 9999999999976655332 24566667778889999999998888777666554
No 140
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00019 Score=65.09 Aligned_cols=275 Identities=18% Similarity=0.122 Sum_probs=151.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCC----CCchhhhhccCCHHHHHH-------hhcCCCCHHHHHHHHHHHHHHcCCCh
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNAR----SAPTEEVIPFGVVPRFVE-------FLMREDYPQLQFEAAWALKNIVSGTS 72 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~~~v~~L~~-------ll~~~~~~~v~~~a~~~L~~l~~~~~ 72 (447)
++...++++++.++.++.++..+-. ++..+.-...|.+-...- ...+.. +..+..++.++.++.....
T Consensus 303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEAF 381 (728)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchhh
Confidence 5667789999999999988765421 222222222222211110 112233 4567777777777765221
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228 73 EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF 152 (447)
Q Consensus 73 ~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (447)
+.-..-.+.-.+..+...-++.+.-++..|.++++-+.-+.....+.....++...++..+ .+..-..+..++|+++++
T Consensus 382 ~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 382 SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhh
Confidence 1100000000111111222234555777888888887766554444444445555566666 454567888999999998
Q ss_pred cCCC----CCCChhhH---hhhHHHHHHhhc---cCChhHHHHHHHHHHHhccCCcHHHH---HHHHhCcHHHHHHh-cC
Q 013228 153 CAGK----PKPIFDQV---RPALPALAQLVH---SNDKEVMTDACRALFYLSEGTNDEIQ---AVIEAGVCPRLVEL-LG 218 (447)
Q Consensus 153 ~~~~----~~~~~~~~---~~~l~~l~~ll~---~~~~~v~~~al~~l~~l~~~~~~~~~---~~~~~~~~~~L~~l-L~ 218 (447)
+..- |....... ...+..++..-. -...+|+..+.++|+|+...-+...+ .....+.+..+... .-
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~ 540 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLT 540 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceec
Confidence 7432 33322222 222223333222 23578999999999998843221100 01111222222222 23
Q ss_pred CCCchhHhHHHHHHHHhhcCChh-hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 219 HPSPSVLTRALQTVVNIAAGDDF-QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 219 ~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
.....|+..+|.+++|+..+..- ....-....+++.|..++.+..+.++|..|+.+|.--..
T Consensus 541 ~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 541 EAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred ccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 35678999999999999975432 111122334567788888766689999999998876654
No 141
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.0069 Score=55.37 Aligned_cols=405 Identities=11% Similarity=0.067 Sum_probs=196.8
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCc--------------hhhhhccC---CHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAP--------------TEEVIPFG---VVPRFVEFLMREDYPQLQFEAAWALKN 66 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~--------------~~~~~~~~---~v~~L~~ll~~~~~~~v~~~a~~~L~~ 66 (447)
.|++.++..+..|+..+..++.++ ... -..++... .-..|+-.|..+.++.+..+++.||.+
T Consensus 55 ~lkd~~~~~ra~alqv~~~~l~gs-k~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~ 133 (728)
T KOG4535|consen 55 TLKDPSPKTRACALQVLSAILEGS-KQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLAN 133 (728)
T ss_pred ecCCCChhHHHHHHHHHHHHHHhh-HHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 467788888888888888777553 111 11122221 223455555555557899999999999
Q ss_pred HcCCChhhHHHH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCC-------------HHHHHHH
Q 013228 67 IVSGTSEDTKVV-IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA-------------LIPLLTQ 132 (447)
Q Consensus 67 l~~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~-------------l~~l~~~ 132 (447)
+....+-.+-.+ .-..++..+..++++.++.++-.++..++.+...+....+.-...+. .+..-+.
T Consensus 134 lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~ 213 (728)
T KOG4535|consen 134 LVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKK 213 (728)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHh
Confidence 998665544332 11234566667788899999999999998887533221111000000 0000000
Q ss_pred hcc-------------------------------------------------ccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228 133 LNK-------------------------------------------------HAKLSMLRIATWTLSNFCAGKPKPIFDQ 163 (447)
Q Consensus 133 l~~-------------------------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (447)
|-. .....++-.+..+|..++++. ......
T Consensus 214 l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~~~~ 292 (728)
T KOG4535|consen 214 LPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMTQAY 292 (728)
T ss_pred cCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHHHHH
Confidence 000 001123333444443333321 000000
Q ss_pred HhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-----CcHHHHHHHHhCcHHHHHH------hc-CCCCchhHhHHHHH
Q 013228 164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEG-----TNDEIQAVIEAGVCPRLVE------LL-GHPSPSVLTRALQT 231 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~-----~~~~~~~~~~~~~~~~L~~------lL-~~~~~~v~~~a~~~ 231 (447)
...+...+...+.+.++.++.++..++..+... .++..+.-...+.+-.+.. .. .+..+..+..+|..
T Consensus 293 ~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cda 372 (728)
T KOG4535|consen 293 LMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDA 372 (728)
T ss_pred HHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHH
Confidence 112222233334466788888888777665531 1111111122222222111 11 22334556677777
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHH
Q 013228 232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKN 311 (447)
Q Consensus 232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~ 311 (447)
+.++.....+....-.....+..+...=++. +.-++.+|..++.-+..+..-......-.+....+...+.+.....|.
T Consensus 373 ls~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~-~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~ 451 (728)
T KOG4535|consen 373 LSSILPEAFSNLPNDRQTLCITFLLGCNDSK-NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRA 451 (728)
T ss_pred HhhcCchhhcCCCCcchhhhHHHHhcccchH-HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHH
Confidence 7777532211100000000111122222233 455666666666655443222122222233566666777777889999
Q ss_pred HHHHHHHHhcCC---CCHH---HHHHHHHcCChHHHHhhcc--C-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccH
Q 013228 312 WAARAISNATFG---GTHE---QIKYLVREGCIKPLCDLLL--C-ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQ 382 (447)
Q Consensus 312 ~a~~aL~~l~~~---~~~~---~~~~l~~~~~l~~L~~ll~--~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 382 (447)
+++|+++|++.. +.|. ....+.- -.+..+.+.-. + .+.+++..+.++|.++...-....+. .
T Consensus 452 KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~--------~ 522 (728)
T KOG4535|consen 452 KAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKP--------T 522 (728)
T ss_pred HHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhc--------c
Confidence 999999999751 1111 2222211 12333333221 2 23478889999999998765432211 0
Q ss_pred HHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 383 YAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 383 ~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
+...++ ....+.+....-..+-.|+=.|..++.++|..
T Consensus 523 ~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 523 FAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 122222 22222222223344566777778888887754
No 142
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.043 Score=54.32 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=128.3
Q ss_pred hcCCCCHHHHHHHHH-HHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCH
Q 013228 48 LMREDYPQLQFEAAW-ALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126 (447)
Q Consensus 48 l~~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l 126 (447)
+.+.+ +..|..|++ ++..++.+.+ ... ..+-+++...+.+.++++-+-.-|.+++...|. ..+. ++
T Consensus 28 l~s~n-~~~kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---av 94 (757)
T COG5096 28 LESSN-DYKKIDAMKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AV 94 (757)
T ss_pred ccccC-hHHHHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HH
Confidence 55666 566666664 6666776544 222 345567766688999999999999999887773 2332 36
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 013228 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE 206 (447)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 206 (447)
..+..-+ .++++.+|..|+.+++.+= .......+++.+.+++.++++.||..|+-++.++-+.+.+ ...+
T Consensus 95 Nti~kDl-~d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~ 164 (757)
T COG5096 95 NTIQKDL-QDPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHE 164 (757)
T ss_pred HHHHhhc-cCCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhc
Confidence 6777777 7889999999999887653 3345577889999999999999999999999999866544 3456
Q ss_pred hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 207 AGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 207 ~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
.|....+..++.+.++.+...|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 68888899999999999999999999887643
No 143
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.62 E-value=0.0011 Score=64.28 Aligned_cols=243 Identities=14% Similarity=0.061 Sum_probs=163.3
Q ss_pred CCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHH
Q 013228 69 SGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALG-NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATW 147 (447)
Q Consensus 69 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~ 147 (447)
.....-+...++.|+...|+.+.....+.-+.....+|. .+...... ....++++...+.++....-...++.
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~ 564 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALE 564 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHH
Confidence 335666777888999999999998888888888777877 33322211 12345666666522222222334888
Q ss_pred HHHHhcCCCCCCChhhH-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCCCCchhH
Q 013228 148 TLSNFCAGKPKPIFDQV-RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGHPSPSVL 225 (447)
Q Consensus 148 ~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~v~ 225 (447)
++.||+..+........ .-.++.+-.++...++..+..++.++.||..++.-....+.+. ..++.....+........
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~ 644 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE 644 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence 99999887744444443 4455666777888899999999999999997766555555553 445555556666666677
Q ss_pred hHHHHHHHHhhcCChhhHH-HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 013228 226 TRALQTVVNIAAGDDFQTQ-CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304 (447)
Q Consensus 226 ~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~ 304 (447)
..++.++..++......+. ..-...+...+..++.+. +.+++......+.|+.....+....++....++.+...-.-
T Consensus 645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~ 723 (748)
T KOG4151|consen 645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKL 723 (748)
T ss_pred hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 7777777766554444433 333346788899999999 99999999999999766666777777777777766665544
Q ss_pred CchhHHHHHHHHHH
Q 013228 305 AEFDIKNWAARAIS 318 (447)
Q Consensus 305 ~~~~v~~~a~~aL~ 318 (447)
.....++.+..+|.
T Consensus 724 ~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 724 NRAPKREDAAPCLS 737 (748)
T ss_pred hhhhhhhhhhhHHH
Confidence 44444444544443
No 144
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.62 E-value=0.048 Score=49.24 Aligned_cols=225 Identities=10% Similarity=0.105 Sum_probs=153.9
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHH-----HHHHHHh--CcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE-----IQAVIEA--GVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~-----~~~~~~~--~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
.+.+..|+..|..-+-+.+..+.....++.....+. ...+... .++..|+..- +++++...+...|..++.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 578888999999999999999999999988653221 2222221 2333443333 355565666666665555
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCchhHHHHHH
Q 013228 238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAG---LIGPLVNLLQNAEFDIKNWAA 314 (447)
Q Consensus 238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~~~~L~~~l~~~~~~v~~~a~ 314 (447)
.+...+.++....+..+.+.+..+ +-++...|..++..+....+.....++..+ ++.....++.++++-+++.++
T Consensus 153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 556677888888888899999999 999999999999998877777666766543 567788888899999999999
Q ss_pred HHHHHhcCCC-CHHH-HHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH--h
Q 013228 315 RAISNATFGG-THEQ-IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE--A 390 (447)
Q Consensus 315 ~aL~~l~~~~-~~~~-~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~ 390 (447)
..|+.+.... +... ..++.+..-+..++.+|.+....++..|..++.-++.+..+.. ++..++.. .
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~----------~I~~iL~~Nr~ 300 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP----------PIVDILIKNRE 300 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH----------HHHHHHHHTHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh----------HHHHHHHHHHH
Confidence 9999998742 2222 2344445568889999999999999999999998887765432 34555542 3
Q ss_pred chHHHHHHHhcCC
Q 013228 391 EGLEKIENLRSHD 403 (447)
Q Consensus 391 ~~~~~l~~l~~~~ 403 (447)
..++.+.++....
T Consensus 301 kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 301 KLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHHTTTTT-
T ss_pred HHHHHHHhCCCCC
Confidence 4455566655444
No 145
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.60 E-value=0.038 Score=52.88 Aligned_cols=296 Identities=13% Similarity=0.095 Sum_probs=151.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 013228 42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL 121 (447)
Q Consensus 42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 121 (447)
..++...+ ++ +..+..|+..+.......|+..+. ++..++.+.++.+..||.+|++.|..+|.+.+.....+
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 34444444 45 799999999999999988887664 56789999999999999999999999998876554443
Q ss_pred hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc---cCChhHHHHHHHHHHHhcc-CC
Q 013228 122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH---SNDKEVMTDACRALFYLSE-GT 197 (447)
Q Consensus 122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~v~~~al~~l~~l~~-~~ 197 (447)
...|+++| ...+..-...+-.+|..+...++ .+.+..+..-+. ++++.+++.++..|..-.. -.
T Consensus 98 ----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 98 ----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 56788888 55555555555556655554321 344444554444 6788899999988754332 11
Q ss_pred cHHHH--HHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC----ChhhHHHHHhcCChHHHHHhh------ccCCch
Q 013228 198 NDEIQ--AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG----DDFQTQCIINCGALPYLLGLL------IHNHKK 265 (447)
Q Consensus 198 ~~~~~--~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~~~~l~~l~~~l------~~~~~~ 265 (447)
.+... .=.+.-++..+.+.|.+-...--...+.+|..+-.+ .....+.++ +.+.+.. ... +.
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccCCCCCCc-CH
Confidence 11111 112223455666777664443334445555555441 233333332 2333322 222 34
Q ss_pred hHHHHHHHHHHH-H---hc--CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH
Q 013228 266 SIKTDACWTISN-I---TA--GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIK 339 (447)
Q Consensus 266 ~v~~~a~~~l~n-l---~~--~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~ 339 (447)
+.......|+.. + +. .+.....++.+. ++|.+-.+ +.+.+...+.++..++..........+++ -++.
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~ 313 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ 313 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence 444434333332 1 11 233444444443 77755555 45667778888888877654322332221 1334
Q ss_pred HHHhhccCC--CH----HHHHHHHHHHHHHHHhhhh
Q 013228 340 PLCDLLLCA--DP----EIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 340 ~L~~ll~~~--~~----~~~~~a~~~l~~l~~~~~~ 369 (447)
.|..++-.. .+ ..++..+.++..|....+.
T Consensus 314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 444444332 33 3455666666677665444
No 146
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.016 Score=58.97 Aligned_cols=242 Identities=12% Similarity=0.072 Sum_probs=148.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hHHHHHH
Q 013228 45 VEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH--GAVPIFVKLLASPSDDIREQAVCALGNVAADSA-RCRDLVL 121 (447)
Q Consensus 45 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~ 121 (447)
.....+.++..+|..+.+.|..++.. +.......+. .+.+.|..-+++.+...+...+.+|..|....+ ...+.+.
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33344443389999999999999984 2222111111 233445555556677778788888887775444 2222222
Q ss_pred hcCCHHHHHHHhccccchhHHHHHHHHHHHhc--CCC----CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFC--AGK----PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
. .++.++-.+ ++.+...++.+..+|..++ ... .++....+...++.+...+-.....+....+-++..+..
T Consensus 738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 1 244444444 6667788888888888887 221 222244456666666665544444444443556665553
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228 196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275 (447)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l 275 (447)
...+....-.-.++++.+..+|.+.+..++..|+..+..++..-+...-......+++.+..+++.. ...+|..+-..+
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL 893 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 3222212222235677888889999999999999999999987765433333335778888877776 788888888888
Q ss_pred HHHhc-CCHHHHHHHHH
Q 013228 276 SNITA-GNSEHIQAVID 291 (447)
Q Consensus 276 ~nl~~-~~~~~~~~l~~ 291 (447)
-.++. .+.+..+.++.
T Consensus 894 ekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHhCHHHHHhhCH
Confidence 87776 34455555554
No 147
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.53 E-value=0.005 Score=48.18 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=101.5
Q ss_pred HHHHHhCcHHHHHHhcCCCC------chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-chhHHHHHHHH
Q 013228 202 QAVIEAGVCPRLVELLGHPS------PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWT 274 (447)
Q Consensus 202 ~~~~~~~~~~~L~~lL~~~~------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~ 274 (447)
..++..+++..|++.+.++. ..+...++.++..|..+.. .....+...++..+...+.... +..+...+...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45788899999999997755 3666778888888877543 2334555667778888887553 68889999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHH
Q 013228 275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYL 332 (447)
Q Consensus 275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 332 (447)
|-+++..++...+.+.+.=-++.|+..++..+++++.+|...+..+..+.++..++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999988877666666666799999999999999999999988888887766655543
No 148
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.52 E-value=0.045 Score=51.73 Aligned_cols=300 Identities=16% Similarity=0.104 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHHHHHHccCCCCc----hhhhhccCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHHcCCChh-hHHH
Q 013228 9 DNNMQLEATTHIRKLLSNARSAP----TEEVIPFGVVPRFVEFLMRE----D--YPQLQFEAAWALKNIVSGTSE-DTKV 77 (447)
Q Consensus 9 ~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~~~v~~L~~ll~~~----~--~~~v~~~a~~~L~~l~~~~~~-~~~~ 77 (447)
+.+.....+..+..+........ .....+..+++.+.++.... . ++.+...+...+..+...-+. ....
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566667777777766532222 22333445778887765322 1 145566666666666553332 2333
Q ss_pred HHhCCChHHHHHhhC----------CCC--HHHHHHHHHHH-HHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHH
Q 013228 78 VIDHGAVPIFVKLLA----------SPS--DDIREQAVCAL-GNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRI 144 (447)
Q Consensus 78 ~~~~~~i~~L~~ll~----------~~~--~~i~~~a~~~L-~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 144 (447)
+. ..+..+.. ..+ ..........+ +-++.-++.+.-. .....+..++.......++..+..
T Consensus 136 ~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~ 209 (415)
T PF12460_consen 136 IL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLA 209 (415)
T ss_pred HH-----HHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHH
Confidence 32 22333221 111 11122222222 2223222222100 111246677777766667788888
Q ss_pred HHHHHHHhcCCCCCCChhhHhhhHHHHHHhh-ccCChhHHHHH----HHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 013228 145 ATWTLSNFCAGKPKPIFDQVRPALPALAQLV-HSNDKEVMTDA----CRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH 219 (447)
Q Consensus 145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a----l~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 219 (447)
++.+++.+...-+... ....++..+...+ ...++..+..+ .|...-+......... ..+..|+.++.+
T Consensus 210 ~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~ 282 (415)
T PF12460_consen 210 ALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS 282 (415)
T ss_pred HHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC
Confidence 8898888886532222 3345555555544 33333333333 4444444433322222 346778888876
Q ss_pred CCchhHhHHHHHHHHhhcCCh--------hhHHHHHhc----CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 013228 220 PSPSVLTRALQTVVNIAAGDD--------FQTQCIINC----GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287 (447)
Q Consensus 220 ~~~~v~~~a~~~l~~l~~~~~--------~~~~~~~~~----~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~ 287 (447)
+.+...+.+.++-+....+ ...+.+.+. ..+|.+++..+.. +...|.....+|+++..+-|..+-
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH
Confidence 6677888888888876522 122223332 3566777777766 666888888999999886554331
Q ss_pred HHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 288 ~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~ 324 (447)
.---..++|.+++.|..++.+++..++.+|..+....
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 1111348999999999999999999999999998864
No 149
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.52 E-value=0.00099 Score=47.91 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=57.9
Q ss_pred hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013228 224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVID 291 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 291 (447)
++...+++|+|++..++.....+.+.|+++.++.... +..++.+|+.|.+++.|++.+++++.+.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4667889999999999999999999999999988764 3338999999999999999999887666554
No 150
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.50 E-value=0.032 Score=55.22 Aligned_cols=238 Identities=16% Similarity=0.140 Sum_probs=152.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcC
Q 013228 46 EFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEE 124 (447)
Q Consensus 46 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~ 124 (447)
..+.....|.....+.+++...+.....+...+ . -++...+..+. +..+.++-.++++++..|.... +... ..+
T Consensus 456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~~--~p~ 530 (1005)
T KOG2274|consen 456 NGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLSL--QPM 530 (1005)
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-cccc--chH
Confidence 334444447777799999987776322222211 1 12334444443 4567788888888888873221 1111 223
Q ss_pred CHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHHHH
Q 013228 125 ALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDEIQ 202 (447)
Q Consensus 125 ~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~ 202 (447)
++..++++. ...+.++......+|+..+..+|.........+.|..+.++. ++||.+...+-.++-.++......
T Consensus 531 ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-- 607 (1005)
T KOG2274|consen 531 ILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-- 607 (1005)
T ss_pred HHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--
Confidence 455566655 566678888899999999998877777777888888777643 557777776666666666422111
Q ss_pred HHHHhCcHHHHHHhcCCCC----chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228 203 AVIEAGVCPRLVELLGHPS----PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI 278 (447)
Q Consensus 203 ~~~~~~~~~~L~~lL~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl 278 (447)
.-.....+|.+++.|..+. ......++..|..+.++.+.-....+-.-++|.+.++.-++.+...-..+..||..+
T Consensus 608 g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 608 GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRAL 687 (1005)
T ss_pred cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence 1223357899999997765 556667788888777766543333333457778888776665888888899999988
Q ss_pred hcCCHHHHHHHHH
Q 013228 279 TAGNSEHIQAVID 291 (447)
Q Consensus 279 ~~~~~~~~~~l~~ 291 (447)
...+.++....-.
T Consensus 688 Is~~~eq~~t~~~ 700 (1005)
T KOG2274|consen 688 ISVTLEQLLTWHD 700 (1005)
T ss_pred HhcCHHHHHhhcc
Confidence 8866665544433
No 151
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.47 E-value=0.0085 Score=49.16 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=75.4
Q ss_pred chhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 013228 138 KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL 217 (447)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL 217 (447)
++.++.+++.+++.|+... .......+|.+...|+++++.||..|+.++.++...+--.. +..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 4678889999999998654 23457788999999999999999999999999986543322 223447788889
Q ss_pred CCCCchhHhHHHHHHHHhhcC
Q 013228 218 GHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 218 ~~~~~~v~~~a~~~l~~l~~~ 238 (447)
.++++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 152
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.47 E-value=0.00037 Score=41.28 Aligned_cols=39 Identities=41% Similarity=0.472 Sum_probs=35.4
Q ss_pred HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 284 EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 284 ~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
+....+.+.|+++.|+.++.+++++++..++++|.|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467788899999999999999999999999999999863
No 153
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.46 E-value=0.01 Score=48.67 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=75.1
Q ss_pred CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Q 013228 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300 (447)
Q Consensus 221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ 300 (447)
++.+|..++.+++-++...+...+ ..++.+...|.++ ++.+|+.|+.++..|...+.-- ++..++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence 467899999999999987765444 4678999999999 9999999999999997643110 12224477788
Q ss_pred HHhcCchhHHHHHHHHHHHhcCCC
Q 013228 301 LLQNAEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 301 ~l~~~~~~v~~~a~~aL~~l~~~~ 324 (447)
++.+++++++..|..++..+....
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhc
Confidence 888999999999999999998863
No 154
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.44 E-value=0.00083 Score=48.31 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC
Q 013228 142 LRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS 221 (447)
Q Consensus 142 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~ 221 (447)
+..++.+|...+..-+.........++|.++..+.++|..||..|+.+|.|++.......-. .-..+++.|.+++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence 44566777777665545555566889999999999999999999999999999654332211 12367889999999999
Q ss_pred chhHhHHHHHHHHh
Q 013228 222 PSVLTRALQTVVNI 235 (447)
Q Consensus 222 ~~v~~~a~~~l~~l 235 (447)
+.|+..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9988777 444333
No 155
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.35 E-value=0.014 Score=45.82 Aligned_cols=127 Identities=12% Similarity=0.157 Sum_probs=97.6
Q ss_pred HHHHHhcCChHHHHHhhccCCc-----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHH
Q 013228 243 TQCIINCGALPYLLGLLIHNHK-----KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAAR 315 (447)
Q Consensus 243 ~~~~~~~~~l~~l~~~l~~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~ 315 (447)
...++..+++..|++++.++.. ......+..++..+..++--.+ ..+...++.++..+++.. +..+.+.+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4568889999999999988732 3555666677777766542223 445556888888888843 6889999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228 316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK 371 (447)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 371 (447)
.|-++..+ ++.....+.+.=.++.|+..|...+++++..++..+..++...+..+
T Consensus 83 ILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 83 ILESIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 99999986 45555666666679999999999999999999999999998776654
No 156
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.32 E-value=0.31 Score=51.49 Aligned_cols=393 Identities=8% Similarity=0.002 Sum_probs=195.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
+..+..+-..+|-.|+++|..+....+.-.....++.++.. -+.+.. ..||+.|+..++...-..++....+.
T Consensus 822 l~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R~~Dss-asVREAaldLvGrfvl~~~e~~~qyY-- 894 (1692)
T KOG1020|consen 822 LSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----RLNDSS-ASVREAALDLVGRFVLSIPELIFQYY-- 894 (1692)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----hhccch-hHHHHHHHHHHhhhhhccHHHHHHHH--
Confidence 45677777899999999999999874222222223333322 234455 69999999999987766666655444
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc--chhHHHHHHHHHHHhcCCCCCC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA--KLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
..+..-+.++...+|..+++.+..+|...|.+... +.....++.+.. ...++.-++.++..+...+...
T Consensus 895 ---~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 895 ---DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred ---HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence 34566666778899999999999999877765322 334445554333 3348888999999988776222
Q ss_pred --ChhhHhhhHH-------HHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhc----------
Q 013228 160 --IFDQVRPALP-------ALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA---GVCPRLVELL---------- 217 (447)
Q Consensus 160 --~~~~~~~~l~-------~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL---------- 217 (447)
.......-++ .-+.+.....+.+....+..=..... ....+.+... ..+..+...+
T Consensus 966 ~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~--~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~ 1043 (1692)
T KOG1020|consen 966 VNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTM--KESVKPVALAKVTHVLNLLTHCLVEKISEVESD 1043 (1692)
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhh--hhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH
Confidence 1111111111 11122223334443333322211110 0001111111 1122222222
Q ss_pred --CCCCchhH-hHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 013228 218 --GHPSPSVL-TRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN----HKKSIKTDACWTISNITAGNSEHIQAVI 290 (447)
Q Consensus 218 --~~~~~~v~-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~ 290 (447)
..++..++ ...+.+|.-++...|.. +....+..|...|.+. ....+..+.+.++-...---+.--+.+.
T Consensus 1044 ~~~~~~~~~~~~~~lstL~~FskirP~L----lt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL 1119 (1692)
T KOG1020|consen 1044 DMNEEESEVRLLAYLSTLFVFSKIRPQL----LTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFL 1119 (1692)
T ss_pred hhhcccchhHHHHHHHHHHHHHhcCchh----ccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHH
Confidence 12223333 34455666666655522 2223344455555543 1233334444444333221101011111
Q ss_pred HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC--CCHHHHHHHHH--cCChHHHHhhccCC----CHHHHHHHHHHHHH
Q 013228 291 DAGLIGPLVNLLQNAEFDIKNWAARAISNATFG--GTHEQIKYLVR--EGCIKPLCDLLLCA----DPEIVTVFLKGLEK 362 (447)
Q Consensus 291 ~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~--~~~l~~L~~ll~~~----~~~~~~~a~~~l~~ 362 (447)
. .+=+.|+.++-.........|..+++.++.. .+......+.. .+.++.+-.--.+. ........+.+++-
T Consensus 1120 ~-sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~ 1198 (1692)
T KOG1020|consen 1120 A-SLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGL 1198 (1692)
T ss_pred H-HHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHH
Confidence 1 1333455555545556666777777777763 22222222211 01122221111111 11334455666666
Q ss_pred HHHhhhhhhhhhhhcccccH-HHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 363 ILKVGEAEKNMDIAIGDVNQ-YAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 363 l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
+++++........ +..+- ... ....+.+..|.-+..+.+.+++.+|...+..+|-
T Consensus 1199 l~Ryfdf~~~~~~--g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci 1254 (1692)
T KOG1020|consen 1199 LSRYFDFPKPSND--GKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFICI 1254 (1692)
T ss_pred HHHhccCCCccCC--Cccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 6664433221110 11111 122 2236667777777777788899998888887663
No 157
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.25 Score=50.31 Aligned_cols=337 Identities=13% Similarity=0.122 Sum_probs=180.7
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
.+.+++.|..++=.|+..+.++++..+....+. ++...+.++.-.+++..-..++-+|+.++...--....+.
T Consensus 347 ls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~-- 419 (1133)
T KOG1943|consen 347 LSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE-- 419 (1133)
T ss_pred HHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH--
Confidence 457888899999999999999998753222333 4555666555444356667899999999873222111111
Q ss_pred CChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCChhH--HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHH
Q 013228 82 GAVPIFVKLLAS--------PSDDIREQAVCALGNVAADSARC--RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSN 151 (447)
Q Consensus 82 ~~i~~L~~ll~~--------~~~~i~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~ 151 (447)
.+++.++..+.- ....+|..|+.+++.+++..... +. +. ......++..-.-+.+...++.|..++..
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l-~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VL-QSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HH-HHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 345556555532 34689999999999998543321 11 10 11122222222256677889998888877
Q ss_pred hcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCchhHhHHHH
Q 013228 152 FCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL-LGHPSPSVLTRALQ 230 (447)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~ 230 (447)
.....++.. .+++ |+...+.-....+.++-..++.-....+..... ++..++.. +.+=+..++..+.+
T Consensus 498 ~VGR~~n~p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~-----~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 498 NVGRQGNFP-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREP-----VFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HhccCCCCC-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHH-----HHHHHHhcccccccHHHHHHHHH
Confidence 665432221 1222 111111111222333322222211112222221 22222222 45567889999999
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH---HHHHHHH---cC---ChHHHHHH
Q 013228 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE---HIQAVID---AG---LIGPLVNL 301 (447)
Q Consensus 231 ~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~---~~~~l~~---~~---~~~~L~~~ 301 (447)
+|.+++...++ ....+.++.+++...++ +...+.-...+.+.+...... ....+.+ .+ +++.+...
T Consensus 567 aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~ 641 (1133)
T KOG1943|consen 567 ALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDR 641 (1133)
T ss_pred HHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHH
Confidence 99998876553 33446788888888777 777777666555555432111 1111111 12 23333332
Q ss_pred H-hcC-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228 302 L-QNA-EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 302 l-~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~ 365 (447)
. ..+ ..-.+...+..+.++.....+ ....+.-.+.-..+.+.+.+.+ .++..+.+++..++.
T Consensus 642 ~~~rg~~~lmr~~~~~~Ie~~s~s~~~-~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 642 YFYRGQGTLMRQATLKFIEQLSLSKDR-LFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred HhccchHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 2 222 245566667777777765432 2222222233444444553444 778888888877765
No 158
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.0084 Score=60.81 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=118.8
Q ss_pred hhhHhhhHHHHHHhhc----cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHh
Q 013228 161 FDQVRPALPALAQLVH----SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNI 235 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~----~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l 235 (447)
......+.|.++...+ .++|+++..|--+++.+..-+.... + .-++.|+..+. ++++.+|..+.-+++-+
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc----e-s~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC----E-SHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH----H-HHHHHHHHHHhcCCCceeeecchheccch
Confidence 3344667888888885 4579999999999999886554332 2 34788999996 79999999999999999
Q ss_pred hcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHH
Q 013228 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR 315 (447)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~ 315 (447)
+...+...+ ..-+.|...|.+. ++.+|+.|..++++|...+ .+--.|.+..+..++.+++..++..|-.
T Consensus 989 av~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 989 AVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred hhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence 876664443 3556889999999 9999999999999997643 2334789999999999999999999998
Q ss_pred HHHHhcCCCC
Q 013228 316 AISNATFGGT 325 (447)
Q Consensus 316 aL~~l~~~~~ 325 (447)
.+..++..++
T Consensus 1058 FF~Els~k~n 1067 (1251)
T KOG0414|consen 1058 FFKELSSKGN 1067 (1251)
T ss_pred HHHHhhhccc
Confidence 8888887664
No 159
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.27 E-value=0.027 Score=47.02 Aligned_cols=145 Identities=13% Similarity=0.145 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHcC-CChhhHHHHHhCCCh
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----EDYPQLQFEAAWALKNIVS-GTSEDTKVVIDHGAV 84 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i 84 (447)
..-...|+..|..++++ ++.+..+.++.+--.+-.+|.. ...+-+|..++.+++.+.. ++.+....+...+++
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 34456777778888887 7888888887665555555543 2347889999999999987 345566778888999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH------HH-hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDL------VL-SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK 156 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~------~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (447)
+..++.++.+++..+..|+.++..+..++....-. +. -...+..++..+.+.++..+..++..+...|+.+.
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999988776543221 11 12235555666656777888888888888888764
No 160
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.20 E-value=0.034 Score=47.36 Aligned_cols=187 Identities=12% Similarity=0.157 Sum_probs=119.7
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhc-------CCCC--chh---HhHHHHHHHHhhcCChhhHHH
Q 013228 179 DKEVMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELL-------GHPS--PSV---LTRALQTVVNIAAGDDFQTQC 245 (447)
Q Consensus 179 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL-------~~~~--~~v---~~~a~~~l~~l~~~~~~~~~~ 245 (447)
+++.++.|+.-|+.--+..++..-.+..+ |.+..|++=+ ..+. ... .-.|+..+..++. +++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 56778888877776655544443334443 6666554433 2222 111 2234444455555 5567778
Q ss_pred HHhcCChHHHHHhhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 246 IINCGALPYLLGLLIHNH----KKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 246 ~~~~~~l~~l~~~l~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
++++++.-.|..+|.... -+.+|-.+.++++.+.. ++++.+..+.+.+++|..++.++.++.-.+..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999888888886541 35678889999999987 5778889999999999999999999988888899998888
Q ss_pred cCCCCHHHHHHHHH--------cCChHHHHh-hccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 321 TFGGTHEQIKYLVR--------EGCIKPLCD-LLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 321 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
... .....++.. ..++..++. +.+..++.+.+.++.+..++.++..
T Consensus 167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 773 333333221 113333333 3456778888888888888876544
No 161
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.079 Score=51.19 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 013228 140 SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH 219 (447)
Q Consensus 140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 219 (447)
.+.+.+...+..+-..+ .....+.+.+..+++...+++..|+..++..|..++...... ...+-.++...+...+.+
T Consensus 61 RIl~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhc
Confidence 45555555555554332 222255777777888888999999999999999888643322 223334677888888889
Q ss_pred CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228 220 PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS 276 (447)
Q Consensus 220 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~ 276 (447)
..+.||..|+.+|+.+-....+. +..+...+..+++...+++||+.|...+.
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 99999999999999886322111 12456678888887669999998865543
No 162
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.11 Score=43.98 Aligned_cols=243 Identities=17% Similarity=0.186 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc
Q 013228 55 QLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN 134 (447)
Q Consensus 55 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~ 134 (447)
.-+..|+..|.++... +.+..+.+...+++...+...+.+|+..... ..++.++..+.
T Consensus 20 ~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-----------~Av~~l~~vl~ 77 (289)
T KOG0567|consen 20 QNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-----------DAVPVLVEVLL 77 (289)
T ss_pred HHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-----------hhhHHHHHHhc
Confidence 3345566666655541 1245555555555555566666666665422 24666666663
Q ss_pred cc-cchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH----HH-----
Q 013228 135 KH-AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ----AV----- 204 (447)
Q Consensus 135 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~----~~----- 204 (447)
.. ..+-++..|..+|..+.. ...++.+-+..+++...+++.+..++..+-..+..... ..
T Consensus 78 desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdP 147 (289)
T KOG0567|consen 78 DESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDP 147 (289)
T ss_pred ccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCC
Confidence 22 234455567777776652 23455555666666666666666666554421110000 00
Q ss_pred ---HHhCcHHHHHHhc-CCCCc-hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228 205 ---IEAGVCPRLVELL-GHPSP-SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNIT 279 (447)
Q Consensus 205 ---~~~~~~~~L~~lL-~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~ 279 (447)
...+-+..+-..| ..+.+ --|..|++.|.|+-. + ..+..+.+-+..+ +.-.|.+++++++.+-
T Consensus 148 a~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 148 APPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-SALFRHEVAFVFGQLQ 215 (289)
T ss_pred CCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-hHHHHHHHHHHHhhcc
Confidence 0001122222222 22222 223345555544321 1 1244566777777 8899999999999984
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228 280 AGNSEHIQAVIDAGLIGPLVNLLQ--NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL 357 (447)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~L~~~l~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~ 357 (447)
+. . .+|.|.+.|. .+++-+|.+|+.||+.++.. + .++.|.+++++..+-+++.|.
T Consensus 216 s~--~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~e~~~D~~~vv~esc~ 272 (289)
T KOG0567|consen 216 SP--A---------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLKEYLGDEERVVRESCE 272 (289)
T ss_pred ch--h---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHHHHcCCcHHHHHHHHH
Confidence 42 2 5666777766 35889999999999999752 2 477778888888888888777
Q ss_pred HHHHHHH
Q 013228 358 KGLEKIL 364 (447)
Q Consensus 358 ~~l~~l~ 364 (447)
-+|.-+-
T Consensus 273 valdm~e 279 (289)
T KOG0567|consen 273 VALDMLE 279 (289)
T ss_pred HHHHHHH
Confidence 6666543
No 163
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.033 Score=54.44 Aligned_cols=220 Identities=15% Similarity=0.104 Sum_probs=145.1
Q ss_pred HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH-HhcCCCCCCChhhHhhhHHHHHHhhccCC-hhHHHHHHHHHHHhc
Q 013228 117 RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS-NFCAGKPKPIFDQVRPALPALAQLVHSND-KEVMTDACRALFYLS 194 (447)
Q Consensus 117 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~v~~~al~~l~~l~ 194 (447)
+...++.|+...++.+. ....+..+.....+|. .+... ......+++.+...+.... ..-...++.++.|++
T Consensus 497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f~-----~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDFP-----GERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCCC-----CCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 34455678888888888 4444566666666666 22111 1112344554444444332 222345788999999
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHhhccCCchhHHHHHHH
Q 013228 195 EGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN-CGALPYLLGLLIHNHKKSIKTDACW 273 (447)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~v~~~a~~ 273 (447)
..++...+.+.+.-.++.+-.++..+++..+..++..+.||.-+..-....+.+ ...++.....+... +.....+++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 777665566888777788888888899999999999999999877766666666 34556666666665 7777777777
Q ss_pred HHHHHhcCCHHHHHH-HHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhh
Q 013228 274 TISNITAGNSEHIQA-VIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDL 344 (447)
Q Consensus 274 ~l~nl~~~~~~~~~~-l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 344 (447)
++..++.-....+.. .--......+..++.++++.++......+.|+... ..+....+.....++.+...
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhccchHHHHHHHH
Confidence 777666644444442 22345778888999999999999999999885443 44445555554445444443
No 164
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.15 E-value=0.043 Score=49.26 Aligned_cols=195 Identities=16% Similarity=0.203 Sum_probs=120.7
Q ss_pred HHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHH--hcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC--CHHHH
Q 013228 211 PRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCII--NCGALPYLLGLLIHNHKKSIKTDACWTISNITAG--NSEHI 286 (447)
Q Consensus 211 ~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~--~~~~~ 286 (447)
.-.+..+.+.+...|..++..+.++...... .+.+. ...+++.+.+.++.+ ..+-+..|+.+++-++.. .....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3444555666788899999888888754321 12121 124677888888887 555666677777766553 22334
Q ss_pred HHHHHcCChHHHHHHHhcC--chhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCChHHH--HhhccC----------CCH
Q 013228 287 QAVIDAGLIGPLVNLLQNA--EFDIKNWAARAISNATFG--GTHEQIKYLVREGCIKPL--CDLLLC----------ADP 350 (447)
Q Consensus 287 ~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L--~~ll~~----------~~~ 350 (447)
..+++. +.|.|...+..+ ...+|..++.+|+-++.. .+.+......+ .++.+ ....+. +++
T Consensus 124 ~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 455554 788888888855 345666666666655432 23333331111 23311 122221 235
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 013228 351 EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGRV 423 (447)
Q Consensus 351 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 423 (447)
.+...|+.+..-|+...+... +...+ ...++.|..++.+++.+|+..|-+.|.-+|+...
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~-----------~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSK-----------LEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 789999999988886554422 22222 3347899999999999999999999998887555
No 165
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.017 Score=56.70 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=144.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 013228 42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL 121 (447)
Q Consensus 42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 121 (447)
...+..+.++. +.++..++..|..+... .+....+...+++...+..+++.++-+--+|+..+..||..-+
T Consensus 730 qeai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------- 800 (982)
T KOG4653|consen 730 QEAISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------- 800 (982)
T ss_pred HHHHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-------
Confidence 33444455666 78899999999999983 3556667777899999999999999999999999999985433
Q ss_pred hcCCHHHHHHHhccccc---hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228 122 SEEALIPLLTQLNKHAK---LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 122 ~~~~l~~l~~~l~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~ 198 (447)
..+++.+...-.+..+ .+.+-..-.++.++..............++...+...++++...+..++..+++++....
T Consensus 801 -e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 -EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred -hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 3456666664422211 233334446666666554333344445666677777888888899999999999985433
Q ss_pred HHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHHh---cCChHHHHHhhccCCchhHHHHHHHH
Q 013228 199 DEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCIIN---CGALPYLLGLLIHNHKKSIKTDACWT 274 (447)
Q Consensus 199 ~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~l~~l~~~l~~~~~~~v~~~a~~~ 274 (447)
......+ ..++..++.+. .+++..+|+.|+..+..+..+.....-.+.. ......+....+...+..++..++.+
T Consensus 880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 2222111 12344444554 4567889999999999888766533222221 12333444444444355566666655
Q ss_pred HHHH
Q 013228 275 ISNI 278 (447)
Q Consensus 275 l~nl 278 (447)
+-.+
T Consensus 959 leei 962 (982)
T KOG4653|consen 959 LEEI 962 (982)
T ss_pred HHHH
Confidence 5443
No 166
>PRK14707 hypothetical protein; Provisional
Probab=97.14 E-value=0.59 Score=51.29 Aligned_cols=355 Identities=16% Similarity=0.093 Sum_probs=205.9
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHH
Q 013228 41 VPRFVEFL-MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCR 117 (447)
Q Consensus 41 v~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~ 117 (447)
+..+++.+ +.+++.+.+..+......++. .+..+..+ +..+|..++..+.. +++..+..+...-..++.+ ...+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 44555555 345545666665555555655 44444444 44556667776665 4566665555555566655 4444
Q ss_pred HHHHhcCCHHHHHHHhccccchhHHHH-HHHHHHHhcCCCCCCChhhH-hhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 118 DLVLSEEALIPLLTQLNKHAKLSMLRI-ATWTLSNFCAGKPKPIFDQV-RPALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
..+.. ..+-..++.|.+-++..+=.. +.+.-..+..+. ....... .++-..+-.+-+.++..+...+...|..-..
T Consensus 242 ~~~~~-q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELKP-QELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCCh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 44433 345566666656666544444 444444555443 3322222 3444444555567777777666665554333
Q ss_pred CCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHH
Q 013228 196 GTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWT 274 (447)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~ 274 (447)
.+....+.+ +...+...+.-| +-++..+-..+...|..-...++...+ -++...+..++..++.-.+..+...++..
T Consensus 320 ~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 320 DDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred ccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 344443333 233344444444 446666666666666554444554444 34455666666767654467777777777
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHH
Q 013228 275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVT 354 (447)
Q Consensus 275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~ 354 (447)
|..=..++++..+.+-..|+-..|-.+-+-++..+...++.+|.--... +++.++-|--.++...|-.+-+.+|..+..
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 7655456667666666666666555555578888888888888765554 566666665556555666666778877766
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228 355 VFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE 416 (447)
Q Consensus 355 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (447)
.+.+.|..=+..... ++..|.-.+....|..|...++......|..-+.
T Consensus 477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA 525 (2710)
T PRK14707 477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALA 525 (2710)
T ss_pred HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 666666655543332 3666777777788888888777665555544443
No 167
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.11 E-value=0.046 Score=46.57 Aligned_cols=195 Identities=14% Similarity=0.072 Sum_probs=120.2
Q ss_pred CchhHhHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHh-------hccCC-chhHHHHHHHHH---HHHhcCCHHHHHH
Q 013228 221 SPSVLTRALQTVVNIAAGDDFQTQCIINC-GALPYLLGL-------LIHNH-KKSIKTDACWTI---SNITAGNSEHIQA 288 (447)
Q Consensus 221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~l~~~-------l~~~~-~~~v~~~a~~~l---~nl~~~~~~~~~~ 288 (447)
+++.|..|+.-|+.--...++..-.+... |.+..|++= +..+. ....-...|.+| ..+++ .++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 44556666666665544444444444443 444444332 22220 122223334443 35544 5678889
Q ss_pred HHHcCChHHHHHHHhcC-----chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 013228 289 VIDAGLIGPLVNLLQNA-----EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKI 363 (447)
Q Consensus 289 l~~~~~~~~L~~~l~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l 363 (447)
+++.++.-.|..+++.. -+.+|.....+++.+...++++...++.+.++++...+.++.++.-.+..|..++.++
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99998877777777732 3678999999999999998999999999999999999999999888888899999999
Q ss_pred HHhhhhhhhhhhhcccccHHHHHHHHhchHHH-HHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228 364 LKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK-IENLRSHDNDEIHEKSVKILETYWCGR 422 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (447)
+..+....-.+. ..-+...-...+.. +..+...+++.+-+...++..++.+..
T Consensus 167 L~dd~GL~yiC~------t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 167 LLDDVGLNYICQ------TAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHSHHHHHHHTS------SHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HcchhHHHHHhc------CHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 987766543322 11222222223333 445677888888777666666665433
No 168
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.029 Score=52.62 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=104.1
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCchhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228 170 ALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL-LGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN 248 (447)
Q Consensus 170 ~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 248 (447)
.+-+++.+.++-++.....++.---.... ..+++..++.. .++.+.++|+.|.-+|+-+|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 56677788888888777766543222221 23567777777 678899999999999998887554
Q ss_pred cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHH
Q 013228 249 CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQ 328 (447)
Q Consensus 249 ~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~ 328 (447)
..+...+++|..+.+..+|...+.+|+-.|.++..+. .+..|-.++.+...-||+.|+.+++-+...++++.
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 3455677777766689999999999998888654322 34445555666778899999999988887665543
Q ss_pred HHHHHHcCChHHHHhhccCC
Q 013228 329 IKYLVREGCIKPLCDLLLCA 348 (447)
Q Consensus 329 ~~~l~~~~~l~~L~~ll~~~ 348 (447)
.... .++.+.+.+.+.+.
T Consensus 657 np~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 657 NPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred ChhH--HHHHHHHHHHHhhh
Confidence 2222 12444555554443
No 169
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.092 Score=48.56 Aligned_cols=269 Identities=14% Similarity=0.104 Sum_probs=141.0
Q ss_pred CCChHHHHHhh----CCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 81 HGAVPIFVKLL----ASPSDDIREQAVCALGNVAADSA-RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 81 ~~~i~~L~~ll----~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
.|.+.-++..+ .+++..++..|++.|+|.+...| .++.. ....+..++..|..+.+.++.-.+..+|..+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 35454444433 34778999999999999998743 33322 2335777788776777888998888888877755
Q ss_pred CCCCChh-hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH-HHHH--hCcHHHHHHhcCCCCchhHhHHHHH
Q 013228 156 KPKPIFD-QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ-AVIE--AGVCPRLVELLGHPSPSVLTRALQT 231 (447)
Q Consensus 156 ~~~~~~~-~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~-~~~~--~~~~~~L~~lL~~~~~~v~~~a~~~ 231 (447)
....... ..-++.-.+..+..+.+++.+..+...++.++.......+ .+.+ .+....++-.+.++++.+ ..||+.
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~ 409 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRS 409 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHH
Confidence 4222222 1234444567788899999999998888877743222112 2221 122333444456666655 345555
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228 232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKT-DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK 310 (447)
Q Consensus 232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~-~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~ 310 (447)
....+..+- .++... ++++. .+ ...-...+. ..-|++ .+....++....+... ..-++++.-+.+|
T Consensus 410 ~~~~c~p~l-~rke~~--~~~q~---~l-d~~~~~~q~Fyn~~c~-~L~~i~~d~l~~~~t~-----~~~~f~sswe~vr 476 (533)
T KOG2032|consen 410 ELRTCYPNL-VRKELY--HLFQE---SL-DTDMARFQAFYNQWCI-QLNHIHPDILMLLLTE-----DQHIFSSSWEQVR 476 (533)
T ss_pred HHHhcCchh-HHHHHH--HHHhh---hh-HHhHHHHHHHHHHHHH-HHhhhCHHHHHHHHHh-----chhheecchHHHH
Confidence 555443222 122111 12221 11 110111111 111211 2222333433332222 1222333333444
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228 311 NWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 311 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~ 365 (447)
..+...-.+...+-.+..+...-..-....+-.+..++-++++..+.+++..+..
T Consensus 477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 4444433444333333333333222345566667778888999999998887754
No 170
>PRK14707 hypothetical protein; Provisional
Probab=97.06 E-value=0.7 Score=50.74 Aligned_cols=388 Identities=15% Similarity=0.081 Sum_probs=207.8
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF 87 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 87 (447)
++.+.+..+......+++. ......+-.+|+...|-.+-+-+++++. ..++..|.....+.+..+..+- ...+...
T Consensus 177 ~~~~c~~aa~~la~~~~~~--d~~~~~~~~q~ia~~lNa~sKWp~~~~c-~~aa~~la~~l~~~~~l~~~~~-~q~va~~ 252 (2710)
T PRK14707 177 DNPDCQAVAPRFAALVASD--DRLRSAMDAQGVATVLNALCKWPDTPDC-GNAVSALAERLADESRLRNELK-PQELGNA 252 (2710)
T ss_pred CCchHHHHHHHHHHHhcCC--hhhhcccchHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHcCcHHHHHhCC-hHHHHHH
Confidence 3444444444443344333 3334444444444444444456774444 4555555555443455444443 3345555
Q ss_pred HHhhCC-CCH-HHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH-HhcCCCCCCChhhH
Q 013228 88 VKLLAS-PSD-DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS-NFCAGKPKPIFDQV 164 (447)
Q Consensus 88 ~~ll~~-~~~-~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~ 164 (447)
+..|.. ++. ..+..+..+-..++ +.+..+..+-.. .+...++-|.+-++..+-+.+...|. .|.. .+.......
T Consensus 253 lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~~ 329 (2710)
T PRK14707 253 LNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKALN 329 (2710)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhccc
Confidence 555554 544 44444444444555 444455554332 35555666666777666555544444 4444 333333333
Q ss_pred -hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhh
Q 013228 165 -RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQ 242 (447)
Q Consensus 165 -~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~ 242 (447)
.++-..|-.+-+-+|..+...+...|..-...++...+.+ +..++...+.-+ +-++..+-..+...|..-...+.+.
T Consensus 330 ~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l 408 (2710)
T PRK14707 330 ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLEL 408 (2710)
T ss_pred hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhh
Confidence 3333344444556777776666666654444444444433 334455555555 4477677677777776655556655
Q ss_pred HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 243 ~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
.+ -++...+.-.+..|..-.+..+...++..|.--..++.+.++.+--.++...|-.+-+-+|..+...++..|..-..
T Consensus 409 ~~-~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 409 RK-GLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred hh-hcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 44 44556666666666655477777777777765555666655544444444444344445777777777777764433
Q ss_pred CCCHHHHHHHHHcCChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228 323 GGTHEQIKYLVREGCIKPLCDLLLCADPE-IVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS 401 (447)
Q Consensus 323 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~ 401 (447)
. +++..+.|--.++...|-.+-+.++.. ....+.++-..+..- ......|...+....+..+..
T Consensus 488 ~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~--------------~~l~~~~~~~~~~~~lnalSK 552 (2710)
T PRK14707 488 H-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE--------------LQLRKAFDAHQVVNTLKALSK 552 (2710)
T ss_pred c-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc--------------hhhhhhhhhHHHHHHHHhhhc
Confidence 3 445555554445555565566666643 333444444444321 113455566666677777777
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 013228 402 HDNDEIHEKSVKILETYW 419 (447)
Q Consensus 402 ~~~~~v~~~a~~~l~~~~ 419 (447)
.+..+..+.|..-|...+
T Consensus 553 wp~s~~C~~A~~~iA~~l 570 (2710)
T PRK14707 553 WPDKQLCAVAASGLAERL 570 (2710)
T ss_pred CCchhHHHHHHHHHHHHh
Confidence 776666666666555544
No 171
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.06 E-value=0.03 Score=50.26 Aligned_cols=171 Identities=17% Similarity=0.193 Sum_probs=115.5
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-CcHHHHHH
Q 013228 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG-TNDEIQAV 204 (447)
Q Consensus 126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~-~~~~~~~~ 204 (447)
+..++.--..+.+..+++.++.+++-.|--+. ......++.+.+.++.+++.++..++.++..+... ........
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 44444222267788999999999999986542 34456677788888778999999999999988843 22221111
Q ss_pred -------HHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC---CchhHHHHHHHH
Q 013228 205 -------IEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN---HKKSIKTDACWT 274 (447)
Q Consensus 205 -------~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~~v~~~a~~~ 274 (447)
....++..+.+.+.+.+++++..|+..++.|.-...-.. ...++..|+-..-++ .+..+|..-...
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 123577888888988899999999999999875433111 023344444444332 246788888888
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 013228 275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNA 305 (447)
Q Consensus 275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~ 305 (447)
+-..+..++++ +..+...++|.+..+....
T Consensus 180 fp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 180 FPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 88888877665 4555566888888877743
No 172
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.05 E-value=0.0027 Score=46.94 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=58.2
Q ss_pred ChHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHH
Q 013228 337 CIKPLCDLL-LCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415 (447)
Q Consensus 337 ~l~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l 415 (447)
++..|+.+| .+.|+.+...|+.=|..+++.-+.. +..+.+.|+-..+.+|+++++++|+..|...+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 477888888 4467788888999999999876654 67789999999999999999999999999998
Q ss_pred HHhc
Q 013228 416 ETYW 419 (447)
Q Consensus 416 ~~~~ 419 (447)
+++.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 173
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.99 E-value=0.19 Score=45.19 Aligned_cols=197 Identities=13% Similarity=0.114 Sum_probs=124.0
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH--HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC--ChhhH
Q 013228 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI--EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG--DDFQT 243 (447)
Q Consensus 168 l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~--~~~~~ 243 (447)
+...+..+.+...+.|..++..+.++....... +.+. ..-++..+.+.++.+...-+..|+++++-++-. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 444555566667889999999998887543221 2221 124677778888777766667777777776543 22333
Q ss_pred HHHHhcCChHHHHHhhccCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHH--HHhc----------Cch
Q 013228 244 QCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITA---GNSEHIQAVIDAGLIGPLVN--LLQN----------AEF 307 (447)
Q Consensus 244 ~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~--~l~~----------~~~ 307 (447)
..+++ .+.+.|.+.+.++. ...+|..++.+|+-++. ..++.....++ .+..+.. ..+. +++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44554 57788888887652 34566666667765544 33343332222 2221111 1221 135
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 308 DIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
.+...|+.+.+-++...+........ ...++.|..+|++.+.+++.+|-.+|.-+++....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 68888888888887655544344333 24589999999999999999999999999887664
No 174
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.28 Score=45.50 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=74.1
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCchhHhHHHHHHHHhhcCChhhH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE-LLGHPSPSVLTRALQTVVNIAAGDDFQT 243 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~v~~~a~~~l~~l~~~~~~~~ 243 (447)
..++..+..-..+++..++..|++.|.|.+...++........ .+..++. +....+.+|...++.+|..+...-....
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence 3444444445567788999999999999998856554433333 3444444 4455678899999999887764322111
Q ss_pred HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 244 QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 244 ~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
-..+--.+.-.+..++.+. +.++|..+...++.++.
T Consensus 336 l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAK 371 (533)
T ss_pred hhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHH
Confidence 1111112444566777788 89999999888887765
No 175
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.95 E-value=0.047 Score=50.41 Aligned_cols=222 Identities=12% Similarity=0.133 Sum_probs=129.7
Q ss_pred HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHhcCCHHHHHHHhcccc
Q 013228 59 EAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA-RCRDLVLSEEALIPLLTQLNKHA 137 (447)
Q Consensus 59 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~ 137 (447)
.|++.|-.+....+.....+.+.+++..++..++..-....+. .-...-....+ ..+..... ...+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence 4667777777767777888899999999999886522211110 00000000000 00000000 0000 111
Q ss_pred chhHHHHHHHHHHHhcC-CC--C-CCChhhH-hhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 013228 138 KLSMLRIATWTLSNFCA-GK--P-KPIFDQV-RPALPALAQLVHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGV 209 (447)
Q Consensus 138 ~~~~~~~a~~~L~~l~~-~~--~-~~~~~~~-~~~l~~l~~ll~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 209 (447)
...+.+..+.++..+.. .. . ..+.... ..++..|...+++. -+.+...++..+..+..+.+.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 12344444455555554 22 1 1111222 34555566667655 3788899999999999888888888999999
Q ss_pred HHHHHHhcC-C---CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh-HHH-HHHHHH----HHHh
Q 013228 210 CPRLVELLG-H---PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS-IKT-DACWTI----SNIT 279 (447)
Q Consensus 210 ~~~L~~lL~-~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-v~~-~a~~~l----~nl~ 279 (447)
.+.++..+. . ++.++....-.+++.+|- +....+.+.+.+.++.+.+++.++.... ++. ..+..+ -.|.
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~ 231 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM 231 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999887 4 445666666677777776 4456677888999999999998762111 111 233333 4555
Q ss_pred cCCHHHHHHHHH
Q 013228 280 AGNSEHIQAVID 291 (447)
Q Consensus 280 ~~~~~~~~~l~~ 291 (447)
++.|..+..+++
T Consensus 232 RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 232 RHHPSLKPDIID 243 (379)
T ss_pred ccCHHHHHHHHH
Confidence 666665555444
No 176
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.95 E-value=0.093 Score=48.21 Aligned_cols=174 Identities=13% Similarity=0.146 Sum_probs=113.8
Q ss_pred HHHHHHHH-HHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh
Q 013228 97 DIREQAVC-ALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV 175 (447)
Q Consensus 97 ~i~~~a~~-~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll 175 (447)
+-+..|+. ...-+|.++...-+.... ..+..+++.|..+.+...+..|+.+|..++...+..-.....-.+..+++.-
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 34444444 444555554333332211 2466788888666788889999999999999886665555566777777777
Q ss_pred ccCChhHHHHHHHH-HHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHH
Q 013228 176 HSNDKEVMTDACRA-LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPY 254 (447)
Q Consensus 176 ~~~~~~v~~~al~~-l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 254 (447)
.+.++++...|... +.-++.+.+.+. +..+..++...+...-..++..+..++..-....-..+-..+.|.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~ 452 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPC 452 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhH
Confidence 77766665555543 444445554432 334444554466666677777888887654432222233478999
Q ss_pred HHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 255 LLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 255 l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
+++...+. +..||+.|++||..+..
T Consensus 453 ~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 453 VIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 99999999 99999999999988754
No 177
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.23 Score=48.39 Aligned_cols=168 Identities=18% Similarity=0.137 Sum_probs=104.8
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh-hccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 013228 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL-LIHNHKKSIKTDACWTISNITAGNSEHIQA 288 (447)
Q Consensus 210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~-l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 288 (447)
=+.+-+++.+.++-+|...+.+++.--.+.. +.+++..|+.. .++. +.+||+.|+.+|+-++..+++
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~---- 588 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPE---- 588 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChh----
Confidence 3445566677777777777666543222221 22456666666 4455 999999999999999988877
Q ss_pred HHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 289 VIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 289 l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
.+|..+++|. +-++.||.-++-+|+-.+....... .+..|..+..+...-+|..|+-++.-++...
T Consensus 589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 4566777777 4589999999999987776532211 3445555666666678888888777776433
Q ss_pred hhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228 368 EAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE 416 (447)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (447)
.... .++ .. ++.+.+.++.+..+++.-.+--.+|.
T Consensus 656 t~~~-----~pk----v~-----~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 656 TEQL-----CPK----VN-----GFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred cccc-----Cch----HH-----HHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2211 011 12 22345556666666665444444443
No 178
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.052 Score=53.55 Aligned_cols=223 Identities=13% Similarity=0.159 Sum_probs=138.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHh
Q 013228 86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVR 165 (447)
Q Consensus 86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 165 (447)
.-+..+.++-..++-.++..|..+..... ....+...+++...+..+ .+.|+-+.-+|...+..||.-. ..
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy-------~e 801 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVY-------PE 801 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhc-------ch
Confidence 33444556677889999999999987543 234555677888888888 7888888888998888888653 24
Q ss_pred hhHHHHHHh-hccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228 166 PALPALAQL-VHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 166 ~~l~~l~~l-l~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
.++|.+... .... .++.+..+-.++.++...-.+....... .++..++..+++++...|..++..++++|.....
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 566766663 3221 1334444556777766544443322222 4567777778888888899999999999864432
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhc-CchhHHHHHHHHH
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID---AGLIGPLVNLLQN-AEFDIKNWAARAI 317 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~~l~~-~~~~v~~~a~~aL 317 (447)
.....+ ..++..++.+...+....+|+.|+..+..+..+.....-.+.. .+....+..+... ++..++..|+.++
T Consensus 881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 222111 1345556666665558899999999999887754432222221 1223333333332 3444555555554
Q ss_pred HH
Q 013228 318 SN 319 (447)
Q Consensus 318 ~~ 319 (447)
-.
T Consensus 960 ee 961 (982)
T KOG4653|consen 960 EE 961 (982)
T ss_pred HH
Confidence 33
No 179
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.88 E-value=0.21 Score=41.87 Aligned_cols=141 Identities=11% Similarity=0.152 Sum_probs=100.7
Q ss_pred hHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHH
Q 013228 226 TRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN----HKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVN 300 (447)
Q Consensus 226 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ 300 (447)
-.|+..+..+++ +++.+..++++.+--.+..+|... ..+.+|-.+.++++.+.. ++.+.+..+...+++|..++
T Consensus 97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 344545554454 555667788888877777777532 257789999999999987 56677888889999999999
Q ss_pred HHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH--------cCChHH-HHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR--------EGCIKP-LCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 301 ~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~l~~-L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
.+..++...+..|...+..+...+ ....++.+ .-.+.. +..+.+.+++.+.+.++.+..++..+...
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999888753 22222221 112333 33344567888888888888888765543
No 180
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.25 Score=42.06 Aligned_cols=241 Identities=17% Similarity=0.226 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK 89 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 89 (447)
..-++.|+..|+++... +.+..+.+...+++ ...+...+.+|+.... ...++.|+.
T Consensus 19 l~~r~rALf~Lr~l~~~------------~~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~~ 74 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGP------------AAIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLVE 74 (289)
T ss_pred HHHHHHHHHhhhccCCh------------HHHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHHH
Confidence 34455566666555442 12555555555554 5667777778877765 246788888
Q ss_pred hhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-----------
Q 013228 90 LLAS--PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK----------- 156 (447)
Q Consensus 90 ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----------- 156 (447)
.+.+ ..+-+|..|..+|+.+. . +. .++.+-+.. +++-.++++.+..++..+-...
T Consensus 75 vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~ 142 (289)
T KOG0567|consen 75 VLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPY 142 (289)
T ss_pred HhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCcc
Confidence 7765 56788888999998886 2 21 133333333 5555666666666665553222
Q ss_pred ----CCCChhhHhhhHHHHHHhh-ccCChhH-HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHH
Q 013228 157 ----PKPIFDQVRPALPALAQLV-HSNDKEV-MTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ 230 (447)
Q Consensus 157 ----~~~~~~~~~~~l~~l~~ll-~~~~~~v-~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~ 230 (447)
|... ....-+..+-..+ ....+.. +..+...|+|+.. ++ .+..|..-+..++.-+|..+..
T Consensus 143 ~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 143 ISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLADDSALFRHEVAF 209 (289)
T ss_pred ccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcccchHHHHHHHHH
Confidence 1111 1111233333333 3222222 4456666666542 22 2445566677778888999999
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhH
Q 013228 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIH-NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDI 309 (447)
Q Consensus 231 ~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v 309 (447)
+++.+-.. -.++.|.+.|.. .+.+.+|.+|+.+|+.++. ++ .++.|.+.+..+++-+
T Consensus 210 VfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~~vv 267 (289)
T KOG0567|consen 210 VFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEERVV 267 (289)
T ss_pred HHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcHHHH
Confidence 99876531 245566666643 3378999999999999854 23 4566777777777778
Q ss_pred HHHHHHHHHHhc
Q 013228 310 KNWAARAISNAT 321 (447)
Q Consensus 310 ~~~a~~aL~~l~ 321 (447)
++.+..+|.-+-
T Consensus 268 ~esc~valdm~e 279 (289)
T KOG0567|consen 268 RESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHH
Confidence 888777775543
No 181
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.79 E-value=0.0024 Score=47.28 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=61.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA 110 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~ 110 (447)
.++..|+++|..++++.+...||.=|+.++...|..+..+-+.|+=..+..++.+++++++..|+.++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 368899999955544888999999999999989999998888899999999999999999999999988774
No 182
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.021 Score=58.10 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=120.9
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228 83 AVPIFVKLLAS----PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158 (447)
Q Consensus 83 ~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 158 (447)
..|.++...+. .+|+++.+|.-+|+.+..-+..+-+ ..++.++..+..++++.++.++.-+++.++...|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 44566666644 5799999999999999865544322 24889999998899999999999999998876544
Q ss_pred CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
. ....-+.+...|++.++.++..|+..+.++.-++--+ -.|.+.-+..++.+++..++..|=..+..|+..
T Consensus 995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 3 2445667888999999999999999999998654332 348899999999999999998887777777754
Q ss_pred ChhhHHHHHhcCChHHHHHhhccC
Q 013228 239 DDFQTQCIINCGALPYLLGLLIHN 262 (447)
Q Consensus 239 ~~~~~~~~~~~~~l~~l~~~l~~~ 262 (447)
.. .++ +++|-++.-|.++
T Consensus 1066 ~n----~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GN----TIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred cc----chh--hhchHHHHhhccC
Confidence 43 233 3566666666544
No 183
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.78 E-value=0.084 Score=47.44 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=83.6
Q ss_pred CcHHHH-HHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHH
Q 013228 208 GVCPRL-VELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEH 285 (447)
Q Consensus 208 ~~~~~L-~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~ 285 (447)
+++..+ .+.++++++.+|..++.++|-.+-.+..... ..++.+...+..+ +..++..|+.++..+.. ++.+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 344443 4778889999999999999998876664433 3466778888777 89999999999998876 33332
Q ss_pred HHHHH-------HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228 286 IQAVI-------DAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 286 ~~~l~-------~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~ 324 (447)
..... ...++..+...+.+.+++++..|+..++.+...+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 22222 2456778888888889999999999999988764
No 184
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.58 Score=45.85 Aligned_cols=298 Identities=16% Similarity=0.086 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----C---CCHHHHHHHHHHHHHHcC--CChhhHHHHHhCCCh
Q 013228 14 LEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----E---DYPQLQFEAAWALKNIVS--GTSEDTKVVIDHGAV 84 (447)
Q Consensus 14 ~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----~---~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i 84 (447)
..|+..+..+.++.... .-.|+++.+...|.. + +++.-.+.|++.+.++.. +.......+.+.=++
T Consensus 388 laal~fl~~~~sKrke~-----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv 462 (970)
T COG5656 388 LAALFFLIISKSKRKEE-----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV 462 (970)
T ss_pred HHHHHHHHHHhcccchh-----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 45666666665553121 125788999988832 1 123445677777777655 333334445555567
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV 164 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (447)
+.++..++++..-++..++..++.+..+- ++...-..+.+...+.+ .+.+..++..|+.++.-+..+. .......
T Consensus 463 ~hv~P~f~s~ygfL~Srace~is~~eeDf---kd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~s 537 (970)
T COG5656 463 NHVIPAFRSNYGFLKSRACEFISTIEEDF---KDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFS 537 (970)
T ss_pred HHhhHhhcCcccchHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHH
Confidence 77788888999999999999999995432 22322334566667777 4467788888888888887775 3333333
Q ss_pred hhhH---HHHHHhhccCChhHHHHHHHHHH-HhccCCcHHHHHHHH---hCcHHHHHHhcCCCC------chhHhHHHHH
Q 013228 165 RPAL---PALAQLVHSNDKEVMTDACRALF-YLSEGTNDEIQAVIE---AGVCPRLVELLGHPS------PSVLTRALQT 231 (447)
Q Consensus 165 ~~~l---~~l~~ll~~~~~~v~~~al~~l~-~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~------~~v~~~a~~~ 231 (447)
..+. +.++.+-+.-+.++...++..+. ..+..-......+.. ..++.....++..++ ++-+..|...
T Consensus 538 ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGi 617 (970)
T COG5656 538 AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGI 617 (970)
T ss_pred hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence 3333 33333333334444444444332 222221111111111 122233333343321 2234444444
Q ss_pred HHHhhc------CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 013228 232 VVNIAA------GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA 305 (447)
Q Consensus 232 l~~l~~------~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~ 305 (447)
|..+.. ..+...+ -+.....|.+--++++. ..+.-.+|+-.+-+......+.- -+--|+.+.+.+++.+.
T Consensus 618 L~T~~smiLSlen~p~vLk-~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~ 693 (970)
T COG5656 618 LRTIESMILSLENRPLVLK-YLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDE 693 (970)
T ss_pred HHHHHHHHHhcccchHHHH-HHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhccccc
Confidence 444321 1222222 22334556666666666 67777788877776654332211 11123444444444444
Q ss_pred c-hhHHHHHHHHHHHhcCCCC
Q 013228 306 E-FDIKNWAARAISNATFGGT 325 (447)
Q Consensus 306 ~-~~v~~~a~~aL~~l~~~~~ 325 (447)
. ......++-++.|+...+.
T Consensus 694 ~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 694 ITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred chhhhHHHHHHHHHHHHHhCc
Confidence 4 2566788889999987763
No 185
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.67 E-value=0.02 Score=45.74 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=99.1
Q ss_pred HHHHHhcC--CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 013228 211 PRLVELLG--HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQA 288 (447)
Q Consensus 211 ~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 288 (447)
..++..|. ...+.+|..+.-++..+. +...+. ....+-+.+-..+..+ +.+-...++.++..+....++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34444443 467889999999998885 222222 2223344555556655 6667788888999998888888777
Q ss_pred HH-HcCChHHHHHHHh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHH-HHHHHHHHHHH
Q 013228 289 VI-DAGLIGPLVNLLQ--NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPE-IVTVFLKGLEK 362 (447)
Q Consensus 289 l~-~~~~~~~L~~~l~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~-~~~~a~~~l~~ 362 (447)
++ ..|+++.+..++. +++..++..++.+|..-+. +...+.. +...+++.|.+.++. +++. ++..|+-+|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 76 5789999999999 7788999999999988776 3444444 444569999999964 4454 67776666554
No 186
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.62 E-value=0.2 Score=48.61 Aligned_cols=253 Identities=13% Similarity=0.115 Sum_probs=159.2
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHH
Q 013228 94 PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALA 172 (447)
Q Consensus 94 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~ 172 (447)
.+.+-+..-...|..-. +...+.+.....++.++..+..+. ...+....+. +.......+ +...++|.++
T Consensus 266 ks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k-~~k~ld~~e-----yq~~i~p~l~ 336 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFK-LGKDLDEEE-----YQVRIIPVLL 336 (690)
T ss_pred CcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHH-hhhhccccc-----cccchhhhHH
Confidence 45555555444444422 222333444455666666663333 1222222221 122211111 4477899999
Q ss_pred HhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCCh
Q 013228 173 QLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGAL 252 (447)
Q Consensus 173 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l 252 (447)
+++...|..+|...+.-+-.....-+ +..++..+++.+..-+.+.++.+|...+.++..++..-... .++...+
T Consensus 337 kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~---~Ln~Ell 410 (690)
T KOG1243|consen 337 KLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR---NLNGELL 410 (690)
T ss_pred HHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---hhcHHHH
Confidence 99999999999888877766665443 34567789999999999999999999999998887533211 2333445
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHH
Q 013228 253 PYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL-IGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKY 331 (447)
Q Consensus 253 ~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~-~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 331 (447)
..+.++-.+. +..+|....-|++.++...... ...++ .-+..+-+.++-..-|..+.+++..-...-... .
T Consensus 411 r~~ar~q~d~-~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--~- 482 (690)
T KOG1243|consen 411 RYLARLQPDE-HGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--E- 482 (690)
T ss_pred HHHHhhCccc-cCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh--h-
Confidence 5555555544 7889999888888887642221 13333 334455566666777888887776655432111 1
Q ss_pred HHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 013228 332 LVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAE 370 (447)
Q Consensus 332 l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~ 370 (447)
+...+++.++-+.-+.+..++..+..++..+....++.
T Consensus 483 -va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 483 -VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred -hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 22347888888888999999999998888887765553
No 187
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.60 E-value=0.021 Score=56.59 Aligned_cols=152 Identities=20% Similarity=0.175 Sum_probs=114.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc-CCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSE-EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.++|.|++.....+...+..-+.+|+++..+-|. ...+.+. ..+|-+++.| .-+|..++..+..++.-+....+...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccc
Confidence 5788899888876777888888888888876663 2222222 2355566666 77888999999999988887777777
Q ss_pred hhhHhhhHHHHHHhhccCC---hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHh
Q 013228 161 FDQVRPALPALAQLVHSND---KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~---~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l 235 (447)
......++|.+..+=.+.+ ..+|..|+.++..+.+.-+...-......++..|.+.|.++.--+|..|.++=.+.
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 7778899999988877665 67899999999999984333222344557889999999999999999998765443
No 188
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.59 E-value=0.13 Score=44.26 Aligned_cols=108 Identities=24% Similarity=0.272 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHH
Q 013228 309 IKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLV 387 (447)
Q Consensus 309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i 387 (447)
....|+..|.-++.- .+..+..+.+...++.++.++.. ..+.++.+++.+|..++-..... .+.|
T Consensus 107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F 172 (257)
T PF08045_consen 107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence 345566777666655 45667777888999999999954 56788999999998888765543 6789
Q ss_pred HHhchHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 013228 388 EEAEGLEKIENLRSHD--NDEIHEKSVKILETYWCGRVAGPQPGN 430 (447)
Q Consensus 388 ~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~ 430 (447)
++.+|+..+..+..+. +.+++-+..+.|--|+.++.....++.
T Consensus 173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~~ 217 (257)
T PF08045_consen 173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPPGS 217 (257)
T ss_pred HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCccc
Confidence 9999999999997654 678999999999988887776655443
No 189
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.49 E-value=0.31 Score=46.89 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=86.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV 164 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (447)
..++.... .+...++-|+..+.....+-|..++. ++..++.++ .+.|..++..|...|..+|.+.+ ..+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v 94 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHV 94 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-H
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHH
Confidence 33444444 47889999999999999888876555 478899999 78889999999999999998752 345
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC---CCCchhHhHHHHHHHH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG---HPSPSVLTRALQTVVN 234 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~---~~~~~v~~~a~~~l~~ 234 (447)
..+...|+++|.++++.....+=.+|..+...++. +.+..+...+. ..++.+|..++..|..
T Consensus 95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 67788899999998877777777777766644332 22333333332 4667789988877743
No 190
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.44 E-value=0.08 Score=55.55 Aligned_cols=131 Identities=14% Similarity=0.104 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc
Q 013228 143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP 222 (447)
Q Consensus 143 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 222 (447)
..+.|+...++...+ -.....+.+..++..+..+...+|..|++||+.+...++.. +....+-..+...+.+...
T Consensus 795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence 345555555554421 11223567778888899999999999999999999876542 2333445556677788889
Q ss_pred hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH
Q 013228 223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE 284 (447)
Q Consensus 223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~ 284 (447)
.||.+|+..+|......++..... ...+..-+.++ .-.||+.+...+..+|...|+
T Consensus 870 sVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCC
Confidence 999999999999988777655543 44666667777 788999999999999986544
No 191
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.39 E-value=0.39 Score=44.36 Aligned_cols=173 Identities=12% Similarity=0.110 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHHh-cCCCCCCChhhHhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 013228 139 LSMLRIATWTLSNF-CAGKPKPIFDQVRPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL 216 (447)
Q Consensus 139 ~~~~~~a~~~L~~l-~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 216 (447)
.+-+..|..-|..+ +.+.-.........++-.++..|.+ .++..+.-|++.|..++.+...+...-.+ -.+..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHH
Confidence 34445565544444 4443333333446677788888887 68888999999999999776543221111 234455555
Q ss_pred cCCCCchhHhHHHHH-HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCC
Q 013228 217 LGHPSPSVLTRALQT-VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGL 294 (447)
Q Consensus 217 L~~~~~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~ 294 (447)
-.+..+.+...|... +.-++...+.. .+..+..++.+. +...-..+..++..++.. +.+....++. .+
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-di 449 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DI 449 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hh
Confidence 556556555555444 44444444432 122344445455 666666666677777763 3343434444 48
Q ss_pred hHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 295 IGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 295 ~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
.|.++....+.+..||+.|+.+|..+..
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 9999999999999999999999988764
No 192
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.38 E-value=0.036 Score=44.26 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=96.8
Q ss_pred ChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 013228 251 ALPYLLGLLIH-NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI 329 (447)
Q Consensus 251 ~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~ 329 (447)
-++.++..|.. ...+++|..+.-++..+.. ...+. ...-+-+.+-..+..++.+-...+..++..+... .++..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence 45556666654 4378899999999988842 11222 2222333444445555666777888888888776 55555
Q ss_pred H-HHHHcCChHHHHhhcc--CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh-cCCCH
Q 013228 330 K-YLVREGCIKPLCDLLL--CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR-SHDND 405 (447)
Q Consensus 330 ~-~l~~~~~l~~L~~ll~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~~~~ 405 (447)
. .+...|+++.+..+.. +++..+...++++|..-+.... ++.+....+++.|.++. +++++
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~---------------~r~~I~~~~~~~L~~~~~~~~~~ 143 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS---------------CRTFISKNYVSWLKELYKNSKDD 143 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH---------------HHHCCHHHCHHHHHHHTTTCC-H
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH---------------HHHHHHHHHHHHHHHHHccccch
Confidence 4 4457799999999998 7788888888887776553321 45555588899999987 45656
Q ss_pred H-HHHHHHHHHHH
Q 013228 406 E-IHEKSVKILET 417 (447)
Q Consensus 406 ~-v~~~a~~~l~~ 417 (447)
. ++-+|.-.|.+
T Consensus 144 ~~ir~~A~v~L~K 156 (157)
T PF11701_consen 144 SEIRVLAAVGLCK 156 (157)
T ss_dssp H-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6 78888777654
No 193
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.33 E-value=0.087 Score=45.20 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=84.9
Q ss_pred hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 013228 224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ 303 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~ 303 (447)
....|++.|.-++--++..+..+-....+..++.+|.....+.++..+..+|..+...++.+...+-+.+++..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45667888888888888888888889999999999965447899999999999998888999999999999999999999
Q ss_pred cC--chhHHHHHHHHHHHhcCC
Q 013228 304 NA--EFDIKNWAARAISNATFG 323 (447)
Q Consensus 304 ~~--~~~v~~~a~~aL~~l~~~ 323 (447)
+. +.+++.++...|.-....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 64 678888888888766553
No 194
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.32 E-value=0.098 Score=50.63 Aligned_cols=229 Identities=15% Similarity=0.161 Sum_probs=152.4
Q ss_pred hhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 013228 32 TEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA 110 (447)
Q Consensus 32 ~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~ 110 (447)
.+.++...+++.|+..+..++ ..++..-. .-++.... ..+ .+.++++.|+++...++..+|-..+.-+-+..
T Consensus 286 pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl-~k~~k~ld-~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i 358 (690)
T KOG1243|consen 286 PEEIIASKVLPILLAALEFGDAASDFLTPL-FKLGKDLD-EEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI 358 (690)
T ss_pred hHHHHHHHHHHHHHHHhhccccchhhhhHH-HHhhhhcc-ccc-----cccchhhhHHHHhcCcchHHHHHHHHhHHHHh
Confidence 345556667777777766554 12333222 22333332 122 55678999999999999999977666666655
Q ss_pred cCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHH
Q 013228 111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRAL 190 (447)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l 190 (447)
.. ..+.+.+..+++.+..-+ .+++..+++.++.++..++..-... ......+..+.++-.+.+..++....-|+
T Consensus 359 ~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticl 432 (690)
T KOG1243|consen 359 DH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICL 432 (690)
T ss_pred hh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeee
Confidence 43 334555667888888888 7889999999999998888543111 22345566666665567788998888888
Q ss_pred HHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHH
Q 013228 191 FYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTD 270 (447)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~ 270 (447)
+.++....... .+.-...++.+-++++-..-|..+...+.......+. .-+...+++.+..+..++ +..+|..
T Consensus 433 gki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~ 505 (690)
T KOG1243|consen 433 GKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDP-EKTVRDT 505 (690)
T ss_pred cccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccCc-ccchhhH
Confidence 88886644322 2222344555667777778888888888776655442 234457888888888888 8888888
Q ss_pred HHHHHHHHhc
Q 013228 271 ACWTISNITA 280 (447)
Q Consensus 271 a~~~l~nl~~ 280 (447)
|-.++...-.
T Consensus 506 a~~~i~~fl~ 515 (690)
T KOG1243|consen 506 AEKAIRQFLE 515 (690)
T ss_pred HHHHHHHHHh
Confidence 8777766544
No 195
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.30 E-value=0.048 Score=36.65 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 013228 268 KTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREG 336 (447)
Q Consensus 268 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 336 (447)
.+.+.|+++++++. +.....+.+.++++.++++.. ++...+|-.|..+|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999774 466777777899999999988 5678999999999999988 567777766655
No 196
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.29 E-value=1 Score=45.84 Aligned_cols=210 Identities=15% Similarity=0.205 Sum_probs=127.1
Q ss_pred HhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc---cccc----hhHHHHHH
Q 013228 79 IDHGAVPIFVKLLAS-----PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN---KHAK----LSMLRIAT 146 (447)
Q Consensus 79 ~~~~~i~~L~~ll~~-----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~----~~~~~~a~ 146 (447)
.+.|++..++.++.+ .........+..|...|.- +.+|+.+.+.++++.++..+. .... ..+.+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 346899999998876 2345666666666666655 568888999999999999885 2222 45566666
Q ss_pred HHHHHhcCCCCCCChh-------------hHhhhHHHHHHhhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 013228 147 WTLSNFCAGKPKPIFD-------------QVRPALPALAQLVHS----NDKEVMTDACRALFYLSEGTNDEIQAVIEAGV 209 (447)
Q Consensus 147 ~~L~~l~~~~~~~~~~-------------~~~~~l~~l~~ll~~----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 209 (447)
.++..+.......... ....-+..++..+.+ .++.+....++.|-+++....+..+.+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 5555554332111000 012334555555553 468899999999999998888877766543
Q ss_pred HHHHHHhcCC--CCchhHhHHHHHHHHhhcCC------hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228 210 CPRLVELLGH--PSPSVLTRALQTVVNIAAGD------DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG 281 (447)
Q Consensus 210 ~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~ 281 (447)
+...+++=.- ....--...+.++..++.+- ...++.+++.|++...+..|... -+.. ...
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~ 338 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNT 338 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccC
Confidence 2222222111 11111122355566665432 24567788899999888888655 3333 111
Q ss_pred CHHHHHHHHHcCChHHHHHHHh
Q 013228 282 NSEHIQAVIDAGLIGPLVNLLQ 303 (447)
Q Consensus 282 ~~~~~~~l~~~~~~~~L~~~l~ 303 (447)
....+..++....+|.++++|.
T Consensus 339 ~s~eWk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 339 DSPEWKEFLSRPSLPYILRLLR 360 (802)
T ss_pred CCHHHHHHhcCCcHHHHHHHHH
Confidence 2344666777777777777766
No 197
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.27 E-value=0.76 Score=46.65 Aligned_cols=211 Identities=15% Similarity=0.161 Sum_probs=120.0
Q ss_pred HHhcCCHHHHHHHhcccc----chhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh----ccCC----hhHHHHHH
Q 013228 120 VLSEEALIPLLTQLNKHA----KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV----HSND----KEVMTDAC 187 (447)
Q Consensus 120 ~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll----~~~~----~~v~~~al 187 (447)
+.+.|++..++..+.... +.......+..|...+.-..+++.....+.++.|+..+ .... ..+.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 345678888888885322 34566667777777776654444444467777766655 3434 56777777
Q ss_pred HHHHHhccCCcHH-HH---HHH--------HhCcHHHHHHhcCC----CCchhHhHHHHHHHHhhcCChhhHHHHHhcCC
Q 013228 188 RALFYLSEGTNDE-IQ---AVI--------EAGVCPRLVELLGH----PSPSVLTRALQTVVNIAAGDDFQTQCIINCGA 251 (447)
Q Consensus 188 ~~l~~l~~~~~~~-~~---~~~--------~~~~~~~L~~lL~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 251 (447)
..+-.+....... .. ... ...-+..+++.+.+ .++.+....+++|..|+.++++..+.+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 6666655322110 00 000 11226666776655 457888999999999999999887776652
Q ss_pred hHHHHHhhc--cCCchhHHHHHHHHHHHHhcC------CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 252 LPYLLGLLI--HNHKKSIKTDACWTISNITAG------NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 252 l~~l~~~l~--~~~~~~v~~~a~~~l~nl~~~------~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
+...+++=. .....+- ...+.+++.++.+ .....+.+++.|++...++++...-|.. ...
T Consensus 271 F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~-----------~~~ 338 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL-----------KNT 338 (802)
T ss_pred HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc-----------ccC
Confidence 122222111 1101111 1224445555432 2355677889999999999988665544 111
Q ss_pred CCHHHHHHHHHcCChHHHHhhc
Q 013228 324 GTHEQIKYLVREGCIKPLCDLL 345 (447)
Q Consensus 324 ~~~~~~~~l~~~~~l~~L~~ll 345 (447)
.+++- +.++....++.++++|
T Consensus 339 ~s~eW-k~~l~~psLp~iL~lL 359 (802)
T PF13764_consen 339 DSPEW-KEFLSRPSLPYILRLL 359 (802)
T ss_pred CCHHH-HHHhcCCcHHHHHHHH
Confidence 23333 3334455566665555
No 198
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.24 E-value=0.52 Score=43.58 Aligned_cols=275 Identities=18% Similarity=0.139 Sum_probs=138.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCH-HHHHHHHHHHHHhhcCChhHHH
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSD-DIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~-~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
+..++.-+.+.....+|..++--|+.-+. +++++..+..+|..+.++..+.+ ++. ...-.++.++.-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 55566666644446889988888888888 89999999999999999999855 333 333344444455555443 233
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc---------cCChhHHHHHHHH
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH---------SNDKEVMTDACRA 189 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---------~~~~~v~~~al~~ 189 (447)
.+.....+..++.++.-.....+..... ... ..............+...+. .....-+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 3334445555566663000000000000 000 00000000111111111110 1112223333333
Q ss_pred HHHhc--------------cCCcHHHHHHHHhCcHHHHHHhcC----CC-------C-----chhHhHHHHHHHHhhcCC
Q 013228 190 LFYLS--------------EGTNDEIQAVIEAGVCPRLVELLG----HP-------S-----PSVLTRALQTVVNIAAGD 239 (447)
Q Consensus 190 l~~l~--------------~~~~~~~~~~~~~~~~~~L~~lL~----~~-------~-----~~v~~~a~~~l~~l~~~~ 239 (447)
+-.++ ...+...+.+...|++..++..+. .. . ......++++|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 33331 011122334556678888888874 11 1 123455788888887666
Q ss_pred hhhHHHHHhc--CChHHHHH-hhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----------
Q 013228 240 DFQTQCIINC--GALPYLLG-LLIHN--HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ----------- 303 (447)
Q Consensus 240 ~~~~~~~~~~--~~l~~l~~-~l~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~----------- 303 (447)
+......... +.+..+.. ++... ....+...++..+.|+..++++.+..+...++...+..+..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 6544444432 23333322 22222 03344567788888998877776666655433222211111
Q ss_pred ---cCchhHHHHHHHHHHHhcCCC
Q 013228 304 ---NAEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 304 ---~~~~~v~~~a~~aL~~l~~~~ 324 (447)
....+...-+..++.|++...
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeC
Confidence 122455667777777777653
No 199
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.11 E-value=0.0083 Score=32.80 Aligned_cols=28 Identities=39% Similarity=0.759 Sum_probs=25.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAA 111 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~ 111 (447)
+|.+++++.++++++|..|+++|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999874
No 200
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.07 E-value=0.66 Score=42.88 Aligned_cols=275 Identities=17% Similarity=0.157 Sum_probs=140.9
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHH-hcCCCCCCCh
Q 013228 84 VPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSN-FCAGKPKPIF 161 (447)
Q Consensus 84 i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~ 161 (447)
++.++.-+. +.+..+|+.++--|+.-|.+ +.++..+...|....++..+....+......++.++.. ++.+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 455665555 35678899998888888876 45888999999999999999554444355554444444 4444333333
Q ss_pred hhHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc---------CCCCchhHhHHHHH
Q 013228 162 DQVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL---------GHPSPSVLTRALQT 231 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL---------~~~~~~v~~~a~~~ 231 (447)
.........++.++.-. ...+....- .... ....... ......+...+ ......-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~-~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRK-KNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhh-hhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 33455566666666611 000000000 0000 0000010 01122122222 01223445566666
Q ss_pred HHHhhc--------------CChhhHHHHHhcCChHHHHHhhcc----C------C-----chhHHHHHHHHHHHHhcCC
Q 013228 232 VVNIAA--------------GDDFQTQCIINCGALPYLLGLLIH----N------H-----KKSIKTDACWTISNITAGN 282 (447)
Q Consensus 232 l~~l~~--------------~~~~~~~~~~~~~~l~~l~~~l~~----~------~-----~~~v~~~a~~~l~nl~~~~ 282 (447)
+-.++. ..+...+.+.+.|+++.++..+.. . . +...-..+..+|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 666631 112234455667788888888752 1 0 1112234556666766655
Q ss_pred HHHHHHHHH--cCChHHHHHHH-h---cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH---HHhh----ccC--
Q 013228 283 SEHIQAVID--AGLIGPLVNLL-Q---NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP---LCDL----LLC-- 347 (447)
Q Consensus 283 ~~~~~~l~~--~~~~~~L~~~l-~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~---L~~l----l~~-- 347 (447)
+++..+++. .+.++.+...+ . .........++..+.|++.+ ++..+..+...++... +... +..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 555555553 23333333322 2 23345567888899999876 4444444443322221 1111 110
Q ss_pred -----CCHHHHHHHHHHHHHHHHhhh
Q 013228 348 -----ADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 348 -----~~~~~~~~a~~~l~~l~~~~~ 368 (447)
..-++...+++++.|+++.++
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 112567778888888887654
No 201
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.06 E-value=0.012 Score=32.10 Aligned_cols=29 Identities=34% Similarity=0.398 Sum_probs=25.6
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 167 ALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 167 ~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
++|.+.+++++++++||..++.+|+.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998874
No 202
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.02 E-value=0.23 Score=48.06 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=123.0
Q ss_pred hHHHHHHhhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhcCChh
Q 013228 167 ALPALAQLVHS----NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 167 ~l~~l~~ll~~----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
.-|.+.....+ +|+.++..|--+|..+..-+.+... .-+|.++..+. +++|.+|..|.-.++.++.....
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 33445555443 6889998888888776644433222 34788999986 79999999999999988755443
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~ 321 (447)
..+. .-..|.+-|.+. +..||+.+..++.++...+ .+--.|-++.+..+|.++|..+...|-..+..++
T Consensus 968 ~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 968 TADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 3332 334677778888 9999999999999987643 1223678899999999999999999999999998
Q ss_pred CCCCHHHHHHHHHcCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhh
Q 013228 322 FGGTHEQIKYLVREGCIKPLCDLLLC---ADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 322 ~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~~~a~~~l~~l~~~~ 367 (447)
...+. .-+|+++..-.+-.+ ++.+ -...++.|..++...
T Consensus 1037 ~KdNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ke 1078 (1128)
T COG5098 1037 KKDNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKE 1078 (1128)
T ss_pred hcccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHH
Confidence 86543 223555554444432 2222 345566666666543
No 203
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.91 E-value=1.1 Score=41.60 Aligned_cols=192 Identities=16% Similarity=0.243 Sum_probs=116.3
Q ss_pred HHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH---HhcCCC--CCCChhhHhhhHHHHHHhh
Q 013228 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS---NFCAGK--PKPIFDQVRPALPALAQLV 175 (447)
Q Consensus 101 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~---~l~~~~--~~~~~~~~~~~l~~l~~ll 175 (447)
.|+.+|-.+....+..-..+.+.+++..+++.+...-+ .++. .-..+. +...... .+. ...+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~--------~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i 69 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVD--------FALEENKNEEAGSGIPPEYKES---SVD--GYSI 69 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHH--------HHHhcccccCCCCCCCCCcccc---ccc--cccc
Confidence 35566666665555555667788999999998832111 1111 111010 0000000 000 0000
Q ss_pred ccCChhHHHHHHHHHHHhcc---CCcHHHHHHHH-hCcHHHHHHhcCCCC---chhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228 176 HSNDKEVMTDACRALFYLSE---GTNDEIQAVIE-AGVCPRLVELLGHPS---PSVLTRALQTVVNIAAGDDFQTQCIIN 248 (447)
Q Consensus 176 ~~~~~~v~~~al~~l~~l~~---~~~~~~~~~~~-~~~~~~L~~lL~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~ 248 (447)
........+..++.+..+.. ......+.+.+ ..+...|..++.+.. +.+...|+.++..+....|.....+.+
T Consensus 70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e 149 (379)
T PF06025_consen 70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE 149 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 00112223333444444443 33344455666 566677777777654 567888999999999999988888999
Q ss_pred cCChHHHHHhhc-cC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCc
Q 013228 249 CGALPYLLGLLI-HN--HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE 306 (447)
Q Consensus 249 ~~~l~~l~~~l~-~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~ 306 (447)
.|+.+.+++.+. .. .+.++-...-.+++.+|.+ ....+.+.+.+.++.+++++.+++
T Consensus 150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence 999999999887 32 2456666666677777765 477888889999999999988654
No 204
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.91 E-value=2.3 Score=43.04 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=111.5
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH--HHHHHHHcCChHHHHHHHhcC-ch
Q 013228 231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE--HIQAVIDAGLIGPLVNLLQNA-EF 307 (447)
Q Consensus 231 ~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~--~~~~l~~~~~~~~L~~~l~~~-~~ 307 (447)
++++++..++..++.+++.+++..+.+.++.-....+...+...++|++...+. .......... ..+..++..- +.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence 888999999999999999999999999998655788999999999999874321 1111111111 1222233322 33
Q ss_pred hHHHHHHHHHHHhcCCCCH--------HHHHHHH--------------HcCChHH-HHhhccC-CCHHHHHHHHHHHHHH
Q 013228 308 DIKNWAARAISNATFGGTH--------EQIKYLV--------------REGCIKP-LCDLLLC-ADPEIVTVFLKGLEKI 363 (447)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~--------~~~~~l~--------------~~~~l~~-L~~ll~~-~~~~~~~~a~~~l~~l 363 (447)
+.-..|+..|..+...+++ .....+. ....+.+ +..++.. ..+..+.+|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 6666777777777664321 0001111 1112333 4444443 4557788999999999
Q ss_pred HHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 013228 364 LKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDEIHEKSVKILETYW 419 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~ 419 (447)
+....+ ++..+.+.|++..+.++.. +...+++..+..++..+.
T Consensus 653 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 653 LEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 876544 4777888999999988732 236667777777776553
No 205
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.89 E-value=0.22 Score=50.34 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=134.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV 164 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (447)
+.+..-+.+++..-|..++..+........ ........+.+-.++.....+.+..+...++.+|..++...........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 444445556778888888888888775544 1111112233455555555677888888899999999977655555566
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh-hhH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD-FQT 243 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-~~~ 243 (447)
..++|.++.-+......++..++.++..++.... -....+.+...+.+.++.++..+...+.......+ ...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 8889999999998888888887777766654211 11356888899999999999998888887765444 111
Q ss_pred HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHH
Q 013228 244 QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAV 289 (447)
Q Consensus 244 ~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l 289 (447)
..-.-.+.++.++....+. +..||..|..+++-+.. .+.+....+
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1111235788888888888 99999999988887765 333444433
No 206
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.75 E-value=1.5 Score=39.95 Aligned_cols=171 Identities=18% Similarity=0.168 Sum_probs=122.8
Q ss_pred HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-hHHHHHHHhc-----Cc--------h
Q 013228 244 QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDA-GL-IGPLVNLLQN-----AE--------F 307 (447)
Q Consensus 244 ~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~-~~-~~~L~~~l~~-----~~--------~ 307 (447)
+.+++.. ++.+.+.|.+. ...+...+...+..++. .+......+.+. ++ .+.+-.++.. ++ +
T Consensus 51 ~~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 3444443 78889999888 77788889999999988 666666676652 22 3444444431 11 2
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHH
Q 013228 308 DIKNWAARAISNATFGGTHEQIKYLVR-EGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQL 386 (447)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (447)
.+|...+..+..+...+++.....+++ .+.+..+...+...+++++...+..+..-+-.++..+.. ....
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~---------~K~~ 199 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS---------TKCK 199 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh---------hhhh
Confidence 899999999999998888877766665 567888999999988899999999998654443332211 2333
Q ss_pred HHHhchHHHHHHHhcCCCH----HHHHHHHHHHHHhcCCCCCC
Q 013228 387 VEEAEGLEKIENLRSHDND----EIHEKSVKILETYWCGRVAG 425 (447)
Q Consensus 387 i~~~~~~~~l~~l~~~~~~----~v~~~a~~~l~~~~~~~~~~ 425 (447)
+-....+..|..+...+.+ .+.+.+.+.+..++.+-...
T Consensus 200 ~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 200 LFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred hcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcc
Confidence 3346688899999888888 89999999999988654433
No 207
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.68 E-value=2.9 Score=42.61 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=68.8
Q ss_pred hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 013228 224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ 303 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~ 303 (447)
++..+.-+++++|-.++...+ ..+|.+++-|.......+|.+.+.+++.+|..- ...-...+|.+...|.
T Consensus 947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhc
Confidence 344444455555543332222 244555555544334455555555555554421 1122236777777788
Q ss_pred cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh-HHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 304 NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCI-KPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 304 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l-~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
++++-+|+.+...|.++...+ ++-..|.+ -.++--+-+.+++++..+--++..++...
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 888888888888888887632 22223332 12333334456677777777777776643
No 208
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.65 E-value=1.4 Score=38.70 Aligned_cols=204 Identities=10% Similarity=0.038 Sum_probs=139.0
Q ss_pred HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh---hhH---hhhHHHHHHhhccCChhHHHHHHHHHH
Q 013228 118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF---DQV---RPALPALAQLVHSNDKEVMTDACRALF 191 (447)
Q Consensus 118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~---~~~l~~l~~ll~~~~~~v~~~al~~l~ 191 (447)
..+...|.+..++..+ ..-+-+.+..++.+..++-+..-.... ... ..++..++.--.. .+++.-.+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 3456778899999998 677778888899998888776521111 111 2333333333111 2455444444444
Q ss_pred HhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCC----hHHHHHhhccCCchhH
Q 013228 192 YLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGA----LPYLLGLLIHNHKKSI 267 (447)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~l~~~l~~~~~~~v 267 (447)
....+ +...+.+..+.-+......+..+.-++...|..+...+..........++..+. .+.--.++.++ +.-.
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 44433 334456677777888888888888899999999998887766655555555433 34466677888 9999
Q ss_pred HHHHHHHHHHHhcCCH--HH-HHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 013228 268 KTDACWTISNITAGNS--EH-IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGT 325 (447)
Q Consensus 268 ~~~a~~~l~nl~~~~~--~~-~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~ 325 (447)
++.+...++.+..+.+ .. .+++-...-+..++.+|..+...++.+|.....-+..+.+
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 9999999998876432 22 2333334568899999999999999999999988877543
No 209
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.62 E-value=0.13 Score=41.09 Aligned_cols=147 Identities=10% Similarity=0.025 Sum_probs=86.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
.+++.|.++|+.+.+..+|.+++++|+.+-.-+|...+.+.... +.- .-.............. .......+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~~-~~~~~~~e---- 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLPM-MGISPSSE---- 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHhh-ccCCCchH----
Confidence 36788899998886689999999999999886665444222211 100 0011111222221111 11111111
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLS 194 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~ 194 (447)
...-.-++..|+..|+..+-..-...+..++.++..............++|.++..++..++..++..+.-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222335778888885444344445567777777655444556677899999999999777788777766665553
No 210
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.51 E-value=2.5 Score=40.71 Aligned_cols=252 Identities=13% Similarity=0.065 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK 89 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 89 (447)
.+.|..+...+..++.+. . ..-...+ ..+.+.+..+..++.-..-+.+|..++.+..+. ...+.++.+.|..
T Consensus 43 ~e~R~~~~~ll~~~i~~~-~-~~~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~ 114 (464)
T PF11864_consen 43 SEARRAALELLIACIKRQ-D-SSSGLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLS 114 (464)
T ss_pred HHHHHHHHHHHHHHHHcc-c-cccHHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHH
Confidence 456666666666666653 1 1111111 112222333322443444555666666644443 2245566777766
Q ss_pred hhCCC---------------------------CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHH
Q 013228 90 LLASP---------------------------SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSML 142 (447)
Q Consensus 90 ll~~~---------------------------~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 142 (447)
.+..- +.......+..+.|+...+...-+.-.-.+.+..++.+.....+....
T Consensus 115 wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di 194 (464)
T PF11864_consen 115 WLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI 194 (464)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH
Confidence 65320 122233444555555543322111111123455555555445555556
Q ss_pred HHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC---
Q 013228 143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--- 219 (447)
Q Consensus 143 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--- 219 (447)
+.++.++-.+..+. .........++..|....... +....+-.++.|++...... ..+..|..+|.+
T Consensus 195 ~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~ 264 (464)
T PF11864_consen 195 EACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDP 264 (464)
T ss_pred HHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCc
Confidence 66776666666554 333333344555555443322 56666777888888543322 235677777732
Q ss_pred ---CCchhHhHHHHHHHHhhcCChhh-HHHHHhcC--ChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 220 ---PSPSVLTRALQTVVNIAAGDDFQ-TQCIINCG--ALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 220 ---~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~--~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
.+..+.+-|+..+..+..+.... ...+--.- +++.+...++.+ +..+-.+....+.++..
T Consensus 265 ~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 265 QNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD 330 (464)
T ss_pred cccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence 23455667888888887655221 11111122 677888888877 77777777777777763
No 211
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.39 E-value=0.68 Score=42.79 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hc--CCCCchhHhHHHHHHHHhhcCChh------------hHH
Q 013228 180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE-LL--GHPSPSVLTRALQTVVNIAAGDDF------------QTQ 244 (447)
Q Consensus 180 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~-lL--~~~~~~v~~~a~~~l~~l~~~~~~------------~~~ 244 (447)
..-+..|+..+..++.........++. +.+..++. .- ...++.-+..|+..++.++..... ...
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 556777888888888543322221111 12222222 11 235677788899999999864421 123
Q ss_pred HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317 (447)
Q Consensus 245 ~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL 317 (447)
.+....++|-|. -..+..+-++..|++.+...-..-+. +.+.. ++|.++..|.+++.-|...|+.++
T Consensus 304 ~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~--~~l~~--~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK--EQLLQ--IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHHH--HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH--HHHHH--HHHHHHHHhCCCCcchhhhhhhhC
Confidence 344455556554 12222778999999999988664322 22222 799999999999999999998775
No 212
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.38 E-value=0.51 Score=38.46 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCC-Chh----hHHHHHhC------CCh-HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 013228 56 LQFEAAWALKNIVSG-TSE----DTKVVIDH------GAV-PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSE 123 (447)
Q Consensus 56 v~~~a~~~L~~l~~~-~~~----~~~~~~~~------~~i-~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 123 (447)
+|..|+.+|..++.. ++. +...+.-. +.- ..+..++.++++.+|..|+.++..+-.+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 577777888777774 211 11111111 123 334446678899999999999999987654432222111
Q ss_pred C----C---------------HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh--hhHhhhHHHHHHhhccCChhH
Q 013228 124 E----A---------------LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF--DQVRPALPALAQLVHSNDKEV 182 (447)
Q Consensus 124 ~----~---------------l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~l~~ll~~~~~~v 182 (447)
+ . -..|+..|....+..+....+.++..+....|..+. .....++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 1 223444454556778888999999999988754443 344677777788888999999
Q ss_pred HHHHHHHHHHhccC
Q 013228 183 MTDACRALFYLSEG 196 (447)
Q Consensus 183 ~~~al~~l~~l~~~ 196 (447)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998877743
No 213
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.36 E-value=1.9 Score=40.69 Aligned_cols=261 Identities=14% Similarity=0.111 Sum_probs=141.2
Q ss_pred HHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-
Q 013228 15 EATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS- 93 (447)
Q Consensus 15 ~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~- 93 (447)
-....|..+.........+..+....+..|+.++.+++ +.-|.....+|..+-......|..+.. .+...+.+++..
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~ 186 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYET 186 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCc
Confidence 34445555554432222555677778999999999999 999999999999887655566665554 355666666654
Q ss_pred CCHHHHHHHHHHHHHhhcCCh-hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHH
Q 013228 94 PSDDIREQAVCALGNVAADSA-RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALA 172 (447)
Q Consensus 94 ~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~ 172 (447)
....-...++..++.+..+-. +.++.-.. -....++.+.+...-.........++..+...++. ....++..++
T Consensus 187 ~~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~ll 261 (409)
T PF01603_consen 187 ERHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLL 261 (409)
T ss_dssp S--STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHH
Confidence 345556677777777765321 11111000 00122333332222233344455555555543321 1223333333
Q ss_pred HhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhc--C
Q 013228 173 QLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINC--G 250 (447)
Q Consensus 173 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~ 250 (447)
+.=-..++.-..--+.-+..+...-+...-.-+...++..+...+.+++..|.+.|+..+.| +.....+.+. .
T Consensus 262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~ 336 (409)
T PF01603_consen 262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRV 336 (409)
T ss_dssp HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHH
T ss_pred HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHH
Confidence 33334455545555556666654433221112233467788888899999999888876542 3222222111 2
Q ss_pred ChHHHHHhhc-----cCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 013228 251 ALPYLLGLLI-----HNHKKSIKTDACWTISNITAGNSEHIQA 288 (447)
Q Consensus 251 ~l~~l~~~l~-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 288 (447)
+++.+...+. |- +..++..|..++..+..-+++....
T Consensus 337 i~p~i~~~L~~~~~~HW-n~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHW-NQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHSSTTSS-S-STTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4566666553 34 7789999999999888776664444
No 214
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.23 Score=46.94 Aligned_cols=150 Identities=13% Similarity=0.155 Sum_probs=98.3
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEF-LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~l-l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
+++.+.|+-++..++..+..--.+.. ..|++..|+.. .++.+ ++||+.|+-+|+-+|..++.
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~~-------- 585 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDRD-------- 585 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCcc--------
Confidence 35677778888888877776555531 24678888887 55666 89999999999998885543
Q ss_pred CChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 82 GAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 82 ~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.+...+++|. +.++.+|...+.+|+-.|...-.. .-..++.-|..+++.-+++.|+-++.-+.......-
T Consensus 586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 4555666665 468999999999999888654321 112233334366666788888888877765542322
Q ss_pred hhhHhhhHHHHHHhhccC
Q 013228 161 FDQVRPALPALAQLVHSN 178 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~ 178 (447)
.....++...+.+.+.+.
T Consensus 657 np~v~~I~k~f~~vI~~K 674 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred ChhHHHHHHHHHHHHhhh
Confidence 333455555555555543
No 215
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.33 E-value=0.11 Score=50.22 Aligned_cols=133 Identities=16% Similarity=0.133 Sum_probs=100.1
Q ss_pred CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Q 013228 220 PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298 (447)
Q Consensus 220 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L 298 (447)
.++.++..|.-+|..+.+-+...+. .-+|.++..+. ++ +|.+|..|+..++.++..-...... .-..|
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p-~P~IR~NaVvglgD~~vcfN~~~de-----~t~yL 976 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHP-IPRIRANAVVGLGDFLVCFNTTADE-----HTHYL 976 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCC-CcceeccceeeccccceehhhhhHH-----HHHHH
Confidence 6788899999999988776654433 36788999997 56 9999999999998876542222221 34557
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 299 ~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
.+-|.+.+..||+.+.-.+.++...+. +--.|.+..+..+|.++|.++...|--.+..+...+..
T Consensus 977 yrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 977 YRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 777888899999999999999887542 22357788889999999998888887777777765544
No 216
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.22 E-value=0.51 Score=47.88 Aligned_cols=189 Identities=14% Similarity=0.072 Sum_probs=128.0
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHH
Q 013228 169 PALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCII 247 (447)
Q Consensus 169 ~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 247 (447)
+.+-.-+.+.+..-+..++..+........ ....-...+.+..++... .+.+..+...++.+|.-++......... .
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-Y 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-H
Confidence 344445567888889899888887775543 100011123344444443 5667788888999999998765544332 2
Q ss_pred hcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHH
Q 013228 248 NCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHE 327 (447)
Q Consensus 248 ~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~ 327 (447)
..++.+.+++-+... ...++..+..++-.++...+- ..+.+.+...+..+++.++..+...+.......++.
T Consensus 334 ~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 236788888888887 788888777776665543221 226777888899999999999888887776654322
Q ss_pred HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 328 QIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 328 ~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
....-.-.+.++.++....+.+.+++.++..++..+++.-
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 2222223457888888889999999999999999988753
No 217
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=2.1 Score=41.96 Aligned_cols=185 Identities=15% Similarity=0.138 Sum_probs=118.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCC-Ch----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228 42 PRFVEFLMREDYPQLQFEAAWALKNIVSG-TS----EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC 116 (447)
Q Consensus 42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~----~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~ 116 (447)
|.|-+-|+-++ ..||..|+..+.++-.- ++ +..+.+++. -...+..+|+++.+.+|..|+..++.+... +
T Consensus 177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f 251 (1005)
T KOG1949|consen 177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK---F 251 (1005)
T ss_pred HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH---H
Confidence 34445566777 79999999999997541 22 334445543 367788999999999999988888776532 2
Q ss_pred HHHHHh---cCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228 117 RDLVLS---EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL 193 (447)
Q Consensus 117 ~~~~~~---~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l 193 (447)
-+.+.. ...+..+..-+..++..+++......|..+..++ ..-.....++|.+-..+.+..+.|+..+...|..+
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 222111 1123444444545666788888888888888764 22233466778888888999999999988888766
Q ss_pred ccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhh
Q 013228 194 SEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIA 236 (447)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~ 236 (447)
-.... ..+.+---++.++..|..++..+.+.-+..+-+.+
T Consensus 330 k~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 330 KAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred Hhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 53221 12222233455666666666555555555554443
No 218
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.15 E-value=3.3 Score=39.91 Aligned_cols=290 Identities=12% Similarity=0.061 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK 89 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 89 (447)
-..|..|+..|...+..-+-..+.. +-...-.++......+.|..+...|..++........ ... ..+..
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence 4567888888888776532211211 2223335565555578999999999998874433111 111 11222
Q ss_pred hhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccc--------------------------cchhHH
Q 013228 90 LLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKH--------------------------AKLSML 142 (447)
Q Consensus 90 ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~--------------------------~~~~~~ 142 (447)
.+.. ..++-...-+.+|..|+.+.... ...+.+..+.+..-+... .+....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 2232 33333345566666666554433 113455555555544210 022334
Q ss_pred HHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC
Q 013228 143 RIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVH-SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP 220 (447)
Q Consensus 143 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 220 (447)
...+..+.++.... .........+++..++.+.. ..++.....++..+..+.....--...+ ..++..|.....
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl--~~~i~vLCsi~~-- 227 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL--SPCIEVLCSIVN-- 227 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH--HHHHHHHhhHhc--
Confidence 44555666666555 33344455666666666643 3345555666666655543221111111 023344444432
Q ss_pred CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-c--
Q 013228 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN-----HKKSIKTDACWTISNITAGNSEHIQAVID-A-- 292 (447)
Q Consensus 221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~-- 292 (447)
.......+-.++.||+...-.. ..+..|..+|.++ .+..+.+-|+..+..+..+..+....-+. .
T Consensus 228 ~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~ 300 (464)
T PF11864_consen 228 SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPS 300 (464)
T ss_pred ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHH
Confidence 2367777888999998754322 1345677777322 14455667888888877654222111121 2
Q ss_pred CChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 293 GLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
-+++.+...++.+++.+-.+....+.++..
T Consensus 301 ~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 301 SVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 278888888888888777788888877773
No 219
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.81 Score=44.62 Aligned_cols=231 Identities=13% Similarity=0.082 Sum_probs=134.3
Q ss_pred hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc--C
Q 013228 122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE--G 196 (447)
Q Consensus 122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~--~ 196 (447)
+.++++.++..-...+...+-...-.+|+.+.... .........-.-|.+.+-|+-.+..|+.+|+..+.+.-- .
T Consensus 127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d 206 (1005)
T KOG1949|consen 127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD 206 (1005)
T ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence 56677777776544333333333334444444332 111111223344667788889999999999999988873 2
Q ss_pred Cc---HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcC----ChHHHHHhhccCCchhHHH
Q 013228 197 TN---DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCG----ALPYLLGLLIHNHKKSIKT 269 (447)
Q Consensus 197 ~~---~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~l~~~l~~~~~~~v~~ 269 (447)
++ +....+++. -...+..+|+++-+.+|..|..-+..+... ...++-.. ++..+..-+......+||-
T Consensus 207 pd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~ 281 (1005)
T KOG1949|consen 207 PDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRC 281 (1005)
T ss_pred CCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheeh
Confidence 22 122333333 357788999999999999887766655431 11122112 3333333333333568888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC
Q 013228 270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD 349 (447)
Q Consensus 270 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 349 (447)
.....|..+.... ....+++. ++|.+-..+.+....||..+...|..+-... ...+..--..+.++.-|...+
T Consensus 282 svf~gl~~~l~np--~sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr----a~~f~~I~~~d~~l~~L~~d~ 354 (1005)
T KOG1949|consen 282 SVFKGLPMILDNP--LSHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAVR----AAKFWKICPMDHILVRLETDS 354 (1005)
T ss_pred hHhcCcHHHHcCc--cchhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhhh----hhhhhccccHHHHHHHHhccc
Confidence 8888888776642 12233443 5667777788888999999998888774321 222333334666777777766
Q ss_pred HHHHHHHHHHHHHHH
Q 013228 350 PEIVTVFLKGLEKIL 364 (447)
Q Consensus 350 ~~~~~~a~~~l~~l~ 364 (447)
..+....+..+.+.+
T Consensus 355 ~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 355 RPVSRRLVSLIFNSF 369 (1005)
T ss_pred cHHHHHHHHHHHHhh
Confidence 655555444444443
No 220
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.06 E-value=0.15 Score=36.25 Aligned_cols=73 Identities=12% Similarity=0.024 Sum_probs=59.2
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228 167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 167 ~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
.+...+..+.++.+.+|.+++..|+.+....+ .......+++..+...|+++++-+-..|+.++..++...+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34566777889999999999999999997766 11223346788899999999999999999999999976664
No 221
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.03 E-value=2.3 Score=40.37 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=110.9
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCc---hhHHHHHHHHHHHHhcCCHHHH
Q 013228 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHK---KSIKTDACWTISNITAGNSEHI 286 (447)
Q Consensus 210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~---~~v~~~a~~~l~nl~~~~~~~~ 286 (447)
...+..++.+++..-+..++..+..++. .......++...++..|..++.++.. .++......+++.+..++--..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4566777888888878788888888876 44567789999999999999987722 2444444444444433221111
Q ss_pred HHHHHcCChHHHHHHHh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228 287 QAVIDAGLIGPLVNLLQ--NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 287 ~~l~~~~~~~~L~~~l~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~ 364 (447)
..+...++..+..+.+ ..+..+-..|+..|-++.... ......+.+.-.+..|+..+...+..+...|+..+..++
T Consensus 164 -~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 -ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS-DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred -eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC-hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1112234444444443 236677788888888888763 445567777788999999999999999999999999998
Q ss_pred Hhhhhhhhh
Q 013228 365 KVGEAEKNM 373 (447)
Q Consensus 365 ~~~~~~~~~ 373 (447)
......+.+
T Consensus 242 ~~a~~~~R~ 250 (713)
T KOG2999|consen 242 RKAPDDKRF 250 (713)
T ss_pred hhCChHHHH
Confidence 877665433
No 222
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=4.3 Score=40.48 Aligned_cols=341 Identities=11% Similarity=0.076 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh--CCChHHHH
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID--HGAVPIFV 88 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~ 88 (447)
-+++..+|.+....+-..+...+ .-+-..++++++..++.-++..+++++.-...+-.-..+.+.. ......+.
T Consensus 502 iiRRRVa~ilg~Wvsvq~~~e~k----~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf 577 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSVQQKLELK----PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF 577 (978)
T ss_pred HHHHHHHHHHhhhhheechHhHH----HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH
Confidence 46677777777776532111111 1244567788888854778888999998888743222222221 23444555
Q ss_pred HhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHh----ccccchh-HHHHHHHHHHHhcCCCCCCChh
Q 013228 89 KLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQL----NKHAKLS-MLRIATWTLSNFCAGKPKPIFD 162 (447)
Q Consensus 89 ~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l----~~~~~~~-~~~~a~~~L~~l~~~~~~~~~~ 162 (447)
.++.. ..-+.+...+..|+.+.....+. +. .....+++.+ ..++... ++...+.++.++...-......
T Consensus 578 kll~~~~e~Dtk~~VL~~ls~lI~r~~e~---I~--P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~ 652 (978)
T KOG1993|consen 578 KLLKAVEECDTKTSVLNLLSTLIERVSEH---IA--PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFE 652 (978)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHh---hh--HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCcc
Confidence 55554 45667777788888776432221 11 1122233332 2233333 4555677788887654333333
Q ss_pred hHhhhHHHHHHhhccCC---hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228 163 QVRPALPALAQLVHSND---KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239 (447)
Q Consensus 163 ~~~~~l~~l~~ll~~~~---~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 239 (447)
...-.+|.+-....-+. .-..+++...-.....+.+.....+. +++|.+...+....+. ...++.++....--+
T Consensus 653 ~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd 729 (978)
T KOG1993|consen 653 FYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLD 729 (978)
T ss_pred chHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhc
Confidence 33444444433333222 22344444333222233322222222 4677777777544332 233444444333222
Q ss_pred hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCchhHHHHHHHHH
Q 013228 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ--NAEFDIKNWAARAI 317 (447)
Q Consensus 240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~--~~~~~v~~~a~~aL 317 (447)
....-.-...|+.+.+.+++.+- ..+-....+.++..+...++ ..+.....++++.+..-+- .+.|.+...-...+
T Consensus 730 ~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vv 807 (978)
T KOG1993|consen 730 NTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVV 807 (978)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHH
Confidence 21111122346777777777655 44444555566666655543 5666667788888777654 34577777777788
Q ss_pred HHhcCCCCHHHH-HHHHHcCChHHHHhh--------ccC-CCHHHHHHHHHHHHHHHHh
Q 013228 318 SNATFGGTHEQI-KYLVREGCIKPLCDL--------LLC-ADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 318 ~~l~~~~~~~~~-~~l~~~~~l~~L~~l--------l~~-~~~~~~~~a~~~l~~l~~~ 366 (447)
+.++.. +++.. ..+.+....+.++.. .++ .+++-++.-+-++..+++.
T Consensus 808 aRi~l~-n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t 865 (978)
T KOG1993|consen 808 ARISLR-NPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRT 865 (978)
T ss_pred HHHHhc-ChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence 888776 44443 333333333333321 111 3455555555555666553
No 223
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.94 E-value=0.14 Score=34.38 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 13 QLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 13 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
...|+|++.++.+. +.-...+.+.++++.++++..+.+...+|-.|..+|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 46799999999886 45566666789999999998766548999999999999998 677776666554
No 224
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.89 E-value=2.5 Score=37.20 Aligned_cols=202 Identities=14% Similarity=0.086 Sum_probs=135.3
Q ss_pred HHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh----hHHHHH-hcCChHHHHHhhccCCc-hhHHHHHHHHH
Q 013228 202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF----QTQCII-NCGALPYLLGLLIHNHK-KSIKTDACWTI 275 (447)
Q Consensus 202 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~-~~~~l~~l~~~l~~~~~-~~v~~~a~~~l 275 (447)
+.+.+.|.+..++..+..-+..-+..++.+..++-...-. ....+. +...+..++.- -.+ +++.-.+..++
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence 4577889999999999998999999999999988653221 111111 12233333333 212 44444444455
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC----hHHHHhhccCCCHH
Q 013228 276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGC----IKPLCDLLLCADPE 351 (447)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~ 351 (447)
..+.++ +...+.+....-+.....+++.+..++...|......+.... +.....+..... .+.-..++.+++.-
T Consensus 150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~H-k~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv 227 (342)
T KOG1566|consen 150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRH-KSVVAEFLIRNYDNFFAEVYEKLLRSENYV 227 (342)
T ss_pred HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHh-HHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence 554443 455566677778888899999898899888988888887754 233333333333 44466788889988
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228 352 IVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418 (447)
Q Consensus 352 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (447)
++..+++.+..++-...+... -...+.+..-++.+..++..++..++-.|=.+...+
T Consensus 228 tkrqs~kllg~llldr~N~~~----------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvf 284 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAV----------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVF 284 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHH----------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHH
Confidence 899999999999876655443 245555566788888998888888876666655443
No 225
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.87 E-value=0.79 Score=46.21 Aligned_cols=193 Identities=17% Similarity=0.115 Sum_probs=119.4
Q ss_pred HHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHH--HHHHhhccCCh-h
Q 013228 105 ALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP--ALAQLVHSNDK-E 181 (447)
Q Consensus 105 ~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~l~~ll~~~~~-~ 181 (447)
+++++....+..-..+.+.++...+...+......++...+...+.+++...+..........+. ..-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 77788888877777888999999999999767778899999999999997764333333322222 33334444444 6
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC-ChhhHHHHHhcCChHH-HHHhh
Q 013228 182 VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG-DDFQTQCIINCGALPY-LLGLL 259 (447)
Q Consensus 182 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~-l~~~l 259 (447)
.-..++..+..+...++.... ...+..+...+...... .......... ..+.. +..++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVIND-RSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhh-hhcchhHHHHh
Confidence 677777777776654432111 11122222222222111 1111111222 22333 66667
Q ss_pred ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-chhHHHHHHHHH
Q 013228 260 IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA-EFDIKNWAARAI 317 (447)
Q Consensus 260 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~v~~~a~~aL 317 (447)
..+..+.....|.|++.+++...++..+.+.+.++++.+.+.-... ..+++..+...+
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 6655788999999999999998888888888899988877764422 445555554444
No 226
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.86 E-value=0.082 Score=43.82 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=67.4
Q ss_pred HHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC--------CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228 15 EATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR--------EDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI 86 (447)
Q Consensus 15 ~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 86 (447)
..+..|...+...+..-.+.+++.|++..|+++|.. ..+.++...++.||..+..........+-..+++..
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~ 162 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNL 162 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHH
Confidence 344444444544322336778888999999988753 122578999999999999844443444444689999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhh
Q 013228 87 FVKLLASPSDDIREQAVCALGNVA 110 (447)
Q Consensus 87 L~~ll~~~~~~i~~~a~~~L~~l~ 110 (447)
|+..+.+++..++..++..|..+|
T Consensus 163 i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 163 IALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999887
No 227
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.78 E-value=2 Score=40.76 Aligned_cols=166 Identities=11% Similarity=0.065 Sum_probs=111.7
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc----hhHhHHHHHHHHhhcCChh
Q 013228 166 PALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP----SVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 166 ~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~----~v~~~a~~~l~~l~~~~~~ 241 (447)
.....+...+.+++..-+..++.-+..++... .....++...++..|.+++.+... .+...+++++..+....-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 34556788888888877777888888888544 456778889999999999977543 555666666666554322
Q ss_pred hHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 242 QTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
.........++.....+..-. .+..+-..|...+-++..++....+.+.+.--+..|+..++..+..++..|...+..+
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 111111122233333333211 1456667788888888877766677777888899999999999999998888888777
Q ss_pred cCCCCHHHHHHHH
Q 013228 321 TFGGTHEQIKYLV 333 (447)
Q Consensus 321 ~~~~~~~~~~~l~ 333 (447)
.....++.+..+.
T Consensus 241 ~~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 241 FRKAPDDKRFEMA 253 (713)
T ss_pred HhhCChHHHHHHH
Confidence 7766555444443
No 228
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.70 E-value=5.7 Score=40.63 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh
Q 013228 96 DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV 175 (447)
Q Consensus 96 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll 175 (447)
+.++..+.-+|+++|-......+ ..+|.+++-|..+.+..++-+..-++..+|... ..+....+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 56788899999999955443322 347889999977777777777777777777432 334567889999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 176 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
.++++-++.+++-.|.++.+..--+. +..++-.++.-+-+.+++++.-|=.+++.+..
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw----~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKW----NGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhc----chhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999985432221 22233444444556778888888888887754
No 229
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.68 E-value=0.5 Score=38.96 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=83.0
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhh----------------hccCCHHHHHHhhcC-----CCCHHHHHHHHH
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEV----------------IPFGVVPRFVEFLMR-----EDYPQLQFEAAW 62 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~~v~~L~~ll~~-----~~~~~v~~~a~~ 62 (447)
.+.+++....-.++..|.|++..+ .....+ .+...+..|+.++.. .+..+-....+.
T Consensus 3 ~i~~~~~~~adl~~MLLsNlT~~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~ 80 (192)
T PF04063_consen 3 YITDPKSPLADLACMLLSNLTRSD--SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLAS 80 (192)
T ss_pred eecCCCcchHHHHHHHHHHhccch--HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHH
Confidence 344555555566777777777642 222211 123367777777755 121345677889
Q ss_pred HHHHHcCCChhhHHHHHhCC--C--hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHh--cCCHHHHHHHh
Q 013228 63 ALKNIVSGTSEDTKVVIDHG--A--VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS--EEALIPLLTQL 133 (447)
Q Consensus 63 ~L~~l~~~~~~~~~~~~~~~--~--i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l 133 (447)
+|.|++. .++.|..+.+.. . +..|+.++++.+..-|..++.+|.|+|.+.......+.. .++++.++--|
T Consensus 81 vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 81 VLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9999999 889999998763 4 778888888887888889999999999887654333322 24455444444
No 230
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.66 Score=40.55 Aligned_cols=146 Identities=20% Similarity=0.209 Sum_probs=101.6
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 244 (447)
...+...+..|.+.+......++..+..++....+.....+. .++-.+++-+++....|-+.|+.+++.+.........
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888899999999999999999665544333332 3566777778888899999999999999865544333
Q ss_pred HHHhcCChHHHHHhhcc---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228 245 CIINCGALPYLLGLLIH---NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321 (447)
Q Consensus 245 ~~~~~~~l~~l~~~l~~---~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~ 321 (447)
. -++.++..|.+ ..+..++..|-.+|..+..+-.. ..+++.|+..+....+.++..++.++.+..
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2 23334433321 11567888898888888764222 125777888888888999988887776665
Q ss_pred CC
Q 013228 322 FG 323 (447)
Q Consensus 322 ~~ 323 (447)
..
T Consensus 234 ~r 235 (334)
T KOG2933|consen 234 IR 235 (334)
T ss_pred ee
Confidence 43
No 231
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.49 E-value=0.78 Score=37.87 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=75.7
Q ss_pred cCCCCchhHhHHHHHHHHhhcCChhhHHHHHh----------------cCChHHHHHhhccC-----CchhHHHHHHHHH
Q 013228 217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN----------------CGALPYLLGLLIHN-----HKKSIKTDACWTI 275 (447)
Q Consensus 217 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~l~~l~~~l~~~-----~~~~v~~~a~~~l 275 (447)
+.+++......++..|+|++..... ...+++ ...+..|+..+..+ ....--...+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 3445556667788888888875542 232332 22456677766551 1334456788899
Q ss_pred HHHhcCCHHHHHHHHHc--CC--hHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013228 276 SNITAGNSEHIQAVIDA--GL--IGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR 334 (447)
Q Consensus 276 ~nl~~~~~~~~~~l~~~--~~--~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 334 (447)
.|++.. ++.++.+++. +. +..|+.++++.+..-|.-++.+|.|++.. .+.-..+..
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~ 142 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS 142 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence 999664 6778888753 34 78888888888777788899999999985 344455444
No 232
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.27 E-value=0.54 Score=38.92 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc----CCCCHHHHHHHHHHHHHHcCC-ChhhHHHHHhCCCh
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM----REDYPQLQFEAAWALKNIVSG-TSEDTKVVIDHGAV 84 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~----~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i 84 (447)
..-...|+..|..++++ ++....+.++.+--.+-..|. +...+-+|..++.+++.+... +++....+....++
T Consensus 114 snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 114 SNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred hhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 44456677777777877 677777777654333334432 222356888999999999874 45556677778999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARC 116 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~ 116 (447)
|..++.++..++--+..++.++..+..++...
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvGL 223 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGL 223 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchhH
Confidence 99999999998888989999998888776543
No 233
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.26 E-value=6.1 Score=38.98 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=77.9
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
|.+..+++-..+++ ..||..++..|..+.....+..+. +-.++...+..-+.+..+.+|.+|+.+|+.+-.++..-
T Consensus 85 ~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~eidd~-vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKD-KKVRFRVLQILALLSDENAEIDDD-VFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccccCHH-HHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 45566666667777 799999999999998844443333 33466777777777888999999999999997543221
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHH
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLS 150 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~ 150 (447)
+..++..+..++.++++.++++.++..+.
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 33467788888888999999998875554
No 234
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=10 Score=42.04 Aligned_cols=229 Identities=14% Similarity=0.089 Sum_probs=120.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCChhh
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQ 163 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~ 163 (447)
..++..+..+++..+..+..+++.++..-+.. .. -....+..+..+....|+-.|.--..++..+-++. .......
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 44445555677888888888888887432210 01 11234556666655556655555666666666655 2333344
Q ss_pred HhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CC--chhHhHHHHHHH------
Q 013228 164 VRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PS--PSVLTRALQTVV------ 233 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~--~~v~~~a~~~l~------ 233 (447)
....+..+..+-+++ ++.|+..++.++.-+...........+ ...+..+..+|-+ +. .++...--+++.
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~v-e~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ 1034 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLV-EPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDED 1034 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhH-HHHHHHHHHHcCCCCcchhhhhhhhccccccchhHH
Confidence 456677777777766 469999999999988865544333222 2334444445433 22 122222222221
Q ss_pred Hh-------hcCChh--hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 013228 234 NI-------AAGDDF--QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304 (447)
Q Consensus 234 ~l-------~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~ 304 (447)
++ ...+.. .... +....+-...-++.++ +..++.++..++-++-...+.... -.-+++.+..++.+
T Consensus 1035 alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1035 ALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 11 111111 1111 1111122222334455 888888998888877653332111 11256667776666
Q ss_pred CchhHHHHHHHHHHHhcC
Q 013228 305 AEFDIKNWAARAISNATF 322 (447)
Q Consensus 305 ~~~~v~~~a~~aL~~l~~ 322 (447)
...-.|.....++..+..
T Consensus 1110 ~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred hhhhhhhhHHhhhhHHhH
Confidence 555555555555555544
No 235
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.18 E-value=1.8 Score=42.45 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=96.3
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCCh
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
.....++|.|...+++.+..++..++..+..+++.-+. .+++.-++|.+..+- .+.+..++..++-|++.++..-+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999998866552 355666788887774 55778899999999998883221
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK 310 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~ 310 (447)
...-...+..+.+..+.. ++.+......+..++....... ..++-..++|.++.+...+.-...
T Consensus 462 ----~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 462 ----KAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred ----HHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHH
Confidence 111112344455555566 7888877777777776533222 344556688888888776554433
No 236
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.32 Score=42.38 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=100.8
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 013228 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI 205 (447)
Q Consensus 126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 205 (447)
+...+..| .+.++.....++..+..|+...++........++..+++-+++....|-..|+.++..+...-.+.+....
T Consensus 90 l~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 90 LKQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666 67788888888888888887765555555677888888899999999999999999998865444333211
Q ss_pred HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 206 EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 206 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
+ +.+..|..--..++..++..|-.+|..++...... .+++.|+..+.+. .+.++..++.+..++..
T Consensus 169 d-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 169 D-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred H-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 1 12222222223355678888999998887644322 2566788888888 88999888887777654
No 237
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=7 Score=38.82 Aligned_cols=281 Identities=14% Similarity=0.078 Sum_probs=161.6
Q ss_pred CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhc--CChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH
Q 013228 81 HGAVPIFVKLLAS--------PSDDIREQAVCALGNVAA--DSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS 150 (447)
Q Consensus 81 ~~~i~~L~~ll~~--------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~ 150 (447)
.|+++.+...+.. +++.-.+.|++.++++.. ..+....-+++.-+++.++..+ ++.---++..+|..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence 3788888888832 234556688888888764 2111222333433455555555 5555567788999999
Q ss_pred HhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCCCCchhHhH
Q 013228 151 NFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA---GVCPRLVELLGHPSPSVLTR 227 (447)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~ 227 (447)
.+..+ -........+......++++++-.++..|..++..+..+... ...... +.++.|+.+-+.-+.++...
T Consensus 486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~--h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQS--HEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhh--hHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 88443 344445567778888888888888998888888877755422 222222 44555665555544444444
Q ss_pred HHHHH-HHhhcCChhhHHHHHh---cCChHHHHHhhccCC-----chhHHHHHHHHHHHHhc------CCHHHHHHHHHc
Q 013228 228 ALQTV-VNIAAGDDFQTQCIIN---CGALPYLLGLLIHNH-----KKSIKTDACWTISNITA------GNSEHIQAVIDA 292 (447)
Q Consensus 228 a~~~l-~~l~~~~~~~~~~~~~---~~~l~~l~~~l~~~~-----~~~v~~~a~~~l~nl~~------~~~~~~~~l~~~ 292 (447)
++..+ ...+..-......+.. ..++.....++..+. ..+-+..|.+.|..+.+ ..+...+.+..
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~- 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV- 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH-
Confidence 44332 2222211111111111 133344444444331 11233445555554432 34444444433
Q ss_pred CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH-HHHHHHHHHHHHHHHhhhhh
Q 013228 293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP-EIVTVFLKGLEKILKVGEAE 370 (447)
Q Consensus 293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~~~~~a~~~l~~l~~~~~~~ 370 (447)
...|.+--++...-.++-.+|+..+-+.+.. ..+.... -=|+.+.+.+++.+... .-...+..++.|++..+.+.
T Consensus 641 slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~pi--mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 641 SLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEPI--MWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhhh--hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccc
Confidence 3667666667777778888888888776653 1222211 12577888888888764 66677888999999888553
No 238
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.00 E-value=8.4 Score=43.28 Aligned_cols=270 Identities=9% Similarity=0.048 Sum_probs=144.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhH---HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHH
Q 013228 93 SPSDDIREQAVCALGNVAADSARC---RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP 169 (447)
Q Consensus 93 ~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 169 (447)
+++..++..|+..|..++..--+. ...-.+...+.++...+.+..+.++++..+.++.++..........-...++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 346678888888888877321111 11112334677888888777788999999999998875542111111233444
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCcHH-----HHHHHHhCcHHHHHHhcCCC-CchhHhHHHHHHHHhhcCC----
Q 013228 170 ALAQLVHSNDKEVMTDACRALFYLSEGTNDE-----IQAVIEAGVCPRLVELLGHP-SPSVLTRALQTVVNIAAGD---- 239 (447)
Q Consensus 170 ~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~-----~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~---- 239 (447)
.+.....+.++.+...+..++..+....-.. ...+. ..+..+..+.... +..+-..|+..|++++..-
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 4444445666777777777776665321100 00111 2344455554332 3556666666666552100
Q ss_pred h-----------------------hhH-----HHHHhcCChHHHHH---hhccCCchhHHHHHHHHHHHHhc-----CCH
Q 013228 240 D-----------------------FQT-----QCIINCGALPYLLG---LLIHNHKKSIKTDACWTISNITA-----GNS 283 (447)
Q Consensus 240 ~-----------------------~~~-----~~~~~~~~l~~l~~---~l~~~~~~~v~~~a~~~l~nl~~-----~~~ 283 (447)
- ... ........++.|.. +..+. +.+||..|..+|-.+.. -++
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~ 1384 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSL 1384 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCH
Confidence 0 000 00001123344433 34555 89999999998877664 134
Q ss_pred HHHHHHHHcCChHHHHHHHhcC-------------------ch----hHHHHHHHHHHHhcCCCCHHHHHHHH--HcCCh
Q 013228 284 EHIQAVIDAGLIGPLVNLLQNA-------------------EF----DIKNWAARAISNATFGGTHEQIKYLV--REGCI 338 (447)
Q Consensus 284 ~~~~~l~~~~~~~~L~~~l~~~-------------------~~----~v~~~a~~aL~~l~~~~~~~~~~~l~--~~~~l 338 (447)
+.+..++.. ++-.++..+... +. .+...+..+|..+..-- ..+...+- =.+++
T Consensus 1385 ~~W~~if~~-VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf-t~fFd~L~~~L~~~l 1462 (1780)
T PLN03076 1385 PLWERVFES-VLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF-VKFYPTVNPLLKKVL 1462 (1780)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 555555553 455555554311 00 12233444444443210 11112111 12566
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 339 KPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 339 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
..|..++..++..+...+..+|.+++...
T Consensus 1463 ~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1463 MLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 67777778888889999999999998654
No 239
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.89 E-value=0.76 Score=38.11 Aligned_cols=137 Identities=14% Similarity=0.076 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 013228 271 ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-----NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345 (447)
Q Consensus 271 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 345 (447)
|...+..+++ .|+....+++..+--.+...+. +..+.+|..+..+++.+..++++...+.+....+++.+.+++
T Consensus 120 aL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 120 ALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 3344445544 4677777777765444455554 234678999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH-----HHHHhcCCCHHHHHHHHHHHHHh
Q 013228 346 LCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK-----IENLRSHDNDEIHEKSVKILETY 418 (447)
Q Consensus 346 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----l~~l~~~~~~~v~~~a~~~l~~~ 418 (447)
+.+.+--+..++.++..++.++...+- .+..+++-.++.. ..++...++..+-+.+.++.-++
T Consensus 199 e~gSElSktvaifI~qkil~dDvGLqY----------iCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRL 266 (315)
T COG5209 199 ELGSELSKTVAIFIFQKILGDDVGLQY----------ICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRL 266 (315)
T ss_pred HhhhHHHHHHHHHHHHHHhccchhHHH----------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheee
Confidence 998887777888889988877655432 3555554433333 22344556666555555443333
No 240
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.88 E-value=5.7 Score=37.23 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=116.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---hhhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhc
Q 013228 42 PRFVEFLMREDYPQLQFEAAWALKNIVSGT---SEDTKVVIDHGAVPIFVKLLAS-------PSDDIREQAVCALGNVAA 111 (447)
Q Consensus 42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~-------~~~~i~~~a~~~L~~l~~ 111 (447)
..+..++...+ ++-|..|+....+++... ...++.+.++-+.+.+-+++.+ ++...+.-++..|..+|+
T Consensus 14 ~~~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 14 DDCLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhHHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 34566666666 688899999999998743 2356668888788888888865 345567777888888887
Q ss_pred CChh--HHHHHHhcCCHHHHHHHhccccchh------HHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhH-
Q 013228 112 DSAR--CRDLVLSEEALIPLLTQLNKHAKLS------MLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEV- 182 (447)
Q Consensus 112 ~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v- 182 (447)
.++- ..+.+ +.+|.++..+....|++ +...+..+|..++...+........|.++.+.++-.-++...
T Consensus 93 ~pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 93 VPELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred ChhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchh
Confidence 6532 12232 34888888886555544 888899999999988766666666899999987754333211
Q ss_pred HHHHHHHHH----HhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 183 MTDACRALF----YLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 183 ~~~al~~l~----~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
..-++..+. .+-..+.. ...+.. ++..+..=+...+...+...|+.|..+..
T Consensus 170 ~alal~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 170 MALALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 111222111 11111211 111221 13333333344556677778888885543
No 241
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.86 E-value=1.1 Score=42.71 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC
Q 013228 141 MLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP 220 (447)
Q Consensus 141 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 220 (447)
+.......+.+.-.+.|.. ...+.+.+..+++.+.+++..|+..++..|.-++..-.+ +...+-.+++..|.+.+-+.
T Consensus 67 il~fl~~f~~Y~~~~dpeg-~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR 144 (885)
T COG5218 67 ILSFLKRFFEYDMPDDPEG-EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR 144 (885)
T ss_pred HHHHHHHHHHhcCCCChhh-hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc
Confidence 3333333333333333332 445677888888888899999999999999988855433 23455567888888888889
Q ss_pred CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275 (447)
Q Consensus 221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l 275 (447)
.+.+|..|+.+|+.+-........ .....+..+++...+.+||+.|...+
T Consensus 145 E~~VR~eAv~~L~~~Qe~~~neen-----~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 145 EKAVRREAVKVLCYYQEMELNEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred hHHHHHHHHHHHHHHHhccCChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 999999999999887533221111 12335666676554788888775433
No 242
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.78 E-value=5.3 Score=36.52 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=111.9
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHHhhc-CChhhHHHHHhc-C-ChHHHHHhhccCC----c--------hhHHHHHHHH
Q 013228 210 CPRLVELLGHPSPSVLTRALQTVVNIAA-GDDFQTQCIINC-G-ALPYLLGLLIHNH----K--------KSIKTDACWT 274 (447)
Q Consensus 210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~-~-~l~~l~~~l~~~~----~--------~~v~~~a~~~ 274 (447)
+..+.+.|......+...+++.|..++. ........+... + -.+.+.+++.... . +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888988888889999999999998 444555555543 2 2344555553210 1 2788877766
Q ss_pred HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHH-hcCCC--CHHHHHHHHHcCChHHHHhhccCCC
Q 013228 275 ISNITA-GNSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISN-ATFGG--THEQIKYLVREGCIKPLCDLLLCAD 349 (447)
Q Consensus 275 l~nl~~-~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~ 349 (447)
+..+.. +++.....+++ .+.+..+.+-+..+++++....+.+|.. +.... .+.....+.+...+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 555554 66777777765 5678888888888889999999999885 44332 2333445566678899999888877
Q ss_pred H----HHHHHHHHHHHHHHHhh
Q 013228 350 P----EIVTVFLKGLEKILKVG 367 (447)
Q Consensus 350 ~----~~~~~a~~~l~~l~~~~ 367 (447)
+ .+...+-+.|..++...
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 7 88889999999988644
No 243
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.69 E-value=4.5 Score=35.43 Aligned_cols=214 Identities=16% Similarity=0.169 Sum_probs=122.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 013228 44 FVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRDLVL 121 (447)
Q Consensus 44 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 121 (447)
|=..|.+++ +.+|..|+..|..+...-+.. .....-+..|+.+..+ .+......++.++..|.....-..
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~---- 75 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP---- 75 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh----
Confidence 445678888 899999999999887644322 1222335566665543 456666666777777774332111
Q ss_pred hcCCHHHHHHHhcc-----ccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-CChhHHHHHHHHHHHhcc
Q 013228 122 SEEALIPLLTQLNK-----HAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS-NDKEVMTDACRALFYLSE 195 (447)
Q Consensus 122 ~~~~l~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~ 195 (447)
+....+++.+.+ ......|..+...+..+..+............+..+++.+.. .||.-...+...+..+..
T Consensus 76 --~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 --ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 113333333322 223456777777777777654211122235667777777764 478777777776666654
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcC---------CC-Cc--hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC
Q 013228 196 GTNDEIQAVIEAGVCPRLVELLG---------HP-SP--SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH 263 (447)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~lL~---------~~-~~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 263 (447)
.-+. ....+-+...+. .+ ++ -.+..--..|.+....++... .-.++.+++-|.++
T Consensus 154 ~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~- 220 (262)
T PF14500_consen 154 EFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST- 220 (262)
T ss_pred hccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-
Confidence 3321 122233333321 11 11 122333334444444444332 25788999999999
Q ss_pred chhHHHHHHHHHHHHhc
Q 013228 264 KKSIKTDACWTISNITA 280 (447)
Q Consensus 264 ~~~v~~~a~~~l~nl~~ 280 (447)
...+|..+..+|..++.
T Consensus 221 ~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 221 SPSVKLDSLQTLKACIE 237 (262)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 88899999999988776
No 244
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.57 E-value=7.4 Score=37.54 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=75.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
|.+..+++.+.+++ ..||..++.+|.-++.. -.-.+..+-.|.+..|.+-+-+..+.+|..|+.+|+.+-.....-
T Consensus 91 ~~~~h~lRg~eskd-k~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-- 166 (885)
T COG5218 91 GTFYHLLRGTESKD-KKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-- 166 (885)
T ss_pred HHHHHHHhcccCcc-hhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh--
Confidence 45666667777888 89999999999988873 333334455577788887777788999999999999987443321
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
+......+...+..+++.++++.++ .++..+
T Consensus 167 ---en~~~n~l~~~vqnDPS~EVRr~al---lni~vd 197 (885)
T COG5218 167 ---ENRIVNLLKDIVQNDPSDEVRRLAL---LNISVD 197 (885)
T ss_pred ---HHHHHHHHHHHHhcCcHHHHHHHHH---HHeeeC
Confidence 1123456677777788888988765 455444
No 245
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.54 E-value=0.45 Score=39.34 Aligned_cols=110 Identities=10% Similarity=0.164 Sum_probs=74.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHH-HcCCChhhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHh
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKN-IVSGTSEDTKVVIDHGAVPIFVKLLAS---------PSDDIREQAVCALGNV 109 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~i~~L~~ll~~---------~~~~i~~~a~~~L~~l 109 (447)
-...+++.+.+... .. ..+..|.. +-.........|++.||+..|+.+|.. .+......++.+|..+
T Consensus 67 ~p~~~i~~L~~~~~-~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRPS-TS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCc-cH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34556676766552 22 22222222 222344677888889999999998853 3557888999999999
Q ss_pred hcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhc
Q 013228 110 AADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFC 153 (447)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~ 153 (447)
..........+...+.+..++..| .+++..++..++..|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 877766555665677888888888 6788899999999998876
No 246
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.50 E-value=13 Score=40.26 Aligned_cols=148 Identities=15% Similarity=0.112 Sum_probs=91.6
Q ss_pred CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 013228 208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287 (447)
Q Consensus 208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~ 287 (447)
+++|.|..-|.+.+..+|..|...++.+......... =-........+.-+.+. +..+|.+++....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7889999999999999999999999999875543321 00113344555555666 889999999998888776555332
Q ss_pred HHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 288 ~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
... ....+.. .+.|+++|....-++..+.. ......+... .+..+.+-+.+....++..|+..|..+.+.
T Consensus 337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALRE--RDLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHHh--hcCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 211 1122221 23355554433322221111 1111222223 566666777888899999999999999874
No 247
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=9 Score=39.78 Aligned_cols=394 Identities=15% Similarity=0.132 Sum_probs=197.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CChhhHHHHHhC
Q 013228 5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS---GTSEDTKVVIDH 81 (447)
Q Consensus 5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~ 81 (447)
|.+++.+++...+..+.++-+.. +++-...-+.--+|.++.-+..-. ..+|...+.+|--... .-|+ +.
T Consensus 476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPe-qE----- 547 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPE-QE----- 547 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcH-HH-----
Confidence 45667777777777777776543 444444445566788877776555 4666666555443221 0111 11
Q ss_pred CChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccc-----cchhHHHHHHHHHHHhcCC
Q 013228 82 GAVPIFVKLLASP-SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKH-----AKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 82 ~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~~~~~a~~~L~~l~~~ 155 (447)
+-.|+-+|+.+ ...++...+.....|...+..+++.+.+.|.++.+...++++ +|.. .. .......
T Consensus 548 --LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy---sg---vsehydr 619 (2799)
T KOG1788|consen 548 --LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY---SG---VSEHYDR 619 (2799)
T ss_pred --HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh---hh---HHHHhhc
Confidence 22355566654 455666666677777777777888888999988888877542 1210 00 0111111
Q ss_pred C-CCCChhhH---hhhHHHHHHhhccCC--hhHH------HHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCch
Q 013228 156 K-PKPIFDQV---RPALPALAQLVHSND--KEVM------TDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPS 223 (447)
Q Consensus 156 ~-~~~~~~~~---~~~l~~l~~ll~~~~--~~v~------~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 223 (447)
. ........ ...+-.--.+.+++. ..+. ...-.+|..+..+..++.+.+.+..++..++.++ -+++
T Consensus 620 npss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--inde 697 (2799)
T KOG1788|consen 620 NPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDE 697 (2799)
T ss_pred CCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echH
Confidence 1 11111000 001100111222211 1111 1122355556666666667788888888888888 4556
Q ss_pred hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-----------chhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 013228 224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH-----------KKSIKTDACWTISNITAGNSEHIQAVIDA 292 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-----------~~~v~~~a~~~l~nl~~~~~~~~~~l~~~ 292 (447)
-|...++++..+....+.+.. +.-+-.++..|+++. .........+++..+..-+......+-+.
T Consensus 698 hRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgea 773 (2799)
T KOG1788|consen 698 HRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEA 773 (2799)
T ss_pred HHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhcc
Confidence 677888888888765554221 122334555555521 11233444555555543333334445566
Q ss_pred CChHHHHHHHhc----------CchhHHHHHHHHHH---HhcCCCCHHHHH-------------HHHHcCC---------
Q 013228 293 GLIGPLVNLLQN----------AEFDIKNWAARAIS---NATFGGTHEQIK-------------YLVREGC--------- 337 (447)
Q Consensus 293 ~~~~~L~~~l~~----------~~~~v~~~a~~aL~---~l~~~~~~~~~~-------------~l~~~~~--------- 337 (447)
+++..|...|.. +|.-+-.+-...|. .++...++.++. .+.+.|.
T Consensus 774 tGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~v 853 (2799)
T KOG1788|consen 774 TGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHV 853 (2799)
T ss_pred ccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHH
Confidence 777766665541 12111111122221 112111222222 2223331
Q ss_pred hHHHHh-hccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228 338 IKPLCD-LLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE 416 (447)
Q Consensus 338 l~~L~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (447)
+..|.+ .++.-.+.....-..++..+++...+.-.-..+.+..++..+.+-..|..+.|.+..-...|+++-.-..+++
T Consensus 854 iqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lle 933 (2799)
T KOG1788|consen 854 IQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLE 933 (2799)
T ss_pred HHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHH
Confidence 111111 0111111111122233445555443322112224667777888888999999988877777887777777776
Q ss_pred HhcC
Q 013228 417 TYWC 420 (447)
Q Consensus 417 ~~~~ 420 (447)
....
T Consensus 934 SlaR 937 (2799)
T KOG1788|consen 934 SLAR 937 (2799)
T ss_pred HHhh
Confidence 6544
No 248
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.34 E-value=2.7 Score=39.69 Aligned_cols=230 Identities=14% Similarity=0.058 Sum_probs=132.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
|+.++.|+|+.-|...-..|+++-.. -...+..+...+...+.+.+............++.++.+..+...--+.-..
T Consensus 138 Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~ 215 (409)
T PF01603_consen 138 LLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHK 215 (409)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHH
Confidence 35678999999999999999998876 3344455555577788888875554667788889999988753311111111
Q ss_pred CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC-C
Q 013228 81 HGAVPIFVKLLASPS-DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP-K 158 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~ 158 (447)
.=....|+.+...+. ......-..++..++..++.....+ +..++..- ...+..-...-+.-+..+...-+ .
T Consensus 216 ~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~W-P~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 216 QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHW-PKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS--SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCchhHHHHHHHHHHHHHhcCHH
Confidence 112244556655542 3445556666666665555432222 34444444 33333333334445555554332 1
Q ss_pred CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCC-----CCchhHhHHHH
Q 013228 159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA---GVCPRLVELLGH-----PSPSVLTRALQ 230 (447)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~-----~~~~v~~~a~~ 230 (447)
.-......+...+...+.+++..|.+.|+..+.| + ....++.. .+++.+...|.. =+..++..|..
T Consensus 290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~ 363 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQN 363 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1122335667778888899999998888865532 1 11222222 356777766633 24678999999
Q ss_pred HHHHhhcCChhhHH
Q 013228 231 TVVNIAAGDDFQTQ 244 (447)
Q Consensus 231 ~l~~l~~~~~~~~~ 244 (447)
++..+...++...+
T Consensus 364 vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 364 VLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHTTSHHHHH
T ss_pred HHHHHHHhCHHHHH
Confidence 99888877764433
No 249
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.16 E-value=5.1 Score=34.49 Aligned_cols=202 Identities=20% Similarity=0.163 Sum_probs=116.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 120 (447)
++.|+.-+....+++.+...+.+|..++.++..... -++..|..+...+....+..+.+.+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 445555344444489999999999999985412222 234667777777777777778888888875554322
Q ss_pred HhcCCHHHHHHHh---------ccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh-ccCChhHHHHHHHHH
Q 013228 121 LSEEALIPLLTQL---------NKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV-HSNDKEVMTDACRAL 190 (447)
Q Consensus 121 ~~~~~l~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l 190 (447)
+.+..++..+ ..+...+.......++..+|...|+ ....+++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444441 0112234444456788888887655 4466788888888 788899999999999
Q ss_pred HHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChh-hHHHHHhcCChHHHHHhhccC
Q 013228 191 FYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDF-QTQCIINCGALPYLLGLLIHN 262 (447)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~l~~~l~~~ 262 (447)
..++...- .+ +. .....+.+-++. ..+.+....+..+..+..+.-+ .........++..+-++..+.
T Consensus 147 ~~Lc~~~v--vd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEV--VD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhh--cc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 99983221 11 11 223444444433 3344444444444433322211 111123334556666666555
No 250
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.14 E-value=1.3 Score=36.06 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=73.0
Q ss_pred HHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh-------------------CcHHHHHHhcCC-CCchhHhHHHH
Q 013228 171 LAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA-------------------GVCPRLVELLGH-PSPSVLTRALQ 230 (447)
Q Consensus 171 l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~-------------------~~~~~L~~lL~~-~~~~v~~~a~~ 230 (447)
+.-++.++++++|..|+.++..+.++........-+. .+-..|+..|.. .+..+....++
T Consensus 45 lt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK 124 (182)
T PF13251_consen 45 LTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLK 124 (182)
T ss_pred hHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4456778899999999999999987654333221111 112234444543 56778889999
Q ss_pred HHHHhhcCChhhHHH-HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228 231 TVVNIAAGDDFQTQC-IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG 281 (447)
Q Consensus 231 ~l~~l~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~ 281 (447)
++..++...+..+-. -+-..++..+..++.+. |..++..+..+++.+...
T Consensus 125 ~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 125 CLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 999999887754221 11123445555666777 999999999999988763
No 251
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=92.92 E-value=2.6 Score=31.77 Aligned_cols=99 Identities=11% Similarity=0.209 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHH
Q 013228 306 EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQ 385 (447)
Q Consensus 306 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 385 (447)
+...--....-|.+++.. ++..... +++.|..=|++.++.+...++.+|..++..+... |..
T Consensus 14 ~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~ 75 (122)
T cd03572 14 DEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKR 75 (122)
T ss_pred CCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHH
Confidence 333334445556666665 3333333 5788888888888999899999999999887543 444
Q ss_pred HHH-HhchHHHHHHHhcC--------CCHHHHHHHHHHHHHhcCCC
Q 013228 386 LVE-EAEGLEKIENLRSH--------DNDEIHEKSVKILETYWCGR 422 (447)
Q Consensus 386 ~i~-~~~~~~~l~~l~~~--------~~~~v~~~a~~~l~~~~~~~ 422 (447)
.+. ....++.+.+.... .+..|+..|.+++.-.|.++
T Consensus 76 ~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 76 ELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 444 34556666666552 35789999999999988765
No 252
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.91 E-value=1.1 Score=36.14 Aligned_cols=112 Identities=18% Similarity=0.165 Sum_probs=76.0
Q ss_pred CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHh--cCChHHHHHhhccCCchhHHHHHHHHHHHHhc---CC
Q 013228 208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN--CGALPYLLGLLIHNHKKSIKTDACWTISNITA---GN 282 (447)
Q Consensus 208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~---~~ 282 (447)
.....+..+|+++++.-|..++..+..++..++. +.+.+ ...+..++.+++.++...+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567788999999999999999999988876532 22222 24678899999887678889999999988875 34
Q ss_pred HHHHHHHHHc---CChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 283 SEHIQAVIDA---GLIGPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 283 ~~~~~~l~~~---~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
++..+++... ++++.++.+++. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 4444444432 234444444443 45666777777766553
No 253
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.86 E-value=4.8 Score=40.74 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHh--------CcHHHHHHhcC----CCCchhHhHHHHHHHHhhcCChhhHHHHH
Q 013228 180 KEVMTDACRALFYLSEGTNDEIQAVIEA--------GVCPRLVELLG----HPSPSVLTRALQTVVNIAAGDDFQTQCII 247 (447)
Q Consensus 180 ~~v~~~al~~l~~l~~~~~~~~~~~~~~--------~~~~~L~~lL~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 247 (447)
.+....|+..|+-+..-++.+.+ +... .++..++..-. --+++++..|+.+|-|+++..+......+
T Consensus 623 ~d~~~~Al~vL~i~t~iP~iq~~-La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i 701 (1516)
T KOG1832|consen 623 HDLLQYALGVLHIVTSIPDIQKA-LAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTI 701 (1516)
T ss_pred hHHHHHHHhheeeeEecchHHHH-HHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhh
Confidence 34556666666666555544432 2211 12333332221 13688999999999999988765433222
Q ss_pred hcCChHHHHHhhccCCchhHHHH--H-HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCc-----hhHHHHHHHHHHH
Q 013228 248 NCGALPYLLGLLIHNHKKSIKTD--A-CWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE-----FDIKNWAARAISN 319 (447)
Q Consensus 248 ~~~~l~~l~~~l~~~~~~~v~~~--a-~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~-----~~v~~~a~~aL~~ 319 (447)
.....+..++..... . ...|.+. -...+..+...++|..|+++++... ..+|..|+.+|.-
T Consensus 702 --------~~v~S~~g~~r~~l~~~~ks~~le~~---l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~G 770 (1516)
T KOG1832|consen 702 --------VAVGSQSGDRRIFLGAGTKSAKLEQV---LRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLG 770 (1516)
T ss_pred --------hhccccCCCccccccCCCchHHHHHH---HHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhc
Confidence 111111101111100 0 0011111 0122233345678999999998543 4689999999999
Q ss_pred hcCCCCHHHHHHHHH
Q 013228 320 ATFGGTHEQIKYLVR 334 (447)
Q Consensus 320 l~~~~~~~~~~~l~~ 334 (447)
++... ..++.+..
T Consensus 771 LaR~~--tVrQIltK 783 (1516)
T KOG1832|consen 771 LARDD--TVRQILTK 783 (1516)
T ss_pred cccCc--HHHHHHHh
Confidence 99854 44555444
No 254
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.84 E-value=0.76 Score=42.93 Aligned_cols=169 Identities=11% Similarity=0.083 Sum_probs=91.3
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchh
Q 013228 232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNH---KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD 308 (447)
Q Consensus 232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~ 308 (447)
++..|.+.|.... .+...|..+|.... ++.+|...+.+|.-|-..+ .+.-..++..+..++..++..
T Consensus 3 ~aqv~~~yp~~~a-----~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~lff~l~~~~dk~ 72 (616)
T KOG2229|consen 3 VAQVCPCYPEVLA-----NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKN-----LIVAEDLLELFFPLLRCGDKN 72 (616)
T ss_pred hhhcccccHHHHH-----hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHHhcCchh
Confidence 3445555554433 35556777776442 6788888888877764322 122223566777788888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHH
Q 013228 309 IKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVE 388 (447)
Q Consensus 309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 388 (447)
.|..+..-+.....+.+.....-=.+..+-..+..+|+.+++.--..++..+..|-+..-..
T Consensus 73 lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~------------------ 134 (616)
T KOG2229|consen 73 LRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN------------------ 134 (616)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc------------------
Confidence 87766554443333222111111112223456788899888865556666666665433222
Q ss_pred HhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 013228 389 EAEGLEKIENLRSHDNDEIHEKSVKILETYWCGRVAGPQPGNE 431 (447)
Q Consensus 389 ~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 431 (447)
....+..+..-.-|.++.|.-.+ |.-|+..++++++.+.+
T Consensus 135 d~~tV~i~~~acf~~~~ki~vs~---l~FfL~~D~~dee~dsd 174 (616)
T KOG2229|consen 135 DSKTVNIITTACFSKVPKILVSG---LRFFLGADNEDEEDDSD 174 (616)
T ss_pred cchhHHHHHHHHhccCcHHHHhh---hHHhccCCccccccccc
Confidence 22223333333556778776444 44555655544444443
No 255
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.81 E-value=20 Score=40.46 Aligned_cols=263 Identities=11% Similarity=0.077 Sum_probs=141.1
Q ss_pred CCCHHHHHHHHHHHHHHHccC--CCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228 7 SDDNNMQLEATTHIRKLLSNA--RSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV 84 (447)
Q Consensus 7 s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 84 (447)
+.+..+.+.|+..|+.++..- ..+....=.+...+.++..++.+..+.++++..++++.++..... .-++. +-
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkS-GW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKS-GW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhc-Cc
Confidence 446779999999999887642 011112223345778888888766558999999999999876322 22233 45
Q ss_pred HHHHHhhC----CCCHHHHHHHHHHHHHhhcCChhHHHHHHh--cC----CHHHHHHHhccccchhHHHHHHHHHHHh--
Q 013228 85 PIFVKLLA----SPSDDIREQAVCALGNVAADSARCRDLVLS--EE----ALIPLLTQLNKHAKLSMLRIATWTLSNF-- 152 (447)
Q Consensus 85 ~~L~~ll~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~~----~l~~l~~~l~~~~~~~~~~~a~~~L~~l-- 152 (447)
+.++.++. +.++.+.+.+..++..++.+.- ..+.. .+ .+..+.....+..+.++--.|+..|+.+
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence 66666554 4678888888888887764311 11110 12 2334444443333344444444444433
Q ss_pred --cCCC-----C------------------C------CChhhHhhhHH---HHHHhhccCChhHHHHHHHHHHHhccCC-
Q 013228 153 --CAGK-----P------------------K------PIFDQVRPALP---ALAQLVHSNDKEVMTDACRALFYLSEGT- 197 (447)
Q Consensus 153 --~~~~-----~------------------~------~~~~~~~~~l~---~l~~ll~~~~~~v~~~al~~l~~l~~~~- 197 (447)
+... . . ........-+| .+..+..+..++||..|+..|..+....
T Consensus 1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 1110 0 0 00001122334 3444456788999999999988777332
Q ss_pred ----cHHHHHHHHhCcHHHHHHhcCCC------------------C-ch----hHhHHHHHHHHhhc---CChhhHHHHH
Q 013228 198 ----NDEIQAVIEAGVCPRLVELLGHP------------------S-PS----VLTRALQTVVNIAA---GDDFQTQCII 247 (447)
Q Consensus 198 ----~~~~~~~~~~~~~~~L~~lL~~~------------------~-~~----v~~~a~~~l~~l~~---~~~~~~~~~~ 247 (447)
++....+.. +++-.+...++.. + .+ ....+..+|..++. ..-.....++
T Consensus 1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076 1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333 3333333333210 0 00 12333333433332 2212222222
Q ss_pred hcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 248 NCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 248 ~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
.+++..|..++..+ +..+.+.+..+|.++..
T Consensus 1459 -~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 -KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred -HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 25666666667777 88888888888888875
No 256
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.63 E-value=5.1 Score=33.11 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=88.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
+...+++..++..|+..+..+.... --+. ..++|.|+.+..+++ +.++..|...+..+....+.....-...|
T Consensus 15 ~~~~~~~~~vr~~Al~~l~~il~qG-LvnP-----~~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~~~~~g 87 (187)
T PF12830_consen 15 ELCLSSDDSVRLAALQVLELILRQG-LVNP-----KQCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVESRYSEG 87 (187)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhcC-CCCh-----HHHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4556788899999999998887653 2111 127999999999988 99999999999999886665544433333
Q ss_pred ChHHHHHhhC---CC-CHHH---HHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-------chhHHHHHHHH
Q 013228 83 AVPIFVKLLA---SP-SDDI---REQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-------KLSMLRIATWT 148 (447)
Q Consensus 83 ~i~~L~~ll~---~~-~~~i---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-------~~~~~~~a~~~ 148 (447)
+..-..+-. .+ .... ....+..+..+...+...|..+ +..++..+.... ...-.....++
T Consensus 88 -i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~~Fl 161 (187)
T PF12830_consen 88 -IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFLLFL 161 (187)
T ss_pred -HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHHHHHH
Confidence 332222221 11 1111 4555666666766555555554 556666663322 33445556667
Q ss_pred HHHhcCCC
Q 013228 149 LSNFCAGK 156 (447)
Q Consensus 149 L~~l~~~~ 156 (447)
..||+.-+
T Consensus 162 a~nLA~l~ 169 (187)
T PF12830_consen 162 AENLATLP 169 (187)
T ss_pred HHHHhcCC
Confidence 77776554
No 257
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.60 E-value=1.8 Score=34.68 Aligned_cols=148 Identities=10% Similarity=0.098 Sum_probs=83.8
Q ss_pred HhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh
Q 013228 164 VRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ 242 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 242 (447)
...+++.|..+++.+ +..++..++++++.+..-++.+.+.+.... +. ..-...+......... ........+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~--~~~~~~~~~~~~~~l~-~~~~~~~~e-- 80 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DS--KSSENSNDESTDISLP-MMGISPSSE-- 80 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cc--cccccccccchhhHHh-hccCCCchH--
Confidence 467788899998865 689999999999999977776544221110 10 0001111111111111 111111122
Q ss_pred HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228 243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321 (447)
Q Consensus 243 ~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~ 321 (447)
...-..++..|+.+|+++.-..-...++.++.++.......+-.++.. ++|.+++.+...+...++...+-|+.+.
T Consensus 81 --e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 --EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred --HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 233334667888888877444445566777777764211112223333 8999999998766677777776666654
No 258
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.57 E-value=0.81 Score=32.58 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH
Q 013228 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE 284 (447)
Q Consensus 210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~ 284 (447)
+...+..+.++.+.+|..++..|..+..... ....-..+++..+...++++ ++.+--.|..+++.++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence 4566777888999999999999999997665 11122236778888999999 999999999999999885544
No 259
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.43 E-value=1.1 Score=35.09 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=60.4
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH-DNDEIHEKSVKIL 415 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~-~~~~v~~~a~~~l 415 (447)
++..|..-+.+.++.++..|+..|..++++++.. |...+....+++.|..+... .++.|+.++..++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4666777778889999999999999999988764 56667778888889988776 7899999999999
Q ss_pred HHhcC
Q 013228 416 ETYWC 420 (447)
Q Consensus 416 ~~~~~ 420 (447)
..+..
T Consensus 106 ~~W~~ 110 (144)
T cd03568 106 KQWAD 110 (144)
T ss_pred HHHHH
Confidence 99754
No 260
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.93 E-value=8.1 Score=33.86 Aligned_cols=224 Identities=15% Similarity=0.067 Sum_probs=131.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc-ccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228 86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK-HAKLSMLRIATWTLSNFCAGKPKPIFDQV 164 (447)
Q Consensus 86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (447)
.|-..|.++++.+|..++..|+.+...-+.. . ....-+..+++.+.. -.|......++.++..|.... .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence 4556778899999999999999887554421 1 222234555554422 134555555677777777443 2222233
Q ss_pred hhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChh
Q 013228 165 RPALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 165 ~~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
..++..+.+-.. +-....|..+...+..+..+....... ...+++..+++.+.. .+|+-...+...+..+...-+-
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 444444444322 334667888888888887654332221 223567777777754 6677777777777666543331
Q ss_pred hHHHHHhcCChHHHHHhhc--------cCC-c--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228 242 QTQCIINCGALPYLLGLLI--------HNH-K--KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK 310 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~--------~~~-~--~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~ 310 (447)
....+-+.+.+. .+. + .-.+......|.++...++... .-.+|.|++-|.++.+.++
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHH
Confidence 123333333331 111 1 2234455556666555544322 2378899999999999999
Q ss_pred HHHHHHHHHhcCCCCH
Q 013228 311 NWAARAISNATFGGTH 326 (447)
Q Consensus 311 ~~a~~aL~~l~~~~~~ 326 (447)
..++.+|..++..-..
T Consensus 226 ~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 226 LDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHHHHHCCH
Confidence 9999999887764433
No 261
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.78 E-value=1.9 Score=42.44 Aligned_cols=134 Identities=19% Similarity=0.125 Sum_probs=91.5
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
..+++.|..-+++.+..+++.++..+...+..-+ ...+...+++.+-.+.....+..++.+++.|+..+... ..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---lD 461 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---LD 461 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---HH
Confidence 4566777777777888999999999888874433 22334455777777766777889999999999988822 22
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS 221 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~ 221 (447)
....-+.+..+.+..+..++.+....+.+..++....... ..+....++|.++.+...+.
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2223344455666667788999888888887777443332 23455577888887776544
No 262
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.71 E-value=1.6 Score=34.18 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=59.7
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDEIHEKSVKIL 415 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~v~~~a~~~l 415 (447)
++..|..-+.++++.++..|+..|..+++++... |...+...++++.|..+.. ..++.|++++..++
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH------------FHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 5667777788899999999999999999986553 5666777888888888865 67889999999999
Q ss_pred HHhcCC
Q 013228 416 ETYWCG 421 (447)
Q Consensus 416 ~~~~~~ 421 (447)
..+...
T Consensus 110 ~~W~~~ 115 (142)
T cd03569 110 QAWALA 115 (142)
T ss_pred HHHHHH
Confidence 987653
No 263
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=91.28 E-value=1.9 Score=33.43 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=58.3
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC------CCHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH------DNDEIHEK 410 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~------~~~~v~~~ 410 (447)
++..|..-+.++++.++..|+..|..+++++... |...+...+++..+.++... .++.|+.+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k 106 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER------------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK 106 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 4666777788999999999999999999987664 56667777788888887743 57899999
Q ss_pred HHHHHHHhcC
Q 013228 411 SVKILETYWC 420 (447)
Q Consensus 411 a~~~l~~~~~ 420 (447)
...++..+-.
T Consensus 107 il~li~~W~~ 116 (139)
T cd03567 107 IIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 264
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.19 E-value=13 Score=34.92 Aligned_cols=186 Identities=11% Similarity=0.071 Sum_probs=110.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHccCC--CCchhhhhccCCHHHHHHhhcCCC----CH-H-HHHHHHHHHHHHcCCChhhH-
Q 013228 5 VWSDDNNMQLEATTHIRKLLSNAR--SAPTEEVIPFGVVPRFVEFLMRED----YP-Q-LQFEAAWALKNIVSGTSEDT- 75 (447)
Q Consensus 5 l~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~~v~~L~~ll~~~~----~~-~-v~~~a~~~L~~l~~~~~~~~- 75 (447)
+...+.+.++.|+....+++.+.. ....+.+.+.-+.+.+-+++.+.+ .| . .+..++.+|...|. .++..
T Consensus 20 ~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~pElAs 98 (698)
T KOG2611|consen 20 LKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-VPELAS 98 (698)
T ss_pred hcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-Chhhcc
Confidence 445566788889988889887642 233566888888888888886543 12 2 34556677777777 45543
Q ss_pred -HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHH
Q 013228 76 -KVVIDHGAVPIFVKLLAS-PSD------DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATW 147 (447)
Q Consensus 76 -~~~~~~~~i~~L~~ll~~-~~~------~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~ 147 (447)
..++ +-||.|..++.. .++ .+.+.+-.+|..++...+ ....++..|+++.+.+.-.-+.-..-..-++.
T Consensus 99 h~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 99 HEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred CHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 2333 458889988865 233 367788888988888765 45566788999999976632222222222333
Q ss_pred HHHHhcCCC--CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228 148 TLSNFCAGK--PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLS 194 (447)
Q Consensus 148 ~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~ 194 (447)
++.-....- -.........++..+..-+...+.......+..|..+.
T Consensus 176 Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333222221 01111112233444444444556666777777777444
No 265
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.02 E-value=10 Score=33.21 Aligned_cols=212 Identities=19% Similarity=0.114 Sum_probs=120.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCC---Cchhhhh-----------ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARS---APTEEVI-----------PFGVVPRFVEFLMREDYPQLQFEAAWALKNI 67 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~-----------~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l 67 (447)
+.+|.+..+..-..|+..+.++...-.- ...+.+. -.|+.+.+++-+.++.. .+.++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t---~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSST---YELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCc---HHHHHHHHHHH
Confidence 4578899999999999999999876321 1111111 12334444444544442 45555666666
Q ss_pred cCC-------ChhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccc
Q 013228 68 VSG-------TSEDTKVVIDHGAVPIFVKLLASPS----DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKH 136 (447)
Q Consensus 68 ~~~-------~~~~~~~~~~~~~i~~L~~ll~~~~----~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 136 (447)
+.. ..+.|-.+.-.+.+|.++..+++++ ......++..|+.+|.... ...+..++....++
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 542 1222333333345677777776655 2444566788888873321 12344444444332
Q ss_pred c---chhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 013228 137 A---KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRL 213 (447)
Q Consensus 137 ~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L 213 (447)
. ..+....++..+..-.. |. .....+-.++.+|.++-+-++..++..|..+....+.+.. ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 2 22334444433332221 11 2245566788999999999999999999988866554322 445678888
Q ss_pred HHhcCCCCchhHhHHHHHHHHh
Q 013228 214 VELLGHPSPSVLTRALQTVVNI 235 (447)
Q Consensus 214 ~~lL~~~~~~v~~~a~~~l~~l 235 (447)
.+++..+-. ..|+.++-.+
T Consensus 234 lrlL~t~~~---~eAL~VLd~~ 252 (262)
T PF14225_consen 234 LRLLQTDLW---MEALEVLDEI 252 (262)
T ss_pred HHHhCCccH---HHHHHHHHHH
Confidence 888876544 3444444443
No 266
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.95 E-value=2.1 Score=33.06 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=57.8
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC---CCHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH---DNDEIHEKSVK 413 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~---~~~~v~~~a~~ 413 (447)
++..|..-+.++++.++..|+..|..++++++.. |...+....++..+..+... .++.|+.++..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~------------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ 105 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP------------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALE 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH------------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 4667777788899999999999999999987663 56666666777778888654 58899999999
Q ss_pred HHHHhcC
Q 013228 414 ILETYWC 420 (447)
Q Consensus 414 ~l~~~~~ 420 (447)
++..+..
T Consensus 106 ll~~W~~ 112 (133)
T cd03561 106 LILAWSE 112 (133)
T ss_pred HHHHHHH
Confidence 9998754
No 267
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.79 E-value=2.2 Score=33.15 Aligned_cols=72 Identities=10% Similarity=-0.032 Sum_probs=59.4
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~ 365 (447)
.+..+..-+.++++.++..|+..|-.+..++.......+...+++..|+.++.. .++.++..++..+..-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 466677778899999999999999999998888888888888899999999853 456888888877776654
No 268
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.75 E-value=4.3 Score=35.82 Aligned_cols=144 Identities=16% Similarity=0.159 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCChhHHHHHHhc-C-CH
Q 013228 55 QLQFEAAWALKNIVSGTSEDTKVVIDHG--AVPIFVKLLAS----PSDDIREQAVCALGNVAADSARCRDLVLSE-E-AL 126 (447)
Q Consensus 55 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-~-~l 126 (447)
+-+.-++..++-++. ++.....+...+ +...+..++.. ..+..+-.++++++|+...... +..+... + .+
T Consensus 78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchH
Confidence 446666677766666 455555554443 23444444432 5788889999999999877664 4444432 2 33
Q ss_pred HHHHHHhcccc---chhHHHHHHHHHHHhcCCC-CCC-ChhhHhhhHHHHHHhh-c-cCChhHHHHHHHHHHHhccCCcH
Q 013228 127 IPLLTQLNKHA---KLSMLRIATWTLSNFCAGK-PKP-IFDQVRPALPALAQLV-H-SNDKEVMTDACRALFYLSEGTND 199 (447)
Q Consensus 127 ~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~l~~ll-~-~~~~~v~~~al~~l~~l~~~~~~ 199 (447)
...+..+.... +..++..++..+.|++... ... .......++..+...+ . ..+++....++-+++++...++.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 33444332332 6788888889999987544 111 1222244666677743 3 36899999999999999965544
Q ss_pred H
Q 013228 200 E 200 (447)
Q Consensus 200 ~ 200 (447)
.
T Consensus 236 ~ 236 (268)
T PF08324_consen 236 A 236 (268)
T ss_dssp H
T ss_pred H
Confidence 3
No 269
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.71 E-value=10 Score=32.68 Aligned_cols=140 Identities=22% Similarity=0.120 Sum_probs=89.2
Q ss_pred HHHHHH-hhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHH
Q 013228 168 LPALAQ-LVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI 246 (447)
Q Consensus 168 l~~l~~-ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 246 (447)
+|.++. +-+..+++.+...+.+|..++.+.. ... .-+++.+..+...+....+.-+.+.+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VCV----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cch----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 344444 5567789999999999999997762 111 1245667777777777766777888888776665332
Q ss_pred HhcCChHHHHHh-----h---c-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCchhHHHHHHHH
Q 013228 247 INCGALPYLLGL-----L---I-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL-QNAEFDIKNWAARA 316 (447)
Q Consensus 247 ~~~~~l~~l~~~-----l---~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l-~~~~~~v~~~a~~a 316 (447)
+.+..++.. . . .....+.....+.++..+|...|+.. ..+++.+..++ +..++..+..+..+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 122222222 1 1 11133344444567778877666522 22577788888 67788899999999
Q ss_pred HHHhcCC
Q 013228 317 ISNATFG 323 (447)
Q Consensus 317 L~~l~~~ 323 (447)
+..++..
T Consensus 146 l~~Lc~~ 152 (234)
T PF12530_consen 146 LAPLCEA 152 (234)
T ss_pred HHHHHHH
Confidence 9999853
No 270
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.60 E-value=29 Score=37.72 Aligned_cols=72 Identities=8% Similarity=0.191 Sum_probs=54.1
Q ss_pred CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 250 GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 250 ~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
+++|.|..-|.+. +..+|..|...++.+......... =-........+.-+...+.++|..++....++..+
T Consensus 259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 7889999999888 999999999999999775333221 00123455566666678899999999999888776
No 271
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.36 E-value=2.4 Score=33.23 Aligned_cols=72 Identities=7% Similarity=0.066 Sum_probs=61.6
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~ 365 (447)
.+..|..-+.+.++.++..|+..|-.+..++.......+.+..+++.|..++.. .++.++..++..+.....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 466677778889999999999999999999888888888888999999999988 677888888888777654
No 272
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=90.28 E-value=2.2 Score=48.61 Aligned_cols=269 Identities=14% Similarity=0.135 Sum_probs=146.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHccCCC--Cchhhhh--ccCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 013228 5 VWSDDNNMQLEATTHIRKLLSNARS--APTEEVI--PFGVVPRFVEFL-MREDYPQLQFEAAWALKNIVSGTSEDTKVVI 79 (447)
Q Consensus 5 l~s~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~--~~~~v~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (447)
+..++++.+..++..+..+...... +....-. ....+..+..+- ..++ +.++......+. ..+.....
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~la 562 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLA 562 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhc
Confidence 4567788888887777766654211 0000001 112233333332 2344 666655544443 23334455
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 80 DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 80 ~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
+.+.+..+...+.+....++..+...+++++..+|...-.......+..+-.+- .+.-..+...+..-+..+....+..
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHH
Confidence 556667777778888889999999999999987764322211111111111111 1111111111211111111111122
Q ss_pred ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcC
Q 013228 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~ 238 (447)
........+..++..+.+++..+...++.++..|+...........+ ..++.+.+.+.+ .+..-+..+.++++++...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 22233455566777778888888999999999999665543333444 455666665544 4566678889999999865
Q ss_pred ChhhHHHHHh-cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCC
Q 013228 239 DDFQTQCIIN-CGALPYLLGLLIHNHKKSIKTDACWTISNITAGN 282 (447)
Q Consensus 239 ~~~~~~~~~~-~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~ 282 (447)
.......... ..++..+...+.......++.++...++++....
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 4322221111 2345666666766656778888888888766543
No 273
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.15 E-value=15 Score=37.30 Aligned_cols=246 Identities=13% Similarity=0.074 Sum_probs=137.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH-HhCC
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVV-IDHG 82 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~ 82 (447)
++.++....+-++...+.++-... +.. .++.. .+=.|......++ ..+|...+++...--. ..+.+ ....
T Consensus 32 Glr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln~v~n~aE 102 (970)
T KOG1988|consen 32 GLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLNKVLNGAE 102 (970)
T ss_pred cccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhccc----cchhhhhhhh
Confidence 344444555555555555555432 111 22222 2334555666777 6788877777764322 11112 1223
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD 162 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (447)
.+..+.....+.|+.-|..++..++.++.--| +.+..+.++..-..+.++--.+.++.+....+... ..
T Consensus 103 ~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s----k~ 171 (970)
T KOG1988|consen 103 FLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS----KD 171 (970)
T ss_pred hhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh----hh
Confidence 44444555567899999999999999864333 44556666665544444444556666666666443 12
Q ss_pred hHhhhHHHHHHhhccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCC
Q 013228 163 QVRPALPALAQLVHSND--KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGD 239 (447)
Q Consensus 163 ~~~~~l~~l~~ll~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~ 239 (447)
...++...+-.++...+ +......+.++..+..... ....+....+.++.. +..+....-+.++++++...
T Consensus 172 FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT~Lasrs 245 (970)
T KOG1988|consen 172 FACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLASRS 245 (970)
T ss_pred hHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhHHHHHHH
Confidence 22334444555555443 4445567777777774322 222345566666643 44454555667777776432
Q ss_pred hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
-.. -.+-.+.+.+.++.+...-++..+.|.+.+++.
T Consensus 246 ~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 246 LVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 211 124566788888755466677777787777653
No 274
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=15 Score=39.34 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc------ccchhHHHHHHHHHHHhcCCC-CCCChhhHh
Q 013228 93 SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK------HAKLSMLRIATWTLSNFCAGK-PKPIFDQVR 165 (447)
Q Consensus 93 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~ 165 (447)
.+..+++...+.++.++....- +.+.. + -+.+.+++.. .....+.+.+..++.-++.+. +........
T Consensus 853 ~~~~evr~~sl~~l~silet~g---e~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVG---EHLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccc---hhhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 3566777777788888764432 12222 2 4555555531 113567788888888888877 666666678
Q ss_pred hhHHHHHHhhc-cCChhHHHHHHHHHHHhcc
Q 013228 166 PALPALAQLVH-SNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 166 ~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~ 195 (447)
+++..+..+-+ ..|..+--.|+..+++++.
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 88888887765 4577777777777777763
No 275
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.65 E-value=7.5 Score=39.22 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=90.3
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCChhH---------HHHHHhcCCHHHHHHHhc---cccchhHHHHHH
Q 013228 83 AVPIFVKLLAS----PSDDIREQAVCALGNVAADSARC---------RDLVLSEEALIPLLTQLN---KHAKLSMLRIAT 146 (447)
Q Consensus 83 ~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~~~~~~---------~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~ 146 (447)
.+..+..++.. .++.++..|+.+++.+....... .........++.+...+. ...+..-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34555556654 45778888888888776311100 011112234666666664 234556777788
Q ss_pred HHHHHhcCCCCCCChhhHhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CC
Q 013228 147 WTLSNFCAGKPKPIFDQVRPALPALAQLVHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PS 221 (447)
Q Consensus 147 ~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~ 221 (447)
.+|.|+-. ...++.+...+... ...+|..|++++..+....+... .+.++++..+ .+
T Consensus 512 kaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~ 573 (618)
T PF01347_consen 512 KALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTED 573 (618)
T ss_dssp HHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-
T ss_pred HHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCC
Confidence 88988853 34677777777665 67889999999998876555433 3566666644 45
Q ss_pred chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHH
Q 013228 222 PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDAC 272 (447)
Q Consensus 222 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~ 272 (447)
.++|..|+..|-. .+|.. ..+..+...+....+..|.....
T Consensus 574 ~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 574 PEVRIAAYLILMR---CNPSP-------SVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp HHHHHHHHHHHHH---T---H-------HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred hhHHHHHHHHHHh---cCCCH-------HHHHHHHHHHhhCchHHHHHHHH
Confidence 6788877765543 22222 13345666666554566655443
No 276
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=89.45 E-value=18 Score=33.70 Aligned_cols=186 Identities=11% Similarity=0.067 Sum_probs=93.7
Q ss_pred cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc--CCh-hhHH---HHHhc-
Q 013228 177 SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA--GDD-FQTQ---CIINC- 249 (447)
Q Consensus 177 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~--~~~-~~~~---~~~~~- 249 (447)
-+...+....+.++.++....+.....- -...++.++..+-+....++..|..++..+.. +.+ ...+ ...+.
T Consensus 145 ~~s~si~~erL~i~~~ll~q~p~~M~~~-~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~ 223 (372)
T PF12231_consen 145 FPSKSIISERLNIYKRLLSQFPQQMIKH-ADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRS 223 (372)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccc
Confidence 3456777888888888886655432211 11367777777777777777776555544432 111 1111 11221
Q ss_pred ---C-----ChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 250 ---G-----ALPYLLGLLIHNHKKSIKTDACWTISNITAGNS-EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 250 ---~-----~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
+ +.+.+..++.+.++.......-.++.-+..... +.. ..+ ...+...-...+++++.+|..|..+...+
T Consensus 224 ~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w-~~~-n~wL~v~e~cFn~~d~~~k~~A~~aW~~l 301 (372)
T PF12231_consen 224 LENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSW-EHL-NEWLKVPEKCFNSSDPQVKIQAFKAWRRL 301 (372)
T ss_pred cccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhcc-HhH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2 233366666663132222222222223322211 111 111 11444444456688999999999988877
Q ss_pred cCCCC--HHHHHHHHHcCChHHHHhhccCC-CH----HHHHHHHHHHHHHHHh
Q 013228 321 TFGGT--HEQIKYLVREGCIKPLCDLLLCA-DP----EIVTVFLKGLEKILKV 366 (447)
Q Consensus 321 ~~~~~--~~~~~~l~~~~~l~~L~~ll~~~-~~----~~~~~a~~~l~~l~~~ 366 (447)
..... .......... ...++...++.. .. ++...++..+.+++-.
T Consensus 302 iy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 302 IYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 65221 1111111111 234444444432 22 6778888888888743
No 277
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.12 E-value=19 Score=33.47 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---cCchhHHHHHHHHHHHhcCCCCHH-----------HH
Q 013228 264 KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ---NAEFDIKNWAARAISNATFGGTHE-----------QI 329 (447)
Q Consensus 264 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~---~~~~~v~~~a~~aL~~l~~~~~~~-----------~~ 329 (447)
...-|..|+..+..++...++....++.. .+..++.-.. +.++.-+..|+..++.++..+... ..
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 34556778888888876433333222221 2333322211 346778889999999998865210 23
Q ss_pred HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHH
Q 013228 330 KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHE 409 (447)
Q Consensus 330 ~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~ 409 (447)
..+....+++.|. --.+..|-++..|++.+..+-..-+ ...+ .+.++.+.+.+.+++.-|+.
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---------------~~~l--~~~~~~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---------------KEQL--LQIFPLLVNHLQSSSYVVHT 364 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----------------HHHH--HHHHHHHHHHTTSS-HHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---------------HHHH--HHHHHHHHHHhCCCCcchhh
Confidence 4445555666555 2223456677778777776644321 1222 34678888999999999999
Q ss_pred HHHHHH
Q 013228 410 KSVKIL 415 (447)
Q Consensus 410 ~a~~~l 415 (447)
+|+..+
T Consensus 365 yAA~~i 370 (370)
T PF08506_consen 365 YAAIAI 370 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhC
Confidence 888654
No 278
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=89.09 E-value=4.6 Score=29.08 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=54.4
Q ss_pred cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHH
Q 013228 335 EGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKI 414 (447)
Q Consensus 335 ~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~ 414 (447)
...+..|++-...++......++..+..+++.... ...+...|+.+.|.++...-+++.+.....+
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34566677777777777788899999998875443 6778889999999999988889988888877
Q ss_pred HHH
Q 013228 415 LET 417 (447)
Q Consensus 415 l~~ 417 (447)
++.
T Consensus 95 l~~ 97 (98)
T PF14726_consen 95 LDQ 97 (98)
T ss_pred Hhc
Confidence 764
No 279
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=88.96 E-value=4.5 Score=29.14 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhh-ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVI-PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK 89 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 89 (447)
++|..|+..+..-..+. --....+. ....+..|+...+.+. ...+..++..+..++. ++.....+.+.|+...|-+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 56777777666544432 22223333 4567888888888888 6789999999999998 7788888889999988776
Q ss_pred hhCCCCHHHHHHHHHH
Q 013228 90 LLASPSDDIREQAVCA 105 (447)
Q Consensus 90 ll~~~~~~i~~~a~~~ 105 (447)
+=...++..+..+-..
T Consensus 79 lr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHhcCCHHHHHHHHHH
Confidence 6655566666544433
No 280
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=88.73 E-value=4.5 Score=37.17 Aligned_cols=218 Identities=18% Similarity=0.114 Sum_probs=111.1
Q ss_pred hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh
Q 013228 36 IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSAR 115 (447)
Q Consensus 36 ~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~ 115 (447)
+...++..+..++..+.++.....++.++..-...- ..-+...+++.+.+-+.+..+.+|+.-+..++........
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334477788888877665777777777777655311 0111224556677777777777999888888887641110
Q ss_pred HHHHHHhcCCHHHHHHHhcc---ccchhHH---HHHHHHHHHhcCCC-CCCCh-hhHh-----hhHHH-HH--Hhhcc-C
Q 013228 116 CRDLVLSEEALIPLLTQLNK---HAKLSML---RIATWTLSNFCAGK-PKPIF-DQVR-----PALPA-LA--QLVHS-N 178 (447)
Q Consensus 116 ~~~~~~~~~~l~~l~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-~~~~~-~~~~-----~~l~~-l~--~ll~~-~ 178 (447)
....-.-..+++.+++.+.. ++-.... ..++.++..+.... ..... .... +-=|. +. ++... .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 00111122356667766632 1111111 11222222211111 00000 0000 00000 00 22223 4
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHH
Q 013228 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP--SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLL 256 (447)
Q Consensus 179 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~ 256 (447)
+++.....++++..+..........-.....-..++.++-+. .+.+|+.|+..+..+...++.. +...++..+-
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 555566667777666644332211111234567788888777 8999999999999998877753 2223444555
Q ss_pred Hhhcc
Q 013228 257 GLLIH 261 (447)
Q Consensus 257 ~~l~~ 261 (447)
..+..
T Consensus 251 ~~l~~ 255 (339)
T PF12074_consen 251 KWLSS 255 (339)
T ss_pred HHHHh
Confidence 55543
No 281
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=88.59 E-value=18 Score=34.43 Aligned_cols=275 Identities=11% Similarity=0.136 Sum_probs=123.0
Q ss_pred CCHHHHHHhhcC---CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhc---
Q 013228 39 GVVPRFVEFLMR---EDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP-SDDIREQAVCALGNVAA--- 111 (447)
Q Consensus 39 ~~v~~L~~ll~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~--- 111 (447)
.++..|..++.. ..++-+-....+++.-+-..-......+++. .+..+....+++ +|..-.....+++.+.+
T Consensus 26 ~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~ 104 (435)
T PF03378_consen 26 QLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVC 104 (435)
T ss_dssp HHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence 345566666654 2335566666666655544333333333332 334444444553 56666666666665543
Q ss_pred -CChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC-CCChhhHhhhHHHHHHh-hccCChhHHHHHHH
Q 013228 112 -DSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP-KPIFDQVRPALPALAQL-VHSNDKEVMTDACR 188 (447)
Q Consensus 112 -~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~l~~l-l~~~~~~v~~~al~ 188 (447)
.++..- .-.+...+|.+...| ...-.+..-++...++.+....+ .........++|.++.- +-.....+ -...+
T Consensus 105 ~~~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-Palvr 181 (435)
T PF03378_consen 105 EADPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVR 181 (435)
T ss_dssp GGGHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHH
T ss_pred CCChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHH
Confidence 222211 122344567777777 44445677777777777776553 22222334444444422 22111111 22333
Q ss_pred HHHHhccCCcHHHHHHHHh----CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh-HHHHHhcCChHHHHHhhccCC
Q 013228 189 ALFYLSEGTNDEIQAVIEA----GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ-TQCIINCGALPYLLGLLIHNH 263 (447)
Q Consensus 189 ~l~~l~~~~~~~~~~~~~~----~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~l~~~l~~~~ 263 (447)
.|.......+.. +... +++..+-+++.++..+ ..+...|..+...-+.. .+..+. .++..+..-|.+..
T Consensus 182 LL~a~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~sk 255 (435)
T PF03378_consen 182 LLQAYIKKDPSF---IVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSK 255 (435)
T ss_dssp HHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC-
T ss_pred HHHHHHHhCchh---hcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCC
Confidence 333333222221 1111 2334444556554332 44666777666544421 111111 24444555555443
Q ss_pred chhHHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHHH-----hc-CchhHHHHHHHHHHHhcCC
Q 013228 264 KKSIKTDACWTISNITA-GNSEHIQAVID---AGLIGPLVNLL-----QN-AEFDIKNWAARAISNATFG 323 (447)
Q Consensus 264 ~~~v~~~a~~~l~nl~~-~~~~~~~~l~~---~~~~~~L~~~l-----~~-~~~~v~~~a~~aL~~l~~~ 323 (447)
..+..+..+..++.++. .+++..-..++ .|+...++.-+ .. ..+.-|+.++-++.++...
T Consensus 256 T~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 256 TEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp -HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 55666655555565544 34554444443 45555444421 11 2334466677777776643
No 282
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.55 E-value=2.9 Score=33.68 Aligned_cols=111 Identities=25% Similarity=0.214 Sum_probs=72.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc--CCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---C
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSE--EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---P 157 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~ 157 (447)
.+..+..+++++++.-|-.++..+...+..++ .+.+.+. ..+..++..|.+..+..+.+.++.++..+.... +
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45668888999889999888888888886642 2333222 247788888877777788888998888887544 3
Q ss_pred CCChhhH----hhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228 158 KPIFDQV----RPALPALAQLVHSNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 158 ~~~~~~~----~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~ 197 (447)
....+.. ..+++.++.+++. ......++.++..+....
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 3222222 3444445555543 456666777777666433
No 283
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.44 E-value=29 Score=34.69 Aligned_cols=137 Identities=15% Similarity=0.105 Sum_probs=80.1
Q ss_pred hhhHHHHHHhhccC----ChhHHHHHHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhc----CCCCchhHhHHHHHHH
Q 013228 165 RPALPALAQLVHSN----DKEVMTDACRALFYLSEG---TNDEIQAVIEAGVCPRLVELL----GHPSPSVLTRALQTVV 233 (447)
Q Consensus 165 ~~~l~~l~~ll~~~----~~~v~~~al~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL----~~~~~~v~~~a~~~l~ 233 (447)
...+..+..++.++ .+.++..++-+++++... ........+...+++.+...| ...+...+...+.+|+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 44566677777643 456777777777766631 111000111123445555544 3455666777899999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHhhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCchhH
Q 013228 234 NIAAGDDFQTQCIINCGALPYLLGLLI--HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ--NAEFDI 309 (447)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~--~~~~~v 309 (447)
|+.... .++.+..++. ...+..+|..|+|+|..++...+.. +-+.++.++. ..++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence 877522 2233444443 2225789999999999987644442 3444556555 357889
Q ss_pred HHHHHHHHHHh
Q 013228 310 KNWAARAISNA 320 (447)
Q Consensus 310 ~~~a~~aL~~l 320 (447)
|..|..+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 98888877554
No 284
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.24 E-value=4.3 Score=31.71 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=60.7
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHh
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~ 366 (447)
.+..|..-+.++++.++..|+..|-.+..++.......+.+.++++.|..++.. .++.++..++..+..-...
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 566677778889999999999999999998877777778888999999998874 5678888888888777654
No 285
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=87.84 E-value=26 Score=33.44 Aligned_cols=263 Identities=11% Similarity=0.057 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC----CCCCChhhHhhhHH
Q 013228 94 PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG----KPKPIFDQVRPALP 169 (447)
Q Consensus 94 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~l~ 169 (447)
+++.+-+...+++..+...-.+....+... .+..+....++.+++..-.+...+++.+.+. .+.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 456666677777766655444343333221 2222222333444555555555555544433 23333345678889
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc---hhHhHHHHHHHHhhcCChhhHHHH
Q 013228 170 ALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP---SVLTRALQTVVNIAAGDDFQTQCI 246 (447)
Q Consensus 170 ~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~---~v~~~a~~~l~~l~~~~~~~~~~~ 246 (447)
.+...|+.+-.+..-++...++.+.+.... ..+ .......+-.++...-| .-.....+.|..+....+.. +
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~-p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~---i 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPL-PDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF---I 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCC-cHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh---h
Confidence 999999988888888888888887754431 111 11112222222222111 22244455666655444432 2
Q ss_pred HhcCC----hHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHh
Q 013228 247 INCGA----LPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNA 320 (447)
Q Consensus 247 ~~~~~----l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l 320 (447)
...+- +..+-+++.+. .. -..+...|..+... ..+..+..+.. ++..++.-|+ +...+..+..+..++.+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 22233 33444556555 22 24466666666553 33333333333 5555555566 44666666666666666
Q ss_pred cCCCCHHHHHHHHH---cCChHHHHhhc-----cC-CCHHHHHHHHHHHHHHHHhh
Q 013228 321 TFGGTHEQIKYLVR---EGCIKPLCDLL-----LC-ADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 321 ~~~~~~~~~~~l~~---~~~l~~L~~ll-----~~-~~~~~~~~a~~~l~~l~~~~ 367 (447)
+...+++.....++ .|....+..-+ .. ..+.-++.+.-++.+++..+
T Consensus 271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 65445554444443 34444433311 11 23333555666666666443
No 286
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.79 E-value=7.9 Score=29.85 Aligned_cols=74 Identities=7% Similarity=-0.060 Sum_probs=60.6
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhh
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC---ADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~~~a~~~l~~l~~~~ 367 (447)
.+..|..-++++++.++..|+..|-.+..++.+.....+....++..|+.++.. .++.++..++..+.......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466677778889999999999999999999888777777777788889998875 46789988888888776543
No 287
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.76 E-value=4.1 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=57.4
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCC--HHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDN--DEIHEKSVKI 414 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~--~~v~~~a~~~ 414 (447)
++..|..-+.++++.++..|+..|..+++++... |...+...++++.|..+...+. +.|++++..+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~------------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l 105 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK------------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 4666777778899999999999999999987653 5677777888899988866543 3399999999
Q ss_pred HHHhcC
Q 013228 415 LETYWC 420 (447)
Q Consensus 415 l~~~~~ 420 (447)
+..+..
T Consensus 106 i~~W~~ 111 (133)
T smart00288 106 IQEWAD 111 (133)
T ss_pred HHHHHH
Confidence 988765
No 288
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=87.33 E-value=19 Score=35.10 Aligned_cols=222 Identities=15% Similarity=0.053 Sum_probs=117.6
Q ss_pred cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC--C---------CCchhHhHHHHHHHHhhcCChhhHHH
Q 013228 177 SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG--H---------PSPSVLTRALQTVVNIAAGDDFQTQC 245 (447)
Q Consensus 177 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~---------~~~~v~~~a~~~l~~l~~~~~~~~~~ 245 (447)
+++.+|...+-..|..+...-++ ..++..|..+.. . -++.+|...+..| ++... ..
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~ed-------~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~~---Aa 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLED-------PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSVI---AA 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCCC-------HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhHH---HH
Confidence 44566666676677666643221 123444444433 1 2234444444443 33111 00
Q ss_pred HHhcCChHHHHHhhccC-CchhHHHHHHHHH---HHHhcC-CHHHHH---HHHHcCChHHHHH----HHhcCchhHHHHH
Q 013228 246 IINCGALPYLLGLLIHN-HKKSIKTDACWTI---SNITAG-NSEHIQ---AVIDAGLIGPLVN----LLQNAEFDIKNWA 313 (447)
Q Consensus 246 ~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l---~nl~~~-~~~~~~---~l~~~~~~~~L~~----~l~~~~~~v~~~a 313 (447)
-.-...+..+...+.+. ...+++..+...+ ...... .+.... ..+..++.|.+-. --...+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 11123333444444333 1346666665555 444442 333332 3344555555410 0123467899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchH
Q 013228 314 ARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGL 393 (447)
Q Consensus 314 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 393 (447)
..+|+.++.....-.. -+.+.+..|.+-|..++++++...-++|..+.......... ........+
T Consensus 395 Ye~lG~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-----------~~~~~~~~~ 460 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-----------EDEQKRLLL 460 (501)
T ss_pred HHHHHHHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-----------hhHHHHHHH
Confidence 9999999987432111 22356888888888888999999999998888654332110 000001111
Q ss_pred H-HHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 013228 394 E-KIENLRSHDNDEIHEKSVKILETYWCGRVAG 425 (447)
Q Consensus 394 ~-~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 425 (447)
. .+.....+....++..|.+-.+++|+.++.+
T Consensus 461 ~~l~~~~~~~~~~~~R~~avk~an~~fpf~d~~ 493 (501)
T PF13001_consen 461 ELLLLSYIQSEVRSCRYAAVKYANACFPFSDVP 493 (501)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhCCccchH
Confidence 1 2222334555668888999999999877654
No 289
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=87.31 E-value=24 Score=32.58 Aligned_cols=103 Identities=14% Similarity=0.033 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCChhHHH-HHHhcCCHH
Q 013228 54 PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-----PSDDIREQAVCALGNVAADSARCRD-LVLSEEALI 127 (447)
Q Consensus 54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~i~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~ 127 (447)
..+..++..||+|+..+++..+....+......+++.+.. ....+...=++.|.-+..-.+..|. .+.+.++++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 4788999999999999999999999999888888876643 1223333334444444433334444 455677888
Q ss_pred HHHHHhcc-----c---------cchhHHHHHHHHHHHhcCCC
Q 013228 128 PLLTQLNK-----H---------AKLSMLRIATWTLSNFCAGK 156 (447)
Q Consensus 128 ~l~~~l~~-----~---------~~~~~~~~a~~~L~~l~~~~ 156 (447)
.+.+.+.. + .+.+....++.++.|++.+.
T Consensus 191 ~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 191 LLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 88777741 1 11234445777888888776
No 290
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.28 E-value=2 Score=36.33 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhH-HHHHHhcCC
Q 013228 55 QLQFEAAWALKNIVSGTSEDTKVVIDHGA-------VPIFVKLLAS-PSDDIREQAVCALGNVAADSARC-RDLVLSEEA 125 (447)
Q Consensus 55 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~-~~~~~~~~~ 125 (447)
.=|..|+++|++++- .+.+.+.+...+- +..|.+++.. .++..|+.++-.|.+|+..+... +..-.+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 458999999999998 5566666655443 3445555544 68999999999999999766554 455557788
Q ss_pred HHHHHHHhc
Q 013228 126 LIPLLTQLN 134 (447)
Q Consensus 126 l~~l~~~l~ 134 (447)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999983
No 291
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.24 E-value=56 Score=36.78 Aligned_cols=231 Identities=16% Similarity=0.071 Sum_probs=116.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
....++..+..++ +..+..+..+++.++..-++ ..++ ++....++.-+.+ .++..|..-..+++.+-........
T Consensus 877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 3444555566667 77888788888877762111 1111 1223444444444 5566665555555555422211100
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCC---hhHHHHHHH-------
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND---KEVMTDACR------- 188 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~v~~~al~------- 188 (447)
.-.....+..+..+...+.++.++..++.++..+...............+..+..++.+.. .++...--+
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 0001123555666664555668999999999988876633334444555555666654322 222211111
Q ss_pred ------HHHHhccCCcH--HHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc
Q 013228 189 ------ALFYLSEGTND--EIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI 260 (447)
Q Consensus 189 ------~l~~l~~~~~~--~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~ 260 (447)
+++.=...+.. .. ..+....+....-++.++++.++..+..++.++--..+.... -.-++..+..++.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t-~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDST-STLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhcccccCCCCcccch-hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence 11111111111 11 122222333344445667888999999999988765553211 1124556666666
Q ss_pred cCCchhHHHHHHHHHHHHh
Q 013228 261 HNHKKSIKTDACWTISNIT 279 (447)
Q Consensus 261 ~~~~~~v~~~a~~~l~nl~ 279 (447)
++ ..-+|.....++..+.
T Consensus 1109 s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred ch-hhhhhhhHHhhhhHHh
Confidence 65 4445555555554444
No 292
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=86.92 E-value=11 Score=28.38 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=57.4
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHHHhhccCCC----
Q 013228 275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE-GCIKPLCDLLLCAD---- 349 (447)
Q Consensus 275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~---- 349 (447)
|.+++..++..... ++..|.+-|+..++.|+..++..|..++..+.+.....+... ..+..+.+.-...|
T Consensus 25 ia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~G 99 (122)
T cd03572 25 IAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKG 99 (122)
T ss_pred HHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccC
Confidence 44444444443333 455688888888899999999999999999888777766543 34555555444222
Q ss_pred ----HHHHHHHHHHHHHHHH
Q 013228 350 ----PEIVTVFLKGLEKILK 365 (447)
Q Consensus 350 ----~~~~~~a~~~l~~l~~ 365 (447)
..++..|-+++.-++.
T Consensus 100 d~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 100 DSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cchhHHHHHHHHHHHHHHhc
Confidence 2577777777776654
No 293
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.40 E-value=17 Score=29.97 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=55.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC 116 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~ 116 (447)
.++.++++.-+++ ..++..|+..+..+....--+. ...+|.++.+..++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 4667778778888 8999999999988876321111 136799999999999999999999999998655443
No 294
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.16 E-value=10 Score=33.76 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=48.8
Q ss_pred CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhH-HHHHhcCChHHHHHhhcc-----------CCchhHHHHHHHHH
Q 013228 208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQT-QCIINCGALPYLLGLLIH-----------NHKKSIKTDACWTI 275 (447)
Q Consensus 208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~l~~~l~~-----------~~~~~v~~~a~~~l 275 (447)
-++|.++.++++.++.++..++.++..+....+... ..+.+.|..+.+.+.+.. .+...+-..+.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 368999999999999999999999999987655332 235566666555444421 11445556666666
Q ss_pred HHHh
Q 013228 276 SNIT 279 (447)
Q Consensus 276 ~nl~ 279 (447)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6663
No 295
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.12 E-value=44 Score=34.39 Aligned_cols=340 Identities=12% Similarity=0.082 Sum_probs=165.4
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHH
Q 013228 71 TSEDTKVVIDHGAVPIFVKLLAS----PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIAT 146 (447)
Q Consensus 71 ~~~~~~~~~~~~~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~ 146 (447)
..+....+.+.| +..++-++.. .+..+.-.++..|+.|+.+.. +...+.+.+++..|+..=+. .....-..
T Consensus 339 y~e~lpv~~~~g-~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~k-fa~~fv~~~gi~kll~vpr~---s~~~~g~s 413 (1516)
T KOG1832|consen 339 YVEVLPVLHEKG-VDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRK-FAAMFVERRGILKLLAVPRV---SETFYGLS 413 (1516)
T ss_pred HHHHHHHHHHhC-chhhhhhhhhhhccccccccHHHHHHHHHHHHhhH-HHHHHHHhhhhHHHhcCCCc---hhhhhhHH
Confidence 344444455544 4444444432 344455567777888877765 56677788888777765422 23333345
Q ss_pred HHHHHhcCCCC------CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-
Q 013228 147 WTLSNFCAGKP------KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH- 219 (447)
Q Consensus 147 ~~L~~l~~~~~------~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~- 219 (447)
.||+.+..... .........++..-+.++..+...-+.++...+.-... .-.....+-....++.|+.++++
T Consensus 414 ~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~-frail~~fd~~d~l~~l~~~~~~~ 492 (1516)
T KOG1832|consen 414 SCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFV-FRAILDAFDAQDSLQKLLAILKDA 492 (1516)
T ss_pred HHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56666654431 11122335666666777776554444333222211100 00111222233556666666532
Q ss_pred -------CC---c--------hhHhHHHHHHHHhhc-----CChhhHHHHHhcCChHHHHHhhccCC-----chhHHHHH
Q 013228 220 -------PS---P--------SVLTRALQTVVNIAA-----GDDFQTQCIINCGALPYLLGLLIHNH-----KKSIKTDA 271 (447)
Q Consensus 220 -------~~---~--------~v~~~a~~~l~~l~~-----~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~~v~~~a 271 (447)
.+ + ..-...|.++..... .-+..++.-++.+.....++-+..++ ..+-..+.
T Consensus 493 ~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I 572 (1516)
T KOG1832|consen 493 ASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAI 572 (1516)
T ss_pred HHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHH
Confidence 11 1 111223444433321 11222223334445555444333221 11223445
Q ss_pred HHHHHHHhcCCH-------HHHHHHHHcCChHHHHHHHhcC--------chhHHHHHHHHHHHhcCCCCHHHHHHHHHc-
Q 013228 272 CWTISNITAGNS-------EHIQAVIDAGLIGPLVNLLQNA--------EFDIKNWAARAISNATFGGTHEQIKYLVRE- 335 (447)
Q Consensus 272 ~~~l~nl~~~~~-------~~~~~l~~~~~~~~L~~~l~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~- 335 (447)
+|.+-.+....+ .-...+.+.+++..++.+...+ ..++...|..+|+-+... |.....+...
T Consensus 573 ~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~La~~~ 650 (1516)
T KOG1832|consen 573 FLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKALAHAT 650 (1516)
T ss_pred HHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHHHHHH
Confidence 555544443222 2234466677777787776632 235566677766665553 3333333321
Q ss_pred -------CChHHHHhhcc----CCCHHHHHHHHHHHHHHHHhhhhhhhhhh-h--------------ccc-------ccH
Q 013228 336 -------GCIKPLCDLLL----CADPEIVTVFLKGLEKILKVGEAEKNMDI-A--------------IGD-------VNQ 382 (447)
Q Consensus 336 -------~~l~~L~~ll~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~--------------~~~-------~~~ 382 (447)
.++..++..-. -.|++++..|+.++.|+....+...+... + ..+ ..+
T Consensus 651 ~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~ 730 (1516)
T KOG1832|consen 651 LSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQ 730 (1516)
T ss_pred hhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHH
Confidence 12222222211 14889999999999998866532221110 0 111 122
Q ss_pred HHHHHHHhchHHHHHHHhcCCCH-----HHHHHHHHHHHHh
Q 013228 383 YAQLVEEAEGLEKIENLRSHDND-----EIHEKSVKILETY 418 (447)
Q Consensus 383 ~~~~i~~~~~~~~l~~l~~~~~~-----~v~~~a~~~l~~~ 418 (447)
..+.....+|++.|.+|++..+| -++..|.+.|--+
T Consensus 731 mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GL 771 (1516)
T KOG1832|consen 731 MWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGL 771 (1516)
T ss_pred HHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcc
Confidence 33445667899999999876543 3566666655443
No 296
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.00 E-value=2.7 Score=35.59 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccC-------CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HHHHhC
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFG-------VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT-KVVIDH 81 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~-------~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~ 81 (447)
-+-|..|+.+|.+++-. ..+.+.++..+ ++..|++++....++-.|+-|+-.|.+++..+.... ..-.+.
T Consensus 138 lSPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~ 215 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK 215 (257)
T ss_pred CCHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 46789999999999887 34455555443 455667777766658899999999999998776655 444566
Q ss_pred CChHHHHHhhCCCC
Q 013228 82 GAVPIFVKLLASPS 95 (447)
Q Consensus 82 ~~i~~L~~ll~~~~ 95 (447)
+.|..|+.++++..
T Consensus 216 ~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 216 PCISHLIAFIEDAE 229 (257)
T ss_pred chHHHHHHHHHHHH
Confidence 89999999997643
No 297
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.92 E-value=4.8 Score=31.38 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=55.9
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHH---HHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDE---IHEKSV 412 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~---v~~~a~ 412 (447)
++..|..-|.+.++.++..|+..|..+++++... |...+....+++.|..+.. +.... |++++.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~------------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR------------FHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH------------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 4667777888899999999999999999987653 5666766778888888644 44444 899999
Q ss_pred HHHHHhcC
Q 013228 413 KILETYWC 420 (447)
Q Consensus 413 ~~l~~~~~ 420 (447)
.++..+-.
T Consensus 111 ~ll~~W~~ 118 (140)
T PF00790_consen 111 ELLQEWAE 118 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887643
No 298
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.61 E-value=53 Score=39.39 Aligned_cols=305 Identities=11% Similarity=0.012 Sum_probs=139.7
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-------Ch-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSG-------TS-EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA 110 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-------~~-~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~ 110 (447)
-.++.|+..+...+ +.+......++..+... .. .++..+ -.+.++.++++..++...-+...+..|..+.
T Consensus 984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi-~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPM-FEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccch-HHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 35677778888777 67766666655554321 11 111111 1234455555555555555655555666665
Q ss_pred cCChhHHHHHHhcCCHHHHHHHhcccc---ch---hHHHH-HHHHHHHhcCCC--CCCChhhHhhhHHHHHHhhccCChh
Q 013228 111 ADSARCRDLVLSEEALIPLLTQLNKHA---KL---SMLRI-ATWTLSNFCAGK--PKPIFDQVRPALPALAQLVHSNDKE 181 (447)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~---~~~~~-a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~ 181 (447)
.+.+...-.-...+++.++...+..-. .. +.... ....+.....+. +........+++..++.-+.++++.
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 554421111112344556666663211 11 11111 222222222211 2233334467788888888899999
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHh--C--cHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh-------hhHHHHHhcC
Q 013228 182 VMTDACRALFYLSEGTNDEIQAVIEA--G--VCPRLVELLGHPSPSVLTRALQTVVNIAAGDD-------FQTQCIINCG 250 (447)
Q Consensus 182 v~~~al~~l~~l~~~~~~~~~~~~~~--~--~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-------~~~~~~~~~~ 250 (447)
|+..+..+|.+++.........+++. . ..+.+..-+....-.++.--+.++..+....+ .........+
T Consensus 1142 VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHH
Confidence 99999999999986553222222211 0 11111111222222233333333333322222 1111000000
Q ss_pred C-----hHH---HHHhhccC---CchhHHHHHHHHHHHHhcCCHHHHH--HHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228 251 A-----LPY---LLGLLIHN---HKKSIKTDACWTISNITAGNSEHIQ--AVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317 (447)
Q Consensus 251 ~-----l~~---l~~~l~~~---~~~~v~~~a~~~l~nl~~~~~~~~~--~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL 317 (447)
. -.. +.+..... ....+|..+...++..+...+.... .-...+++..+...+....+++...+..++
T Consensus 1222 ~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l 1301 (3550)
T KOG0889|consen 1222 ALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGL 1301 (3550)
T ss_pred HhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0 001 11111111 0123355555555544432221111 112345677778888888899999998888
Q ss_pred HHhcCCCCHHHHHHHHHcCChHHHHhhccC
Q 013228 318 SNATFGGTHEQIKYLVREGCIKPLCDLLLC 347 (447)
Q Consensus 318 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 347 (447)
.+.... +....+..++.+ +.+|...+.+
T Consensus 1302 ~~v~~~-~~~~~ke~lq~~-lrplL~~l~d 1329 (3550)
T KOG0889|consen 1302 RKVLAQ-DVKLPKELLQSH-LRPLLMNLSD 1329 (3550)
T ss_pred Hhhhhc-cccccHHHHHhh-HHHHHHhhhH
Confidence 887664 222333334433 4444444444
No 299
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.51 E-value=48 Score=33.45 Aligned_cols=197 Identities=15% Similarity=0.123 Sum_probs=100.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhcc---ccchhHHHHHHHHHHHhcCCC-C
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNK---HAKLSMLRIATWTLSNFCAGK-P 157 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~-~ 157 (447)
.+..+..++.+....-.+ +...|..+.... .+..+. +..+..++.. ..+..+...++.+++.+.... .
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~------l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEEL------LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHH------HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHH------HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 456666666663322222 334444443222 112222 4445555532 223456666666666554322 0
Q ss_pred ---------CCChhhHhhhHHHHHHhh----ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC---C
Q 013228 158 ---------KPIFDQVRPALPALAQLV----HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP---S 221 (447)
Q Consensus 158 ---------~~~~~~~~~~l~~l~~ll----~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~---~ 221 (447)
.........+++.+...+ ...+..-+..++.+|+|+.. ...++.+..++... .
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccc
Confidence 111122234444444444 45677888889999999863 13567777887665 5
Q ss_pred chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Q 013228 222 PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH-NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300 (447)
Q Consensus 222 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ 300 (447)
..+|..|++++..++...+.. +.+.++.++.+ ..+.++|..|..+|... .-+.. .+..+..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~-~P~~~---------~l~~i~~ 599 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC-NPSPS---------VLQRIAQ 599 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT----HH---------HHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc-CCCHH---------HHHHHHH
Confidence 788999999999887666533 23456676654 33678888887666653 22222 3444555
Q ss_pred HHhc-CchhHHHHHHH
Q 013228 301 LLQN-AEFDIKNWAAR 315 (447)
Q Consensus 301 ~l~~-~~~~v~~~a~~ 315 (447)
.+.. ++..|......
T Consensus 600 ~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 600 SLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHTT-S-HHHHHHHHH
T ss_pred HHhhCchHHHHHHHHH
Confidence 5653 34555544443
No 300
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=84.40 E-value=26 Score=30.32 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=53.4
Q ss_pred cCCHHHHHHhhcCCCCH-------HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHH
Q 013228 38 FGVVPRFVEFLMREDYP-------QLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP--SDDIREQAVCALGN 108 (447)
Q Consensus 38 ~~~v~~L~~ll~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~i~~~a~~~L~~ 108 (447)
...++.++++++.++.. .+-+....++..++ .|-++.|..++.++ +.-+|..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 34899999999777610 11222223333333 36678888888875 57889999999999
Q ss_pred hhcCChhHHHHHHhcCCHHHHHHH
Q 013228 109 VAADSARCRDLVLSEEALIPLLTQ 132 (447)
Q Consensus 109 l~~~~~~~~~~~~~~~~l~~l~~~ 132 (447)
++...+..|+.+.+ .+..++..
T Consensus 140 l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 140 LVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHcCCCCHHHHHH--HHHHHHHH
Confidence 99877777777644 24444443
No 301
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.20 E-value=16 Score=32.60 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=48.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT-KVVIDHGAVPIFVK----LLA--------SPSDDIREQAVCAL 106 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~----ll~--------~~~~~i~~~a~~~L 106 (447)
++|.++.++.+.+ +.++..++.+|..+....+... ..+...|..+.+-. .+. .+...+...+.-++
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999998 9999999999999987433322 33566665544433 332 23456777777777
Q ss_pred HHhh
Q 013228 107 GNVA 110 (447)
Q Consensus 107 ~~l~ 110 (447)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 302
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=83.95 E-value=20 Score=41.55 Aligned_cols=270 Identities=15% Similarity=0.082 Sum_probs=134.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH----H-HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 87 FVKLLASPSDDIREQAVCALGNVAADSARCRDL----V-LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~----~-~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
+...+...+++++..+......+-...+.+.+. + .....+..+..+-..++++.++......+. .. ....
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~--~~~~ 560 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ER--FDAQ 560 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cc--hhhh
Confidence 334555677888887766665554333221100 0 011123333333334445554443333322 00 1111
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
..-...+..+...+++..-.++..+...+++++..++...-..+..-.+..+-.+-.+....+...+..-+..+....+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 11134445566666777778888888888888876653322222222233333333333333333333333333333333
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHh
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNA 320 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l 320 (447)
.....++ ..+..++..+..+ +..+.+.+..+++.||..+.+......+ ..++.+.+.+. .+...-+..+.+++.++
T Consensus 641 ~i~~~v~-~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 641 LISPYVG-PILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHhhcC-chHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 3332222 4556677777777 7788888999999998844333333344 45555666555 34566778888899988
Q ss_pred cCCCCHHHHHHHHHcCChHHHHhhccCCC-HHHHHHHHHHHHHHH
Q 013228 321 TFGGTHEQIKYLVREGCIKPLCDLLLCAD-PEIVTVFLKGLEKIL 364 (447)
Q Consensus 321 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~~~~~a~~~l~~l~ 364 (447)
.....--...+...--++..+...+.... ..++..++..+.++.
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 77432111111111122444444444332 344555555555443
No 303
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.75 E-value=12 Score=28.80 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=58.3
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH--HHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP--EIVTVFLKGLEKILK 365 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~~~~~a~~~l~~l~~ 365 (447)
++..|..-+.++++.++..|+..|-.+..++.......+.+.++++.|..++..... .++..++..+..-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999999878777888888999999998887543 378777777766654
No 304
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.50 E-value=45 Score=32.26 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=29.6
Q ss_pred HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228 164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~ 198 (447)
..+-+..+++-+++++++++..++..|......+.
T Consensus 45 lk~dLellVeriqd~d~~l~~~sLn~LkeviksSt 79 (881)
T COG5110 45 LKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSST 79 (881)
T ss_pred hcccHHHHHHHhhCCChHHHHHHHHHHHHHHhccc
Confidence 35678889999999999999999999988876544
No 305
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.42 E-value=51 Score=35.75 Aligned_cols=234 Identities=15% Similarity=0.110 Sum_probs=109.5
Q ss_pred ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC---CCchhHhHHHHHHHHhhcCChh-hHHHHHhcCC
Q 013228 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH---PSPSVLTRALQTVVNIAAGDDF-QTQCIINCGA 251 (447)
Q Consensus 176 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~ 251 (447)
.....+++...+.++.++.....+..-.- -..+++.+-..... ....+.+.+..++.-++...-. .-...+ .+.
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci-~~l 929 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI-LDL 929 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH-HHH
Confidence 34556777778888888876554321100 11222222222222 2345555555555544432110 000000 134
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHHhc---C-----CHHHH-HHHHH-------------cCC----hHHHHHHHhcC
Q 013228 252 LPYLLGLLIHNHKKSIKTDACWTISNITA---G-----NSEHI-QAVID-------------AGL----IGPLVNLLQNA 305 (447)
Q Consensus 252 l~~l~~~l~~~~~~~v~~~a~~~l~nl~~---~-----~~~~~-~~l~~-------------~~~----~~~L~~~l~~~ 305 (447)
++.+..+-+...+..+--.|...+.++.. . +.+.. ...++ .++ +..|.++..++
T Consensus 930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 44555555443355555555544444322 1 11111 01111 111 22233333455
Q ss_pred chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC----------------CCHHHHHHHHHHHHHHHHhhhh
Q 013228 306 EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC----------------ADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 306 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~----------------~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
..+||..|+..+..+............++.-....++.+|++ ...+.....+.++.+++.-.-+
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 688999999988887653322222222232334445555541 1123445566666666643221
Q ss_pred hhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228 370 EKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419 (447)
Q Consensus 370 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (447)
. . -..|.+....+ ..+..+..+..+.++++.-.|...+++..
T Consensus 1090 ~--l----lnln~f~~vwe--~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1090 L--L----LNLNGFLDVWE--ELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred H--H----HhcccHHHHHH--HHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 1 1 11222333333 23555666677889999888888887744
No 306
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=82.96 E-value=39 Score=36.19 Aligned_cols=242 Identities=14% Similarity=0.119 Sum_probs=129.7
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHH--------HHHHhcCC-CCchhHhHHHHHHHH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ-AVIEAGVCP--------RLVELLGH-PSPSVLTRALQTVVN 234 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~-~~~~~~~~~--------~L~~lL~~-~~~~v~~~a~~~l~~ 234 (447)
.+.+..|+..+-++..++|+-+.-+++.+......... ..++.-++. .+-.+..+ --..++..++++|+.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 56677777777788888888887777777643222111 112211111 11111221 124688899999998
Q ss_pred hhcCChh-hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHH
Q 013228 235 IAAGDDF-QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWA 313 (447)
Q Consensus 235 l~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a 313 (447)
+...-.. ... ..++.+..++..+ ..+++.-....+........+....+.. .+++..+..+.+.+.+++..|
T Consensus 156 ~l~~~~~s~~~-----~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~~-~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 156 YLKHMDESLIK-----ETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLLN-LVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHHhhhhHhhH-----HHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcchHHHHHH
Confidence 8764432 222 3567888888877 6777665555554333211122222222 267777788888899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH--HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHH-Hh
Q 013228 314 ARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP--EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVE-EA 390 (447)
Q Consensus 314 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~ 390 (447)
+..+.-.....-....+.+.. ++..+...+..-+. .-.......+..++...+... +..... +.
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~--lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~-----------l~~~~n~~~ 295 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAK--LVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLD-----------LFEQQNLEV 295 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHH--HHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHH-----------HHHHhhhhh
Confidence 988877765321111111111 22333322222111 000111112222222211111 122222 24
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 013228 391 EGLEKIENLRSHDNDEIHEKSVKILETYWCGRVAGP 426 (447)
Q Consensus 391 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 426 (447)
|.++++-....|.-..++..+.+.+..+.+.++..+
T Consensus 296 ~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~ 331 (1549)
T KOG0392|consen 296 GLVPRLWPFLRHTISSVRRAALETLAMLLEADDQSD 331 (1549)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 677778778888888899999999999988775444
No 307
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=82.87 E-value=9.5 Score=28.46 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=51.6
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH------hcCCCHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL------RSHDNDEIHEK 410 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l------~~~~~~~v~~~ 410 (447)
++..|..-+.+.++.++..++..|..+++++... |...+.....+..+..+ ....+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 4666767777889999999999999999988764 45555555555555332 12347889999
Q ss_pred HHHHHHHhc
Q 013228 411 SVKILETYW 419 (447)
Q Consensus 411 a~~~l~~~~ 419 (447)
+..+++.+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 999988764
No 308
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.87 E-value=3.1 Score=36.69 Aligned_cols=133 Identities=11% Similarity=0.026 Sum_probs=75.1
Q ss_pred CChhHHHHHHHHHHHhccCCcHHHHHHHHh-C--cHHHHHHhcCCC---CchhHhHHHHHHHHhhcCChhhH-HHHHhcC
Q 013228 178 NDKEVMTDACRALFYLSEGTNDEIQAVIEA-G--VCPRLVELLGHP---SPSVLTRALQTVVNIAAGDDFQT-QCIINCG 250 (447)
Q Consensus 178 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~--~~~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~ 250 (447)
..+..+.-++++++|+..+...+.. +.+. + ++..+....... +..++..+...+.|++....... ..-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQL-LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHH-HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHH-HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4677788899999999987665532 3222 2 233333333333 67888889999999874221111 0001112
Q ss_pred ChHHHHH-hhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHh-cCchhHHHH
Q 013228 251 ALPYLLG-LLIHNHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQ-NAEFDIKNW 312 (447)
Q Consensus 251 ~l~~l~~-~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~-~~~~~v~~~ 312 (447)
.+..+.+ +.....+++....++.+++++...++.. ....+ .|+-..+-..-. ..++.++.-
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~-~~~~~~l~~~~~~~~~~~~~~e~ri~~v 264 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA-KQLAKSLDVKSVLSKKANKSKEPRIKEV 264 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH-HHHCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH-HHHHHHcChHHHHHHHHhcccchHHHHH
Confidence 4556666 3333238899999999999999765443 33333 333333333332 234444443
No 309
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=82.74 E-value=34 Score=33.47 Aligned_cols=173 Identities=10% Similarity=0.057 Sum_probs=101.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc--c--------ccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228 93 SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN--K--------HAKLSMLRIATWTLSNFCAGKPKPIFD 162 (447)
Q Consensus 93 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~--~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (447)
+++.++...+-..|..+..+-+ +...+..|..+.. . ..+..++...+..|. +.. ....
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~---kS~--~Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS---KSV--IAAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH---HhH--HHHh
Confidence 4667888888888888775411 2223555666553 1 123445555444443 321 1111
Q ss_pred hHhhhHHHHHHhhccC--ChhHHHHHHHHH---HHhccCCcHHHHHHHHhCcHHHHHHhcC--------CCCchhHhHHH
Q 013228 163 QVRPALPALAQLVHSN--DKEVMTDACRAL---FYLSEGTNDEIQAVIEAGVCPRLVELLG--------HPSPSVLTRAL 229 (447)
Q Consensus 163 ~~~~~l~~l~~ll~~~--~~~v~~~al~~l---~~l~~~~~~~~~~~~~~~~~~~L~~lL~--------~~~~~v~~~a~ 229 (447)
....++..+...+.+. +..++..++..+ .....+.....-..+...+...+.+.+. ..+...|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1234455555556655 567777777777 5555443332222222223333333342 24567899999
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 230 QTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 230 ~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
.+||.|+...+.... -+.+.+..|.+-|..+ .++++...-.+|+.++.
T Consensus 396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHccCccccc--ccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHH
Confidence 999999988875421 2346788888888777 89999888888888875
No 310
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=82.33 E-value=23 Score=35.85 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHh
Q 013228 95 SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQL 174 (447)
Q Consensus 95 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~l 174 (447)
.+..|..++..|+.+....+..-..+.+...+..|+..|..+.+..+...|+.+|.-|.-.-+.........++....++
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRL 160 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 46778899999999998777777788888999999999988888888888988888877554444444445555555555
Q ss_pred h
Q 013228 175 V 175 (447)
Q Consensus 175 l 175 (447)
+
T Consensus 161 ~ 161 (668)
T PF04388_consen 161 L 161 (668)
T ss_pred H
Confidence 5
No 311
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=81.93 E-value=33 Score=29.70 Aligned_cols=130 Identities=14% Similarity=0.128 Sum_probs=65.9
Q ss_pred HHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-chhHHHHHHHHHHHHhcCCH
Q 013228 205 IEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITAGNS 283 (447)
Q Consensus 205 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~l~nl~~~~~ 283 (447)
.+...++.++++++.++..+- ..++-.....-...-..+-.|-++.|.+++.++. +.-+|..|+.++..++...+
T Consensus 70 re~~A~~~li~l~~~~~~~~~----~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLE----DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHH----HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 344678999999976554211 1111111101011111122356667777777653 56788999999999988766
Q ss_pred HHHHHHHHcCChHHHHHH-HhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH
Q 013228 284 EHIQAVIDAGLIGPLVNL-LQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP 340 (447)
Q Consensus 284 ~~~~~l~~~~~~~~L~~~-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~ 340 (447)
..+..+++. +..++.. +...+..+--.-+..++.+-...--..++.+.+.|.++.
T Consensus 146 ~~Re~vi~~--f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 146 ISREEVIQY--FRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred CCHHHHHHH--HHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 666666653 3334443 443333333333333333322212223444555666554
No 312
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.79 E-value=17 Score=28.37 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=57.4
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC-HH---HHHHHHHHHHHHHHhh
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD-PE---IVTVFLKGLEKILKVG 367 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~---~~~~a~~~l~~l~~~~ 367 (447)
++..|..-+.++++.++..|+..|-.+..++.+.....+....+++.|..++.... .. ++..++..+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45567777888999999999999999999877777777777788899999887543 33 7888777777665443
No 313
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=81.38 E-value=14 Score=32.51 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhh---hhcccccHHHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCCC
Q 013228 349 DPEIVTVFLKGLEKILKVGEAEKNMD---IAIGDVNQYAQLVEEAEGLEKIENLRSHD-NDEIHEKSVKILETYWCGRVA 424 (447)
Q Consensus 349 ~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~~ 424 (447)
+..+.+.++..+.|++...+...... ......+.+...|.+.|..+.|..+..+. ..+......+++.-+|.+.+.
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 44688899999999998743321110 01123445667788899999999998776 334444556666666655553
No 314
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=80.69 E-value=42 Score=34.70 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh
Q 013228 265 KSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCD 343 (447)
Q Consensus 265 ~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ 343 (447)
..+......+|..++..+++....++. .+....++.++-+++.++.+.|...|........ -.+.+..
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~-----------R~e~i~~ 563 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG-----------RLEAIQA 563 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc-----------HHHHHHH
Confidence 345566778888998888888888775 6788899999999999999999999988875432 2444444
Q ss_pred hccCCCHHHHHHHHHHHHHHHHh
Q 013228 344 LLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 344 ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
++++.-........+.+.++.+.
T Consensus 564 ll~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 564 LLQSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Confidence 55544444455555555555544
No 315
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=80.51 E-value=64 Score=32.03 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHH
Q 013228 54 PQLQFEAAWALKNIVSGTSEDTKVVI---DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLL 130 (447)
Q Consensus 54 ~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~ 130 (447)
++++.-|+.+|.-+..+..-+...+. .+..+..++..+. .++..+-.++++|.|+-.+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 57788888888888775444433333 2234445555544 4577788899999999887 4456665543 33333
Q ss_pred HHhc---cccchhHHHHHHHHHHHhcCCC--CCCChhhHhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHH
Q 013228 131 TQLN---KHAKLSMLRIATWTLSNFCAGK--PKPIFDQVRPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAV 204 (447)
Q Consensus 131 ~~l~---~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~ 204 (447)
..+. ..++..++........|++--. ...+....+-+...+..++.. +|-+.....+.+|++++..+.... .+
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~-~~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI-QL 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH-HH
Confidence 3221 2333444444332222322111 111111112222222333332 233456667888888887665443 34
Q ss_pred HHhCcHHHHHHhcC
Q 013228 205 IEAGVCPRLVELLG 218 (447)
Q Consensus 205 ~~~~~~~~L~~lL~ 218 (447)
.+.--+..++..++
T Consensus 713 A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLK 726 (745)
T ss_pred HHhcCHHHHHHHHH
Confidence 44445555555553
No 316
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=80.40 E-value=66 Score=32.14 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=78.8
Q ss_pred HHHHHHHhccc---cchhHHHHHHHHHHHhcC----CCCCCChhhHhhhHHHHHHhhc----cCChhHHHHHHHHHHHhc
Q 013228 126 LIPLLTQLNKH---AKLSMLRIATWTLSNFCA----GKPKPIFDQVRPALPALAQLVH----SNDKEVMTDACRALFYLS 194 (447)
Q Consensus 126 l~~l~~~l~~~---~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~l~~l~~ll~----~~~~~v~~~al~~l~~l~ 194 (447)
+..+..++... ....++..+..+++.+.. +.+.........+++.+...|. ..+...+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 55566666322 234566666666666553 2222112233556666665554 456666777899999887
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhcC---CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CCchhHHHH
Q 013228 195 EGTNDEIQAVIEAGVCPRLVELLG---HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH-NHKKSIKTD 270 (447)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~L~~lL~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~v~~~ 270 (447)
... .+..+..++. ..+..+|..|+++|..++...+.. +-+.++.++.+ ..+.++|..
T Consensus 475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHH
Confidence 422 2344444443 234679999999999888655533 22355666654 337788888
Q ss_pred HHHHHHHH
Q 013228 271 ACWTISNI 278 (447)
Q Consensus 271 a~~~l~nl 278 (447)
|+..+...
T Consensus 536 A~~~lm~t 543 (574)
T smart00638 536 AVLVLMET 543 (574)
T ss_pred HHHHHHhc
Confidence 87776654
No 317
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=80.16 E-value=51 Score=30.64 Aligned_cols=154 Identities=15% Similarity=0.078 Sum_probs=90.2
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc----------cCChhHHHHHHHHHHHhccCC
Q 013228 128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH----------SNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------~~~~~v~~~al~~l~~l~~~~ 197 (447)
.+...|.++.....+..++..+.-|+++............+..|..+-+ .++..+...++.||+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4455554444455566666777777776533333333444555554432 234578899999999999888
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCC----C-chhHhHHHHHHHHhhcCC-hhhHHHHHhcCChHHHHHhhccCC--------
Q 013228 198 NDEIQAVIEAGVCPRLVELLGHP----S-PSVLTRALQTVVNIAAGD-DFQTQCIINCGALPYLLGLLIHNH-------- 263 (447)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~lL~~~----~-~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~-------- 263 (447)
+.......+......+.+.+... - ..+...-++.|--+.... ....+.+.+.++++.+-+++.++.
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 87766777777777766665221 1 122222233333333222 344556677889999999886421
Q ss_pred ------chhHHHHHHHHHHHHhcC
Q 013228 264 ------KKSIKTDACWTISNITAG 281 (447)
Q Consensus 264 ------~~~v~~~a~~~l~nl~~~ 281 (447)
+....-++..++.|+..+
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeec
Confidence 123345667777787763
No 318
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.84 E-value=81 Score=32.27 Aligned_cols=390 Identities=12% Similarity=0.147 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHHHHHccC---CCCchhhhhcc--C-CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-ChhhHHHHHhC
Q 013228 9 DNNMQLEATTHIRKLLSNA---RSAPTEEVIPF--G-VVPRFVEFLMREDYPQLQFEAAWALKNIVSG-TSEDTKVVIDH 81 (447)
Q Consensus 9 ~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~--~-~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~ 81 (447)
|+.++..|+.++.+.+..+ ..+....+.+. . +-..++.++-+.. ..+|.+--.+|+-++.. .|+...
T Consensus 52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~DFP~kWp----- 125 (960)
T KOG1992|consen 52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRDFPDKWP----- 125 (960)
T ss_pred ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccccchhhH-----
Confidence 5788899999999888742 11221223222 1 2234556665555 68999999999988852 233332
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhh-cCChhHH------HHHHhcC-CHHHHHHHhc-------c-ccchh-----
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVA-ADSARCR------DLVLSEE-ALIPLLTQLN-------K-HAKLS----- 140 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~-~~~~~~~------~~~~~~~-~l~~l~~~l~-------~-~~~~~----- 140 (447)
..++.|+.-+++.|..+-..++.+-..+- +..+..| +.....+ .-.++..+++ . ..+..
T Consensus 126 tLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~l 205 (960)
T KOG1992|consen 126 TLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNIL 205 (960)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 23566777777666555544444433332 1111111 1111101 1123333332 1 12222
Q ss_pred --HHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhccCC-------------hhHHHHHHHHHHHhccCCcHHHHHH
Q 013228 141 --MLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSND-------------KEVMTDACRALFYLSEGTNDEIQAV 204 (447)
Q Consensus 141 --~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~-------------~~v~~~al~~l~~l~~~~~~~~~~~ 204 (447)
+..-.+.....|...+ |+--.......++...++++.++ ..++...|..+.-.+...++..+.+
T Consensus 206 f~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~f 285 (960)
T KOG1992|consen 206 FGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPF 285 (960)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 1222333444444443 22222233566677777766322 2445556666655555444444433
Q ss_pred HHhCcHHHHHHhcCCCC-----chhHhHHHHHHHHhhcCChh--------------------------hHHHHHhcCChH
Q 013228 205 IEAGVCPRLVELLGHPS-----PSVLTRALQTVVNIAAGDDF--------------------------QTQCIINCGALP 253 (447)
Q Consensus 205 ~~~~~~~~L~~lL~~~~-----~~v~~~a~~~l~~l~~~~~~--------------------------~~~~~~~~~~l~ 253 (447)
+. .++.....+|.+.. +.....|+..|.+.+..... ....+.+.+.++
T Consensus 286 l~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~ple 364 (960)
T KOG1992|consen 286 LP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLE 364 (960)
T ss_pred HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHH
Confidence 32 24444455554322 23455567777776642210 111222334555
Q ss_pred HHHHhhccCCchh-HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---cCchhHHHHHHHHHHHhcCCCCHHHH
Q 013228 254 YLLGLLIHNHKKS-IKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ---NAEFDIKNWAARAISNATFGGTHEQI 329 (447)
Q Consensus 254 ~l~~~l~~~~~~~-v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~---~~~~~v~~~a~~aL~~l~~~~~~~~~ 329 (447)
.+-+-+... |.+ -|+.|+-.+.-++...+...-.++.. .+..++.-.. +.++.-+..+......++..+.....
T Consensus 365 YiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~ 442 (960)
T KOG1992|consen 365 YIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKH 442 (960)
T ss_pred HHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhc
Confidence 555556655 444 45667777778876543333223322 3333333222 33555566777777777665321110
Q ss_pred HHHHH---cCChHH----HHhhccC----CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHH
Q 013228 330 KYLVR---EGCIKP----LCDLLLC----ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIEN 398 (447)
Q Consensus 330 ~~l~~---~~~l~~----L~~ll~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 398 (447)
..-.. -++++. +..-|.+ ..|-++..+++-+..+= ... + ...+ ...++.+..
T Consensus 443 Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR---~ql----------~--~~~l--m~~~p~li~ 505 (960)
T KOG1992|consen 443 GVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFR---NQL----------G--KEHL--MALLPRLIR 505 (960)
T ss_pred ceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeec---ccC----------C--hHHH--HHHHHHHHH
Confidence 00000 011221 1122222 22333333333322211 111 0 1111 334688888
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCC
Q 013228 399 LRSHDNDEIHEKSVKILETYWCGRVA 424 (447)
Q Consensus 399 l~~~~~~~v~~~a~~~l~~~~~~~~~ 424 (447)
.+..++.-|+.+|+..+++.+.-.+.
T Consensus 506 ~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 506 FLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred hccCcchHHHHHHHHHHHhccccccC
Confidence 88899999999999999999876665
No 319
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.14 E-value=99 Score=32.85 Aligned_cols=249 Identities=12% Similarity=0.098 Sum_probs=127.7
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228 84 VPIFVK-LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD 162 (447)
Q Consensus 84 i~~L~~-ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (447)
+..|-. +|+..+..++..++..+..+-...++....+.+...++.++..+ ......++...+..+.+-...-.....
T Consensus 468 vqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnm-egfPsslqvkiLkilEyAVtvvncvPe- 545 (2799)
T KOG1788|consen 468 VQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNM-EGFPSSLQVKILKILEYAVTVVNCVPE- 545 (2799)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhh-cCCChHHHHHHHHHHHHHHhhhccCcH-
Confidence 334433 45667888888888888888877777666666777788888877 344444555444444332211101100
Q ss_pred hHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC------C---------------
Q 013228 163 QVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH------P--------------- 220 (447)
Q Consensus 163 ~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~------~--------------- 220 (447)
...+. |.-+|+.+ ........+.....+...+....+.+.+-|+++.|...++. +
T Consensus 546 --qELlS-LCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnps 622 (2799)
T KOG1788|consen 546 --QELLS-LCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPS 622 (2799)
T ss_pred --HHHHH-HHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCC
Confidence 11222 23334433 23333334444444444444444445555666666544421 0
Q ss_pred Cc--------------------------hhHh------HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHH
Q 013228 221 SP--------------------------SVLT------RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIK 268 (447)
Q Consensus 221 ~~--------------------------~v~~------~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~ 268 (447)
++ .+.. ....+|..+...+.+..+.+.++.++..++.++-+. +-|
T Consensus 623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflind---ehR 699 (2799)
T KOG1788|consen 623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIND---EHR 699 (2799)
T ss_pred CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeech---HHH
Confidence 00 0100 113345555556666666667777777777776433 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------------chhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 013228 269 TDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA------------EFDIKNWAARAISNATFGGTHEQIKYLVREG 336 (447)
Q Consensus 269 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~------------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 336 (447)
......++.+....+.+.. ..-+-.+++.|+++ ........+.++..+..... .....+-+.+
T Consensus 700 SslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvng-saqrvFgeat 774 (2799)
T KOG1788|consen 700 SSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNG-SAQRVFGEAT 774 (2799)
T ss_pred HHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCc-hheeehhccc
Confidence 6666777777654333211 11233344444431 12344455566666654322 2334456677
Q ss_pred ChHHHHhhc
Q 013228 337 CIKPLCDLL 345 (447)
Q Consensus 337 ~l~~L~~ll 345 (447)
+...|...|
T Consensus 775 GFslLlttL 783 (2799)
T KOG1788|consen 775 GFSLLLTTL 783 (2799)
T ss_pred cHHHHHHHH
Confidence 777666655
No 320
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.67 E-value=87 Score=31.96 Aligned_cols=315 Identities=15% Similarity=0.097 Sum_probs=152.3
Q ss_pred hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCh
Q 013228 36 IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP-SDDIREQAVCALGNVAADSA 114 (447)
Q Consensus 36 ~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~ 114 (447)
...-.+|.+- ...++..-+|+..+|.++.-.. .+...... .-+-..++.++++. |..++-.+++++.-...+-.
T Consensus 485 l~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvs--vq~~~e~k-~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n 559 (978)
T KOG1993|consen 485 LQEALLPELA--NDHGNSRIIRRRVAWILGQWVS--VQQKLELK-PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN 559 (978)
T ss_pred HHHhhCHHhh--hcccchhHHHHHHHHHHhhhhh--eechHhHH-HHHHHHHHHhcCccccceeehHHHHHHHHhhhhcc
Confidence 3334555554 2344435678999999999876 12221111 12346788899886 77788888899888764432
Q ss_pred hHHHHHHh--cCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc--cCChhHHHHHHHHH
Q 013228 115 RCRDLVLS--EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH--SNDKEVMTDACRAL 190 (447)
Q Consensus 115 ~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~v~~~al~~l 190 (447)
-..+.+.. .+....+..++..-...+.+...+..++.+...-..........++..+-.+=+ .+.+-++...+.++
T Consensus 560 F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L 639 (978)
T KOG1993|consen 560 FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATL 639 (978)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Confidence 22222211 123344445554444455666677777666543211111111222222222211 23455666777788
Q ss_pred HHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCc---hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh
Q 013228 191 FYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSP---SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS 266 (447)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~---~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 266 (447)
.|+...-..+...+ ..++-..+.+-.+ .++ -..+.++..........+.....+. +.+|.+..++... ..
T Consensus 640 ~~lV~alg~qS~~~--~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te- 713 (978)
T KOG1993|consen 640 RNLVNALGAQSFEF--YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-TE- 713 (978)
T ss_pred HHHHHHhccCCccc--hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-hh-
Confidence 88774322111101 0112222233222 222 1223333333333333333333333 3677777777654 33
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 013228 267 IKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345 (447)
Q Consensus 267 v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 345 (447)
.-..+...+..... .+....+ -...|+.+.+.+++..-..+-....+..+..+... ......+...++++.+..-+
T Consensus 714 ~L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t--~~il~~~~~~~~L~~lf~~I 790 (978)
T KOG1993|consen 714 NLPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT--NPILGSLLFSPLLSRLFLSI 790 (978)
T ss_pred hHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--hHHHHhhhcchhhHHHHHHH
Confidence 33344444443322 3333221 12345777788877754445455555555555553 23445555566676665533
Q ss_pred --cCCCHHHHHHHHHHHHHHH
Q 013228 346 --LCADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 346 --~~~~~~~~~~a~~~l~~l~ 364 (447)
+.+.|.+...-+.++.++.
T Consensus 791 ~~~~~yP~~~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 791 AENDKYPYVMGEYLLVVARIS 811 (978)
T ss_pred HhCCCCchhHHHHHHHHHHHH
Confidence 3344554444444444443
No 321
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=77.67 E-value=85 Score=31.85 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=71.2
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 119 (447)
.|+.|..+-..+- +.++.+++..+..+....|+.-.. ++..++.-+.+++..+...|...|.+|....|.++..
T Consensus 305 fievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 4455555555566 899999999999988867775443 4566888888888899999999999998888876554
Q ss_pred HHhcCCHHHHHHHhc-cccchhHHHHHHHHHHHhcCC
Q 013228 120 VLSEEALIPLLTQLN-KHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 120 ~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~ 155 (447)
+ +..+..++. .+.+.....+|+..|..+...
T Consensus 379 v-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 379 V-----IDEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred h-----HHHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 4 344444442 233444455566666655433
No 322
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=77.30 E-value=56 Score=29.55 Aligned_cols=171 Identities=11% Similarity=0.070 Sum_probs=80.2
Q ss_pred CHHHHHHhhc-CC--CCHHHHHHHHHHHHHHcCCChhhHHHHHhC-----------CChHHHHHhhC------CCCHHHH
Q 013228 40 VVPRFVEFLM-RE--DYPQLQFEAAWALKNIVSGTSEDTKVVIDH-----------GAVPIFVKLLA------SPSDDIR 99 (447)
Q Consensus 40 ~v~~L~~ll~-~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~i~~L~~ll~------~~~~~i~ 99 (447)
++..|+.++- .. ..-++|..|+.++.....++++.+..+++. .....|+..|- +.++.-.
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~ 114 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRC 114 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHH
Confidence 4445555442 22 236899999999999999899988877652 01112333332 1233333
Q ss_pred HHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-cC
Q 013228 100 EQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-SN 178 (447)
Q Consensus 100 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~ 178 (447)
-.|+.+|..+..+++..++....- ........+......+.+...|+.-+. ..
T Consensus 115 wfAa~il~hll~dn~~~Ke~al~V--------------------------~~~~~~~ge~~vtliq~v~~lL~~~l~~~~ 168 (312)
T PF04869_consen 115 WFAAVILMHLLRDNPEAKEQALRV--------------------------TEGDESSGEEPVTLIQTVSELLIASLRRNS 168 (312)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHTT----------------------------EE--STTS--EEHHHHHHHHTTT----T-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHcc--------------------------cCCCCCCCCCcccHHHHHHHHHHhhhhcCC
Confidence 345555555555555554443321 000000001111111112222222222 34
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC---CCchhHhHHHHHHHHhh
Q 013228 179 DKEVMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGH---PSPSVLTRALQTVVNIA 236 (447)
Q Consensus 179 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~---~~~~v~~~a~~~l~~l~ 236 (447)
++.++..-+..|..-...++.....++.. +.++.|+..... .+.-++-.++..|+-+-
T Consensus 169 d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 169 DPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Confidence 56666666666655555555555666655 578888887533 33445555555555443
No 323
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=76.86 E-value=40 Score=27.60 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=53.3
Q ss_pred CChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 250 GALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 250 ~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
..++.+.+-|... +...+--|...+..+... ..+.+-.++.. ++..+...|++.++++...++.+|..+...
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4677888888777 666677777777766654 44544444444 777788889999999999999999999543
No 324
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=76.69 E-value=40 Score=27.57 Aligned_cols=74 Identities=8% Similarity=-0.006 Sum_probs=53.4
Q ss_pred CcHHHHHHhcCCCCchhHhHHHHHHHHhhcC-ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228 208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAG-DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS 283 (447)
Q Consensus 208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~ 283 (447)
-.++.+..-|...+...+--|...+..+... ..+..-.++ ..++..+...|.+. ++++...++.+|..++..++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence 4577778888777777777777777777655 333322222 35777788888888 99999999999999966443
No 325
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=76.34 E-value=35 Score=26.66 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=53.1
Q ss_pred ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH-HHHHhcC---CCHHHHHHH
Q 013228 337 CIKPLCDLLL-CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK-IENLRSH---DNDEIHEKS 411 (447)
Q Consensus 337 ~l~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l~~l~~~---~~~~v~~~a 411 (447)
++..|..=+. +.++.++..++..|..+++++... |...+..-++++. |..+... ...+|+.+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki 106 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV 106 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence 3445555444 468888889999999999988764 5666666777776 7777652 346899999
Q ss_pred HHHHHHhcC
Q 013228 412 VKILETYWC 420 (447)
Q Consensus 412 ~~~l~~~~~ 420 (447)
..++..+..
T Consensus 107 l~li~~W~~ 115 (141)
T cd03565 107 LALIQAWAD 115 (141)
T ss_pred HHHHHHHHH
Confidence 999998764
No 326
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=76.00 E-value=28 Score=28.06 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHHHccCC-----CC---chhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 9 DNNMQLEATTHIRKLLSNAR-----SA---PTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 9 ~~~~~~~a~~~l~~l~~~~~-----~~---~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
+...+..++..+..+....+ .+ ....+++..+.+.+.+.+.+++ +.+-..+++++..+.. ..+..+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~---~~~~~Lk~ 110 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLS---RFRSHLKL 110 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45677788888887766531 12 3445667778888999888888 8999999999999885 23333321
Q ss_pred -CC-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 013228 81 -HG-AVPIFVK-LLASPS--DDIREQAVCALGNVAADSARCRDLVLSE 123 (447)
Q Consensus 81 -~~-~i~~L~~-ll~~~~--~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 123 (447)
.+ .++.++. +++++. ...|..++.++..+|.++.-..+.....
T Consensus 111 ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 111 ELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNY 158 (168)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHc
Confidence 12 2344444 565533 4678889999999998766555554443
No 327
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=75.47 E-value=64 Score=29.34 Aligned_cols=181 Identities=12% Similarity=0.115 Sum_probs=104.0
Q ss_pred hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-hhc---cC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 013228 223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLG-LLI---HN----HKKSIKTDACWTISNITAGNSEHIQAVIDAGL 294 (447)
Q Consensus 223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~-~l~---~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 294 (447)
.+++..+..+.......++. .. +....++.+++ +|. .. +++++-.-...++..+-....+....+.+. +
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence 35566667776666544422 22 33356666665 332 12 134444444444444433222334444444 5
Q ss_pred hHHHHHHHhcC---chhHHHHHHHHHHHhcCCC-------CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228 295 IGPLVNLLQNA---EFDIKNWAARAISNATFGG-------THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 295 ~~~L~~~l~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~ 364 (447)
+...+.++..+ -|+.|..-...|..+...+ +++..+. +++.++..+++.+.++...++.++..++
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 66677777643 3788877777777776532 2222222 5778888889999999999999999999
Q ss_pred HhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH----hcCCCHHHHHHHHHHHHHhcC
Q 013228 365 KVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL----RSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~ 420 (447)
....+.. ..+...|-+.-.++.+..+ ..+...-..+.-..+|.+++.
T Consensus 194 ~~~~~~~---------~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 194 NNVSKTN---------PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 8776611 1134555555555555543 444555556666788888874
No 328
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=75.14 E-value=45 Score=35.81 Aligned_cols=233 Identities=18% Similarity=0.141 Sum_probs=126.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh--HHHHHHhcCCHHHHHHHhc---------cccchhHHHHHHHHHH
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSAR--CRDLVLSEEALIPLLTQLN---------KHAKLSMLRIATWTLS 150 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~--~~~~~~~~~~l~~l~~~l~---------~~~~~~~~~~a~~~L~ 150 (447)
+.++.|+..+-++..++|..+..++..+...... .+.. .+. .+..++..+. ..--..+++.++|+|.
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~-led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYEL-LED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHH-HHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 4567777777788899999888888887632211 1111 111 1111111111 0112368888999998
Q ss_pred HhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHH
Q 013228 151 NFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ 230 (447)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~ 230 (447)
.+..+- ........+..+.++++.+..+++.-.+..+........+... ..-..+++..+.-|.+.+..++..|..
T Consensus 155 ~~l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 155 AYLKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGLEDSDDDVRSVAAQ 230 (1549)
T ss_pred HHHHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 888653 2223355677778888877777776666665544321111111 111235667777788888999998888
Q ss_pred HHHHhhcCChhh-HHH--HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHH----HHcCChHHHHHHHh
Q 013228 231 TVVNIAAGDDFQ-TQC--IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAV----IDAGLIGPLVNLLQ 303 (447)
Q Consensus 231 ~l~~l~~~~~~~-~~~--~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l----~~~~~~~~L~~~l~ 303 (447)
.+...+...... ... .+.+.....+.++..-. .. .......+..++... +..... .+.|++|.+...+.
T Consensus 231 ~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~--~s-~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~ 306 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLS--SS-TASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLR 306 (1549)
T ss_pred HhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcc--hh-hHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHH
Confidence 877665433111 111 11112223333333211 00 011111222333322 111111 13588999999998
Q ss_pred cCchhHHHHHHHHHHHhcCCC
Q 013228 304 NAEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 304 ~~~~~v~~~a~~aL~~l~~~~ 324 (447)
+.-..++..++..+..+....
T Consensus 307 ~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 307 HTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 887888888888888887654
No 329
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=74.51 E-value=20 Score=24.34 Aligned_cols=51 Identities=29% Similarity=0.446 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228 354 TVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418 (447)
Q Consensus 354 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (447)
..++.+|..|-..... .+.+...+.-..+..|..|++++|...|..++..+
T Consensus 19 ~~~l~~L~~L~~~~~t--------------~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 19 SRCLDILKKLKKLPIT--------------VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHHHHHhcCCCC--------------HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4566666666543222 57778788888899999999999999999998875
No 330
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=74.16 E-value=30 Score=31.74 Aligned_cols=72 Identities=8% Similarity=0.027 Sum_probs=59.3
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL-CADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~a~~~l~~l~~ 365 (447)
.+..+.+-+...++.|...|+..+..+..++....+..+....+...|..++. +..+.+....-..+.+..+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999888888888888888888999988 5677777766656555554
No 331
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.97 E-value=1.2e+02 Score=32.40 Aligned_cols=137 Identities=9% Similarity=-0.003 Sum_probs=88.8
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh
Q 013228 264 KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCD 343 (447)
Q Consensus 264 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ 343 (447)
++.+|..+..-|+-.+..-|+ .+++...+..+-..|.+.+..||..++.+|..+.........-.+....+=..+++
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 788999888888877665454 56777788888888888999999999999999988632222222233345566777
Q ss_pred hc-cCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228 344 LL-LCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGR 422 (447)
Q Consensus 344 ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (447)
+. .+.+..++...+..+...... ..+. ..-+..+-.++.+.+++++..|...+..-+...
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~~------------------g~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~ 437 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSSS------------------GLLS-DKDILIVYSLIYDSNRRVAVAAGEFLYKKLFER 437 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhcc------------------cccC-hhHHHHHHHHHhccCcchHHHHHHHHHHHhhcc
Confidence 77 334445554443333222211 1111 222455667888889999888888777655433
No 332
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=73.30 E-value=16 Score=28.52 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC---------cHHHHHHH----H
Q 013228 141 MLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT---------NDEIQAVI----E 206 (447)
Q Consensus 141 ~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~---------~~~~~~~~----~ 206 (447)
++...+.++..++... |... ...++.++.+++. ++......+..|..+.+.- ..+...+. +
T Consensus 4 i~~kl~~~l~~i~~~~~P~~W----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQW----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhC----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4555666666666544 2322 3456666666666 3444444555554443210 11111111 1
Q ss_pred --hCcHHHHHHhcCCCC----chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228 207 --AGVCPRLVELLGHPS----PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275 (447)
Q Consensus 207 --~~~~~~L~~lL~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l 275 (447)
..++..+.+.+.... ......++.++.....-.+ ...+.+.+.++.+..++.++ .++..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 134555555554322 7788999999999887443 34567778999999999555 4577777664
No 333
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=73.16 E-value=70 Score=28.70 Aligned_cols=79 Identities=19% Similarity=0.407 Sum_probs=63.1
Q ss_pred cCChHHHHHHHhcC--chhHHHHHHHHHHHhcCCCCH-HHHHHHHHcCChHHHHhhccCC---CHHHHHHHHHHHHHHHH
Q 013228 292 AGLIGPLVNLLQNA--EFDIKNWAARAISNATFGGTH-EQIKYLVREGCIKPLCDLLLCA---DPEIVTVFLKGLEKILK 365 (447)
Q Consensus 292 ~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~l~~L~~ll~~~---~~~~~~~a~~~l~~l~~ 365 (447)
.|++..++..+..+ +...|..-+.++-.+....++ ....++.+.|.++.++..+-++ +..+.....+.|+.+++
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 56778888877743 677888999999999998777 4566888999999998876544 34688899999999999
Q ss_pred hhhhh
Q 013228 366 VGEAE 370 (447)
Q Consensus 366 ~~~~~ 370 (447)
.....
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 87654
No 334
>PLN03205 ATR interacting protein; Provisional
Probab=71.79 E-value=85 Score=29.08 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=96.6
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccC---CcHHHHHHHHhCcHH---HHHHhc-CCCCchhHhHHHHHHHHhhc
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEG---TNDEIQAVIEAGVCP---RLVELL-GHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~---~~~~~~~~~~~~~~~---~L~~lL-~~~~~~v~~~a~~~l~~l~~ 237 (447)
..++..|+.+..-++..+...+++.|..+.++ +..+.+.-.+.+.+. .+.+.. .+..+.++..|+.++.-+..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 55667777777777777777777777655532 223333333334333 333332 45677889999888877765
Q ss_pred CChh--hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH---------------------Hc--
Q 013228 238 GDDF--QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI---------------------DA-- 292 (447)
Q Consensus 238 ~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~---------------------~~-- 292 (447)
..+. .++.+....+++.+..+|+......|++++...+--+... |.....+. ..
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCCccccccccccccccccccHHHH
Confidence 4442 3455666677888999998765678888887655433211 11111111 00
Q ss_pred -CChHHHHHHHhc-----CchhHHHHHHHHHHHhcCCCC
Q 013228 293 -GLIGPLVNLLQN-----AEFDIKNWAARAISNATFGGT 325 (447)
Q Consensus 293 -~~~~~L~~~l~~-----~~~~v~~~a~~aL~~l~~~~~ 325 (447)
.++.-|-+++.. .+.++++.+...|..++..+.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 134455555553 367889999999998887653
No 335
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=71.66 E-value=41 Score=32.52 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=57.9
Q ss_pred HHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhcCCC------------CHHHHHHHHHcCChHHHHhhccC-CC
Q 013228 284 EHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNATFGG------------THEQIKYLVREGCIKPLCDLLLC-AD 349 (447)
Q Consensus 284 ~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~------------~~~~~~~l~~~~~l~~L~~ll~~-~~ 349 (447)
...+-+.+.++++.|+.+|. +.+..++..|+..|+.+.... .......+.....+..|+..+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 44455567899999999998 347788899998887775422 13345666677778877775442 33
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013228 350 PEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 350 ~~~~~~a~~~l~~l~~~~ 367 (447)
......++.++..+++..
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 555667778888888655
No 336
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=71.14 E-value=91 Score=29.14 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=122.7
Q ss_pred chhHHHHHHHHHHHhcCCC---CCCChhhHhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHH
Q 013228 138 KLSMLRIATWTLSNFCAGK---PKPIFDQVRPALPALAQLVHSN--DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPR 212 (447)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 212 (447)
+.++..+|+.+++.+..+. ..........++...+..+.++ +-.+....+++|..---... ++....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-----~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-----IMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-----ccchhhHHH
Confidence 6678888999999888665 1122222233555566666443 45667777777764332211 222333444
Q ss_pred HHHhc---C--CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc--CC-HH
Q 013228 213 LVELL---G--HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA--GN-SE 284 (447)
Q Consensus 213 L~~lL---~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~--~~-~~ 284 (447)
++..+ . -++..+....+.++.++....+.....-. ...++.++..+-+. ...+|..|..++..+.. +. ..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence 44443 2 25567888889999999876664422111 13677887777777 67777766555544432 21 11
Q ss_pred HHH---HHHHc----C-----ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCC-HHHHHHHHHcCChHHHHhhccCCCHH
Q 013228 285 HIQ---AVIDA----G-----LIGPLVNLLQNAEFDIKNWAARAISNATFGGT-HEQIKYLVREGCIKPLCDLLLCADPE 351 (447)
Q Consensus 285 ~~~---~l~~~----~-----~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~ 351 (447)
..+ ...+. + +.+.|..++..++......-+|...-...... -+....+ +..+.....+++++++.
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~ 289 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQ 289 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHH
Confidence 111 12221 2 23346666666333333333333332222222 1222222 23566777789999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 013228 352 IVTVFLKGLEKILKVG 367 (447)
Q Consensus 352 ~~~~a~~~l~~l~~~~ 367 (447)
++..|..+-..++...
T Consensus 290 ~k~~A~~aW~~liy~~ 305 (372)
T PF12231_consen 290 VKIQAFKAWRRLIYAS 305 (372)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988743
No 337
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.65 E-value=1.2e+02 Score=30.39 Aligned_cols=305 Identities=11% Similarity=0.093 Sum_probs=143.1
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228 84 VPIFVK-LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD 162 (447)
Q Consensus 84 i~~L~~-ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (447)
++.+++ +..+.++.-|..|-.+|..++..++ +- ..-.-++.+++.+--+--|..+|..+..........
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~spe-cl---------skCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSESPE-CL---------SKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccCHH-HH---------HHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 344554 3355788888888888888875543 31 111222323444444555666666666554322223
Q ss_pred hHhhhHHHHHHhhccCChh----HHHHHHHHHHHhccCC--cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhh
Q 013228 163 QVRPALPALAQLVHSNDKE----VMTDACRALFYLSEGT--NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIA 236 (447)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~----v~~~al~~l~~l~~~~--~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~ 236 (447)
..-++-..++..+....|+ +....+..++.+.... +.+.....=...+.-+.+++..++.+--.-++.++..+.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 3334444555655554333 3333444444444210 111011111245666677776666655555666666554
Q ss_pred cCChhhHHHHHhcCCh------HHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH----HHh---
Q 013228 237 AGDDFQTQCIINCGAL------PYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN----LLQ--- 303 (447)
Q Consensus 237 ~~~~~~~~~~~~~~~l------~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~----~l~--- 303 (447)
..-. ..+.. ..+..-+++..-.++-.-++..|......+ .+.=.+.|.+..+++ ++.
T Consensus 157 qemN-------~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~n---lnd~~q~~L~~~vL~L~l~Cl~FDf 226 (1082)
T KOG1410|consen 157 QEMN-------QADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLN---LNDRAQLGLLMQVLKLNLNCLNFDF 226 (1082)
T ss_pred HHhh-------CCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccC---cccHhHhhHHHHHHHHHhhhccccc
Confidence 2110 00000 011111111101223333333333322100 000011122222222 221
Q ss_pred --cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 013228 304 --NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVN 381 (447)
Q Consensus 304 --~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 381 (447)
+... +...-+++.-. ....+..+.+...+..+.++.++-.++....++.+|..+.......-+. ..-.
T Consensus 227 iGss~D----Essed~ctVQI--PTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~----aeRa 296 (1082)
T KOG1410|consen 227 IGSSTD----ESSEDLCTVQI--PTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNG----AERA 296 (1082)
T ss_pred cccccc----cccccccceec--CcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCC----HHHH
Confidence 1100 11112222222 2234556667778888999999999999999999998887654432110 0011
Q ss_pred HHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228 382 QYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419 (447)
Q Consensus 382 ~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (447)
.|..-+. .|..+.|++-+.-.+++-+..-.+++.++-
T Consensus 297 ~yl~~Lv-~Gvk~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 297 KYLQHLV-EGVKRILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred HHHHHHH-HHHHHHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 1233333 466666666666667777777777777653
No 338
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.42 E-value=1e+02 Score=32.73 Aligned_cols=136 Identities=9% Similarity=0.076 Sum_probs=89.7
Q ss_pred cCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH--HHHHHHHHcCC
Q 013228 217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS--EHIQAVIDAGL 294 (447)
Q Consensus 217 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~--~~~~~l~~~~~ 294 (447)
-++-.+.+|..++..|+-.+...| ..+++...+..+=-.|.+. +..||..++.+|-.|..... ...+.+ -..+
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~~~L~lF-tsRF 370 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDKDKLELF-TSRF 370 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccchHHHHH-HHHH
Confidence 356778999999999999988777 4577777788887788888 99999999999999977522 222223 3346
Q ss_pred hHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228 295 IGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 295 ~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~ 364 (447)
=..++++.. .-+..|+...+..+.-+... .++...-+..+..++-+.+++++.++...+..-+
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~-------g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSS-------GLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhcc-------cccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 667777772 33455554444333322221 1223334667777888888877777666655443
No 339
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=70.24 E-value=22 Score=32.59 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=59.2
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDEIHEKSVKIL 415 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~v~~~a~~~l 415 (447)
++..|..=+.+.++.++..|+..+..+..++++. |+..+..-.+...|..+.. +..+.|.++...++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 5777888889999999999999999999988775 5666777777788888877 77888888888888
Q ss_pred HHhcC
Q 013228 416 ETYWC 420 (447)
Q Consensus 416 ~~~~~ 420 (447)
.++-+
T Consensus 114 ~eWse 118 (462)
T KOG2199|consen 114 KEWSE 118 (462)
T ss_pred HHHHH
Confidence 77755
No 340
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=69.22 E-value=25 Score=21.83 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=30.2
Q ss_pred HHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 013228 384 AQLVEEAEGLEKIENLRSH-DNDEIHEKSVKILETY 418 (447)
Q Consensus 384 ~~~i~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~ 418 (447)
.+.+.+++.-..+..+..+ ++++++..|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5778889999999999888 9999999999999875
No 341
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=69.13 E-value=97 Score=28.69 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=79.9
Q ss_pred CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCC-----HHHHHHHHHcCCh
Q 013228 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGN-----SEHIQAVIDAGLI 295 (447)
Q Consensus 221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~-----~~~~~~l~~~~~~ 295 (447)
...-++.|...+.+...+-++.... .++.-+++..+. +..+|..|..-|-.+|.+. .+....++..+-+
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~ed~-d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl 110 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLCEDD-DVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASL 110 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhcccccc-chhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHH
Confidence 3445666778888887777655553 444566777777 8899999988888877652 1222233333344
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 296 ~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
..|..-...+|..+|+.+...|..=...-..+....=++..+++-+-..|.+-+.+--...+..|.++-...
T Consensus 111 ~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~ 182 (460)
T KOG2213|consen 111 TGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQ 182 (460)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccc
Confidence 444444444577777777776654333223333333334444555555555544443444555555554433
No 342
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=69.05 E-value=32 Score=23.41 Aligned_cols=35 Identities=20% Similarity=0.484 Sum_probs=30.9
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228 384 AQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418 (447)
Q Consensus 384 ~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (447)
.+.+.+.+.-..+..|..|++++++..|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 57788888888899999999999999999998865
No 343
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=68.89 E-value=1.3e+02 Score=30.80 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=52.6
Q ss_pred CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS 283 (447)
Q Consensus 221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~ 283 (447)
.+..|..++..|+.++...+...-.+.+..++..|++.|....+..+...|+.+|..+.-.-+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 456789999999999998888888899999999999999877577788888888887765433
No 344
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=67.94 E-value=55 Score=30.15 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=65.2
Q ss_pred hhhHHHHHHhhccC-------ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC----------CCCchhHhH
Q 013228 165 RPALPALAQLVHSN-------DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG----------HPSPSVLTR 227 (447)
Q Consensus 165 ~~~l~~l~~ll~~~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~----------~~~~~v~~~ 227 (447)
..++|.+++++... +.......+..+..|..++.-....-+. .+++.++.++- .+.+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45677777766532 5667777888888888776544432222 37788877762 234689999
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh-HHHHHHHHHHHH
Q 013228 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS-IKTDACWTISNI 278 (447)
Q Consensus 228 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-v~~~a~~~l~nl 278 (447)
|+.+++.++......... +...+...+.+.+.++..+. ...-|...|..+
T Consensus 288 AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999998543322111 22234445666665542222 244444444444
No 345
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=67.69 E-value=1.2e+02 Score=29.34 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228 326 HEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS 401 (447)
Q Consensus 326 ~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~ 401 (447)
......+.+.++++.|+.+|.. .++++...|...|..++..+.............+++.+.+.....++.|.+.+-
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 3456777889999999999974 566888899999999998776433211112345788899998888888877643
No 346
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=67.66 E-value=20 Score=25.12 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=43.9
Q ss_pred hcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh----cCchhHHHHHHHHHH
Q 013228 248 NCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ----NAEFDIKNWAARAIS 318 (447)
Q Consensus 248 ~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~----~~~~~v~~~a~~aL~ 318 (447)
+..++.++..++.+..+.++|.....++.++.....+.+ ..| .+.+..++. +++..+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345677788887665588999999999999977544332 443 444555544 456777777766553
No 347
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=66.28 E-value=1.5e+02 Score=29.75 Aligned_cols=249 Identities=13% Similarity=0.183 Sum_probs=119.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCChhHHH
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP--SDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
+-.|...+++++ ..++..++.-|+-.-.++. ++.+. ..|..++.+. +.++...+...|+.+.-.+.+-
T Consensus 454 lALLsdyv~~~~-s~~ri~aIlGLglayaGsq--~e~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~-- 523 (878)
T KOG2005|consen 454 LALLSDYLQSSS-SIHRIGAILGLGLAYAGSQ--REEVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNE-- 523 (878)
T ss_pred HHHHHHhccCCC-ceeehHHhhhhHHhhcCCc--hHHHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCCh--
Confidence 445556667777 6788888777776544332 22222 2566666653 4567777777887776444321
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~ 198 (447)
.+ ...++..+++.-.........+.....|..+..... ..+.....-++.-...++..+-..+...+....
T Consensus 524 dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGT 594 (878)
T KOG2005|consen 524 DV-TSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGT 594 (878)
T ss_pred HH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 11 111233333332111122333333334444433221 112222222222223333322222211111111
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCC---chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228 199 DEIQAVIEAGVCPRLVELLGHPS---PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275 (447)
Q Consensus 199 ~~~~~~~~~~~~~~L~~lL~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l 275 (447)
...-.+ +. ..+..+-.... +.-+..|+.-++-++.+.+-..+. .+..+-.++..+ ++.+|+..-.++
T Consensus 595 Gnvl~I-q~---q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal 664 (878)
T KOG2005|consen 595 GNVLKI-QS---QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLAL 664 (878)
T ss_pred CceEEe-ch---hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 100000 00 11222221111 111223444444444444422222 345666677777 888888888888
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 013228 276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGT 325 (447)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~ 325 (447)
+-++..+|. -+++..|-+.....|.++..+++.+++-+-...+
T Consensus 665 ~llsvSNPq-------~~vlDtLsk~shd~D~eva~naIfamGLiGAGTn 707 (878)
T KOG2005|consen 665 GLLSVSNPQ-------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTN 707 (878)
T ss_pred hhhccCCCc-------chHHHHHHHhccCcchHHHHHHHHHhccccCCcc
Confidence 888776665 2367777777778888888888888877665433
No 348
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=65.84 E-value=1.5e+02 Score=29.69 Aligned_cols=245 Identities=13% Similarity=0.147 Sum_probs=114.5
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 013228 38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT-------KVVIDHGAVPIFVKLLAS-PSDDIREQAVCALGNV 109 (447)
Q Consensus 38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-------~~~~~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l 109 (447)
.+-++.+++-++.++ ++++..|+..+....+.+.... +.+.. -...|..+..+ .+++.++..+.+|+-|
T Consensus 47 k~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk~laDIlSvL 123 (878)
T KOG2005|consen 47 KGDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKKWLADILSVL 123 (878)
T ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHhHHHHHHHHH
Confidence 467899999999999 9999999999998776332221 11111 12233333333 5678899999999999
Q ss_pred hcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC--CCCChhhHhhhHHHHHHh-hccCChhHHHHH
Q 013228 110 AADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK--PKPIFDQVRPALPALAQL-VHSNDKEVMTDA 186 (447)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~l-l~~~~~~v~~~a 186 (447)
|....+.... ...........+- .-.. +..++.+..+..-.... ........-.+...++.+ ++++.+ ..|
T Consensus 124 amt~se~~~~-l~YRl~G~~~d~~-~WGH-eYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE---~eA 197 (878)
T KOG2005|consen 124 AMTMSERGEH-LAYRLLGSIIDLG-SWGH-EYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAE---FEA 197 (878)
T ss_pred heeecccchh-eeeeeccccCChh-hhHH-HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccch---hHH
Confidence 8544432222 1111111000000 0111 23333333333322221 222222223333334433 233221 122
Q ss_pred HHHHHHhccCCcHHHHHHHHhCc-------HHHHHHhcCCCC-chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh
Q 013228 187 CRALFYLSEGTNDEIQAVIEAGV-------CPRLVELLGHPS-PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL 258 (447)
Q Consensus 187 l~~l~~l~~~~~~~~~~~~~~~~-------~~~L~~lL~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~ 258 (447)
+..|..+-.- +..-..++..- +....+++-.++ ..+.+.|+.+-..+....... ...+..+-.+.+.+.
T Consensus 198 iDlL~Eve~i--d~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al-~~ai~l~~~~~v~~v 274 (878)
T KOG2005|consen 198 IDLLMEVEGI--DLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRAL-VGAIRLDDMKEVKEV 274 (878)
T ss_pred HHHHHHhhhH--hHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHH-HHHHhcCcHHHHHHH
Confidence 2222222110 00011111111 222222222222 224444555444444433322 233444666777777
Q ss_pred hccCCchhHHHHHHHHHHHHhc---CC-HHHHHHHHHcCC
Q 013228 259 LIHNHKKSIKTDACWTISNITA---GN-SEHIQAVIDAGL 294 (447)
Q Consensus 259 l~~~~~~~v~~~a~~~l~nl~~---~~-~~~~~~l~~~~~ 294 (447)
+.+..++..++..+++|+.--. .+ .+..+.++.++-
T Consensus 275 f~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~ 314 (878)
T KOG2005|consen 275 FTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNGK 314 (878)
T ss_pred HHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHcccc
Confidence 7776688999999999875432 11 244555655443
No 349
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=65.65 E-value=9.6 Score=27.88 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHH
Q 013228 57 QFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100 (447)
Q Consensus 57 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~ 100 (447)
....+..+..++. .|+.-..+++.|+++.|+.+|.+++.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3566777888888 789999999999999999999998877653
No 350
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.42 E-value=11 Score=33.99 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCChhhHHHHHhCCChHHHHHh--hCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 013228 60 AAWALKNIVSGTSEDTKVVIDHGAVPIFVKL--LASPSDDIREQAVCALGNVAADSARCRDLVLSE 123 (447)
Q Consensus 60 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l--l~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 123 (447)
..+.+++++...++..+.+.+.|+++.++.- +++.+|-+++..+.++.+|..++...++.+...
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 5678999999899999999999999998874 356789999999999999999888777776543
No 351
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.32 E-value=1.6e+02 Score=29.67 Aligned_cols=99 Identities=9% Similarity=0.189 Sum_probs=61.1
Q ss_pred HHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC-----ChhhHHHHHhcCChHHHHHhhccCC---chhHHHHHHH
Q 013228 202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG-----DDFQTQCIINCGALPYLLGLLIHNH---KKSIKTDACW 273 (447)
Q Consensus 202 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~-----~~~~~~~~~~~~~l~~l~~~l~~~~---~~~v~~~a~~ 273 (447)
..+.+...++.+..+..+-.+.....++.|+..++.- +...+...+. ..++-..+++.+++ ++.--.+-|.
T Consensus 249 s~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il~np~~LsD~~nyHeFCR 327 (1082)
T KOG1410|consen 249 SSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRILENPQGLSDPANYHEFCR 327 (1082)
T ss_pred HHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHhCCcCCCCcchHHHHHH
Confidence 3456667888999999888888889999999988741 2212222222 23444455555442 4555566777
Q ss_pred HHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 013228 274 TISNITAGNSEHIQAVIDAGLIGPLVNLLQ 303 (447)
Q Consensus 274 ~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~ 303 (447)
.++.+-.. -+..+++.-...|.+++++.
T Consensus 328 llaRlktN--YQL~ELv~v~~Y~e~irLiA 355 (1082)
T KOG1410|consen 328 LLARLKTN--YQLGELVKVECYPEVIRLIA 355 (1082)
T ss_pred HHHHHHhh--hhhHhhhccCCcHHHHHHHH
Confidence 77776332 34556666566666666654
No 352
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.18 E-value=31 Score=32.99 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=58.3
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH-hcC-CCHHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL-RSH-DNDEIHEKSVKI 414 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l-~~~-~~~~v~~~a~~~ 414 (447)
++..|..-+.+.++.++..|+..|..++++++.. |...+.+.++++.+..+ -++ .+..|++++..+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~------------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~L 106 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS------------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILEL 106 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHH
Confidence 4666777778888888999999999999988775 56677778888777766 344 678899999999
Q ss_pred HHHhcCCCC
Q 013228 415 LETYWCGRV 423 (447)
Q Consensus 415 l~~~~~~~~ 423 (447)
|+.+.+.-.
T Consensus 107 I~~W~~af~ 115 (470)
T KOG1087|consen 107 IDTWQQAFC 115 (470)
T ss_pred HHHHHHHcc
Confidence 998765433
No 353
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.89 E-value=76 Score=29.40 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=79.9
Q ss_pred ChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHH
Q 013228 251 ALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIK 330 (447)
Q Consensus 251 ~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 330 (447)
-+.-++..+++. +..+|..|..-+..+....+.....- ...+++.+..+..+.+..+|.....++-.+.....++...
T Consensus 59 tlkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 356688888888 99999999999888766544433311 2336777888888889999999999988876654444422
Q ss_pred HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 331 YLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 331 ~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
.++. =.++.+...+.+-.++++..++..+.-++....
T Consensus 137 p~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 137 PMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred chHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 2111 124444555666788899999988888887653
No 354
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=64.86 E-value=15 Score=25.75 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHH
Q 013228 122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRAL 190 (447)
Q Consensus 122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l 190 (447)
+...+.|+...+....+.++++..+.++.++.......-..-...++..+-....++++++...|..++
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 334577888887677788999999999999886542111111133334444444455666766666554
No 355
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=64.78 E-value=66 Score=25.12 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=55.7
Q ss_pred ChHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHh
Q 013228 294 LIGPLVNLLQN-AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP-LCDLLLC---ADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 294 ~~~~L~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~~~~~a~~~l~~l~~~ 366 (447)
.+..|..-+.+ .++.++..|+..|-.+..++.......+...++++. |+.++.. .+..++..++..+......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 44555565663 588899999999999999988888888888899987 8998864 2347888887777776543
No 356
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=64.00 E-value=28 Score=27.23 Aligned_cols=47 Identities=26% Similarity=0.224 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228 308 DIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
--+..|...|+.|...- -+..|+.+|.+.++.+...|..+|.+.+-.
T Consensus 78 Is~~~Av~LLGtM~GGY------------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 78 ISPAEAVELLGTMLGGY------------NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp B-HHHHHHHHTTS-SST------------THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred cCHHHHHHHHhhccCCC------------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 34566777777776542 278889999988888899999888887643
No 357
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=63.82 E-value=9.8 Score=27.84 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHH
Q 013228 312 WAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355 (447)
Q Consensus 312 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~ 355 (447)
..+..+..++. .|+....|++.|++..|+.+|.+.+.++...
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 45566777777 5688899999999999999999998876543
No 358
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=63.66 E-value=49 Score=25.95 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=49.8
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHH
Q 013228 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCII 247 (447)
Q Consensus 168 l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 247 (447)
...++.+|+.+...-....+..|.|=..-..+.. .-++.+++..+..-=.....--+..|+..|+.+..+..
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~A-A~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------- 95 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEA-AYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------- 95 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HH-HHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChH-HHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-------
Confidence 4456667766554444445555555442222221 23344444443332222222235567777776665443
Q ss_pred hcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 248 NCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 248 ~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
+..|+++|.+. +..+...|+.+|.+-..
T Consensus 96 ----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 45789999888 88999999999987654
No 359
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=62.71 E-value=61 Score=24.06 Aligned_cols=69 Identities=6% Similarity=-0.034 Sum_probs=51.3
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhh-----c-cCCCHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDL-----L-LCADPEIVTVFLKGLEK 362 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l-----l-~~~~~~~~~~a~~~l~~ 362 (447)
++..|..-+.+.++.++..|+..|-.+..++.+.....+....++..++.. . ...+..++..+...+..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 455666777788999999999999999999988888887777666666543 1 12356788877766654
No 360
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=62.52 E-value=1.9e+02 Score=29.62 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=58.5
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ 242 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 242 (447)
..++..|..+-.++=+.++..++..+.++..+.+++-. .++..++.-|.+++..+...|-..|.+|.+.+|.-
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc
Confidence 44556666666677789999999999999988877644 45788899999999999999999999998877743
No 361
>PRK09169 hypothetical protein; Validated
Probab=62.33 E-value=3.2e+02 Score=32.18 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=13.1
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCChhh
Q 013228 49 MREDYPQLQFEAAWALKNIVSGTSED 74 (447)
Q Consensus 49 ~~~~~~~v~~~a~~~L~~l~~~~~~~ 74 (447)
+.++ ......++..|..-....+..
T Consensus 216 Kwp~-~~~cr~a~~~lA~rL~~~~~l 240 (2316)
T PRK09169 216 KWPD-SPRCRNAAERLAERLADEPGL 240 (2316)
T ss_pred cCCC-cHHHHHHHHHHHHHHhcChHH
Confidence 4555 455555666665554434443
No 362
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=62.24 E-value=1.1e+02 Score=26.88 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHhhcCChh-------HHHHHHhcCCHHHHHHHhcccc---chhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228 95 SDDIREQAVCALGNVAADSAR-------CRDLVLSEEALIPLLTQLNKHA---KLSMLRIATWTLSNFCAGKPKPIFDQV 164 (447)
Q Consensus 95 ~~~i~~~a~~~L~~l~~~~~~-------~~~~~~~~~~l~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (447)
++...+.++..|..|...... .|-.+.-...+|.++..+.+.. .......++..|..+|........
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~L--- 151 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNL--- 151 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccH---
Confidence 455666777788877743211 1222222234566666663332 123445666788888854322211
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 244 (447)
..++....+---.+..+....++..|+.-.. ++ .+...+..++.+|.++..-++..++.+|..+....+-...
T Consensus 152 a~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~ 224 (262)
T PF14225_consen 152 ARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP 224 (262)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC
Confidence 1122211111112334555556666654321 11 1224577889999988899999999999998865543322
Q ss_pred HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNIT 279 (447)
Q Consensus 245 ~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~ 279 (447)
...+++..+.+++.++ .-.+|..++-++.
T Consensus 225 --~~~dlispllrlL~t~----~~~eAL~VLd~~v 253 (262)
T PF14225_consen 225 --HGADLISPLLRLLQTD----LWMEALEVLDEIV 253 (262)
T ss_pred --cchHHHHHHHHHhCCc----cHHHHHHHHHHHH
Confidence 4446788888888776 3445655555443
No 363
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=61.91 E-value=42 Score=26.36 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=79.6
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC--hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHH
Q 013228 71 TSEDTKVVIDHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADS--ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATW 147 (447)
Q Consensus 71 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~ 147 (447)
+++.-+.+.+.+.+..+.+.+.. ....++.+.+..++-+...- +..-..+...+.+..++..-..-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45577788888999999999887 56778887887777665321 1122234556667777776555667888888888
Q ss_pred HHHHhcCCCCCCChhhH----h---hhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228 148 TLSNFCAGKPKPIFDQV----R---PALPALAQLVHSNDKEVMTDACRALFYL 193 (447)
Q Consensus 148 ~L~~l~~~~~~~~~~~~----~---~~l~~l~~ll~~~~~~v~~~al~~l~~l 193 (447)
.|..++..-........ . ++...-+++..++|.-++.++-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 88888754422211111 2 2333455667788888877766655554
No 364
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=61.73 E-value=1.5e+02 Score=28.39 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=61.2
Q ss_pred ChHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC---CCHHHH--HHHHHHHHHHHHhh
Q 013228 294 LIGPLVNLLQN-AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC---ADPEIV--TVFLKGLEKILKVG 367 (447)
Q Consensus 294 ~~~~L~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~--~~a~~~l~~l~~~~ 367 (447)
+|..|++-++. ++..++..++.+|..|..... ..+.--..+++..|+.++-. ..|++- ...-..+..+.+..
T Consensus 313 iIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~ 390 (441)
T PF12054_consen 313 IIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEE 390 (441)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhc
Confidence 56677777774 578999999999988865321 01111112356677777632 222211 11111222222211
Q ss_pred hhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHH
Q 013228 368 EAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVK 413 (447)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~ 413 (447)
........+......-...+.+-|+...|..|...-.+++.++.-.
T Consensus 391 ~~~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~ 436 (441)
T PF12054_consen 391 DKADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKLPK 436 (441)
T ss_pred ccccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhhhH
Confidence 1111000001112223456888999999999987777777665443
No 365
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.62 E-value=77 Score=29.38 Aligned_cols=114 Identities=20% Similarity=0.207 Sum_probs=80.9
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 013228 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI 205 (447)
Q Consensus 126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 205 (447)
+..++..+ .+.+..++..|+.-+..+....+.........+++.+..+..+.+..+|......+-.+............
T Consensus 60 lkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 56677777 77888999999998888876654544445577888888888888888988888877765533222111111
Q ss_pred HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 206 EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 206 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
-.=+++.+...+.+..+.++..++..+.-+....+
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 11245566666788889999999999998886553
No 366
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=61.09 E-value=1.4e+02 Score=27.58 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=65.3
Q ss_pred HHHHHHHhcc-----cc-chhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc----------cCChhHHHHHHHH
Q 013228 126 LIPLLTQLNK-----HA-KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH----------SNDKEVMTDACRA 189 (447)
Q Consensus 126 l~~l~~~l~~-----~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------~~~~~v~~~al~~ 189 (447)
+|.++..+.. .. +.......+.++..|..+..-........++|.++.++- .....+|..|...
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~l 291 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARL 291 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHH
Confidence 5555555531 11 566777788888888888755445556788898887663 1235889999999
Q ss_pred HHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc--hhHhHHHHHHHHh
Q 013228 190 LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP--SVLTRALQTVVNI 235 (447)
Q Consensus 190 l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~--~v~~~a~~~l~~l 235 (447)
+..++........ -+...++..+.+.+.++.. ....-|+..|..+
T Consensus 292 l~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 292 LAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9988854332211 2334455566666654332 2244455555444
No 367
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=59.56 E-value=66 Score=25.11 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=46.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
..-..+..+|.++++++|..|+.++...-. + .+.. .-+.|-+++ . +...+.. +..+. +.........
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~----~l~p--Y~d~L~~Ll-d--d~~frde-L~~f~-~~~~~~~I~~ 83 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD--P----YLTP--YKDNLENLL-D--DKTFRDE-LTTFN-LSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H----HHHh--HHHHHHHHc-C--cchHHHH-HHhhc-ccCCcCCCCH
Confidence 455678889999999999999999988521 1 1111 113344444 2 2233333 22221 2222223444
Q ss_pred hhHhhhHHHHHHhhc
Q 013228 162 DQVRPALPALAQLVH 176 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~ 176 (447)
.....++|.++++|-
T Consensus 84 ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 84 EHRPELMPVVLRILY 98 (141)
T ss_pred HHHhHHHHHHHHHHH
Confidence 555788888888764
No 368
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=59.17 E-value=1.9e+02 Score=28.62 Aligned_cols=106 Identities=7% Similarity=-0.024 Sum_probs=73.6
Q ss_pred HHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH--HHHHHH
Q 013228 213 LVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE--HIQAVI 290 (447)
Q Consensus 213 L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~--~~~~l~ 290 (447)
++.-..+-++.+|..+...++-.+...|.. ++.-.++...--.|.+. +..+|.....++-.++...|. .+..++
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn-~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDN-HEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccc-hHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 444455677888888888888877766643 44444677777778888 899999999999999985443 233333
Q ss_pred HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 291 DAGLIGPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 291 ~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
+. +...+++++..+..-||..+...+..+...
T Consensus 356 eR-Fk~rILE~~r~D~d~VRi~sik~l~~lr~l 387 (740)
T COG5537 356 ER-FKDRILEFLRTDSDCVRICSIKSLCYLRIL 387 (740)
T ss_pred HH-HHHHHHHHHhhccchhhHHHHHHHHHHHHh
Confidence 33 666777777765444887777777666543
No 369
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=58.95 E-value=12 Score=29.38 Aligned_cols=125 Identities=9% Similarity=0.112 Sum_probs=83.3
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHH
Q 013228 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA--GNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAAR 315 (447)
Q Consensus 239 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~ 315 (447)
++...+.+.+.+.+..+.++++......++.....+++-+.. .++...-.+...+.+..++..-- -.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 345677788889999999999885477888888877776654 34444555666677776666432 357788888888
Q ss_pred HHHHhcCCCCHHHHHHHHH--cCChHHH---HhhccCCCHHHHHHHHHHHHHH
Q 013228 316 AISNATFGGTHEQIKYLVR--EGCIKPL---CDLLLCADPEIVTVFLKGLEKI 363 (447)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~--~~~l~~L---~~ll~~~~~~~~~~a~~~l~~l 363 (447)
.|..++..-+++....+.. .+-.|.+ +.+..++|+-++.++-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888887655555555443 2344444 4455677776666665555444
No 370
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=58.78 E-value=2.3e+02 Score=29.42 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=67.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 013228 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDI 375 (447)
Q Consensus 296 ~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 375 (447)
..+...+.+++..+....+.++.++..-......+ ...-++.-..-.+..-..+......+|.++......
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~------ 514 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS------ 514 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------
Confidence 34444555667777777777777776532110000 000111111111111123445555556666555333
Q ss_pred hcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228 376 AIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGR 422 (447)
Q Consensus 376 ~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (447)
.....+.+.+....+-.+.-|++++++..|..++...|+.+
T Consensus 515 ------~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 515 ------HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred ------HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 35788888899999999999999999999999999998643
No 371
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=58.26 E-value=84 Score=30.14 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL 90 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 90 (447)
..|..|+.+|..+++.-.......+.. +.|+.+|+++. ..=|..++-++...+................+.|...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 568889999999988742333332221 26888999988 5667777778887776332221111011234566666
Q ss_pred hCC
Q 013228 91 LAS 93 (447)
Q Consensus 91 l~~ 93 (447)
|.+
T Consensus 177 L~~ 179 (441)
T PF12054_consen 177 LEN 179 (441)
T ss_pred HcC
Confidence 664
No 372
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=56.85 E-value=45 Score=28.00 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=43.8
Q ss_pred HHHHHhcCChHHHHHhhccCCc-----------------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 013228 243 TQCIINCGALPYLLGLLIHNHK-----------------KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA 305 (447)
Q Consensus 243 ~~~~~~~~~l~~l~~~l~~~~~-----------------~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~ 305 (447)
.+.+.+.|++..++.+|+.+.+ ..+-..+...|..++.+++++...+.+. ++.+...+...
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~ 113 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL 113 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh
Confidence 3445566677777776653211 3456778888999999888887777763 33333333322
Q ss_pred chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 306 EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 306 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
....-..+..++..+..+ +++....+.+. .++.+++++.....+ ..-+..|..++...+
T Consensus 114 ~~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 114 QIGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp CH-TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred hccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhcccCC
Confidence 111113456667777665 55555555444 388888888774432 235666777766543
No 373
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=56.54 E-value=1.1e+02 Score=24.83 Aligned_cols=154 Identities=11% Similarity=0.124 Sum_probs=83.6
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHH
Q 013228 253 PYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYL 332 (447)
Q Consensus 253 ~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 332 (447)
|.|+..|... .++......|+.+.+.-...+ .....|.-+.|.+++.+.+..-...|......+...-..+....+
T Consensus 6 plLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 6 PLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred HHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHH
Confidence 5566677543 233334444444433211111 113566777788877764444447888888888743345555555
Q ss_pred HHcCChHHHHhhccCCC-HHHHH--HHH-HHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCH-HH
Q 013228 333 VREGCIKPLCDLLLCAD-PEIVT--VFL-KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDND-EI 407 (447)
Q Consensus 333 ~~~~~l~~L~~ll~~~~-~~~~~--~a~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~-~v 407 (447)
.+. .++.+.+.|.++. .+... .|+ .++...+..-+.... ...+...+. -.++.+.++.+.+.+ ..
T Consensus 82 ~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~-------~~~vk~L~~--~mv~Sv~elV~~g~E~~~ 151 (174)
T PF04510_consen 82 MEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMR-------VDLVKELLP--KMVKSVKELVERGMEVGF 151 (174)
T ss_pred HHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccH-------HHHHHHHHH--HHHHHHHHHHHcccHHHH
Confidence 554 6666666665542 23322 222 333333333332211 111223332 367888889999988 78
Q ss_pred HHHHHHHHHHhcC
Q 013228 408 HEKSVKILETYWC 420 (447)
Q Consensus 408 ~~~a~~~l~~~~~ 420 (447)
-.+|-+-++++..
T Consensus 152 l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 152 LRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887654
No 374
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=54.53 E-value=69 Score=29.30 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228 55 QLQFEAAWALKNIVSGTSEDTKVVIDHG--AVPIFVKLLASP---SDDIREQAVCALGNVAADSARCRDLV 120 (447)
Q Consensus 55 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~~---~~~i~~~a~~~L~~l~~~~~~~~~~~ 120 (447)
.+|..|+.++..+.. .+.....++..+ ++..|+.+++.+ ...++..|+.+|..++.+...+.+.+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344455555555554 667777888777 999999999763 57899999999999998766554443
No 375
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=54.23 E-value=2.6e+02 Score=28.70 Aligned_cols=144 Identities=10% Similarity=0.004 Sum_probs=75.3
Q ss_pred hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228 223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302 (447)
Q Consensus 223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l 302 (447)
.....+++|+-.+....-.....+-....+-.+...+... .+.+...++..++.+|.-..
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr-~pnmm~dvvkllsalciV~e------------------- 266 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPR-EPNMMTDVVKLLSALCIVGE------------------- 266 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCcc-CccHHHHHHHHHHHHheeeh-------------------
Confidence 3455566666665543221111122223344555556555 66777777777777766332
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 013228 303 QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVN 381 (447)
Q Consensus 303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 381 (447)
....+....++..++..... .. ..+|++.|... +..+...+...+..+........-. -
T Consensus 267 ----e~~~ekvl~aiT~~ae~~~v---eR------F~piv~gl~~~e~~~l~vacmq~INal~t~p~dldfR-------l 326 (1102)
T KOG1924|consen 267 ----ENGLEKVLEAITTIAEAKPV---ER------FRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDFR-------L 326 (1102)
T ss_pred ----hhHHHHHHHHHHHHHhhcch---hh------hhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhHH-------H
Confidence 22333444455555443211 11 34455555554 4556666666555555443332211 1
Q ss_pred HHHHHHHHhchHHHHHHHhcCCCHH
Q 013228 382 QYAQLVEEAEGLEKIENLRSHDNDE 406 (447)
Q Consensus 382 ~~~~~i~~~~~~~~l~~l~~~~~~~ 406 (447)
.++..+.+.|.-+.|.++....|+.
T Consensus 327 hlR~E~mr~gL~~~l~~l~~i~n~~ 351 (1102)
T KOG1924|consen 327 HLRSEFMRDGLHKYLPDLTEINNDI 351 (1102)
T ss_pred HHHHHHHHHhHHHHHHHhhhhccHH
Confidence 1456677788888888887776555
No 376
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=51.91 E-value=2.5e+02 Score=27.84 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh--hHhhhHHHH
Q 013228 94 PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD--QVRPALPAL 171 (447)
Q Consensus 94 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~l 171 (447)
-++.+|-.|...|+--+..-|. .+....++.+.--.| .+.+..++.....++..|+...|..... ........+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4677777777777666554443 333434555555555 6677889999999999999887665522 225556677
Q ss_pred HHhhccCChhHHHHHHHHHHHhc
Q 013228 172 AQLVHSNDKEVMTDACRALFYLS 194 (447)
Q Consensus 172 ~~ll~~~~~~v~~~al~~l~~l~ 194 (447)
+.++..+..-|+..++..+..+.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHH
Confidence 78877665558888887776655
No 377
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.69 E-value=52 Score=34.20 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=66.4
Q ss_pred HhhhHHHHHHhhccCChhHHHHHHHHHHHhc----cCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228 164 VRPALPALAQLVHSNDKEVMTDACRALFYLS----EGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239 (447)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~----~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 239 (447)
...++....++|.+.+-.+|..++.++..-. .+.+.... ++ ...-+.++..+..+++-+...|+.++.+++...
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 3566777788999999999999998886433 23322221 22 245688889999999999999999999999877
Q ss_pred hhhHHHHHhcCChHHHHHhhcc
Q 013228 240 DFQTQCIINCGALPYLLGLLIH 261 (447)
Q Consensus 240 ~~~~~~~~~~~~l~~l~~~l~~ 261 (447)
.+....=+-..++|.+-.++.+
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6543322223566666655543
No 378
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=51.31 E-value=2e+02 Score=26.42 Aligned_cols=193 Identities=10% Similarity=0.027 Sum_probs=96.4
Q ss_pred CCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC--CcHHH
Q 013228 124 EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG--TNDEI 201 (447)
Q Consensus 124 ~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~--~~~~~ 201 (447)
.++..+..++.+..++......+.++..=+... .......++..+.+-+.+..+.+|..-+..++..... +...
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~- 97 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS- 97 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH-
Confidence 346677777767777777777666655433221 1122256677777888888877888877777777641 1111
Q ss_pred HHHHHhCcHHHHHHhc----CCCCchhH---hHHHHHHHHhhcCChhhHHH-------HH-hc--C--ChHHHHHhhccC
Q 013228 202 QAVIEAGVCPRLVELL----GHPSPSVL---TRALQTVVNIAAGDDFQTQC-------II-NC--G--ALPYLLGLLIHN 262 (447)
Q Consensus 202 ~~~~~~~~~~~L~~lL----~~~~~~v~---~~a~~~l~~l~~~~~~~~~~-------~~-~~--~--~l~~l~~~l~~~ 262 (447)
..+ -..+++.|...+ .++-.... ..++.++..+.......... +. +. . .-+.+..-+ .
T Consensus 98 ~~~-~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 98 LKF-AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHH-HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 111 123566666666 33322211 11222222111111111000 00 00 0 001122211 2
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHHHHHHhcCCC
Q 013228 263 HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAARAISNATFGG 324 (447)
Q Consensus 263 ~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~~ 324 (447)
+.+-....+.++..+..+.......-....+-..++.++-+. .+++|+.|..++..+....
T Consensus 175 -~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 175 -SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred -CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 333344445555555443222111111223566677777777 8999999999999988763
No 379
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=51.27 E-value=1.7e+02 Score=30.59 Aligned_cols=62 Identities=24% Similarity=0.288 Sum_probs=48.3
Q ss_pred HHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhcCC-----CCHHHHHHHHHcCChHHHHhhc
Q 013228 284 EHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNATFG-----GTHEQIKYLVREGCIKPLCDLL 345 (447)
Q Consensus 284 ~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~l~~L~~ll 345 (447)
..++.+-+...++.+++++. +.+++++..|...|+.++.. +.....+.|.....++.|+..+
T Consensus 181 ~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~m 248 (838)
T KOG2073|consen 181 DVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIM 248 (838)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHH
Confidence 45566666779999999998 44789999999999999887 5556677777777788776644
No 380
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.18 E-value=3.9e+02 Score=29.79 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=66.1
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 013228 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAV 289 (447)
Q Consensus 210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 289 (447)
+..+++-|...++..+..|+..++.+....+......+-........++..+. +..+|...-.++..+...-...+...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45667777788999999999999999865442222111111223344555666 99999999888888876433333333
Q ss_pred HHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 290 IDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 290 ~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
.+. +++...-.-.+.+..+...|...+.....
T Consensus 122 LK~-li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 122 LKS-LIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHh-hhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 332 33333222223455666666666655544
No 381
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.87 E-value=3.2e+02 Score=28.38 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCC----hhhHHHHHhC-
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGT----SEDTKVVIDH- 81 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~- 81 (447)
+||.++..|=++|...-.. .|..-.+++++..++ ++.+|..|+-.+.|.++.+ ++....+.+.
T Consensus 17 pdps~rk~aEr~L~~~e~q-----------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~ 85 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ-----------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEED 85 (960)
T ss_pred CCCccCchHHHHHHHhccC-----------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhH
Confidence 3455555555555444322 345556777776654 4788999999999988721 1111122221
Q ss_pred -CCh-HHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 013228 82 -GAV-PIFVKLLASPSDDIREQAVCALGNVAADS 113 (447)
Q Consensus 82 -~~i-~~L~~ll~~~~~~i~~~a~~~L~~l~~~~ 113 (447)
..+ ..++.++-+....++.+-..+|+-++..+
T Consensus 86 ~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~D 119 (960)
T KOG1992|consen 86 REQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRD 119 (960)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccc
Confidence 122 34556667777899999999999988544
No 382
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=49.58 E-value=1.4e+02 Score=24.07 Aligned_cols=73 Identities=15% Similarity=0.081 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
..+.+...+..+..-.|..+....+.++.+..... .........++|.+..+|.+..+.-...++..+..+..
T Consensus 26 ~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~-~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 26 RRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPE-KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred hcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcC-cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 34445566666656677788887777777555443 44445558899999999999999988889988887764
No 383
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=47.82 E-value=2.2e+02 Score=25.94 Aligned_cols=157 Identities=9% Similarity=0.082 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------ccchhHHHHHHHHHHHhcCCCCCCChhhHhhhH
Q 013228 97 DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------HAKLSMLRIATWTLSNFCAGKPKPIFDQVRPAL 168 (447)
Q Consensus 97 ~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 168 (447)
.+++..+..+.......+.... .....+++++..+.. ..++++..-...++..+-..-..........++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4556666666666654443222 234567887774421 124566666666666665544444455557788
Q ss_pred HHHHHhhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHH---hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC----
Q 013228 169 PALAQLVHSN---DKEVMTDACRALFYLSEGTNDEIQAVIE---AGVCPRLVELLGHPSPSVLTRALQTVVNIAAG---- 238 (447)
Q Consensus 169 ~~l~~ll~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~---- 238 (447)
...+.++..+ -|+.+..-...+..+........-.+-. ..++..++..+++++.++...++.++..+...
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888753 3788877777777666542221111100 13466777778999999999999988887642
Q ss_pred ChhhHHHHHhcCChHHH
Q 013228 239 DDFQTQCIINCGALPYL 255 (447)
Q Consensus 239 ~~~~~~~~~~~~~l~~l 255 (447)
+++....+.+.-.++.+
T Consensus 200 ~~~~~~~F~~~y~~~il 216 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDIL 216 (319)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 33344445544333333
No 384
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=47.42 E-value=1.1e+02 Score=22.48 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=51.9
Q ss_pred CChHHHHHhhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CchhHHHHHHHHHHHhcCCC
Q 013228 250 GALPYLLGLLIHNH---KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN--AEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 250 ~~l~~l~~~l~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~aL~~l~~~~ 324 (447)
|++..+...+.+.+ +..-|+.+..++..+..-....+ ..+.|.++.+|.+ +.++++..|..+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-----~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-----SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 45555666665542 34558888888887765322222 1256777777775 46789999999998888766
Q ss_pred CHHHHHHHHH
Q 013228 325 THEQIKYLVR 334 (447)
Q Consensus 325 ~~~~~~~l~~ 334 (447)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666655544
No 385
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=46.98 E-value=2.2e+02 Score=25.68 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=83.7
Q ss_pred HHHHhCcHHHHHHhcCC-----------------------CCchhHhHHHHHHHHhhcCChhhHHH--------------
Q 013228 203 AVIEAGVCPRLVELLGH-----------------------PSPSVLTRALQTVVNIAAGDDFQTQC-------------- 245 (447)
Q Consensus 203 ~~~~~~~~~~L~~lL~~-----------------------~~~~v~~~a~~~l~~l~~~~~~~~~~-------------- 245 (447)
.+.+.|+++.|-.+... ++..++.+-++.+.+++.........
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 45666777777666532 11136778889999888744222110
Q ss_pred -------HHhcCChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHH--HHHHHHHcCChHHHHHHHhcC---chhHHHH
Q 013228 246 -------IINCGALPYLLGLLIH-NHKKSIKTDACWTISNITAGNSE--HIQAVIDAGLIGPLVNLLQNA---EFDIKNW 312 (447)
Q Consensus 246 -------~~~~~~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~--~~~~l~~~~~~~~L~~~l~~~---~~~v~~~ 312 (447)
--+.|.+..++..+.. +.+...|-..+.++-.+.++... ....+.+.|+++.++..+-++ +..+.+.
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 0124667777776653 23667788888888888885433 344677899999999987754 3468889
Q ss_pred HHHHHHHhcCCCCHHHHH
Q 013228 313 AARAISNATFGGTHEQIK 330 (447)
Q Consensus 313 a~~aL~~l~~~~~~~~~~ 330 (447)
....|+.+... +.....
T Consensus 164 ~FDLLGELiK~-n~~~f~ 180 (303)
T PF12463_consen 164 NFDLLGELIKF-NRDAFQ 180 (303)
T ss_pred HHHHHHHHHCC-CHHHHH
Confidence 99999999887 444433
No 386
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.86 E-value=4.5e+02 Score=29.31 Aligned_cols=102 Identities=11% Similarity=0.238 Sum_probs=60.0
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHH----HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVP----RFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKV 77 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~----~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 77 (447)
++.|...|+.++..|+..|..+....+.+.. .|++| ...++..+++ ..||...-.++..+...-......
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~-----~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEEL-----KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHH-----hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4567888999999999999999876422111 22333 2334556677 899999999999987622111112
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 013228 78 VIDHGAVPIFVKLLASPSDDIREQAVCALGNVA 110 (447)
Q Consensus 78 ~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~ 110 (447)
..+ ..++...-.-.+.+..+...|...+....
T Consensus 121 ~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 121 FLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGF 152 (1312)
T ss_pred HHH-hhhhhhhheecccchHHHHHHHHHHHhhc
Confidence 222 22333333333445556555555555543
No 387
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.70 E-value=1.2e+02 Score=29.23 Aligned_cols=71 Identities=7% Similarity=0.002 Sum_probs=55.8
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA--DPEIVTVFLKGLEKIL 364 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~a~~~l~~l~ 364 (447)
++..|.+.+.+..+.++..|+..|-.+..++....-..+.+.++++-++.+.+.. +..++..++..|..--
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 4566777777788899999999888888888777777888899999988888765 5578888777665543
No 388
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=44.44 E-value=1.7e+02 Score=23.55 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-hhccCC-chhHHHHHHHHHHHHh
Q 013228 202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLG-LLIHNH-KKSIKTDACWTISNIT 279 (447)
Q Consensus 202 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~-~l~~~~-~~~v~~~a~~~l~nl~ 279 (447)
..+++..+.+.+.+.+.+++..+...+++++..+........+.=++ -++..++. ++.++. ...-|..+..++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 34566677888888887777888899999999988543322221111 13344444 666542 2456777888999998
Q ss_pred cCCH
Q 013228 280 AGNS 283 (447)
Q Consensus 280 ~~~~ 283 (447)
....
T Consensus 146 ~~p~ 149 (168)
T PF12783_consen 146 KDPQ 149 (168)
T ss_pred hChh
Confidence 7543
No 389
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=44.27 E-value=64 Score=24.09 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=30.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 120 (447)
+++.|+.-|.++++++...|+.+|...|.+. .+-+.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~ 45 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYL 45 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHH
Confidence 4788999999999999999999999999776 343433
No 390
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=44.23 E-value=75 Score=24.58 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=43.5
Q ss_pred hhhHHHHHHhhccCC----hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228 165 RPALPALAQLVHSND----KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV 232 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~----~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 232 (447)
..+++.+.+.+.... ..+...++.++......-+. ..+.+.++++.+.+++.+ +..+..|+.+|
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~--~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPI--ELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H--HHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH--HHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 334555555554332 78889999999988864443 456677899999999944 45577777765
No 391
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=44.01 E-value=1.4e+02 Score=22.58 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=58.7
Q ss_pred CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc---cCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 013228 305 AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL---LCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVN 381 (447)
Q Consensus 305 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 381 (447)
++...-...+.-|...+... ..... +++.|..-| +..++.....++..|..|+..+...
T Consensus 15 d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~----------- 76 (125)
T PF01417_consen 15 DPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER----------- 76 (125)
T ss_dssp SSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH-----------
T ss_pred CCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH-----------
Confidence 34445556666777777753 33333 356666666 5566788889999999999987664
Q ss_pred HHHHHHH-HhchHHHHHHHhc--C----CCHHHHHHHHHHHHHhcCC
Q 013228 382 QYAQLVE-EAEGLEKIENLRS--H----DNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 382 ~~~~~i~-~~~~~~~l~~l~~--~----~~~~v~~~a~~~l~~~~~~ 421 (447)
+...+. ....++.+.++.. . ....|+++|..+++-+.++
T Consensus 77 -~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 77 -FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp -HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred -HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 344443 2344455554433 1 1234899999999876553
No 392
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=43.69 E-value=2.8e+02 Score=25.93 Aligned_cols=250 Identities=12% Similarity=0.111 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh
Q 013228 96 DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV 175 (447)
Q Consensus 96 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll 175 (447)
..-++-|...+.+.-.+-|... ..++..-+.+. .+.|..+++.|..-|-.+|.++ ....+.+.|+++|
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la-----~~a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLA-----DEAIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQLL 105 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhh-----hHHHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHHH
Confidence 4445556666666654444332 22355555555 6667788888888888888763 1233344444444
Q ss_pred c------------cCChhHHHHHHHHHHHhc-cCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC---
Q 013228 176 H------------SNDKEVMTDACRALFYLS-EGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD--- 239 (447)
Q Consensus 176 ~------------~~~~~v~~~al~~l~~l~-~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~--- 239 (447)
+ ..|..+++.++..|..-. .-..+....-++..+++-+...|.+-..+--...+..|+++....
T Consensus 106 nk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~ 185 (460)
T KOG2213|consen 106 NKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKA 185 (460)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCC
Confidence 3 236666766666554322 222333223334445555566665544444445556666664332
Q ss_pred -hhhHHHHHhcCChHHHHHh--hccCCchhHHHHHHHHHHH----HhcCC--HHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228 240 -DFQTQCIINCGALPYLLGL--LIHNHKKSIKTDACWTISN----ITAGN--SEHIQAVIDAGLIGPLVNLLQNAEFDIK 310 (447)
Q Consensus 240 -~~~~~~~~~~~~l~~l~~~--l~~~~~~~v~~~a~~~l~n----l~~~~--~~~~~~l~~~~~~~~L~~~l~~~~~~v~ 310 (447)
+.....+.+ ..+-+-.+ +.-. +......-..|+.. ++.+. ..... .+...++|.- ......+.+
T Consensus 186 ~~a~lqeLa~--~~e~~a~ldaf~~s-D~d~VdRfisCl~~AvPfFargapSskf~~-y~n~~~ip~~---fdkl~e~rk 258 (460)
T KOG2213|consen 186 GEARLQELAE--EQEGLADLDAFNVS-DADYVDRFISCLLMAVPFFARGAPSSKFVE-YLNKHIIPHH---FDKLTEERK 258 (460)
T ss_pred CHHHHHHHHH--HHhhhhccCcccCC-ChHHHHHHHHHHHHhhhhhhcCCchhHHHH-HHHhhhcccc---cccchHHHH
Confidence 222222221 01111111 2222 44444433333332 22222 12222 2233344430 111235677
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHH
Q 013228 311 NWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA--DPEIVTVFLKGLEKILK 365 (447)
Q Consensus 311 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~a~~~l~~l~~ 365 (447)
...+.+|..|+...+.+....++. .+++.|...+.-. -++....-++++.+++.
T Consensus 259 L~lLK~lAEMss~ttaq~a~q~Lp-si~elLk~yMpa~kt~ee~~fsyvEClly~~h 314 (460)
T KOG2213|consen 259 LDLLKALAEMSSYTTAQAARQMLP-SIVELLKEYMPAPKTGEEMQFSYVECLLYALH 314 (460)
T ss_pred HHHHHHHHHhCccchHHHHHHHHH-HHHHHHHHhcccCCccHHHHHHHHHHHHHHHH
Confidence 888889999988765555444322 1333333333322 23444445555555544
No 393
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=43.04 E-value=3.3e+02 Score=26.55 Aligned_cols=227 Identities=14% Similarity=0.111 Sum_probs=119.1
Q ss_pred CHHHHHHHhccccchhHHHHHHHHHHHhcCCC-----------CCCChhhHhhhHHHHHHhhc----cCC----hhHHHH
Q 013228 125 ALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-----------PKPIFDQVRPALPALAQLVH----SND----KEVMTD 185 (447)
Q Consensus 125 ~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-----------~~~~~~~~~~~l~~l~~ll~----~~~----~~v~~~ 185 (447)
++..+.+.+..+....++.++.|.|.++--.. ++....-...++...+.++- .+. +.....
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 57777777766677888999999998874221 11111112556666666653 222 344444
Q ss_pred HHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC
Q 013228 186 ACRALFYLSE---GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN 262 (447)
Q Consensus 186 al~~l~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 262 (447)
++..+..... .++-+-. -++..|+++ +-.++++..++.+...=+..+. ....++..=+.|.++.-++
T Consensus 178 vl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq-sAa~fLg~WlsPpli~sLs-- 247 (589)
T PF11229_consen 178 VLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ-SAAMFLGSWLSPPLIHSLS-- 247 (589)
T ss_pred HHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHHHHHHHHHHhccccc-cHHHHHHhhcCcchhhhhh--
Confidence 5555544332 2222222 123344443 2346677766655443333332 3344555445555555553
Q ss_pred CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHH--HHHHHcCChH
Q 013228 263 HKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI--KYLVREGCIK 339 (447)
Q Consensus 263 ~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~--~~l~~~~~l~ 339 (447)
...+......+.-... -+++.++.+++.-++..+-..-.-.++++...+...|..-....+|.+- ..+. ...+
T Consensus 248 --~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc--~tte 323 (589)
T PF11229_consen 248 --VNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLC--ETTE 323 (589)
T ss_pred --HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHH--HHHH
Confidence 3455555555555554 3556667666643333332222235678888888888876665454332 2222 3566
Q ss_pred HHHhhccC----CCHHHHHHHHHHHHHHHH
Q 013228 340 PLCDLLLC----ADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 340 ~L~~ll~~----~~~~~~~~a~~~l~~l~~ 365 (447)
.+.+++-+ .+-++.....+||..+..
T Consensus 324 kIF~lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 324 KIFDLLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred HHHHhCcccccHHHHHHHHHHHHHHhhcCH
Confidence 66666633 233455555666655544
No 394
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=42.06 E-value=86 Score=26.30 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=53.7
Q ss_pred CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 013228 208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287 (447)
Q Consensus 208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~ 287 (447)
...+.+...+.++++-+++.++.++....... ... ..+..+...+.++ +..++....|+|..++..+++...
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~--~~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRKE--DFD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC--HHH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc--CHH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence 45677888888888888888876665554431 111 2344555566777 899999999999999998888776
Q ss_pred HHHHc
Q 013228 288 AVIDA 292 (447)
Q Consensus 288 ~l~~~ 292 (447)
.+++.
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 395
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.86 E-value=2.1e+02 Score=23.94 Aligned_cols=141 Identities=15% Similarity=0.111 Sum_probs=83.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhcCChhHHHH
Q 013228 42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSDDIREQA-VCALGNVAADSARCRDL 119 (447)
Q Consensus 42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~i~~~a-~~~L~~l~~~~~~~~~~ 119 (447)
..+..+..++. .+.+..|+.++.......+. ..++.+-..+.. ++..+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34455666777 67788777777654431111 134455555554 566666655 44555543211
Q ss_pred HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH
Q 013228 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTND 199 (447)
Q Consensus 120 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~ 199 (447)
.....++.....+.+.-.++.++-++...... .....++..+...+.+++.-++....|+|..++...++
T Consensus 119 ----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 ----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 12333344343677777777776555444332 23355666667778888999999999999999988777
Q ss_pred HHHHHHHh
Q 013228 200 EIQAVIEA 207 (447)
Q Consensus 200 ~~~~~~~~ 207 (447)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 396
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=41.61 E-value=2.5e+02 Score=24.78 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHHHHhcCC----------------HHHHHHHHHcCChHHHHHHHhcC-chhHHHHHHHHHHHhcCCCCH
Q 013228 264 KKSIKTDACWTISNITAGN----------------SEHIQAVIDAGLIGPLVNLLQNA-EFDIKNWAARAISNATFGGTH 326 (447)
Q Consensus 264 ~~~v~~~a~~~l~nl~~~~----------------~~~~~~l~~~~~~~~L~~~l~~~-~~~v~~~a~~aL~~l~~~~~~ 326 (447)
+..+.......+.|+..-. ...+..+.+.|+...|+.+.++. ..+.....+..+..+....++
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 4455566677777777521 11233445677777777777754 233334555555555554443
No 397
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.20 E-value=56 Score=19.15 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=20.6
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRAL 190 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l 190 (447)
..+...+..-+.++++.|+..++.++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 46677778888999999999887653
No 398
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=41.09 E-value=36 Score=30.51 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=56.0
Q ss_pred HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC-------------CHHHHHHHHHcCChHHHHhhccC--------C-
Q 013228 291 DAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG-------------THEQIKYLVREGCIKPLCDLLLC--------A- 348 (447)
Q Consensus 291 ~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~-------------~~~~~~~l~~~~~l~~L~~ll~~--------~- 348 (447)
+...+..+++-+...+...|..|+.+|..++.+. -..+...+.+.|+++.+..+|.. .
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~ 137 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDD 137 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccccc
Confidence 3446777888888889999999999999998854 12345667788999999998842 0
Q ss_pred -----------CHHHHHHHHHHHHHHHHhhhhh
Q 013228 349 -----------DPEIVTVFLKGLEKILKVGEAE 370 (447)
Q Consensus 349 -----------~~~~~~~a~~~l~~l~~~~~~~ 370 (447)
+.......+.+++-++......
T Consensus 138 ~~~~~~~~~~~~~~el~~~LTilY~~vev~r~~ 170 (293)
T PF07923_consen 138 QDSNLPAVSLADSTELRVLLTILYFMVEVARRD 170 (293)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 1123445667777776654443
No 399
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=40.86 E-value=3.6e+02 Score=26.46 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=85.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc----c---cchhHHHHHHHHHHHhcCCCC
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK----H---AKLSMLRIATWTLSNFCAGKP 157 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~----~---~~~~~~~~a~~~L~~l~~~~~ 157 (447)
..+.+.+.+.++..+..|+..|.. + +.... .++.++.++.. + .|.....+....++.|..+..
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---D-sGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---D-SGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---C-ccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 344454555667777666665543 2 11211 24555555532 2 456777888888899988875
Q ss_pred CCChhhHhhhHHHHHHhhcc----------CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CchhH
Q 013228 158 KPIFDQVRPALPALAQLVHS----------NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP--SPSVL 225 (447)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~----------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~ 225 (447)
..-..+...++|.++.++-+ ....+|.-+...+..++......... +...++..+.+.+.++ .....
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~ 358 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTH 358 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhh
Confidence 55555668888988876642 23567888888888888665544443 4556777777777654 33444
Q ss_pred hHHHHHHHHhh
Q 013228 226 TRALQTVVNIA 236 (447)
Q Consensus 226 ~~a~~~l~~l~ 236 (447)
.-++..|..+.
T Consensus 359 YGai~gL~~lg 369 (576)
T KOG2549|consen 359 YGAIAGLSELG 369 (576)
T ss_pred hhHHHHHHHhh
Confidence 44555554443
No 400
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=40.24 E-value=2.9e+02 Score=25.11 Aligned_cols=185 Identities=13% Similarity=0.081 Sum_probs=101.1
Q ss_pred cHHHHHHhcCC----CCchhHhHHHHHHHHhhcCChhhHHHHHhc-----------CChHHHHHhhc------cCCchhH
Q 013228 209 VCPRLVELLGH----PSPSVLTRALQTVVNIAAGDDFQTQCIINC-----------GALPYLLGLLI------HNHKKSI 267 (447)
Q Consensus 209 ~~~~L~~lL~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----------~~l~~l~~~l~------~~~~~~v 267 (447)
++..|+.++-. ....+|..|+.++.....++++.+..+++. ....-++..|- +. ++.-
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~ 113 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYR 113 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHH
Confidence 34444444422 246789999999999999888777777642 11222444444 22 4444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHc-------C-----ChHHHHHHHhc-----CchhHHHHHHHHHHHhcCCCCHHHHH
Q 013228 268 KTDACWTISNITAGNSEHIQAVIDA-------G-----LIGPLVNLLQN-----AEFDIKNWAARAISNATFGGTHEQIK 330 (447)
Q Consensus 268 ~~~a~~~l~nl~~~~~~~~~~l~~~-------~-----~~~~L~~~l~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~ 330 (447)
-..|+.++..+..++++.+..+.+- | .++.+..+|.. .++.++.--+..|+..... ++....
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~ 192 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHH
Confidence 4578888889888877766555421 1 35666665543 3566666666667766665 566666
Q ss_pred HHHHc-CChHHHHhhccC---CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHH-HHhchHHHHHHHh
Q 013228 331 YLVRE-GCIKPLCDLLLC---ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLV-EEAEGLEKIENLR 400 (447)
Q Consensus 331 ~l~~~-~~l~~L~~ll~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~l~~l~ 400 (447)
.|+.. ..+..|++.... .+.-++-.+.-.|.-...++.+..+. .-..+...+ .+.|.-..+.++.
T Consensus 193 ~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~~-----~R~~l~~ll~~riG~d~y~~kl~ 262 (312)
T PF04869_consen 193 DFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSPI-----PRATLHPLLTKRIGRDNYFSKLE 262 (312)
T ss_dssp HHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCCC------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCCc-----CHHHHHHHHHHhcCHHHHHHHHH
Confidence 66655 568888887533 33445555555566666655333211 112244455 3455544444553
No 401
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=39.89 E-value=62 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=31.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
+++.|++-|.+++ ++|...|+.+|...+.+. .+...++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999999 899999999999999854 55555544
No 402
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=38.50 E-value=96 Score=28.38 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=35.8
Q ss_pred CCchhhhhccC--CHHHHHHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHH
Q 013228 29 SAPTEEVIPFG--VVPRFVEFLMRED--YPQLQFEAAWALKNIVSGTSEDTK 76 (447)
Q Consensus 29 ~~~~~~~~~~~--~v~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 76 (447)
+.....+...+ ++..|+++++.++ ..++|..|+.+|..++.......+
T Consensus 253 ~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 253 SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 34455566555 9999999997654 368999999999999986554444
No 403
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=38.43 E-value=37 Score=17.79 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR 50 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~ 50 (447)
.++..|++.|.++-.. ..++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~~~------------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDE------------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCH------------hHHHHHHHHhcC
Confidence 4688888898887332 156677776654
No 404
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=38.02 E-value=1.1e+02 Score=19.61 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHhchHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 013228 383 YAQLVEEAEGLEKIENL-RSHDNDEIHEKSVKILETYWCGRVAGP 426 (447)
Q Consensus 383 ~~~~i~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~~~~~ 426 (447)
.++.+.+.|+.+.+..+ ...++++|......+..-+..++.+++
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~ 55 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEG 55 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 47889999999999988 445679999888888886665544433
No 405
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=35.73 E-value=1.9e+02 Score=21.66 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=43.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh-hCCCCHHH-HHHHHHHHHHhhcCC
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL-LASPSDDI-REQAVCALGNVAADS 113 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~i-~~~a~~~L~~l~~~~ 113 (447)
++|.+.+.|+....++.+..+..+++.++... ...+. .+..+++. +......- .+.++.+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-~L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-PLSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-CCcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 57888888884433899999999999998833 22222 23334432 22222222 578888888888443
No 406
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.91 E-value=61 Score=29.49 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHhh--ccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 013228 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLL--IHNHKKSIKTDACWTISNITAGNSEHIQAV 289 (447)
Q Consensus 228 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l--~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 289 (447)
..+.++++|...++..+.+.+.++++.++.-. .+. ++.+++....|+.++...+.++.+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 56789999988888888888889988876643 345 89999999999999988766654443
No 407
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=33.88 E-value=1.9e+02 Score=21.21 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=52.9
Q ss_pred CChHHHHHhhcc---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CchhHHHHHHHHHHHhcCCC
Q 013228 250 GALPYLLGLLIH---NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN--AEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 250 ~~l~~l~~~l~~---~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~aL~~l~~~~ 324 (447)
|++..+-..+.+ ..+...|+.+...+..+..-....+. .+.|.++..|.+ +.++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 344455555544 33677888898888888763333222 256677777774 45689999999999888776
Q ss_pred CHHHHHHHHH
Q 013228 325 THEQIKYLVR 334 (447)
Q Consensus 325 ~~~~~~~l~~ 334 (447)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666655543
No 408
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=33.29 E-value=70 Score=16.41 Aligned_cols=26 Identities=27% Similarity=0.366 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc
Q 013228 141 MLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH 176 (447)
Q Consensus 141 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~ 176 (447)
++..+.++|..+.. ...+|.|++.|+
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 46677777777754 445666666553
No 409
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=32.56 E-value=2.3e+02 Score=23.30 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=50.9
Q ss_pred HHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 013228 211 PRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI 290 (447)
Q Consensus 211 ~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~ 290 (447)
+.+...+.+++.-+++.+..++........ ... ..++.+-.++.++ +..++....|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKET-DFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcc-cHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 677788888888888888777766554311 111 1334455555556 899999999999999887766555554
Q ss_pred H
Q 013228 291 D 291 (447)
Q Consensus 291 ~ 291 (447)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 4
No 410
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=32.10 E-value=3.9e+02 Score=24.23 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=69.2
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh-HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 013228 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ-VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI 205 (447)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 205 (447)
..|.+.|...-...|-..|+.+...+...-....... ..-..+.+..++......|+...+..+-+..-.-+.... ..
T Consensus 57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~-p~ 135 (307)
T PF04118_consen 57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR-PC 135 (307)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH-HH
Confidence 3455555444455666777776666655431111111 133456777888888888888888877665533222222 23
Q ss_pred HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 206 EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 206 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
-.|++..++.-+.++..+....+...+-.+...
T Consensus 136 l~~li~slLpGLede~sE~~~~~~~ll~~l~~~ 168 (307)
T PF04118_consen 136 LKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA 168 (307)
T ss_pred HHHHHHHhccccccCCchHHHHHHHHHHHHHHh
Confidence 346777777778888888999998888887743
No 411
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.06 E-value=6.3e+02 Score=26.01 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=37.7
Q ss_pred ChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc
Q 013228 113 SARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH 176 (447)
Q Consensus 113 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~ 176 (447)
.|.+|..+...|++..++..+..+..-.....+..+|.+|.... .........-+..++++|+
T Consensus 364 ~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d-~lnmdldf~Slelmi~LL~ 426 (865)
T KOG2152|consen 364 MPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRD-KLNMDLDFLSLELMIHLLR 426 (865)
T ss_pred ChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhh-hhcccccchhHHHHHHHHh
Confidence 36689999999999999999965544444444555555555433 1112222333445556655
No 412
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=29.90 E-value=3.6e+02 Score=23.13 Aligned_cols=128 Identities=12% Similarity=0.133 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCch------------------hHHHHHHHHHHHhcCCCCH
Q 013228 265 KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEF------------------DIKNWAARAISNATFGGTH 326 (447)
Q Consensus 265 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~------------------~v~~~a~~aL~~l~~~~~~ 326 (447)
......+|..+..+... ++....+.+.++++.+.+.+..-++ .+...-...|+.++. ++
T Consensus 78 ~~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~--~~ 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS--TP 154 (226)
T ss_pred hHHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC--Ch
Confidence 44455666667777555 5767777788898888888764211 122333446677766 56
Q ss_pred HHHHHHHHcCChHHHHhhccCCCH-HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCH
Q 013228 327 EQIKYLVREGCIKPLCDLLLCADP-EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDND 405 (447)
Q Consensus 327 ~~~~~l~~~~~l~~L~~ll~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~ 405 (447)
...+.+.+.++...+..+....+. ++... ++.++ ++.. ....+.. |...+..+++
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~L-DY~~-----------~~~~R~i---------LsKaLt~~s~ 210 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSL-DYSV-----------DGHPRII---------LSKALTSGSE 210 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhC-CCCC-----------ccHHHHH---------HHHHHhcCCH
Confidence 778888889999999999887643 33322 22222 2211 1112333 3366788889
Q ss_pred HHHHHHHHHHHHhc
Q 013228 406 EIHEKSVKILETYW 419 (447)
Q Consensus 406 ~v~~~a~~~l~~~~ 419 (447)
.++..|.+.|..+.
T Consensus 211 ~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 211 SIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887764
No 413
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.25 E-value=1.1e+02 Score=18.19 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=22.0
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013228 390 AEGLEKIENLRSHDNDEIHEKSVKILET 417 (447)
Q Consensus 390 ~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 417 (447)
.|..+.|+.+...+++..+..|..++.+
T Consensus 16 e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 16 EGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4456667778888889999999988875
No 414
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=29.14 E-value=2.6e+02 Score=23.38 Aligned_cols=94 Identities=12% Similarity=0.197 Sum_probs=31.0
Q ss_pred hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228 223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302 (447)
Q Consensus 223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l 302 (447)
.+...+.+.|..++.++......+.+ .++.+...+... .......+..++..+..++++....+.+. .+..+++++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 46678899999999988877665554 233333333222 11222345667777777777766666555 377788877
Q ss_pred hcCchhHHHHHHHHHHHhcC
Q 013228 303 QNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 303 ~~~~~~v~~~a~~aL~~l~~ 322 (447)
..... ...-+..|..++.
T Consensus 152 ~~~gr--~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 152 RKHGR--QPRYLDFLSSLCV 169 (207)
T ss_dssp --------------------
T ss_pred HHcCC--ChHHHHHHhhhcc
Confidence 75221 1234445555554
No 415
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=29.02 E-value=3.3e+02 Score=22.46 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=51.3
Q ss_pred cCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHH
Q 013228 335 EGCIKPLCDLLLC---ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKS 411 (447)
Q Consensus 335 ~~~l~~L~~ll~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a 411 (447)
.+-...++..+.+ ...+....++..+..++...+....... ++..|...|..+.+..+...+++.+....
T Consensus 20 ~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~-------lr~e~~~~GL~~il~~l~~~~~~~L~~Qi 92 (197)
T PF06367_consen 20 RGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVH-------LRNEFERLGLLDILEKLRNLEDDDLQEQI 92 (197)
T ss_dssp S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHH-------HHHHHHHTTHHHHHHHHTTS--HHHHHHH
T ss_pred cccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHH-------HHHHHHHCCcHHHHHHHHhcchHHHHHHH
Confidence 3456777887774 4568888888889999887765543322 57888889999999999999888887654
Q ss_pred HHHHH
Q 013228 412 VKILE 416 (447)
Q Consensus 412 ~~~l~ 416 (447)
..-.+
T Consensus 93 ~~f~~ 97 (197)
T PF06367_consen 93 DIFEE 97 (197)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 416
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=28.31 E-value=1.6e+02 Score=21.67 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=43.7
Q ss_pred CCHHHHHHhhcCCC---CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 013228 39 GVVPRFVEFLMRED---YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAA 111 (447)
Q Consensus 39 ~~v~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~ 111 (447)
|++..+-+.+.+.+ +..-+..++.++..+..- ....+. .+.+.+...|++ ..++++..++.++..+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~---~g~~i~--~a~pQI~acL~saL~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKL---MGKHIS--SALPQIMACLQSALEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 45566666665443 346688888888887762 112221 345666666665 578899999988888763
No 417
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=28.28 E-value=1.4e+02 Score=17.94 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=20.5
Q ss_pred HHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228 212 RLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244 (447)
Q Consensus 212 ~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 244 (447)
.++++|..+++..+...+.+|+.+...++...+
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~ 43 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQ 43 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777788888888888877776544
No 418
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=28.22 E-value=2.7e+02 Score=31.48 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=71.1
Q ss_pred HhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCCh
Q 013228 173 QLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGAL 252 (447)
Q Consensus 173 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l 252 (447)
.++++.++.++.-+......+....+. ..+..++..|+..+-+++..-...|+.+|..++..++.....+ +..+
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l 515 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFL 515 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHH
Confidence 356788888888887777766655433 2334577888888866666556788999999987655432221 1122
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHH
Q 013228 253 PYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR 315 (447)
Q Consensus 253 ~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~ 315 (447)
..+++.+.+=....+| ....+++.++......... ++..+.-.+-..+.+.++..++..+-
T Consensus 516 ~giLD~l~~Ls~~qiR-~lf~il~~La~~~~~~~s~-i~del~ivIRKQLss~~~~~K~~GII 576 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIR-KLFDILCTLAFSDSSSSSS-IQDELHIVIRKQLSSSNPKYKRIGII 576 (1426)
T ss_dssp HGGGGGGGG--HHHHH-HHHHHHHHHHHHHSS---H-HHHHHHHHHHHHHT-SSHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHHHHhcCCcccchh-hHHHHHHHHHHhhcCCcHHHHHHhHH
Confidence 2333333332123333 3466666666421111111 22224444555677777777654443
No 419
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=28.00 E-value=6.5e+02 Score=25.53 Aligned_cols=164 Identities=11% Similarity=0.050 Sum_probs=84.3
Q ss_pred hccCChhHHHHHHHHHHHhccCCcHHHHHHH---HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCC
Q 013228 175 VHSNDKEVMTDACRALFYLSEGTNDEIQAVI---EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGA 251 (447)
Q Consensus 175 l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~---~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 251 (447)
+..-..+.+-.|+.+++-+..+......... ...++..++..+. .++.-+..++++|.|+..+ +...+.+...
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~-- 628 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR-- 628 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--
Confidence 3344566677777777777655443322111 1134445555554 5567788899999999876 4444433321
Q ss_pred hHHHHHhh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-----CchhHHHHHHHHHHHhcCC
Q 013228 252 LPYLLGLL---IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN-----AEFDIKNWAARAISNATFG 323 (447)
Q Consensus 252 l~~l~~~l---~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-----~~~~v~~~a~~aL~~l~~~ 323 (447)
++.+...+ ++..+..++...+....|++.. ..+.--+.+..+.+...+.. +|.+-....+.||++++..
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 22222222 2221455665555455555331 01111123455555555442 2344456677788888875
Q ss_pred CCHHHHHHHHHcCChHHHHhhccC
Q 013228 324 GTHEQIKYLVREGCIKPLCDLLLC 347 (447)
Q Consensus 324 ~~~~~~~~l~~~~~l~~L~~ll~~ 347 (447)
. .....+...--++.+..-+++
T Consensus 706 ~--~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 706 D--ASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred c--HHHHHHHHhcCHHHHHHHHHH
Confidence 3 334444444445555555543
No 420
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.52 E-value=1.3e+02 Score=23.51 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 384 AQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 384 ~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
..........+.+..++.+++++|++.|.+++-.|-.
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3444455556778889999999999999999988743
No 421
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.44 E-value=2.1e+02 Score=25.73 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=40.4
Q ss_pred CChHHHHHhhccCCchhHHHHHHHHHHHHhcCC-------H-------HHHHHHHHcCChHHHHHHHh
Q 013228 250 GALPYLLGLLIHNHKKSIKTDACWTISNITAGN-------S-------EHIQAVIDAGLIGPLVNLLQ 303 (447)
Q Consensus 250 ~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~-------~-------~~~~~l~~~~~~~~L~~~l~ 303 (447)
..+..+++-|.++ +...|..|+.+|..++.|. . .+...+.+.|+++.++.+|.
T Consensus 60 ~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4566788888888 8888999999999888642 1 23344567899999999887
No 422
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=26.04 E-value=1.3e+02 Score=28.95 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=48.9
Q ss_pred HHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNIT 279 (447)
Q Consensus 210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~ 279 (447)
...+-.+..+.+++++.++..++++++......+..+-....-..+++.+..+ .+++-+.++.++.-+.
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 34444455678899999999999999987665544333444556777888777 7777777777776654
No 423
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.62 E-value=1.4e+03 Score=28.78 Aligned_cols=176 Identities=10% Similarity=0.061 Sum_probs=86.8
Q ss_pred cCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHH-----HHhhccCChhHHHHHHHHHHHhccCC
Q 013228 123 EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPAL-----AQLVHSNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 123 ~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l-----~~ll~~~~~~v~~~al~~l~~l~~~~ 197 (447)
.+.+.+++..+ .+++..++..+...|.+++..............-..+ .+-++...-..+.--+.++.+.....
T Consensus 1125 ~~~~~~lv~eL-~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~ 1203 (3550)
T KOG0889|consen 1125 MNVFSPLVLEL-FNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG 1203 (3550)
T ss_pred HHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC
Confidence 35677777777 6777799999999999988765222222222211111 12222333334433333333333221
Q ss_pred c-------HHHHHHHHh---------CcHHHHHHhcCCC----CchhHhHHHHHHHHhhcCChhhHH--HHHhcCChHHH
Q 013228 198 N-------DEIQAVIEA---------GVCPRLVELLGHP----SPSVLTRALQTVVNIAAGDDFQTQ--CIINCGALPYL 255 (447)
Q Consensus 198 ~-------~~~~~~~~~---------~~~~~L~~lL~~~----~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~l 255 (447)
+ +........ ..+. +.+....+ ....|..+..+++......+.... .-...+++..+
T Consensus 1204 p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~ 1282 (3550)
T KOG0889|consen 1204 PCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVF 1282 (3550)
T ss_pred CcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHH
Confidence 1 111100000 0011 11222111 123466666666655544432211 11234677788
Q ss_pred HHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Q 013228 256 LGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNL 301 (447)
Q Consensus 256 ~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~ 301 (447)
.+.+.+. ..++...+..++.+........-...++.+.-|.|..+
T Consensus 1283 fk~l~~~-~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1283 FKSLYKR-SSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHHHcCC-hHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 8888887 88888888888877766544444444555444444444
No 424
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.42 E-value=3.3e+02 Score=22.11 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh
Q 013228 180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLL 259 (447)
Q Consensus 180 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l 259 (447)
-++|..|..++..+......+.. + ..++..+..-|.+ +.+++..+...+.+++...+.....-++ .+++.+-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~--~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-I--SEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--H--HHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-H--HHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 57888998888888654333322 1 1346677777777 8999999999999999888754333222 5666666666
Q ss_pred c
Q 013228 260 I 260 (447)
Q Consensus 260 ~ 260 (447)
.
T Consensus 116 ~ 116 (169)
T PF08623_consen 116 S 116 (169)
T ss_dssp H
T ss_pred h
Confidence 4
No 425
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=25.36 E-value=4.5e+02 Score=22.74 Aligned_cols=71 Identities=20% Similarity=0.135 Sum_probs=43.1
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228 344 LLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419 (447)
Q Consensus 344 ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (447)
+++++++.+...++.+..+++...-..-.. ..........+. ..-..+.++..+.++.++-.|.+.+++..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~---~~~~~~~W~~~~--~lK~~Il~~~~~~~~gvk~~~iKFle~vI 71 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICV---NPSDEQLWESMN--ELKDRILSLWDSENPGVKLAAIKFLERVI 71 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHH--HHHHHHHHGGGSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 467888988888888888877642111000 000111122222 23455777788889999999999999854
No 426
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.38 E-value=2.7e+02 Score=19.79 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=39.6
Q ss_pred cchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCC--hhHHHHHHHHHHHh
Q 013228 137 AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND--KEVMTDACRALFYL 193 (447)
Q Consensus 137 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~--~~v~~~al~~l~~l 193 (447)
.+..+++.|+..+..++.............+...+.+.+.+++ .....-|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999977644444445667777777776553 44566677777666
No 427
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=24.36 E-value=5.8e+02 Score=23.68 Aligned_cols=130 Identities=10% Similarity=0.126 Sum_probs=79.1
Q ss_pred HHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh-hcc---CC-chhHHHHHHHHH
Q 013228 202 QAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL-LIH---NH-KKSIKTDACWTI 275 (447)
Q Consensus 202 ~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~-l~~---~~-~~~v~~~a~~~l 275 (447)
+.+.+.+++..+..+-.. ..+.++..+++.+.++....... .+....+...+.++ ++. +. ...+..+-+..+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 456677888888888644 55788899999999887654322 22333455666666 432 21 334566666666
Q ss_pred HHHhc---CCHHHHHHHHHcC--------------------------ChHHHHHHHhcCchhHHHHHHHHHHHhcCCC--
Q 013228 276 SNITA---GNSEHIQAVIDAG--------------------------LIGPLVNLLQNAEFDIKNWAARAISNATFGG-- 324 (447)
Q Consensus 276 ~nl~~---~~~~~~~~l~~~~--------------------------~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~-- 324 (447)
..+|. ..|.....+++.+ ++..|+..+.++ -.+-..|..+|.-+....
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 66654 4666565555322 356677777765 556666666666655543
Q ss_pred CHHHHHHHHH
Q 013228 325 THEQIKYLVR 334 (447)
Q Consensus 325 ~~~~~~~l~~ 334 (447)
++....++++
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 4555566665
No 428
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=24.14 E-value=4.8e+02 Score=29.66 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=66.8
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 013228 135 KHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLV 214 (447)
Q Consensus 135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~ 214 (447)
.+.++.++..+......+.... .......++..|+..+-+++..-...|+.+|..++.........+ ...+..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~f---ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEF---DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 5667777777777777766553 122336688888877766666556788999999986444332211 12233344
Q ss_pred HhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHH
Q 013228 215 ELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTD 270 (447)
Q Consensus 215 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~ 270 (447)
..+.+=+..-.+....+++.++........ -+.....-.+-+.|.++ +...++.
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~-~~~~K~~ 573 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSS-NPKYKRI 573 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCC-cHHHHHH
Confidence 444443344445557777777643221111 12222333444555555 5555543
No 429
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=24.12 E-value=6 Score=38.67 Aligned_cols=124 Identities=15% Similarity=0.034 Sum_probs=77.6
Q ss_pred CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCh
Q 013228 218 GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA--GNSEHIQAVIDAGLI 295 (447)
Q Consensus 218 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~ 295 (447)
...-..+...|+...+|++.-.. ..+-....+..+.+.+.+. +..+...+..++.++|. +++..+...+....+
T Consensus 45 ~~~ws~~~Vqal~s~~nlaqpt~---~e~S~~~~L~t~t~Gi~S~-drflimr~lEIl~~lcgrEgN~qvIc~~l~~d~y 120 (847)
T KOG2312|consen 45 QPQWSQMQVQALQSNANLAQPTS---GESSLIKQLLTPTRGISSP-DRFLIMRALEILPPLCGREGNPQVICQVLSNDAY 120 (847)
T ss_pred ccccchhhhHhhhhhcccCCcch---hhhhHHHHHhhhccCCCCC-CceeEeeccccCcccccCCCCceeehhhhchHHH
Confidence 44455678889999999987322 1122223444555566677 77888888889998886 455666666666667
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 013228 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345 (447)
Q Consensus 296 ~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 345 (447)
...+..+.-.|.-+......+|..|..-++.......--.+.++.|+.+.
T Consensus 121 ~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 121 GFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred HHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 77777666666666666666666666655433333323345666666554
No 430
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=23.24 E-value=3.1e+02 Score=20.12 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=45.8
Q ss_pred ChHHHHHHHhc----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhh
Q 013228 294 LIGPLVNLLQN----AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC--ADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 294 ~~~~L~~~l~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~ 367 (447)
++..+-+.+.+ .+..-+..+..++..+...+ ...... +.+.+..+|.+ +.++++..++++...+++.-
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~-~~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLG-GSHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHh-HHHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 44444444554 46678889999999888743 233322 35556666654 34589999999999988764
Q ss_pred hh
Q 013228 368 EA 369 (447)
Q Consensus 368 ~~ 369 (447)
+.
T Consensus 86 ~~ 87 (107)
T PF08064_consen 86 DE 87 (107)
T ss_pred CH
Confidence 43
No 431
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.17 E-value=9.1e+02 Score=25.57 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=84.9
Q ss_pred hhhHHHHHHhhccC-ChhHHHHHHHHHHHhccC------CcHHHHHHHHhCcHHHHHHhcCCC--CchhHhHHHHHHHHh
Q 013228 165 RPALPALAQLVHSN-DKEVMTDACRALFYLSEG------TNDEIQAVIEAGVCPRLVELLGHP--SPSVLTRALQTVVNI 235 (447)
Q Consensus 165 ~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~------~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~~l 235 (447)
...++.++.++... ++.++..+...|+.++.. ++...+.+...+.+..|+..+-.+ ........+..+-.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~l 268 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISL 268 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHh
Confidence 67899999988744 578888887777777754 333445555556677666665331 122222222222222
Q ss_pred hcCChhhHHHHHhcC-ChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC---hHHHHHHHhcCchhHHH
Q 013228 236 AAGDDFQTQCIINCG-ALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL---IGPLVNLLQNAEFDIKN 311 (447)
Q Consensus 236 ~~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~---~~~L~~~l~~~~~~v~~ 311 (447)
.. + .+.. .+.. ....+.+-.... ++.+....+.++..-. .+..+.+.+... ++.=...+..+=...|.
T Consensus 269 l~--~-~r~~-~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl 340 (838)
T KOG2073|consen 269 LN--P-RRDT-VETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERL 340 (838)
T ss_pred cC--c-cccc-ccccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence 21 1 1110 0000 011111111222 3444444444433221 122222222111 11111122222335677
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC
Q 013228 312 WAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA 348 (447)
Q Consensus 312 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 348 (447)
..+..+.-+....+......+...++++.++.+....
T Consensus 341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 7777777777766666666667777776666666553
No 432
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.97 E-value=1.2e+03 Score=26.63 Aligned_cols=175 Identities=13% Similarity=-0.046 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHH-HhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 013228 136 HAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALA-QLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLV 214 (447)
Q Consensus 136 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~-~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~ 214 (447)
......+..++.+..+.+.. -........++..+. ....+....++..++..+....-...-.........+-..+.
T Consensus 1498 ~~~d~a~~~a~~~~~lm~~~--~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~ 1575 (1710)
T KOG1851|consen 1498 RDVDLAKNSALLCHSLMSLS--WIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLE 1575 (1710)
T ss_pred ccchHHHHHHHHHHHHHHhh--ccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q ss_pred HhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 013228 215 ELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL 294 (447)
Q Consensus 215 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 294 (447)
.++.+.+..+++.|..+|+-+..++. -......--...........+......|+..++.++...|-.... .
T Consensus 1576 s~l~D~~i~vre~Aa~~Lsgl~~~s~---~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~-----w 1647 (1710)
T KOG1851|consen 1576 SLLNDDQIEVREEAAKCLSGLLQGSK---FQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPL-----W 1647 (1710)
T ss_pred HHHcchHHHHHHHHHHHHHHHHhccc---cccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchh-----h
Q ss_pred hHHHHHHHh---cCchhHHHHHHHHHHHh
Q 013228 295 IGPLVNLLQ---NAEFDIKNWAARAISNA 320 (447)
Q Consensus 295 ~~~L~~~l~---~~~~~v~~~a~~aL~~l 320 (447)
+|..+..+. .+...++..+..+++.+
T Consensus 1648 ip~~L~~Ls~fa~e~~~i~~tvkktvseF 1676 (1710)
T KOG1851|consen 1648 IPKPLMNLSSFARESAAIKQTVKKTVSEF 1676 (1710)
T ss_pred hHHHHHHHHhhcCCchHHHHHHHHHHHHH
No 433
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=21.66 E-value=6.5e+02 Score=23.33 Aligned_cols=139 Identities=16% Similarity=0.125 Sum_probs=73.8
Q ss_pred HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHh-hc---cC--ChhHHHHHHHHHH
Q 013228 118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQL-VH---SN--DKEVMTDACRALF 191 (447)
Q Consensus 118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~l-l~---~~--~~~v~~~al~~l~ 191 (447)
+.+.+.+++..+...-..+.++.++..++..+..+......+ ......+...+.++ ++ .+ .+.+...-+..+.
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p-lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~ 81 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP-LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLN 81 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc-cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 345566778888888777777888888888888887665222 22234455555555 43 21 3334444444444
Q ss_pred Hhc---cCCcHHHHHHHHh--------------------------CcHHHHHHhcCCCCchhHhHH---HHHHHHhhcCC
Q 013228 192 YLS---EGTNDEIQAVIEA--------------------------GVCPRLVELLGHPSPSVLTRA---LQTVVNIAAGD 239 (447)
Q Consensus 192 ~l~---~~~~~~~~~~~~~--------------------------~~~~~L~~lL~~~~~~v~~~a---~~~l~~l~~~~ 239 (447)
.++ ..++.....+.+. .++..|+.++.+. ..+-..| +-.+..++..+
T Consensus 82 ~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~~ 160 (353)
T PF10257_consen 82 TLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASED 160 (353)
T ss_pred HHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCCC
Confidence 444 2333333333222 2456677777665 4444444 33444444445
Q ss_pred hhhHHHHHh-cCChHHHHHh
Q 013228 240 DFQTQCIIN-CGALPYLLGL 258 (447)
Q Consensus 240 ~~~~~~~~~-~~~l~~l~~~ 258 (447)
+...+.+.+ ..+-+.+..-
T Consensus 161 ~~~~~~i~~~S~fc~~latg 180 (353)
T PF10257_consen 161 PALAQYIVEHSDFCPVLATG 180 (353)
T ss_pred cHHHHHHHHcchhHHHHHHH
Confidence 555555665 4444444433
No 434
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.34 E-value=3.5e+02 Score=20.13 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=42.8
Q ss_pred CHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 013228 125 ALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG 196 (447)
Q Consensus 125 ~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~ 196 (447)
.+|.+...+..+...+.+..+...++.++...+ -.......++..+..-...... ...++.++..++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 367777788557778999999999999987652 2222333333333333332222 46788888877743
No 435
>PF15573 Imm27: Immunity protein 27
Probab=21.03 E-value=2.7e+02 Score=23.55 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=44.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
.-+.|++++++..++.|...+.+.++.+|. +++.++ .+-+. +|.+ ....+-..+..+...+
T Consensus 47 vK~LLiqLMN~TkDE~vLNLCiRlFcSV~T-HdDL~~----~nNl~----FLs~asE~~v~TF~s~A~~tl--------- 108 (259)
T PF15573_consen 47 VKNLLIQLMNQTKDEAVLNLCIRLFCSVAT-HDDLRD----SNNLR----FLSSASEFGVFTFASGAITTL--------- 108 (259)
T ss_pred hhHHHHHHHhcchhHHHHHHHHHHHHhhcc-hHhhhc----cccee----hHhhhhHHHHHHHHHHhhccc---------
Confidence 346788999877657788888899999988 334322 22222 2222 2233333444444433
Q ss_pred HHHhcCCHHHHHHHhccc
Q 013228 119 LVLSEEALIPLLTQLNKH 136 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~ 136 (447)
...++|.|+.++..-
T Consensus 109 ---SyeVIPYLLaLleeW 123 (259)
T PF15573_consen 109 ---SYEVIPYLLALLEEW 123 (259)
T ss_pred ---hhhHHHHHHHHHHHH
Confidence 234688888888543
No 436
>PLN03205 ATR interacting protein; Provisional
Probab=20.93 E-value=5e+02 Score=24.39 Aligned_cols=112 Identities=12% Similarity=0.170 Sum_probs=65.8
Q ss_pred cHHHHHHhcCCCCchhHhHHHHHHHHhhc---CChhhHHHHHhcCChHHH---HHhh-ccCCchhHHHHHHHHHHHHhcC
Q 013228 209 VCPRLVELLGHPSPSVLTRALQTVVNIAA---GDDFQTQCIINCGALPYL---LGLL-IHNHKKSIKTDACWTISNITAG 281 (447)
Q Consensus 209 ~~~~L~~lL~~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~l---~~~l-~~~~~~~v~~~a~~~l~nl~~~ 281 (447)
+++.|+.+-.-++..+...+++.|..+.. ++....+.-++.+++..+ .++- .+. ...+|.+|+.+..-+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~T-EE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRT-EEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccc-hhheeeehhhhhHHhhhc
Confidence 34556666666777777777777766542 333333334444444332 2222 234 677888887666555442
Q ss_pred --CHHHHHHHHHcCChHHHHHHHhcC-chhHHHHHHHHHHHhc
Q 013228 282 --NSEHIQAVIDAGLIGPLVNLLQNA-EFDIKNWAARAISNAT 321 (447)
Q Consensus 282 --~~~~~~~l~~~~~~~~L~~~l~~~-~~~v~~~a~~aL~~l~ 321 (447)
....++.+-...+++.+-.+|+.+ -..|+++|+..|.-+.
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 223344455556788888888854 5788888887765543
No 437
>PRK09169 hypothetical protein; Validated
Probab=20.24 E-value=1.6e+03 Score=27.16 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=44.1
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 41 VPRFVEFL-MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 41 v~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
+..+++-+ +-++ ......++..|.......+..+..+-.. .+..++..+.. ++....+.+...|..-....+..+.
T Consensus 165 v~~lLNalSKWP~-~~~c~~aa~~lA~~la~~~~l~~al~~q-~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~ 242 (2316)
T PRK09169 165 FALLLNALSKWPD-NTDCQTAAEQLADRLASDSRLLQAMDAQ-EVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQ 242 (2316)
T ss_pred HHHHHHHhccCCC-chHHHHHHHHHHHHhccCHHHHHhcchH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHH
Confidence 44444444 4456 3555555666665555455555444333 34444444443 4444444445444444433333332
Q ss_pred HHHhcCCHHHHHHHhccccch
Q 013228 119 LVLSEEALIPLLTQLNKHAKL 139 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~ 139 (447)
.+ ....+..+++-|.+-++.
T Consensus 243 ~l-~~q~va~~LNAlSKWp~~ 262 (2316)
T PRK09169 243 SL-RAQEVALLLNALSKWPDD 262 (2316)
T ss_pred hc-CHHHHHHHHHHHhcCCCC
Confidence 22 122244445555444433
Done!