Query 013228
Match_columns 447
No_of_seqs 333 out of 2288
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 06:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 2.4E-58 8.3E-63 444.1 45.8 438 1-446 62-509 (510)
2 3tpo_A Importin subunit alpha- 100.0 5.2E-57 1.8E-61 437.5 46.3 437 2-446 82-528 (529)
3 4b8j_A Importin subunit alpha- 100.0 7.2E-50 2.4E-54 389.1 48.8 423 2-426 80-502 (528)
4 1wa5_B Importin alpha subunit; 100.0 1.5E-47 5.3E-52 372.5 48.4 421 2-426 93-516 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 4.4E-46 1.5E-50 355.8 45.4 422 2-426 26-449 (450)
6 3ul1_B Importin subunit alpha- 100.0 1.3E-40 4.6E-45 320.6 29.9 364 1-368 105-481 (510)
7 3tpo_A Importin subunit alpha- 100.0 3.8E-40 1.3E-44 319.3 32.1 363 2-368 125-500 (529)
8 1xm9_A Plakophilin 1; armadill 100.0 2.3E-39 7.7E-44 307.2 30.5 365 40-423 3-452 (457)
9 3now_A UNC-45 protein, SD10334 100.0 2.5E-39 8.7E-44 317.6 28.0 362 2-371 383-788 (810)
10 3nmz_A APC variant protein; pr 100.0 8.5E-39 2.9E-43 297.8 29.9 359 2-367 38-452 (458)
11 3now_A UNC-45 protein, SD10334 100.0 8E-39 2.7E-43 314.1 29.1 400 2-420 336-782 (810)
12 1jdh_A Beta-catenin; beta-cate 100.0 1.4E-37 4.8E-42 303.1 36.7 394 2-418 107-528 (529)
13 2z6h_A Catenin beta-1, beta-ca 100.0 2.4E-36 8.2E-41 300.0 41.0 392 1-415 103-522 (644)
14 3l6x_A Catenin delta-1; cateni 100.0 8.6E-37 2.9E-41 290.3 32.9 386 34-437 43-497 (584)
15 1xm9_A Plakophilin 1; armadill 100.0 2.4E-38 8.4E-43 300.1 21.5 358 1-367 7-451 (457)
16 3l6x_A Catenin delta-1; cateni 100.0 2.3E-37 7.9E-42 294.1 26.0 360 1-368 53-479 (584)
17 4b8j_A Importin subunit alpha- 100.0 8.9E-36 3E-40 289.8 37.9 365 39-420 74-443 (528)
18 2jdq_A Importin alpha-1 subuni 100.0 4.2E-37 1.4E-41 293.6 27.5 362 2-368 70-446 (450)
19 1wa5_B Importin alpha subunit; 100.0 2.5E-35 8.6E-40 286.5 40.1 371 37-421 85-458 (530)
20 2z6g_A B-catenin; FULL-length, 100.0 2.9E-35 9.9E-40 296.4 40.6 399 1-422 239-665 (780)
21 1jdh_A Beta-catenin; beta-cate 100.0 2.6E-35 9E-40 287.0 27.8 397 2-420 65-489 (529)
22 3nmz_A APC variant protein; pr 100.0 7.3E-36 2.5E-40 278.1 21.6 313 8-324 94-452 (458)
23 2z6h_A Catenin beta-1, beta-ca 100.0 2.5E-34 8.5E-39 285.5 30.6 397 2-420 62-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 5.8E-34 2E-38 287.0 29.5 397 2-420 198-622 (780)
25 3nmw_A APC variant protein; AR 100.0 1.4E-31 4.9E-36 242.3 20.5 275 8-285 44-339 (354)
26 3nmw_A APC variant protein; AR 100.0 2.2E-31 7.4E-36 241.1 21.5 270 54-326 46-338 (354)
27 4hxt_A De novo protein OR329; 100.0 6.9E-28 2.4E-32 211.2 24.9 240 39-281 2-242 (252)
28 4db8_A Armadillo-repeat protei 100.0 8.8E-28 3E-32 210.4 21.5 239 39-280 12-251 (252)
29 4hxt_A De novo protein OR329; 100.0 3.3E-26 1.1E-30 200.5 28.7 249 166-429 2-250 (252)
30 4db8_A Armadillo-repeat protei 100.0 1.1E-26 3.8E-31 203.4 21.4 239 82-322 12-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 8.2E-26 2.8E-30 199.1 23.3 236 180-424 54-291 (296)
32 3opb_A SWI5-dependent HO expre 99.9 4.1E-24 1.4E-28 206.1 26.4 389 7-420 266-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 2.3E-24 8E-29 207.7 24.0 376 10-402 308-758 (778)
34 4db6_A Armadillo repeat protei 99.9 6.4E-24 2.2E-28 180.4 23.3 199 165-365 11-209 (210)
35 4db6_A Armadillo repeat protei 99.9 2.1E-23 7.3E-28 177.1 21.8 199 37-237 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 2.3E-22 7.9E-27 177.1 22.6 239 41-280 30-287 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 8.5E-22 2.9E-26 165.7 15.9 197 40-238 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.9 1E-21 3.5E-26 165.2 11.4 192 1-196 13-230 (233)
39 1b3u_A Protein (protein phosph 99.8 6.6E-19 2.3E-23 173.5 22.3 343 39-419 242-586 (588)
40 1b3u_A Protein (protein phosph 99.8 2.1E-18 7.1E-23 170.0 21.7 375 3-420 171-548 (588)
41 4fdd_A Transportin-1; heat rep 99.8 1E-18 3.4E-23 179.4 19.8 350 2-369 96-475 (852)
42 4fdd_A Transportin-1; heat rep 99.8 3.3E-18 1.1E-22 175.6 19.5 386 6-420 58-471 (852)
43 2vgl_B AP-2 complex subunit be 99.8 2E-15 6.7E-20 147.9 32.3 369 2-420 55-457 (591)
44 3grl_A General vesicular trans 99.8 1E-14 3.5E-19 137.4 34.6 407 8-428 74-558 (651)
45 1oyz_A Hypothetical protein YI 99.7 6.2E-16 2.1E-20 137.1 22.6 258 36-361 20-278 (280)
46 3grl_A General vesicular trans 99.7 2.1E-15 7.3E-20 142.0 26.5 324 40-369 22-398 (651)
47 2vgl_B AP-2 complex subunit be 99.7 6.1E-16 2.1E-20 151.4 20.0 325 2-363 127-455 (591)
48 1oyz_A Hypothetical protein YI 99.7 1E-14 3.5E-19 129.3 23.6 257 79-416 20-278 (280)
49 1w63_A Adapter-related protein 99.6 1E-14 3.6E-19 143.2 21.5 355 3-420 114-490 (618)
50 2bpt_A Importin beta-1 subunit 99.6 4.3E-14 1.5E-18 145.5 25.7 343 9-368 344-714 (861)
51 1ibr_B P95, importin beta-1 su 99.6 8.5E-15 2.9E-19 139.7 17.5 385 3-421 8-438 (462)
52 1qgr_A Protein (importin beta 99.6 2.4E-14 8.4E-19 147.6 21.3 267 4-280 180-479 (876)
53 2bpt_A Importin beta-1 subunit 99.6 1.1E-14 3.9E-19 149.8 18.3 396 3-420 376-811 (861)
54 1w63_A Adapter-related protein 99.6 1.4E-13 4.8E-18 135.2 21.9 321 3-366 149-491 (618)
55 1u6g_C TIP120 protein, CAND1; 99.6 7.8E-14 2.7E-18 148.7 21.3 403 2-421 12-464 (1230)
56 1qgr_A Protein (importin beta 99.6 1.6E-13 5.3E-18 141.7 22.2 400 3-420 373-827 (876)
57 1ibr_B P95, importin beta-1 su 99.6 1.2E-14 4.2E-19 138.5 11.8 350 8-369 49-441 (462)
58 1u6g_C TIP120 protein, CAND1; 99.5 3.4E-13 1.1E-17 143.9 19.1 392 3-419 93-547 (1230)
59 3ltm_A Alpha-REP4; protein eng 99.5 2.1E-12 7.1E-17 109.1 19.2 187 38-281 18-204 (211)
60 3ltm_A Alpha-REP4; protein eng 99.5 2.1E-12 7.2E-17 109.0 19.2 188 81-324 18-205 (211)
61 3ltj_A Alpharep-4; protein eng 99.5 7E-12 2.4E-16 104.9 21.5 185 82-322 14-198 (201)
62 3ltj_A Alpharep-4; protein eng 99.5 4.2E-12 1.4E-16 106.3 19.1 186 37-279 12-197 (201)
63 2vgl_A Adaptor protein complex 99.4 5E-10 1.7E-14 109.7 30.0 327 2-366 80-434 (621)
64 2vgl_A Adaptor protein complex 99.4 2.5E-11 8.6E-16 118.8 20.1 360 3-420 118-509 (621)
65 2db0_A 253AA long hypothetical 99.2 3.2E-09 1.1E-13 82.2 19.7 218 80-323 30-247 (253)
66 4gmo_A Putative uncharacterize 99.2 9.9E-10 3.4E-14 109.0 19.5 218 37-279 33-257 (684)
67 3b2a_A TON_1937, putative unch 99.1 2.9E-09 9.9E-14 86.2 14.9 226 165-418 32-259 (265)
68 4ady_A RPN2, 26S proteasome re 99.1 1.5E-08 5.1E-13 100.6 22.7 265 7-325 406-679 (963)
69 3tjz_B Coatomer subunit gamma; 99.1 1.1E-08 3.7E-13 91.4 18.7 272 2-317 74-348 (355)
70 3tjz_B Coatomer subunit gamma; 99.0 2.2E-08 7.4E-13 89.5 19.4 277 40-361 69-349 (355)
71 4gmo_A Putative uncharacterize 99.0 2.4E-09 8.1E-14 106.3 12.8 197 165-365 34-258 (684)
72 2db0_A 253AA long hypothetical 99.0 6.2E-07 2.1E-11 69.7 22.7 217 36-280 29-246 (253)
73 1ho8_A Vacuolar ATP synthase s 99.0 3.2E-07 1.1E-11 83.8 24.1 321 81-419 76-475 (480)
74 4ady_A RPN2, 26S proteasome re 98.9 4.2E-07 1.4E-11 90.4 24.3 291 11-366 373-677 (963)
75 3b2a_A TON_1937, putative unch 98.9 7E-08 2.4E-12 78.3 14.3 184 208-421 33-219 (265)
76 2qk2_A LP04448P; mini spindles 98.8 2.6E-08 8.9E-13 85.7 11.9 185 128-323 19-206 (242)
77 2qk2_A LP04448P; mini spindles 98.8 9.7E-08 3.3E-12 82.1 15.1 181 3-195 22-205 (242)
78 2qk1_A Protein STU2; STU2P, XM 98.7 1.4E-07 4.8E-12 81.0 13.3 192 129-322 21-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.7 1.8E-07 6.1E-12 80.3 12.3 191 43-237 20-220 (249)
80 2iw3_A Elongation factor 3A; a 98.6 5.4E-06 1.8E-10 83.6 21.8 290 10-321 28-323 (986)
81 1te4_A Conserved protein MTH18 98.6 1.2E-08 4.2E-13 78.4 2.3 121 38-193 11-131 (131)
82 1ho8_A Vacuolar ATP synthase s 98.6 5E-05 1.7E-09 69.5 24.8 325 37-366 75-477 (480)
83 1te4_A Conserved protein MTH18 98.5 2.1E-08 7.2E-13 77.1 1.4 120 207-362 11-130 (131)
84 1wa5_C Importin alpha RE-expor 98.5 9.5E-05 3.2E-09 76.8 28.0 338 4-366 93-526 (960)
85 3dad_A FH1/FH2 domain-containi 98.4 6.7E-06 2.3E-10 71.4 15.2 188 213-410 123-326 (339)
86 1wa5_C Importin alpha RE-expor 98.4 0.00012 4.2E-09 75.9 26.6 381 8-422 49-527 (960)
87 2iw3_A Elongation factor 3A; a 98.4 9.4E-05 3.2E-09 74.7 23.5 298 87-421 19-325 (986)
88 2x1g_F Cadmus; transport prote 98.3 0.0002 6.7E-09 74.6 26.1 394 8-420 256-722 (971)
89 2x1g_F Cadmus; transport prote 98.3 0.00023 8E-09 74.0 26.6 331 11-366 204-616 (971)
90 3dad_A FH1/FH2 domain-containi 98.3 2.6E-05 8.9E-10 67.8 15.0 186 169-355 121-326 (339)
91 4hat_C Exportin-1; heat repeat 98.2 0.00044 1.5E-08 71.4 26.1 336 8-369 207-622 (1023)
92 2x19_B Importin-13; nuclear tr 98.0 0.0015 5E-08 68.0 25.5 338 49-421 459-847 (963)
93 2x19_B Importin-13; nuclear tr 98.0 0.0021 7.1E-08 66.8 26.3 330 12-367 218-601 (963)
94 3m1i_C Exportin-1; heat repeat 98.0 0.0017 6E-08 68.0 24.9 343 8-367 207-620 (1049)
95 4hat_C Exportin-1; heat repeat 97.9 0.0027 9.2E-08 65.7 24.0 389 8-420 465-929 (1023)
96 3m1i_C Exportin-1; heat repeat 97.7 0.0078 2.7E-07 63.1 24.9 312 41-369 196-573 (1049)
97 3ibv_A Exportin-T; karyopherin 97.6 0.0017 5.9E-08 66.9 17.0 306 50-369 204-570 (980)
98 4ffb_C Protein STU2; tubulin f 97.6 0.00099 3.4E-08 58.1 12.8 186 129-323 14-213 (278)
99 4ffb_C Protein STU2; tubulin f 97.5 0.0028 9.7E-08 55.2 14.9 185 4-196 17-213 (278)
100 2of3_A ZYG-9; multifunctional 97.5 0.0048 1.7E-07 52.4 15.5 181 85-280 49-236 (266)
101 3ibv_A Exportin-T; karyopherin 97.5 0.029 1E-06 57.9 23.8 340 8-367 455-872 (980)
102 3oc3_A Helicase MOT1, MOT1; re 97.4 0.0009 3.1E-08 62.0 10.5 244 40-318 175-432 (800)
103 2of3_A ZYG-9; multifunctional 97.4 0.0016 5.5E-08 55.4 11.5 178 170-368 50-239 (266)
104 3oc3_A Helicase MOT1, MOT1; re 97.4 0.00074 2.5E-08 62.5 9.7 246 83-361 175-432 (800)
105 3c2g_A SYS-1 protein; beta-cat 97.4 0.045 1.6E-06 47.5 19.9 294 106-418 266-616 (619)
106 1upk_A MO25 protein; transfera 97.4 0.019 6.5E-07 49.9 17.9 201 202-416 72-279 (341)
107 3gjx_A Exportin-1; transport, 97.4 0.063 2.2E-06 55.5 25.0 314 41-369 208-599 (1073)
108 1upk_A MO25 protein; transfera 97.4 0.051 1.8E-06 47.3 20.2 240 165-418 77-330 (341)
109 2fv2_A RCD1 required for cell 97.3 0.01 3.4E-07 49.3 14.9 188 179-369 14-228 (268)
110 1lrv_A LRV, leucine-rich repea 97.3 0.00011 3.9E-09 62.0 3.2 185 46-360 57-241 (244)
111 1lrv_A LRV, leucine-rich repea 97.2 9.5E-05 3.2E-09 62.5 1.9 65 3-105 57-121 (244)
112 3gjx_A Exportin-1; transport, 97.1 0.3 1E-05 50.7 26.4 98 54-156 493-597 (1073)
113 2fv2_A RCD1 required for cell 97.1 0.042 1.4E-06 45.7 16.2 190 222-418 15-222 (268)
114 3u0r_A Apoptosis inhibitor 5; 96.9 0.23 7.8E-06 45.5 22.2 248 50-325 39-301 (507)
115 2f31_A Diaphanous protein homo 96.9 0.014 4.7E-07 49.1 12.3 162 241-411 35-219 (233)
116 3l9t_A Putative uncharacterize 96.7 0.071 2.4E-06 44.0 14.2 144 41-206 73-218 (240)
117 3eg5_B Protein diaphanous homo 96.4 0.058 2E-06 48.9 13.7 162 240-410 100-284 (383)
118 3c2g_A SYS-1 protein; beta-cat 96.3 0.035 1.2E-06 48.2 10.7 173 190-364 266-472 (619)
119 3ebb_A Phospholipase A2-activa 96.3 0.24 8.2E-06 43.2 16.4 173 40-219 104-287 (304)
120 3u0r_A Apoptosis inhibitor 5; 96.3 0.17 5.8E-06 46.4 15.5 122 137-278 40-161 (507)
121 2bnx_A Diaphanous protein homo 96.0 0.27 9.1E-06 44.7 15.6 161 241-410 39-222 (386)
122 3l9t_A Putative uncharacterize 95.9 0.16 5.4E-06 41.9 12.2 145 84-248 73-218 (240)
123 3a6p_A Exportin-5; exportin-5, 95.8 0.27 9.3E-06 52.1 17.1 283 54-366 27-381 (1204)
124 1lsh_A Lipovitellin (LV-1N, LV 95.7 1.5 5E-05 45.8 21.6 173 126-327 393-581 (1056)
125 2f31_A Diaphanous protein homo 95.2 0.39 1.3E-05 40.2 12.7 140 16-157 21-183 (233)
126 3eg5_B Protein diaphanous homo 95.0 0.56 1.9E-05 42.5 14.1 141 16-158 87-250 (383)
127 3ebb_A Phospholipase A2-activa 94.2 0.26 8.8E-06 43.0 9.5 108 44-155 152-264 (304)
128 3gs3_A Symplekin, LD45768P; he 94.0 2.4 8.3E-05 35.7 18.4 88 11-109 30-117 (257)
129 2bnx_A Diaphanous protein homo 93.8 1.8 6.1E-05 39.2 14.4 141 17-158 26-188 (386)
130 1x5b_A Signal transducing adap 92.1 1.1 3.7E-05 34.9 9.1 72 337-420 53-125 (163)
131 1lsh_A Lipovitellin (LV-1N, LV 91.8 14 0.00048 38.5 20.5 166 83-281 392-577 (1056)
132 3a6p_A Exportin-5; exportin-5, 91.2 17 0.00059 38.5 25.7 269 40-323 46-381 (1204)
133 3qml_C Protein SLS1, nucleotid 91.1 3.6 0.00012 35.3 11.8 150 166-321 22-188 (315)
134 3o2t_A Symplekin; heat repeat, 90.9 8.7 0.0003 34.5 18.8 88 11-109 40-127 (386)
135 3qml_C Protein SLS1, nucleotid 90.7 2.8 9.7E-05 35.9 10.8 134 224-365 44-189 (315)
136 3ldz_A STAM-1, signal transduc 90.2 0.75 2.6E-05 34.8 6.3 72 337-420 43-114 (140)
137 1juq_A ADP-ribosylation factor 89.9 1.2 4.2E-05 34.9 7.6 72 337-420 51-128 (171)
138 1mhq_A ADP-ribosylation factor 89.9 1.2 4E-05 34.1 7.2 72 337-420 39-116 (148)
139 1vdy_A Hypothetical protein (R 89.9 2.1 7.2E-05 32.1 8.4 78 337-426 50-136 (140)
140 3g2s_A C-terminal fragment of 89.4 1.3 4.5E-05 33.8 7.1 72 337-420 49-126 (149)
141 3ldz_A STAM-1, signal transduc 86.2 1.9 6.6E-05 32.5 6.4 72 294-365 43-114 (140)
142 3g2s_A C-terminal fragment of 85.8 2.4 8.4E-05 32.3 6.7 73 294-366 49-127 (149)
143 1mhq_A ADP-ribosylation factor 84.2 4.7 0.00016 30.7 7.7 72 294-365 39-116 (148)
144 3o2t_A Symplekin; heat repeat, 83.5 12 0.00042 33.5 11.2 132 224-366 41-184 (386)
145 1x5b_A Signal transducing adap 81.1 2.5 8.7E-05 32.8 5.2 71 294-364 53-124 (163)
146 2npp_B PP2A, B subunit, serine 81.1 24 0.00084 32.3 12.4 222 2-242 168-404 (449)
147 3zyq_A Hepatocyte growth facto 81.0 4.7 0.00016 33.3 7.1 72 337-420 46-118 (226)
148 1juq_A ADP-ribosylation factor 80.4 5 0.00017 31.4 6.8 72 294-365 51-128 (171)
149 1dvp_A HRS, hepatocyte growth 79.7 5.7 0.00019 32.6 7.2 72 337-420 43-115 (220)
150 1elk_A Target of MYB1; superhe 79.6 6.6 0.00023 30.2 7.1 72 337-420 54-130 (157)
151 3ut4_A CTHE_2751, putative unc 79.1 10 0.00035 28.0 7.5 95 294-421 32-131 (134)
152 1vsy_5 Proteasome activator BL 78.5 14 0.00049 38.0 11.1 186 83-279 134-364 (997)
153 3gs3_A Symplekin, LD45768P; he 76.6 33 0.0011 28.8 14.6 131 140-279 30-172 (257)
154 2npp_B PP2A, B subunit, serine 75.0 51 0.0017 30.2 18.2 254 16-287 137-406 (449)
155 3fga_B Serine/threonine-protei 70.8 60 0.0021 29.2 15.2 45 75-119 122-166 (403)
156 3fga_B Serine/threonine-protei 69.7 64 0.0022 29.1 15.0 233 165-423 128-369 (403)
157 3zyq_A Hepatocyte growth facto 69.5 1.7 5.7E-05 36.0 1.5 67 3-69 52-118 (226)
158 1vsy_5 Proteasome activator BL 68.5 17 0.00059 37.4 8.9 216 126-366 135-366 (997)
159 1vdy_A Hypothetical protein (R 65.4 14 0.00049 27.6 5.6 74 294-367 50-132 (140)
160 1dvp_A HRS, hepatocyte growth 64.6 2.3 7.7E-05 35.1 1.3 67 3-69 49-115 (220)
161 3gae_A Protein DOA1; UFD3, CDC 63.6 30 0.001 29.0 8.1 103 91-195 99-217 (253)
162 3pst_A Protein DOA1; protein d 61.0 17 0.00058 33.0 6.3 104 90-197 270-391 (425)
163 2jak_A Serine/threonine-protei 59.8 47 0.0016 29.8 8.9 184 165-360 173-362 (392)
164 3l3f_X Protein DOA1, DOA1/UFD3 57.9 15 0.0005 32.7 5.3 103 90-196 207-327 (362)
165 2jak_A Serine/threonine-protei 54.4 1.2E+02 0.0042 27.2 10.7 45 75-119 167-211 (392)
166 2xpp_A IWS1, ECU08_0440; trans 53.8 58 0.002 24.5 7.2 75 328-419 53-135 (145)
167 1elk_A Target of MYB1; superhe 53.7 22 0.00074 27.3 5.1 72 294-365 54-130 (157)
168 1wjt_A Transcription elongatio 52.3 28 0.00095 24.4 5.0 37 384-420 47-84 (103)
169 1w9c_A CRM1 protein, exportin 46.0 1.5E+02 0.0051 25.8 17.9 180 223-420 44-245 (321)
170 3rru_A TOM1L1 protein; structu 45.0 36 0.0012 25.8 5.1 72 337-420 54-130 (152)
171 3gae_A Protein DOA1; UFD3, CDC 44.1 47 0.0016 27.8 6.1 130 13-155 71-218 (253)
172 3pst_A Protein DOA1; protein d 42.3 53 0.0018 29.8 6.4 103 217-322 271-389 (425)
173 3l3f_X Protein DOA1, DOA1/UFD3 40.3 48 0.0016 29.4 5.7 129 183-322 180-326 (362)
174 2g7o_A Protein TRAM; four heli 34.3 40 0.0014 21.5 3.1 21 405-425 50-70 (70)
175 1pqv_S STP-alpha, transcriptio 26.7 1.5E+02 0.005 25.6 6.5 37 384-420 38-74 (309)
176 1vsy_4 Proteasome activator BL 26.1 3.7E+02 0.013 26.9 10.0 116 74-195 332-455 (799)
177 2b6c_A Hypothetical protein EF 26.0 2.6E+02 0.0089 22.5 11.0 134 135-291 65-199 (220)
178 2b6c_A Hypothetical protein EF 24.9 2.7E+02 0.0093 22.4 12.7 142 42-207 58-200 (220)
179 1vsy_4 Proteasome activator BL 23.7 5.6E+02 0.019 25.6 16.9 99 135-236 349-454 (799)
180 4atg_A TAF6; transcription, TF 23.4 1.8E+02 0.0062 23.1 5.9 112 81-193 39-160 (196)
181 3s4w_B Protein FACD2, fanconi 22.8 7.2E+02 0.025 26.6 20.5 101 257-365 407-507 (1323)
182 3rru_A TOM1L1 protein; structu 22.7 96 0.0033 23.5 4.1 73 294-366 54-131 (152)
183 1sz9_A PCF11 protein; RNA poly 22.0 2.5E+02 0.0085 20.9 7.7 71 251-322 44-114 (144)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.4e-58 Score=444.13 Aligned_cols=438 Identities=43% Similarity=0.681 Sum_probs=384.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
+|+.++|+|++.|+.|+..++++++.+++++++.+++.|++|.|+++|++.+++++|..|+|+|+|++.++++.+..+++
T Consensus 62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~ 141 (510)
T 3ul1_B 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 141 (510)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46789999999999999999999998878889999999999999999987766899999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc----chhHHHHHHHHHHHhcCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA----KLSMLRIATWTLSNFCAGK 156 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~ 156 (447)
.|+++.|+.+|.++++++++.|+|+|+||+.+++.++..+.+.|++++++.++.... ...+++.++|++.+++.+.
T Consensus 142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999995432 2357889999999999887
Q ss_pred -CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHh
Q 013228 157 -PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235 (447)
Q Consensus 157 -~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l 235 (447)
+........+++|.|++++.+++++++..++++|++++..+.+..+.+.+.|+++.|+.+|.+++..++..++++++++
T Consensus 222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 5555666689999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHH
Q 013228 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR 315 (447)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~ 315 (447)
+.+++.....+++.|+++.|+.++.++ +..+++.|+|+|+|++.+++++.+.+++.|++|.|+.++.+++.+++..|+|
T Consensus 302 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~ 380 (510)
T 3ul1_B 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW 380 (510)
T ss_dssp TTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred hcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 999998989999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH
Q 013228 316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK 395 (447)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 395 (447)
+|+|++..++.++...+.+.|+++.|+++|++.|++++..++++|.++++.+++.. ..+.++..|++.||++.
T Consensus 381 aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~ 453 (510)
T 3ul1_B 381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDK 453 (510)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTHHHH
T ss_pred HHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcCcHHH
Confidence 99999998889999999999999999999999999999999999999999877643 45668999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCCCCC---CCCCC-CCcccCCC-CCCCCcc
Q 013228 396 IENLRSHDNDEIHEKSVKILETYWCGRVAGP---QPGNE-GEDALGSN-VITDGKV 446 (447)
Q Consensus 396 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~---~~~~~-~~~~~~~~-~~~~~~~ 446 (447)
|+.|++|++++|+++|..+|++||+.+++|+ .|+.. ..|.|+.+ .+|.||-
T Consensus 454 ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (510)
T 3ul1_B 454 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAPGTFN 509 (510)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCccccccCCCCCCCCCCC
Confidence 9999999999999999999999999776665 56665 55777644 4566664
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.2e-57 Score=437.47 Aligned_cols=437 Identities=43% Similarity=0.678 Sum_probs=383.5
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++.++|+|++.++.|+..++++++.+.+++.+.+++.|++|.|+++|+..+++.++..|+|+|++++.++++.+..+++.
T Consensus 82 v~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~ 161 (529)
T 3tpo_A 82 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 161 (529)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 56789999999999999999999887778899999999999999999877668999999999999999999999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc----chhHHHHHHHHHHHhcCCC-
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA----KLSMLRIATWTLSNFCAGK- 156 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~- 156 (447)
|+++.|+.++.++++.+++.|+|+|+||+.+++.++..+.+.|++++++.++.... ...+++.++|++++++.+.
T Consensus 162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 241 (529)
T 3tpo_A 162 GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 241 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999995432 2357889999999999887
Q ss_pred CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhh
Q 013228 157 PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIA 236 (447)
Q Consensus 157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~ 236 (447)
+........+++|.|+.++.+++++++..++|+|++++..+.+..+.+.+.|+++.|+.+|.+++..++..++++|++++
T Consensus 242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 321 (529)
T 3tpo_A 242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 321 (529)
T ss_dssp TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 55556667899999999999999999999999999999988888888889999999999999999999999999999999
Q ss_pred cCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHH
Q 013228 237 AGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARA 316 (447)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~a 316 (447)
.+++.....+++.|+++.|+.++.++ +..++..|+|+|+|++.++++....+++.|++|.|+.++.+++.+++..|+|+
T Consensus 322 ~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~a 400 (529)
T 3tpo_A 322 TGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA 400 (529)
T ss_dssp TSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 99998889999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHH
Q 013228 317 ISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKI 396 (447)
Q Consensus 317 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 396 (447)
|+|++..+++++...+.+.|+++.|+++|.+.|++++..++++|.++++.++... ..+.++..|++.||++.|
T Consensus 401 L~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~i 473 (529)
T 3tpo_A 401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKI 473 (529)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCCcHHHH
Confidence 9999998889999999999999999999999999999999999999999877643 456689999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCCCCC---CCCCC-CCcccCCCC-CCCCcc
Q 013228 397 ENLRSHDNDEIHEKSVKILETYWCGRVAGP---QPGNE-GEDALGSNV-ITDGKV 446 (447)
Q Consensus 397 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~---~~~~~-~~~~~~~~~-~~~~~~ 446 (447)
+.|++|+|++|+++|..+|++||.++++|+ .|+.. ..|.|+.++ +|.||-
T Consensus 474 e~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 528 (529)
T 3tpo_A 474 EALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAPGTFN 528 (529)
T ss_dssp TGGGGCSSHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCcccccCCCCCCCCCCC
Confidence 999999999999999999999998766655 56666 668877544 556663
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.2e-50 Score=389.05 Aligned_cols=423 Identities=74% Similarity=1.128 Sum_probs=386.7
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++.|.++++.++..|++.|+++++....+....+++.|++|.|+++|++++++.++..|+++|++++.++++.+..+++.
T Consensus 80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 159 (528)
T 4b8j_A 80 IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH 159 (528)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 56788999999999999999999886457788899999999999999988658999999999999999889999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
|+++.|+.++.++++.++..|+|+|++++.+.+..+..+...|++++++.++..+.+..++..++|+|.+++...+....
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~ 239 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF 239 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH
Confidence 99999999999999999999999999999998888999999999999999997777899999999999999998777777
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
....+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++.
T Consensus 240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence 77899999999999999999999999999999988888778889999999999999999999999999999999998888
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~ 321 (447)
....+++.|+++.|+.+|.++.+..++..|+|+|+|++.++++.++.+++.|+++.|+.++.++++.++..|+++|++++
T Consensus 320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 320 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNAT 399 (528)
T ss_dssp HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 88889999999999999987657899999999999999988888999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228 322 FGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS 401 (447)
Q Consensus 322 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~ 401 (447)
..++++....+.+.|+++.|+.++.+.+++++..++++|.+++..++....... ...++++..+.+.|+++.|..+++
T Consensus 400 ~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l~~L~~ 477 (528)
T 4b8j_A 400 SGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQS 477 (528)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHHHHHHHHc
Confidence 987789999999999999999999999999999999999999998766432211 245668999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCC
Q 013228 402 HDNDEIHEKSVKILETYWCGRVAGP 426 (447)
Q Consensus 402 ~~~~~v~~~a~~~l~~~~~~~~~~~ 426 (447)
+++++++++|..++++||+.+++|+
T Consensus 478 ~~~~~v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 478 HDNNEIYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp CSSHHHHHHHHHHHHHHCC------
T ss_pred CCCHHHHHHHHHHHHHHCCCccccc
Confidence 9999999999999999999877766
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.5e-47 Score=372.46 Aligned_cols=421 Identities=52% Similarity=0.765 Sum_probs=381.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++.|+++++.++..|++.|+++++....+....+++.|++|.|+++|.+++++.++..|+++|++++.++++.+..+++.
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 172 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 172 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence 56788999999999999999998875456678889999999999999998338999999999999999888999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPI 160 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 160 (447)
|+++.|+.+|.++++.++..|+|+|++++.+.+..+..+...|+++.++.++ .+.+..++..++|+|.+++... +...
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999999999999888899999999999999999 5578899999999999999886 6666
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
.....+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 77778999999999999999999999999999998877777788889999999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
.....+++.|+++.|+.+|.++ +..++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+++|+++
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888889999999999999999 999999999999999988888888999999999999999999999999999999999
Q ss_pred cCCCCH--HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHH
Q 013228 321 TFGGTH--EQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIEN 398 (447)
Q Consensus 321 ~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 398 (447)
+..+++ +....+.+.|+++.|+.++.+.+++++..++++|.+++..++...... .+..++++..+.+.|+++.|..
T Consensus 411 ~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~L~~ 488 (530)
T 1wa5_B 411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNINENADFIEKAGGMEKIFN 488 (530)
T ss_dssp HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSCHHHHHHHHTTHHHHHHG
T ss_pred HhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccccHHHHHHHHcCcHHHHHH
Confidence 987666 778888999999999999999999999999999999998776532110 0134568999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 013228 399 LRSHDNDEIHEKSVKILETYWCGRVAGP 426 (447)
Q Consensus 399 l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 426 (447)
|++++++++++.|..+|++||..+++|+
T Consensus 489 L~~~~~~~v~~~a~~il~~~~~~~~~~~ 516 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYFGEEEDAV 516 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHSSSCC---
T ss_pred HHcCCCHHHHHHHHHHHHHHCCcccccc
Confidence 9999999999999999999998777653
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=4.4e-46 Score=355.76 Aligned_cols=422 Identities=54% Similarity=0.828 Sum_probs=376.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhcc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
++.++++++.++..|+..|+++++....+..+.+++. |+++.|+++|++++++.++..|+++|.+++.++++....+++
T Consensus 26 ~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 105 (450)
T 2jdq_A 26 IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ 105 (450)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4567899999999999999999874335556677777 999999999999833899999999999999988888888899
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKP 159 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~ 159 (447)
.|+++.|+.++.++++.++..++++|++++.+.+..+..+.+.|+++.++.++..+.+..++..++|+|.+++... +..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999988888989899999999999965578899999999999999876 555
Q ss_pred ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 239 (447)
......+++|.++.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+.
T Consensus 186 ~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 265 (450)
T 2jdq_A 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265 (450)
T ss_dssp CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence 55566899999999999999999999999999999877777777888999999999999999999999999999999988
Q ss_pred hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHH
Q 013228 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319 (447)
Q Consensus 240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~ 319 (447)
+...+.+++.|+++.++.++.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++++|..|+++|++
T Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 266 DIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88878888999999999999998 99999999999999998888888889999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH
Q 013228 320 ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL 399 (447)
Q Consensus 320 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l 399 (447)
++..++++....+.+.|+++.|+.++.+++++++..++++|.+++..++...... ....++|+..+.+.|+++.|..+
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~l~~l 422 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN--GTGINPYCALIEEAYGLDKIEFL 422 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS--CSCCCHHHHHHHHHHCHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc--ccchhHHHHHHHHcCcHHHHHHH
Confidence 9987677888888899999999999999999999999999999998766532110 01245689999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 013228 400 RSHDNDEIHEKSVKILETYWCGRVAGP 426 (447)
Q Consensus 400 ~~~~~~~v~~~a~~~l~~~~~~~~~~~ 426 (447)
++++++++++.|..++++||+++++++
T Consensus 423 ~~~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 423 QSHENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp HCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HcCCCHHHHHHHHHHHHHHCCcccccC
Confidence 999999999999999999998777654
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.3e-40 Score=320.55 Aligned_cols=364 Identities=28% Similarity=0.405 Sum_probs=319.5
Q ss_pred CcccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 013228 1 MVAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVI 79 (447)
Q Consensus 1 lv~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (447)
||++|.+ +++.+|+.|+|+|.++++++ +++.+.+++.|++|.|+++|++++ +++++.|+|+|++++.++++.+..+.
T Consensus 105 LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 105 FVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3567764 56899999999999999875 777889999999999999999999 99999999999999998899999999
Q ss_pred hCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228 80 DHGAVPIFVKLLASPS-----DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA 154 (447)
Q Consensus 80 ~~~~i~~L~~ll~~~~-----~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (447)
+.|++++|+.++.+++ ..+++.++|++++++.............++++.|+.++ .+.+.+++..++|+|.+++.
T Consensus 183 ~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTS
T ss_pred HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999998743 46788999999999976654444444456789999999 77888999999999999998
Q ss_pred CCCCCCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHH
Q 013228 155 GKPKPIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVV 233 (447)
Q Consensus 155 ~~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~ 233 (447)
....... ....+++|.|+.++.+++..++..++++|+|++..++.....+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7633222 234789999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHH
Q 013228 234 NIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNW 312 (447)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~ 312 (447)
|++.+++.....+.+.|+++.|+.++.++ +..++++|+|+|+|++. ++.+++..+++.|+++.|+++|.++|++++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999999999 99999999999999997 57788899999999999999999999999999
Q ss_pred HHHHHHHhcCC----C-CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 313 AARAISNATFG----G-THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 313 a~~aL~~l~~~----~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
++++|.|+... + .......+.+.|+++.|..+..+++.+++..|..+|.+++...+
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 481 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 481 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999999752 1 23344556678999999999999999999999999999986543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.8e-40 Score=319.28 Aligned_cols=363 Identities=28% Similarity=0.401 Sum_probs=319.1
Q ss_pred ccccc-CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGVW-SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
|++|. ++++.++..|+|+|.++++++ +.....+++.|++|.|+.+|.+++ +++++.|+|+|++++.++++++..+.+
T Consensus 125 v~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~r~~i~~ 202 (529)
T 3tpo_A 125 VSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAFRDLVIK 202 (529)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 55665 456999999999999999885 667788999999999999999999 999999999999999989999999999
Q ss_pred CCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 81 HGAVPIFVKLLASPS-----DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~-----~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
.|++++|+.++..++ ..+.+.++|++++++.+...........++++.|+.++ .+.+.+++..++|+|.+++..
T Consensus 203 ~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 203 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSS
T ss_pred cCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhh
Confidence 999999999998643 46788999999999977654444444556789999999 788899999999999999987
Q ss_pred CCCCCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHH
Q 013228 156 KPKPIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVN 234 (447)
Q Consensus 156 ~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~ 234 (447)
...... ....+++|.|+.++.++++.++..++++|+|++..++.....+.+.|+++.|+.+|.++++.++..|+++|+|
T Consensus 282 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 282 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 361 (529)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 633222 2347899999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHH
Q 013228 235 IAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWA 313 (447)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a 313 (447)
++.+++.....+++.|+++.++.++.++ +..++.+|+|+|+|++. ++++++..+++.|+++.|+++|.++|++++..+
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~ 440 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 440 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHH
Confidence 9999998989999999999999999999 99999999999999987 578888999999999999999999999999999
Q ss_pred HHHHHHhcCC----CC-HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 314 ARAISNATFG----GT-HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 314 ~~aL~~l~~~----~~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
+++|.|+... +. ......+.+.|+++.|..+..+++.+++..|..+|.+++...+
T Consensus 441 L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 500 (529)
T 3tpo_A 441 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 500 (529)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999742 12 3344566788999999999999999999999999999886443
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.3e-39 Score=307.22 Aligned_cols=365 Identities=18% Similarity=0.208 Sum_probs=307.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 119 (447)
.+|.|+++|++++ ++++..|+++|.+++.+++..+..+.+.|+++.|+.+|+++++.++..|+++|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999999 899999999999999877788889999999999999999999999999999999999987889999
Q ss_pred HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc--------c--------CChhHH
Q 013228 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH--------S--------NDKEVM 183 (447)
Q Consensus 120 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~--------~--------~~~~v~ 183 (447)
+.+.|++++++.+|..+.+.++++.++|+|++++... ..+.....+++|.|+.++. + .++.+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999954778899999999999999984 4444333499999999993 2 246677
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCchhHhHHHHHHHHhhcCC-----------------
Q 013228 184 TDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGH------PSPSVLTRALQTVVNIAAGD----------------- 239 (447)
Q Consensus 184 ~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~a~~~l~~l~~~~----------------- 239 (447)
..++|+|+|++.. ++..+.+.+. |+++.|+.+|.+ .+..++..++.++.+++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999987 5666778887 999999999975 45678888888899886311
Q ss_pred ---------------------------------hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH--
Q 013228 240 ---------------------------------DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE-- 284 (447)
Q Consensus 240 ---------------------------------~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~-- 284 (447)
+...+.+++.++++.++.+|.++.++.++..|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 112234556677889999998775789999999999999985422
Q ss_pred -HH-HHHH-HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH------HHHHH
Q 013228 285 -HI-QAVI-DAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP------EIVTV 355 (447)
Q Consensus 285 -~~-~~l~-~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~~~~~ 355 (447)
.. +..+ +.|++|.|++++.+++.+++..|+|+|.|++.. ++ ...++..|+++.|+++|...++ ++...
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 3444 589999999999999999999999999999984 23 3445566899999999998643 68889
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCC
Q 013228 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD-NDEIHEKSVKILETYWCGRV 423 (447)
Q Consensus 356 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~ 423 (447)
++++|.+++..+.. ....+.+.|+++.|.+|+.++ ++++++.|.++|.+||..++
T Consensus 397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999865433 478888999999999999999 99999999999999997665
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-39 Score=317.60 Aligned_cols=362 Identities=15% Similarity=0.114 Sum_probs=311.7
Q ss_pred cccccCC--CHHHHHHHHHHHHHHHccCCCCchhhhh-ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh------
Q 013228 2 VAGVWSD--DNNMQLEATTHIRKLLSNARSAPTEEVI-PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS------ 72 (447)
Q Consensus 2 v~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~------ 72 (447)
+++|.++ |++++..|+++|..++.. ++....++ +.|++|.|+++|++++ +.++..|+++|+|++.+++
T Consensus 383 ~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q~~~~ 459 (810)
T 3now_A 383 RRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLP 459 (810)
T ss_dssp HHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCCCCCC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhhhhhH
Confidence 3456676 889999999999999876 44455555 6799999999999988 8999999999999998542
Q ss_pred -----------------------hhH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCH
Q 013228 73 -----------------------EDT---KVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126 (447)
Q Consensus 73 -----------------------~~~---~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l 126 (447)
..+ +.+++.|+++.|+.++.++++.+++.|+|+|+||+.+ +.++..+.+.|++
T Consensus 460 ~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gai 538 (810)
T 3now_A 460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGV 538 (810)
T ss_dssp SCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHH
T ss_pred HHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCH
Confidence 112 6788999999999999999999999999999999975 5589999999999
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCCh--hhHhhhHHHHHHhhccCCh-hHHHHHHHHHHHhccCCcHHHH
Q 013228 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIF--DQVRPALPALAQLVHSNDK-EVMTDACRALFYLSEGTNDEIQ 202 (447)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~l~~ll~~~~~-~v~~~al~~l~~l~~~~~~~~~ 202 (447)
++|+.+| .+.+...++.|+|+|.+++... +.... ....+++|.|+.+|.++.. ..+..++++|.|++..+++..+
T Consensus 539 p~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 539 KALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999 5566788999999999998754 21111 1235689999999986633 4457899999999998877778
Q ss_pred HHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228 203 AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN-CGALPYLLGLLIHNHKKSIKTDACWTISNITAG 281 (447)
Q Consensus 203 ~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~ 281 (447)
.+++.|+++.|+.++.++++.++..|+++|+|++.+.+.. ..+.+ .|.++.|+.++.++ +..++..|+|+|+|++.+
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-KMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSV 695 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-HHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-HHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999876644 44555 78999999999998 999999999999999997
Q ss_pred CHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC---CHHHHHHHH
Q 013228 282 NSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA---DPEIVTVFL 357 (447)
Q Consensus 282 ~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~~~~~a~ 357 (447)
++..++.+++ .|+++.|+.++.+++.+++..|+|++.|++.. +++....+.+.|+++.|+.++..+ +++++..|+
T Consensus 696 s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al 774 (810)
T 3now_A 696 SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT 774 (810)
T ss_dssp CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHH
Confidence 7888999998 89999999999999999999999999999985 678899999999999999999765 689999999
Q ss_pred HHHHHHHHhhhhhh
Q 013228 358 KGLEKILKVGEAEK 371 (447)
Q Consensus 358 ~~l~~l~~~~~~~~ 371 (447)
++|.++.+.+...+
T Consensus 775 ~aL~~ll~~g~~~~ 788 (810)
T 3now_A 775 QCLAAAERYRIIER 788 (810)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCccC
Confidence 99999998876543
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.5e-39 Score=297.77 Aligned_cols=359 Identities=18% Similarity=0.209 Sum_probs=294.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCC-----------HHHHHHHHHHHHHHcCC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDY-----------PQLQFEAAWALKNIVSG 70 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~-----------~~v~~~a~~~L~~l~~~ 70 (447)
++.+.+.|++ ...+.|..+... .+.+..+++.|++|.|+++|+..+. ++++.+|+|+|.|++.+
T Consensus 38 ~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~ 112 (458)
T 3nmz_A 38 LSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHS 112 (458)
T ss_dssp -------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHcc
Confidence 4566777765 355566666554 4556889999999999999987532 69999999999999998
Q ss_pred ChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhcCChhHHHHHHhcCCH
Q 013228 71 TSEDTKVVIDHGAV----------PIFVKLLASPS--DD-----IRE-------QAVCALGNVAADSARCRDLVLSEEAL 126 (447)
Q Consensus 71 ~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~~~l 126 (447)
.++......+.+++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +.+|+.+.+.|++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l 191 (458)
T 3nmz_A 113 QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGL 191 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHH
T ss_pred CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCH
Confidence 88888888887777 66667676532 22 444 999999999876 7789999999999
Q ss_pred HHHHHHhcc----------ccchhHHHHHHHHHHHhcCCCCCCChhh--HhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228 127 IPLLTQLNK----------HAKLSMLRIATWTLSNFCAGKPKPIFDQ--VRPALPALAQLVHSNDKEVMTDACRALFYLS 194 (447)
Q Consensus 127 ~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~ 194 (447)
++|+.+|.. +.+..+++.|+|+|.+|+.+.+...... ..+++|.|+.+|++++++++..++++|+|++
T Consensus 192 ~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs 271 (458)
T 3nmz_A 192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 271 (458)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 999999942 2356789999999999998763233233 3567999999999999999999999999999
Q ss_pred cC-CcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHhhccCCch---hHH
Q 013228 195 EG-TNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCII-NCGALPYLLGLLIHNHKK---SIK 268 (447)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~---~v~ 268 (447)
.. ++.....+.+.|+++.|+.+| .+.+..++..++.+|+||+.+++.....+. ..|+++.|+.+|.++.+. .++
T Consensus 272 ~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~ 351 (458)
T 3nmz_A 272 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351 (458)
T ss_dssp SSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred cCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence 75 455667788999999999975 567889999999999999985554555565 789999999999877232 599
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 013228 269 TDACWTISNITA---GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345 (447)
Q Consensus 269 ~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 345 (447)
..|+|+|.|++. .++++++.+.+.|+++.|+.+|.+++..+++.|+++|.|++.. ++++...+.+.|+++.|++++
T Consensus 352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHH
Confidence 999999999997 7889999999999999999999999999999999999999964 688899999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh
Q 013228 346 LCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 346 ~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
.++++.+++.|+++|.+|+...
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCC
T ss_pred hCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999764
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8e-39 Score=314.07 Aligned_cols=400 Identities=15% Similarity=0.116 Sum_probs=332.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccC----CHHHHHHhhcCC--CCHHHHHHHHHHHHHHcCCChhhH
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFG----VVPRFVEFLMRE--DYPQLQFEAAWALKNIVSGTSEDT 75 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~----~v~~L~~ll~~~--~~~~v~~~a~~~L~~l~~~~~~~~ 75 (447)
+.++++++..++..|+++|+++.+....+.....++.| +++.++++|.++ + ++++..|+|+|.+++. .++.+
T Consensus 336 ~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~~~vk 413 (810)
T 3now_A 336 KRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-DAECK 413 (810)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-SHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-CcHHH
Confidence 45677888999999999999998643222222233333 467788999888 6 7999999999999999 56666
Q ss_pred HHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-----------------------------hHH---HHHHh
Q 013228 76 KVVI-DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA-----------------------------RCR---DLVLS 122 (447)
Q Consensus 76 ~~~~-~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-----------------------------~~~---~~~~~ 122 (447)
..++ +.|+++.|+.++.++++.++..++++|+||+.+.+ ..+ +.+.+
T Consensus 414 ~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve 493 (810)
T 3now_A 414 EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN 493 (810)
T ss_dssp HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence 6666 57999999999999999999999999999997542 122 56778
Q ss_pred cCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH
Q 013228 123 EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ 202 (447)
Q Consensus 123 ~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~ 202 (447)
.|+++.++.++ .++++.+++.++|+|.|++.+.+........|++|.|+.+|+++++..+..|+|+|.+++...+....
T Consensus 494 aGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 89999999999 67889999999999999997655444444589999999999999999999999999999865433211
Q ss_pred H--HHHhCcHHHHHHhcCCCCc-hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228 203 A--VIEAGVCPRLVELLGHPSP-SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNIT 279 (447)
Q Consensus 203 ~--~~~~~~~~~L~~lL~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~ 279 (447)
. ....++++.|+.+|.++.. ..+..|+++|.||+..++.....+++.|+++.|+.++.++ +..++..|+++++|++
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLV 651 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 0 0123689999999986534 4456899999999999888888899999999999999998 9999999999999998
Q ss_pred cCCHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHH
Q 013228 280 AGNSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR-EGCIKPLCDLLLCADPEIVTVFL 357 (447)
Q Consensus 280 ~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~~~~~a~ 357 (447)
.+. +....+++ .|.++.|+.++.+++..++..|+|+|++++.. ++...+.+++ .|+++.|+.++.+++.+++..++
T Consensus 652 ~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~ 729 (810)
T 3now_A 652 MSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729 (810)
T ss_dssp TSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred CCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence 864 55666665 68999999999999999999999999999975 4677788888 89999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC---CHHHHHHHHHHHHHhcC
Q 013228 358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD---NDEIHEKSVKILETYWC 420 (447)
Q Consensus 358 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~ 420 (447)
+++.|+...+.. ....+.+.|+++.|.+++..+ ++++.+.|.++|+....
T Consensus 730 ~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 730 VIILNMINAGEE-------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHHHTTCHH-------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHH-------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 999999974332 378888999999999997544 79999999999999765
No 12
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.4e-37 Score=303.07 Aligned_cols=394 Identities=16% Similarity=0.163 Sum_probs=335.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++.|+++++.++..|+++|.+++... ......+.+.|++|.|++++.+++ ++++..++.+|.+++.++++.+..+.+.
T Consensus 107 ~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~i~~~ 184 (529)
T 1jdh_A 107 VKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILAS 184 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 56788999999999999999999874 455777778999999999999988 8999999999999999889999999999
Q ss_pred CChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 82 GAVPIFVKLLASP-SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 82 ~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
|+++.|+.++++. +...+..++.+|.+++..+ ..+..+.+.|+++.++.++ .+.+..+++.++|++.+++...+..
T Consensus 185 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~- 261 (529)
T 1jdh_A 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ- 261 (529)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCChhh-
Confidence 9999999999875 4567778899999999754 4678888899999999999 5668899999999999999876332
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHHHHHhhcC
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~ 238 (447)
....+++|.+++++.++++.++..++++|++++..++.....+.+.|+++.|+.++.+ .++.++..++++|++++..
T Consensus 262 -~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 262 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp -SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred -HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 2346899999999999999999999999999998877777889999999999999965 3479999999999999986
Q ss_pred Chh---hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHH
Q 013228 239 DDF---QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR 315 (447)
Q Consensus 239 ~~~---~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~ 315 (447)
++. .+..+.+.|+++.|++++.++.+..++..++|+++|++.+.. ....+.+.|++|.|+.++.++++++|..|+|
T Consensus 341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 419 (529)
T 1jdh_A 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhc
Confidence 543 356788899999999999988346999999999999988644 4578889999999999999888888887776
Q ss_pred HHHH----------------------hcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhh
Q 013228 316 AISN----------------------ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNM 373 (447)
Q Consensus 316 aL~~----------------------l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 373 (447)
++.| ++. .++.+..+.+.|+++.|+.++.+++++++..+.++|.++....
T Consensus 420 ~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~------ 491 (529)
T 1jdh_A 420 GGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK------ 491 (529)
T ss_dssp ------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH------
T ss_pred ccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH------
Confidence 6665 444 3556677889999999999999999999999999999987431
Q ss_pred hhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228 374 DIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418 (447)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (447)
.++..+.+.|+++.|..++++++++|+.+|.++|.++
T Consensus 492 --------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 --------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp --------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1478889999999999999999999999999999875
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=300.00 Aligned_cols=392 Identities=17% Similarity=0.177 Sum_probs=335.0
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
|+++|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ ++++..++.+|.+++..+++.+..+.+
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~i~~ 180 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA 180 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 356788999999999999999999875 556677888999999999999998 899999999999999878999999999
Q ss_pred CCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 81 HGAVPIFVKLLASP-SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 81 ~~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
.|+++.|+.++++. ...++..++.+|.+++... ..+..+.+.|+++.++.++ .+.+..+++.++|+|.+++...+..
T Consensus 181 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~ 258 (644)
T 2z6h_A 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ 258 (644)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGCTTC
T ss_pred cCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcchhh
Confidence 99999999999875 4678899999999999754 4788888999999999999 5668899999999999999876332
Q ss_pred ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CchhHhHHHHHHHHhhc
Q 013228 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP--SPSVLTRALQTVVNIAA 237 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~~l~~ 237 (447)
....+++|.|+.++++.++.++..++++|++++..+......+.+.|+++.|+.++.+. .+.++..|+++|++++.
T Consensus 259 --~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 259 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp --CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 33468999999999999999999999999999988777778889999999999999763 37999999999999997
Q ss_pred CCh---hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCc--------
Q 013228 238 GDD---FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE-------- 306 (447)
Q Consensus 238 ~~~---~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~-------- 306 (447)
..+ .....+.+.++++.|+++|.++.+..+++.++|+|+|++.+.. ..+.+.+.|+++.|+.++.+++
T Consensus 337 ~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~ 415 (644)
T 2z6h_A 337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTS 415 (644)
T ss_dssp SSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHTTC--
T ss_pred CCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchhhhhHhh
Confidence 544 2334577889999999999987447999999999999988654 4478889999999999998744
Q ss_pred --------------hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 013228 307 --------------FDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN 372 (447)
Q Consensus 307 --------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 372 (447)
.+++..++.+|.+++. ++.....+.+.|+++.|+.++.+.+++++..++++|.++....+
T Consensus 416 ~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~---- 489 (644)
T 2z6h_A 416 MGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE---- 489 (644)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHH----
T ss_pred hccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHH----
Confidence 3456667777777776 44666788899999999999999999999999999999875311
Q ss_pred hhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHH
Q 013228 373 MDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415 (447)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l 415 (447)
++..+.+.|+++.|..++.+++++++..|.++|
T Consensus 490 ----------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL 522 (644)
T 2z6h_A 490 ----------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522 (644)
T ss_dssp ----------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ----------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHH
Confidence 478899999999999999999999966544433
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=8.6e-37 Score=290.26 Aligned_cols=386 Identities=17% Similarity=0.213 Sum_probs=313.2
Q ss_pred hhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-
Q 013228 34 EVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD- 112 (447)
Q Consensus 34 ~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~- 112 (447)
.-.+.+.++.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+|+.|+.+|.++++.+++.|+|+|.||+..
T Consensus 43 ~~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred CCcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 3456789999999999998 99999999999999988999999999999999999999999999999999999999985
Q ss_pred ChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc----------------
Q 013228 113 SARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH---------------- 176 (447)
Q Consensus 113 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---------------- 176 (447)
++..+..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|++++.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 57789999999999999999965567889999999999999865 3444445778999999762
Q ss_pred --cCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCchhHhHHHHHHHHhhcCChh------
Q 013228 177 --SNDKEVMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGH------PSPSVLTRALQTVVNIAAGDDF------ 241 (447)
Q Consensus 177 --~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~a~~~l~~l~~~~~~------ 241 (447)
..++.++..+.++|.|++..+++..+.+.+. |+++.|+.++.+ .+...++.|+++|.||+.....
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 2367999999999999998877656677775 667799999853 5677899999999999865211
Q ss_pred -------------------hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH---HHHHHH-HHcCChHHH
Q 013228 242 -------------------QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS---EHIQAV-IDAGLIGPL 298 (447)
Q Consensus 242 -------------------~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~---~~~~~l-~~~~~~~~L 298 (447)
....+.+.++++.++.+|.+..+..+++.|+|+|.|++.+.. ...+.. .+.+++|.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 111222334567788899754489999999999999998642 223333 356889999
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC--------CHHHHHHHHHHHHHHHHhhhhh
Q 013228 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA--------DPEIVTVFLKGLEKILKVGEAE 370 (447)
Q Consensus 299 ~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~~~~~a~~~l~~l~~~~~~~ 370 (447)
+++|.+++..++..|+++|.||+.... ... .+..|+++.|+++|.+. ..+++..++++|.|++..+..
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~- 436 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE- 436 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-
Confidence 999999999999999999999998643 233 34778999999999876 357888999999999865443
Q ss_pred hhhhhhcccccHHHHHHHHhchHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCCCC-CC--CCCCC-CCcccC
Q 013228 371 KNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD--NDEIHEKSVKILETYWCGRVA-GP--QPGNE-GEDALG 437 (447)
Q Consensus 371 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~~-~~--~~~~~-~~~~~~ 437 (447)
....+.+.|+++.|.+++.++ ++.+++.|.++|.++|...+- .. +.|-+ .+|..+
T Consensus 437 ------------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~~~f~~~ 497 (584)
T 3l6x_A 437 ------------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVN 497 (584)
T ss_dssp ------------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCGGGGCCC
T ss_pred ------------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCHHHhccc
Confidence 267788899999999998875 899999999999999976551 11 34444 556544
No 15
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.4e-38 Score=300.12 Aligned_cols=358 Identities=16% Similarity=0.170 Sum_probs=297.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
+|.+|.+++++++..|+++|.+++.++ +.....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++++..+++
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 367889999999999999999998653 444558899999999999999988 999999999999999977999999999
Q ss_pred CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------c-------cchhHHHH
Q 013228 81 HGAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------H-------AKLSMLRI 144 (447)
Q Consensus 81 ~~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------~-------~~~~~~~~ 144 (447)
.|+++.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++.. . .+.++++.
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 999999999999 78999999999999999988 557888888 999999999931 1 35678889
Q ss_pred HHHHHHHhcCCCCCCChhhH-h-hhHHHHHHhhcc------CChhHHHHHHHHHHHhccCC-------------------
Q 013228 145 ATWTLSNFCAGKPKPIFDQV-R-PALPALAQLVHS------NDKEVMTDACRALFYLSEGT------------------- 197 (447)
Q Consensus 145 a~~~L~~l~~~~~~~~~~~~-~-~~l~~l~~ll~~------~~~~v~~~al~~l~~l~~~~------------------- 197 (447)
++|+|+|++.. +....... . |++|.|+.++++ .+..++..++.++.+++...
T Consensus 163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 99999999987 33333333 3 899999999985 46778889999999987321
Q ss_pred -------------------------------cHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChhhH--
Q 013228 198 -------------------------------NDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDFQT-- 243 (447)
Q Consensus 198 -------------------------------~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~-- 243 (447)
+...+.+.+.|+++.++.+|.+ .++.++..|+++|+|++.++....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 0011223445678888899865 568899999999999998764321
Q ss_pred --H-HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCch------hHHHHHH
Q 013228 244 --Q-CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEF------DIKNWAA 314 (447)
Q Consensus 244 --~-~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~------~v~~~a~ 314 (447)
+ .+.+.|+++.|+++|.++ +.+++++|+|+|+|++.+. + .+.++..|+++.|+++|..+++ ++...++
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~-~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-L-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-G-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH-H-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 2 334689999999999999 9999999999999998753 3 4556667899999999997643 6888999
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhh
Q 013228 315 RAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 315 ~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~ 367 (447)
++|.++... +++....+.+.|+++.|++++.++ +++++..|.++|.+++...
T Consensus 399 ~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 399 YTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 999999876 457788888999999999999999 9999999999999988643
No 16
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.3e-37 Score=294.15 Aligned_cols=360 Identities=19% Similarity=0.188 Sum_probs=297.5
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-ChhhHHHHH
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSG-TSEDTKVVI 79 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~ 79 (447)
+|++|.++++.+|..|+++|.+++.+. .+.+..+++.|++|.|+++|++++ +++++.|+++|.+++.+ +++++..++
T Consensus 53 LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 53 VIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 467899999999999999999999764 677888999999999999999999 99999999999999985 689999999
Q ss_pred hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-----------------cccchhH
Q 013228 80 DHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-----------------KHAKLSM 141 (447)
Q Consensus 80 ~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-----------------~~~~~~~ 141 (447)
+.|+|+.|+.+|.+ .+.++++.++++|++|+..+ ..+..+.+ +++++|++++. ...+..+
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 99999999999997 68899999999999999854 46777765 57999999872 1235789
Q ss_pred HHHHHHHHHHhcCCCCCCChhhH--hhhHHHHHHhhcc------CChhHHHHHHHHHHHhccCCcHH-------------
Q 013228 142 LRIATWTLSNFCAGKPKPIFDQV--RPALPALAQLVHS------NDKEVMTDACRALFYLSEGTNDE------------- 200 (447)
Q Consensus 142 ~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~ll~~------~~~~v~~~al~~l~~l~~~~~~~------------- 200 (447)
+++++++|.||+...+.....+. .++++.|+.++++ .+...++.|+++|+|++......
T Consensus 209 ~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 99999999999987643233222 5778899999874 46789999999999999652110
Q ss_pred ------------HHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHhhccCC
Q 013228 201 ------------IQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAAGDDF----QTQCIINCGALPYLLGLLIHNH 263 (447)
Q Consensus 201 ------------~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~~l~~~~ 263 (447)
...+.+.++++.++.+|. +.++.+++.|+++|+||+.+... ....+.+.++++.|+++|.++
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~- 367 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE- 367 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-
Confidence 011223345678888985 56799999999999999987532 223445578899999999999
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------chhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 013228 264 KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--------EFDIKNWAARAISNATFGGTHEQIKYLVRE 335 (447)
Q Consensus 264 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 335 (447)
+..++..|+|+|+||+.+.. . +..+..|++|.|+.+|.++ +.+++..|+++|.|++.. ++++.+.+.+.
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~I~~~ 444 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKKLRET 444 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHC
Confidence 99999999999999998643 2 3455788999999999975 357889999999999876 78899999999
Q ss_pred CChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhh
Q 013228 336 GCIKPLCDLLLCA--DPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 336 ~~l~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~~ 368 (447)
|+++.|+.++.+. .+.+++.|.++|.++..+.+
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 9999999999986 78999999999999987544
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=8.9e-36 Score=289.79 Aligned_cols=365 Identities=24% Similarity=0.309 Sum_probs=323.3
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-hhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS-EDTKVVIDHGAVPIFVKLLASPS-DDIREQAVCALGNVAADSARC 116 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~ 116 (447)
..++.|++.|.+++ ++++..|+++|.+++.... .....++..|+++.|+.+|.+++ +.++..|+|+|++++.+.+..
T Consensus 74 ~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35899999999998 9999999999999976554 66788899999999999999876 999999999999999988888
Q ss_pred HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC-ChhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhc
Q 013228 117 RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP-IFDQVRPALPALAQLV-HSNDKEVMTDACRALFYLS 194 (447)
Q Consensus 117 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~ 194 (447)
+..+.+.|+++.++.+| .+++..++..++|+|.+++...+.. ......++++.|+.++ .+.++.++..++++|++++
T Consensus 153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 6678899999999999999775332 2233468999999999 6778999999999999999
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHH
Q 013228 195 EGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWT 274 (447)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~ 274 (447)
...+.. ......++++.|+.++.++++.++..++++|++++.+.+.....+++.|+++.|+.+|.++ +..++..|+++
T Consensus 232 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRT 309 (528)
T ss_dssp CSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred cCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHH
Confidence 764322 2344579999999999999999999999999999998888878889999999999999999 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHH
Q 013228 275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNA-EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIV 353 (447)
Q Consensus 275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~ 353 (447)
|+|++.+++...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.. +++....+.+.|+++.|+.++.+.+++++
T Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 388 (528)
T 4b8j_A 310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIK 388 (528)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 9999998888888999999999999999988 999999999999999985 67788888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 354 TVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 354 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
..++++|.++...+... ....+.+.|+++.|..++.+++++++..|.++|.+++.
T Consensus 389 ~~a~~aL~nl~~~~~~~------------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 389 KEAAWAISNATSGGSHD------------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHHHSCHH------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHH------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999864322 35667789999999999999999999999998888764
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=4.2e-37 Score=293.60 Aligned_cols=362 Identities=25% Similarity=0.306 Sum_probs=315.9
Q ss_pred cccccCC-CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGVWSD-DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
++.|+++ ++.++..|+++|.+++.+. .+....+++.|+++.|+++|++++ ++++..|+++|++++..+++.+..+.+
T Consensus 70 ~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~ 147 (450)
T 2jdq_A 70 VEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCRDYVLD 147 (450)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 4567777 8999999999999999864 455667788999999999999998 999999999999999988889999999
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228 81 HGAVPIFVKLLAS-PSDDIREQAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158 (447)
Q Consensus 81 ~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 158 (447)
.|+++.|+.++.+ +++.++..++++|++++... +..+..+ ..++++.++.++ .+.+..++..++|+|.+++...+.
T Consensus 148 ~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~ 225 (450)
T 2jdq_A 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPND 225 (450)
T ss_dssp TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHH
T ss_pred CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcH
Confidence 9999999999996 78999999999999999764 3222222 367899999999 677889999999999999986522
Q ss_pred -CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 159 -PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 159 -~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
.......+++|.++.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2222336899999999999999999999999999998887777778888999999999999999999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHH
Q 013228 238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARA 316 (447)
Q Consensus 238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~a 316 (447)
+++.....+++.++++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++..|+++
T Consensus 306 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 384 (450)
T 2jdq_A 306 GNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNG 384 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 8888888888899999999999998 999999999999999975 67888888999999999999999999999999999
Q ss_pred HHHhcCCCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 317 ISNATFGGTH----------EQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 317 L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
|.+++..+.. .....+.+.|+++.|..++.+++++++..++.+|.+++...+
T Consensus 385 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 385 LENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999874322 234677788999999999999999999999999999996443
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.5e-35 Score=286.53 Aligned_cols=371 Identities=23% Similarity=0.282 Sum_probs=324.3
Q ss_pred ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-hhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCh
Q 013228 37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGT-SEDTKVVIDHGAVPIFVKLLASP-SDDIREQAVCALGNVAADSA 114 (447)
Q Consensus 37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~ 114 (447)
..+.++.|++.|++++ ++++..|+++|.++.... ......+++.|+++.|+.+|.++ ++.++..|+|+|++++...+
T Consensus 85 ~~~~i~~lv~~L~s~~-~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp --CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 3467999999999998 899999999999997632 34556788899999999999987 89999999999999999888
Q ss_pred hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228 115 RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL 193 (447)
Q Consensus 115 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l 193 (447)
..+..+...|+++.++.+| .+.+..++..++|+|.+++...+. .......++++.|+.++.+.++.++..++++|+++
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 8888888999999999999 577899999999999999987522 22233478999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHH
Q 013228 194 SEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACW 273 (447)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~ 273 (447)
+.............++++.|+.++.++++.++..++++|++++...+.....+++.|+++.|+.++.++ +..++..|++
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~ 321 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALR 321 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHH
Confidence 976522223455679999999999999999999999999999998887778888999999999999988 9999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHH
Q 013228 274 TISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIV 353 (447)
Q Consensus 274 ~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~ 353 (447)
+|++++.+++...+.+++.|+++.|+.++.++++.++..|+++|++++.. +++....+.+.|+++.|+.++.+++++++
T Consensus 322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 400 (530)
T 1wa5_B 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTK 400 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 99999998888888899999999999999999999999999999999985 56777888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 354 TVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 354 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
..++++|.+++..+... ......+.+.|+++.|..++.+++++++..|.++|.+++..
T Consensus 401 ~~a~~aL~~l~~~~~~~----------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 401 KEACWAISNASSGGLQR----------PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHHHHHTTTC----------THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc----------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999864320 01355666799999999999999999999999999988753
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.9e-35 Score=296.39 Aligned_cols=399 Identities=17% Similarity=0.164 Sum_probs=340.2
Q ss_pred CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
|+++|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ ..++..++.+|.+++..+++.+..+.+
T Consensus 239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~i~~ 316 (780)
T 2z6g_A 239 LVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA 316 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 356788999999999999999999874 555667778999999999999988 899999999999999888999999999
Q ss_pred CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 81 HGAVPIFVKLLASPS-DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
.|+++.|+.++++.+ ...+..++.+|.+|+... ..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+++...+.
T Consensus 317 ~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~- 393 (780)
T 2z6g_A 317 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK- 393 (780)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTT-
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchh-
Confidence 999999999998754 556778899999999754 4677888899999999999 566788999999999999987633
Q ss_pred ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CC-chhHhHHHHHHHHhhc
Q 013228 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PS-PSVLTRALQTVVNIAA 237 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~-~~v~~~a~~~l~~l~~ 237 (447)
.....++++.|+.++++.++.++..++++|++++..++.....+.+.|+++.|+.+|.+ .+ +.++..|+++|++++.
T Consensus 394 -~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 394 -QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp -CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred -hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 22347899999999999999999999999999998887777888889999999999976 33 4899999999999987
Q ss_pred CChh---hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCc--------
Q 013228 238 GDDF---QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE-------- 306 (447)
Q Consensus 238 ~~~~---~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~-------- 306 (447)
.++. ....+.+.++++.|+.+|.++....++..++|+|+|++.+. .....+.+.|+++.|+.++.+++
T Consensus 473 ~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 6543 24567888999999999998834599999999999998754 55578889999999999998644
Q ss_pred --------------hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 013228 307 --------------FDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN 372 (447)
Q Consensus 307 --------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 372 (447)
.+++..++.+|.+++. ++.....+.+.|+++.|+.++.+.++.++..++.+|.++....+
T Consensus 552 ~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~---- 625 (780)
T 2z6g_A 552 MGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE---- 625 (780)
T ss_dssp ------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHH----
T ss_pred hccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH----
Confidence 3456678888888876 56777778899999999999999999999999999999974311
Q ss_pred hhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228 373 MDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGR 422 (447)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (447)
++..|.+.|+++.|..++++++++|+..|.++|.++....
T Consensus 626 ----------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 626 ----------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp ----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred ----------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 4788999999999999999999999888777777665533
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.6e-35 Score=287.03 Aligned_cols=397 Identities=15% Similarity=0.141 Sum_probs=331.5
Q ss_pred cccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
++.|.+ ++++++..|+.+|.+++.. ++....+.+.|+++.|+++|++++ ++++..|+++|.+++..++..+..+.+
T Consensus 65 v~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~ 141 (529)
T 1jdh_A 65 VRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRL 141 (529)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 344544 4899999999999998765 457788889999999999999999 999999999999999977788888989
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.|+++.|+.++.++++.++..++.+|.+++..++..+..+.+.|+++.++.++....+...+..++.+|.+++.......
T Consensus 142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 221 (529)
T 1jdh_A 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999998888889999999999999999766667788889999999997654333
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
.....++++.++.++.++++.++..+++++.+++....... ...++++.|+.++.++++.++..++++|++++..++
T Consensus 222 ~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 33447899999999999999999999999999997654321 123689999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCc-hhHHHHHHH
Q 013228 241 FQTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAGNSE---HIQAVIDAGLIGPLVNLLQNAE-FDIKNWAAR 315 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~~l~~~~-~~v~~~a~~ 315 (447)
.....+.+.|+++.+++++.+. .++.++..++++|+|++..+++ ....+.+.|+++.|+.++.+++ +.++..+++
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~ 378 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHH
Confidence 7888899999999999999863 1479999999999999875433 4567889999999999999876 599999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH----------------------HHHhhhhhhhh
Q 013228 316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK----------------------ILKVGEAEKNM 373 (447)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~----------------------l~~~~~~~~~~ 373 (447)
+|+|++.. ++....+.+.|+++.|+.++.+.+++++..+.|++.+ +....
T Consensus 379 ~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~------ 450 (529)
T 1jdh_A 379 LIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV------ 450 (529)
T ss_dssp HHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH------
T ss_pred HHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc------
Confidence 99999984 3445778899999999999988777777766665554 33211
Q ss_pred hhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 374 DIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
..+..+.+.|+++.|..++.+++++++..|.+.+.++..
T Consensus 451 --------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 451 --------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp --------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred --------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 125668889999999999999999999999999998764
No 22
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=278.07 Aligned_cols=313 Identities=18% Similarity=0.187 Sum_probs=264.5
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCH----------HHHHHhhcCCC-CHH-----HHH-------HHHHHH
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVV----------PRFVEFLMRED-YPQ-----LQF-------EAAWAL 64 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v----------~~L~~ll~~~~-~~~-----v~~-------~a~~~L 64 (447)
++++++++|+|+|.+++++. ++..+...+.|++ +.+++++.+.. +.+ +++ +|+|+|
T Consensus 94 ~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL 172 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVL 172 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHH
Confidence 44799999999999999987 6677777777777 67777777652 122 544 999999
Q ss_pred HHHcCCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhcCChhHHHHHHh-cCCHHHHHHH
Q 013228 65 KNIVSGTSEDTKVVIDHGAVPIFVKLLAS-----------PSDDIREQAVCALGNVAADSARCRDLVLS-EEALIPLLTQ 132 (447)
Q Consensus 65 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~ 132 (447)
.|++. ++++|+.+.+.|++++|+.++.. .++.+++.|+|+|.|||.+++..+..+.. .|++++|+.+
T Consensus 173 ~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~L 251 (458)
T 3nmz_A 173 MKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251 (458)
T ss_dssp HHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHG
T ss_pred HHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHH
Confidence 99987 69999999999999999999941 34789999999999999888777776654 4569999999
Q ss_pred hccccchhHHHHHHHHHHHhcCCC--CCCChhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHH-HhC
Q 013228 133 LNKHAKLSMLRIATWTLSNFCAGK--PKPIFDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVI-EAG 208 (447)
Q Consensus 133 l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~-~~~ 208 (447)
| .+.+.++++.++|+|.+|+... .........|++|.|+++| ++.++.++..++.+|+|++...++....+. ..|
T Consensus 252 L-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G 330 (458)
T 3nmz_A 252 L-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 330 (458)
T ss_dssp G-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT
T ss_pred H-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence 9 6788999999999999999752 1223333479999999974 567899999999999999984444334555 689
Q ss_pred cHHHHHHhcCCCCc----hhHhHHHHHHHHhhc---CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228 209 VCPRLVELLGHPSP----SVLTRALQTVVNIAA---GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG 281 (447)
Q Consensus 209 ~~~~L~~lL~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~ 281 (447)
+++.|+.+|.+.++ .++..|+++|.|++. .++..+..+.+.|+++.|+.+|.++ +..++++|+|+|+|++.+
T Consensus 331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSAR 409 (458)
T ss_dssp HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcC
Confidence 99999999987654 489999999999997 6788888899999999999999998 999999999999999988
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228 282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 282 ~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~ 324 (447)
++++++.+++.|++|.|++++.+++..+++.|+++|.|++...
T Consensus 410 ~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999999999999999999864
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=285.51 Aligned_cols=397 Identities=16% Similarity=0.142 Sum_probs=337.0
Q ss_pred cccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
++.|.+ ++++++..|+.+|.+++.. .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...+..+..+.+
T Consensus 62 v~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~v~~ 138 (644)
T 2z6h_A 62 VRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRL 138 (644)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence 445655 4899999999999988765 457788889999999999999998 999999999999999876778888899
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.|+++.|+.++.++++.++..++.+|.+++...+..+..+.+.|+++.++.++........+..++.+|.+++.......
T Consensus 139 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~ 218 (644)
T 2z6h_A 139 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218 (644)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHH
T ss_pred CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999987788888999999999999999766667888999999999997654444
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
.....++++.++.++.+.+..++..++++|.+++...... ....++++.|+.++.++++.++..++++|++++..++
T Consensus 219 ~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~ 295 (644)
T 2z6h_A 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295 (644)
T ss_dssp HHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 4445789999999999999999999999999999654321 1112679999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhhccCCc-hhHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHHHhcCc-hhHHHHHHH
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHK-KSIKTDACWTISNITAGNS---EHIQAVIDAGLIGPLVNLLQNAE-FDIKNWAAR 315 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~-~~v~~~a~~~l~nl~~~~~---~~~~~l~~~~~~~~L~~~l~~~~-~~v~~~a~~ 315 (447)
..+..+.+.|+++.|+.++.+..+ ..++..++++|+|++...+ .....+.+.|+++.|+++|.+++ +.++..|++
T Consensus 296 ~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~ 375 (644)
T 2z6h_A 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHH
Confidence 888889999999999999987423 7999999999999987433 22334778999999999999764 799999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHhhhhhhhh
Q 013228 316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD----------------------PEIVTVFLKGLEKILKVGEAEKNM 373 (447)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~~~~~a~~~l~~l~~~~~~~~~~ 373 (447)
+|+|++... +....+.+.|+++.|++++.+.+ .+++..++.+|.+++....
T Consensus 376 ~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~----- 448 (644)
T 2z6h_A 376 LIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH----- 448 (644)
T ss_dssp HHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH-----
T ss_pred HHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH-----
Confidence 999999853 34477889999999999987633 3566777888888875432
Q ss_pred hhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 374 DIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
.+..+.+.|+++.|.+++.+++++++..|..+|.++..
T Consensus 449 ---------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 449 ---------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp ---------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 25678789999999999999999999999999888764
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5.8e-34 Score=286.96 Aligned_cols=397 Identities=16% Similarity=0.149 Sum_probs=335.0
Q ss_pred cccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 2 VAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 2 v~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
++.|.+ +++.++..|+.+|.+++.. ......+.+.|+++.|+++|++++ +.++..|+++|.+++...+..+..+.+
T Consensus 198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 198 VRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 345554 4899999999999998765 455778888999999999999998 999999999999999977788888989
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.|+++.|+.++.+++..++..++.+|.+++..++..+..+.+.++++.++.++........+..++.++.+++.......
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 354 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 354 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence 99999999999999999999999999999988888888888999999999999766666777889999999997653333
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
.....++++.|+.++.+.++.++..++++|.+++...... ....++++.|+.++.+.++.++..|+++|++|+..++
T Consensus 355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 3344789999999999999999999999999999655331 1123678999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhhccCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCch-hHHHHHHH
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHK-KSIKTDACWTISNITAGNSE---HIQAVIDAGLIGPLVNLLQNAEF-DIKNWAAR 315 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~-~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~~l~~~~~-~v~~~a~~ 315 (447)
..+..+.+.|+++.|+.+|.+..+ ..++..|+++|+|++...++ ....+.+.++++.|++++.+++. .++..|++
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~ 511 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence 888889999999999999986323 48999999999999875433 23467789999999999998764 99999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHhhhhhhhh
Q 013228 316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD----------------------PEIVTVFLKGLEKILKVGEAEKNM 373 (447)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~~~~~a~~~l~~l~~~~~~~~~~ 373 (447)
+|+|++. .+.....+.+.|+++.|++++.+.+ ++++..++.+|.++.....
T Consensus 512 aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~----- 584 (780)
T 2z6g_A 512 LIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH----- 584 (780)
T ss_dssp HHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH-----
T ss_pred HHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh-----
Confidence 9999997 4455678889999999999987643 3466677888888864321
Q ss_pred hhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 374 DIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
.+..+.+.|+++.|..++.+++++++..|..+|.++..
T Consensus 585 ---------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 622 (780)
T 2z6g_A 585 ---------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622 (780)
T ss_dssp ---------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred ---------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 25678889999999999999999999999999888753
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=1.4e-31 Score=242.27 Aligned_cols=275 Identities=19% Similarity=0.176 Sum_probs=238.4
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCC----------CCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRE----------DYPQLQFEAAWALKNIVSGTSEDTKV 77 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~ 77 (447)
++...+..|+++|.+++.. ++.++.+++.|+++.|+.+|.++ .++.+|..|+++|.+++.+++..+..
T Consensus 44 ~~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3346677999999999976 67899999999999999999521 22689999999999999977778877
Q ss_pred HHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-ChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 78 VIDH-GAVPIFVKLLASPSDDIREQAVCALGNVAAD-SARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 78 ~~~~-~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
+... |+++.|+.+|.++++++++.++|+|+||+.. ++..+..+.+.|++++|+++|..+.+.++++.++++|++|+..
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 7655 5599999999999999999999999999975 5678889999999999999875667889999999999999984
Q ss_pred C-CCCChhh-HhhhHHHHHHhhccCCh----hHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhcCCCCchhHh
Q 013228 156 K-PKPIFDQ-VRPALPALAQLVHSNDK----EVMTDACRALFYLSE---GTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226 (447)
Q Consensus 156 ~-~~~~~~~-~~~~l~~l~~ll~~~~~----~v~~~al~~l~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~ 226 (447)
. ....... ..+++|.|+.+|+++++ +++..++++|+|++. ..++..+.+.+.|+++.|+.+|.+++..+++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 4 2222223 47999999999987654 589999999999996 5666778889999999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHH
Q 013228 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285 (447)
Q Consensus 227 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~ 285 (447)
.|+++|+|++.+++..+..+.+.|+++.|++++.++ +..+++.|+|+|.|++.+.+..
T Consensus 282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999988888889999999999999999998 9999999999999999876553
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=2.2e-31 Score=241.07 Aligned_cols=270 Identities=20% Similarity=0.195 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 013228 54 PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-----------PSDDIREQAVCALGNVAADSARCRDLVLS 122 (447)
Q Consensus 54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 122 (447)
...+.+|+++|.+++. ++++|+.+++.|++++|+.+|.. .++.+++.|+|+|.||+..++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556689999999999 58999999999999999999942 24789999999999999888777777754
Q ss_pred -cCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC--CCCChhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc
Q 013228 123 -EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK--PKPIFDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 123 -~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~ 198 (447)
.|+++.|+.+| .+.+.++++.++|+|.+|+... .........+++|.|+++| ++.++.+++.++.+|+|++...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45599999999 6778899999999999999752 1223333479999999974 66789999999999999998554
Q ss_pred HHHHHHH-HhCcHHHHHHhcCCCCc----hhHhHHHHHHHHhhc---CChhhHHHHHhcCChHHHHHhhccCCchhHHHH
Q 013228 199 DEIQAVI-EAGVCPRLVELLGHPSP----SVLTRALQTVVNIAA---GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTD 270 (447)
Q Consensus 199 ~~~~~~~-~~~~~~~L~~lL~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~ 270 (447)
+....+. ..|+++.|+.+|.++++ .++..|+++|.|++. .++..+..+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 4444555 68999999999987654 489999999999997 6777888899999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCH
Q 013228 271 ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTH 326 (447)
Q Consensus 271 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~ 326 (447)
|+|+|+|++.+++++++.+++.|++|.|++++.+++..+++.|+++|.|++.....
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988889999999999999999999999999999999999999987443
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=6.9e-28 Score=211.17 Aligned_cols=240 Identities=28% Similarity=0.412 Sum_probs=221.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
|.++.|+++|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+.++.++++.++..++++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57899999999999 99999999999999998888999999999999999999999999999999999999999888999
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~ 197 (447)
.+.+.|+++.++.++ .+.+..++..++++|.+++...+. .......++++.++++++++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 677899999999999999965422 222334789999999999999999999999999999888
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
+...+.+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.+++++.++ ++.++..|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 77777889999999999999999999999999999999998888888899999999999999998 99999999999999
Q ss_pred HhcC
Q 013228 278 ITAG 281 (447)
Q Consensus 278 l~~~ 281 (447)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9874
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=8.8e-28 Score=210.44 Aligned_cols=239 Identities=34% Similarity=0.493 Sum_probs=218.8
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~ 118 (447)
...+.++++|++++ ++++..|+++|.++...+++.+..+.+.|+++.|+.++.++++.++..++++|++++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46899999999999 89999999999886665778888999999999999999999999999999999999998888899
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC-ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP-IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~ 197 (447)
.+.+.|+++.++.++ .++++.++..++++|.+++...+.. ......+++|.++.+++++++.++..++++|++++..+
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999876444 33445789999999999999999999999999999888
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
+.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 77778888999999999999999999999999999999988888888899999999999999998 99999999999999
Q ss_pred Hhc
Q 013228 278 ITA 280 (447)
Q Consensus 278 l~~ 280 (447)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 864
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=3.3e-26 Score=200.47 Aligned_cols=249 Identities=28% Similarity=0.428 Sum_probs=226.3
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHH
Q 013228 166 PALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQC 245 (447)
Q Consensus 166 ~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 245 (447)
+.+|.++.+|+++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..++++|++++..++.....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 46899999999999999999999999999888777788899999999999999999999999999999999988888888
Q ss_pred HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 013228 246 IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGT 325 (447)
Q Consensus 246 ~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~ 325 (447)
+.+.|+++.++.++.++ +..++..++++|++++..+++....+.+.|+++.|+.++.++++.++..++++|++++.. +
T Consensus 82 ~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~ 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-P 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-C
T ss_pred HHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-C
Confidence 99999999999999998 999999999999999988888899999999999999999999999999999999999986 5
Q ss_pred HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCH
Q 013228 326 HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDND 405 (447)
Q Consensus 326 ~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~ 405 (447)
+.....+.+.|+++.|+.++.++++.++..++++|.+++...+. ....+.+.|+++.|.+++.++++
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------------~~~~l~~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-------------AIKAIVDAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH-------------HHHHHHHTTHHHHHHHGGGCSCH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH-------------HHHHHHHCCCHHHHHHHHCCCcH
Confidence 66778888999999999999999999999999999999874333 36677789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCC
Q 013228 406 EIHEKSVKILETYWCGRVAGPQPG 429 (447)
Q Consensus 406 ~v~~~a~~~l~~~~~~~~~~~~~~ 429 (447)
++++.|.++|.++......+..++
T Consensus 227 ~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHHHHHHHHHHHTCBCCC---
T ss_pred HHHHHHHHHHHHHHcCCCcccccc
Confidence 999999999999988776665443
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.1e-26 Score=203.41 Aligned_cols=239 Identities=33% Similarity=0.456 Sum_probs=215.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PI 160 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~ 160 (447)
...+.+...|.+++++++..++++|.++....+..+..+.+.|+++.++.+| .+.+..++..++++|.+++...+. ..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4678999999999999999999999876655566677888999999999999 666789999999999999986533 23
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
.....+++|.++.+++++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..++++|++++..++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 33347899999999999999999999999999998887765778999999999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
.....+.+.|+++.|+.++.++ ++.++..++++|+|++..+++....+.+.|+++.|+.++.+++++++..|+++|.++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888889999999999999998 999999999999999988889899999999999999999999999999999999999
Q ss_pred cC
Q 013228 321 TF 322 (447)
Q Consensus 321 ~~ 322 (447)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=8.2e-26 Score=199.10 Aligned_cols=236 Identities=17% Similarity=0.141 Sum_probs=198.6
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh
Q 013228 180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE-LLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL 258 (447)
Q Consensus 180 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~ 258 (447)
.+-+..|+..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++..++..+..+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567778999999997544 4566888999999999 9999999999999999999999999888999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh
Q 013228 259 LIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCI 338 (447)
Q Consensus 259 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l 338 (447)
|+++.+..++..|+|+|+|++.+.+...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.. +++.+..+.+.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643789999999999999998888888899999999999999999999999999999999976 56788899999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 013228 339 KPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD-NDEIHEKSVKILET 417 (447)
Q Consensus 339 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~ 417 (447)
+.|+.+|.+++++++..++.+|.+++........... ...+.+...+++ .++.++.++ +.+++++|..++++
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987543321110 011235555653 466777665 79999999999999
Q ss_pred hcCCCCC
Q 013228 418 YWCGRVA 424 (447)
Q Consensus 418 ~~~~~~~ 424 (447)
||...++
T Consensus 285 ~f~~~~~ 291 (296)
T 1xqr_A 285 CFSSPAD 291 (296)
T ss_dssp HCC----
T ss_pred HcCCCCC
Confidence 9976544
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.1e-24 Score=206.06 Aligned_cols=389 Identities=13% Similarity=0.112 Sum_probs=291.7
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228 7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI 86 (447)
Q Consensus 7 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 86 (447)
++.......+++-+.+.++. ....+..+..++++.|.+++++ +.++..|+-+|..+..........+. ...+.
T Consensus 266 ~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~si~--~La~~ 338 (778)
T 3opb_A 266 EEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCINLK--QLSEI 338 (778)
T ss_dssp SSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHH
T ss_pred cccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHH
Confidence 33334455666666677766 4455666677889999999864 47899999999998763322111111 24566
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH-hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh----
Q 013228 87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVL-SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF---- 161 (447)
Q Consensus 87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---- 161 (447)
+.+.+.+++.+-++.|++.|+.++.+.. .++.+. +.+++..|+.++....+..+...++.++.|++...+....
T Consensus 339 ~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~ 417 (778)
T 3opb_A 339 FINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX 417 (778)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence 7777777666669999999999998766 555555 4566999999996556778999999999999986532100
Q ss_pred ---------------------------------h--hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 013228 162 ---------------------------------D--QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE 206 (447)
Q Consensus 162 ---------------------------------~--~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 206 (447)
. ...|++|.|+.++.++++.++..++++|.+++... .....+++
T Consensus 418 l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~-~~R~~lvq 496 (778)
T 3opb_A 418 XXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK-NFIPQLAQ 496 (778)
T ss_dssp -----------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG-GGHHHHHH
T ss_pred hhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 0 12689999999999999999999999999999664 44567889
Q ss_pred hCcHHHHHHhcCCCCch---hHhHHHHHHHHhhcCChhhHHHHHh----cCChHHHHHhhcc-CCch------------h
Q 013228 207 AGVCPRLVELLGHPSPS---VLTRALQTVVNIAAGDDFQTQCIIN----CGALPYLLGLLIH-NHKK------------S 266 (447)
Q Consensus 207 ~~~~~~L~~lL~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~----~~~l~~l~~~l~~-~~~~------------~ 266 (447)
.|+++.|+.++.+.... .+..|+.+|++++...+... ++. .++++.|+.+|.. +... .
T Consensus 497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l 574 (778)
T 3opb_A 497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574 (778)
T ss_dssp TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence 99999999999876544 89999999999985443221 121 3789999999983 2111 1
Q ss_pred HHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHH-HHHHHc-----
Q 013228 267 IKTDACWTISNITAGN----SEHIQAVIDA-GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI-KYLVRE----- 335 (447)
Q Consensus 267 v~~~a~~~l~nl~~~~----~~~~~~l~~~-~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~----- 335 (447)
-+.+|+.+|.|++..+ ++.++.+++. |+++.|..++.+++..+|+.|+++++|++.. ++.+ ..+.+.
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAAKFFNLENPQS 652 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGGGTSCCSSHHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHhhcCchh
Confidence 2779999999999865 3456778885 9999999999999999999999999999973 3432 233221
Q ss_pred -CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC--CCHHHHHHHH
Q 013228 336 -GCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH--DNDEIHEKSV 412 (447)
Q Consensus 336 -~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~--~~~~v~~~a~ 412 (447)
+.++.|+.++++++.+++.+|.++|.++....+.. ....+...++++.+..+... ++++++.++.
T Consensus 653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i------------a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~ 720 (778)
T 3opb_A 653 LRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI------------AKELLTKKELIENAIQVFADQIDDIELRQRLL 720 (778)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH------------HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH------------HHHHHHccccHHHHHHHHhccCCCHHHHHHHH
Confidence 23789999999999999999999999996543332 13344445899999998777 8999999999
Q ss_pred HHHHHhcC
Q 013228 413 KILETYWC 420 (447)
Q Consensus 413 ~~l~~~~~ 420 (447)
.++.+++.
T Consensus 721 ~~l~NL~~ 728 (778)
T 3opb_A 721 MLFFGLFE 728 (778)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999986
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-24 Score=207.71 Aligned_cols=376 Identities=14% Similarity=0.102 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC-CChHHHH
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH-GAVPIFV 88 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~ 88 (447)
..++..|+..|.++.+.... ....+. .+.+.+.++|.+++ .+.+..|++.|..++. .++.+..+.+. |+++.|+
T Consensus 308 ~~ir~lAavvL~KL~~~~~~-~~~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv 382 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKL-TCINLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILL 382 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTC-TTCCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCC-CcCcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHH
Confidence 57899999999999876422 111111 26788888888877 6679999999999998 67778877766 5699999
Q ss_pred HhhCC-CCHHHHHHHHHHHHHhhcCChh--------------------------------------HHHHHHhcCCHHHH
Q 013228 89 KLLAS-PSDDIREQAVCALGNVAADSAR--------------------------------------CRDLVLSEEALIPL 129 (447)
Q Consensus 89 ~ll~~-~~~~i~~~a~~~L~~l~~~~~~--------------------------------------~~~~~~~~~~l~~l 129 (447)
.++++ .+..+...++.+|.|++...+. .+..+.+.|+++.|
T Consensus 383 ~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~L 462 (778)
T 3opb_A 383 TMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFL 462 (778)
T ss_dssp HHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHH
Confidence 99985 6788999999999999963321 34566788999999
Q ss_pred HHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChh---HHHHHHHHHHHhccCCcHHHHHHHH
Q 013228 130 LTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKE---VMTDACRALFYLSEGTNDEIQAVIE 206 (447)
Q Consensus 130 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~---v~~~al~~l~~l~~~~~~~~~~~~~ 206 (447)
+.++ .+.++.+++.++|+|.+++.+...+......|+++.|+.++.+.... .+..|+.+|.+++...+... .+-.
T Consensus 463 v~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~ 540 (778)
T 3opb_A 463 KREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKK 540 (778)
T ss_dssp HHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSS
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCC
Confidence 9999 67788999999999999998765555555589999999999877544 89999999999995544332 1211
Q ss_pred ---hCcHHHHHHhcCC-CCc-------------hhHhHHHHHHHHhhcCC----hhhHHHHHhc-CChHHHHHhhccCCc
Q 013228 207 ---AGVCPRLVELLGH-PSP-------------SVLTRALQTVVNIAAGD----DFQTQCIINC-GALPYLLGLLIHNHK 264 (447)
Q Consensus 207 ---~~~~~~L~~lL~~-~~~-------------~v~~~a~~~l~~l~~~~----~~~~~~~~~~-~~l~~l~~~l~~~~~ 264 (447)
.|+++.|+.+|.. +.. .-+..|+.+|.||+..+ +..+..++.. |+++.|..++.++ +
T Consensus 541 ~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n 619 (778)
T 3opb_A 541 YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-N 619 (778)
T ss_dssp SCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-S
T ss_pred CccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-C
Confidence 3889999999983 221 12678999999999876 2345667775 8999999999998 9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHH-HHHHHcC------ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-C
Q 013228 265 KSIKTDACWTISNITAGNSEHI-QAVIDAG------LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE-G 336 (447)
Q Consensus 265 ~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~------~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~ 336 (447)
..+|+.|+++++|++.. ++.+ +.+.+.+ .++.|+.++.+++.++|+.|+++|.+++.. .+.....+++. +
T Consensus 620 ~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~~ia~~ll~~~~ 697 (778)
T 3opb_A 620 VPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IPLIAKELLTKKE 697 (778)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHccc
Confidence 99999999999999874 3433 3443222 378899999999999999999999999654 45666777776 7
Q ss_pred ChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC
Q 013228 337 CIKPLCDLLLC--ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH 402 (447)
Q Consensus 337 ~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~ 402 (447)
+++.++.++.+ ++++++..++.++.|++........ ...+..........+.+.+++.+
T Consensus 698 gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~-------~~~~~~~~~~~~l~~~l~~~lk~ 758 (778)
T 3opb_A 698 LIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGT-------NEVYPLLQENQKLKDALNMSLKR 758 (778)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTT-------TSCCHHHHSCHHHHHHHHHHHSS
T ss_pred cHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCC-------hHHHHHHhcChHHHHHHHHHHhC
Confidence 89999999998 8999999999999999975432211 11123333344455556665443
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=6.4e-24 Score=180.37 Aligned_cols=199 Identities=38% Similarity=0.536 Sum_probs=185.8
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 244 (447)
.+..+.+..+++++++.++..++++|.+++..++.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 67788999999999999999999999999988877778899999999999999999999999999999999988888888
Q ss_pred HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 245 ~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~ 324 (447)
.+++.|+++.++.+|.++ +..++..|+|+|+|++..+++..+.+++.|+++.|+.++.++++.++..|+++|.+++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 899999999999999999 999999999999999998888888999999999999999999999999999999999985
Q ss_pred CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228 325 THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 325 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~ 365 (447)
+++....+.+.|+++.|+.++.+++++++..|+++|.++..
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 57778888999999999999999999999999999999853
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=2.1e-23 Score=177.12 Aligned_cols=199 Identities=32% Similarity=0.440 Sum_probs=180.5
Q ss_pred ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228 37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC 116 (447)
Q Consensus 37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~ 116 (447)
..+..+.|+.+|++++ ++++..|+++|.+++.++++.+..+.+.|+++.|+.+|.++++.++..++++|++++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4578999999999999 999999999999999888999999999999999999999999999999999999999888888
Q ss_pred HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC-hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 117 RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI-FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 117 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
+..+.+.|+++.++.+| .+.+..++..++|+|.+++...+... .....+++|.|+.+++++++.++..++++|++++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999 67789999999999999997653322 23347899999999999999999999999999998
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
.++.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 877777888899999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=2.3e-22 Score=177.12 Aligned_cols=239 Identities=14% Similarity=0.098 Sum_probs=192.0
Q ss_pred HHHHHHhhcCCC-----------CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHH
Q 013228 41 VPRFVEFLMRED-----------YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK-LLASPSDDIREQAVCALGN 108 (447)
Q Consensus 41 v~~L~~ll~~~~-----------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~i~~~a~~~L~~ 108 (447)
++..+..|.++. +.+-+..|+..|..++. +.++...+.+.|++++|+. +|.++++.++..|+|+|++
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455666666642 13578899999999998 6778888999999999999 9999999999999999999
Q ss_pred hhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC-hhhHhhhHHHHHHhhccCChhHHHHHH
Q 013228 109 VAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI-FDQVRPALPALAQLVHSNDKEVMTDAC 187 (447)
Q Consensus 109 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~al 187 (447)
++.+++.+++.+.+.|++++|+.+|..+++..+++.|+|+|++++++.+... .....+++|.|+.+|++++..++..++
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~ 188 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999655678999999999999998763322 233468999999999999999999999
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhc--CC---hHHHHHhhccC
Q 013228 188 RALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINC--GA---LPYLLGLLIHN 262 (447)
Q Consensus 188 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~---l~~l~~~l~~~ 262 (447)
|+|++++..+++....+.+.|+++.|+.+|.+++..++..++++|++++...+......... .+ ++.-++-+++.
T Consensus 189 ~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~ 268 (296)
T 1xqr_A 189 FLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 268 (296)
T ss_dssp HHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccch
Confidence 99999998877788889999999999999999999999999999999998865443332221 11 11123333322
Q ss_pred C-chhHHHHHHHHHHHHhc
Q 013228 263 H-KKSIKTDACWTISNITA 280 (447)
Q Consensus 263 ~-~~~v~~~a~~~l~nl~~ 280 (447)
+ ..++...+..++.++..
T Consensus 269 e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 269 EEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp GGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 1 34566666666666643
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=8.5e-22 Score=165.74 Aligned_cols=197 Identities=18% Similarity=0.152 Sum_probs=170.3
Q ss_pred CHHHHHHhhcCCCCH--HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228 40 VVPRFVEFLMREDYP--QLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR 117 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~ 117 (447)
.+|.++++|++++ + +++..|+++|.+++..+++.+..+.+.|+|++|+.+|.++++++++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 6899999999998 6 899999999999998789999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc----------------cCChh
Q 013228 118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH----------------SNDKE 181 (447)
Q Consensus 118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~ 181 (447)
..+.+.|++++|+.+|..+.+.++++.++.+|++|+..... +.....+++|.|+.++. ..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995567889999999999999987533 34445678898887653 13679
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCchhHhHHHHHHHHhhcC
Q 013228 182 VMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGH------PSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 182 v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~a~~~l~~l~~~ 238 (447)
++..+..+|+|++..+++..+.+.+. |+++.|+.+++. .+...++.++.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776666777765 678999999854 3567889999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=165.21 Aligned_cols=192 Identities=18% Similarity=0.203 Sum_probs=161.5
Q ss_pred CcccccCCCH--HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 013228 1 MVAGVWSDDN--NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVV 78 (447)
Q Consensus 1 lv~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 78 (447)
+|++|+++++ +++..|++.+.+++.++ ++....+++.|++|.|+++|++++ +++|+.|+++|.+++.++++++..+
T Consensus 13 lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 13 AVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4678999988 89999999999998764 667788999999999999999988 9999999999999999889999999
Q ss_pred HhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc---------------cccchhHH
Q 013228 79 IDHGAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN---------------KHAKLSML 142 (447)
Q Consensus 79 ~~~~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---------------~~~~~~~~ 142 (447)
.+.|+|+.|+++|. +++.++++.++.+|++|+..+. .+..+.+ +++++|+.++. ...+.+++
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 99999999999998 5789999999999999997655 5666655 46888888652 01256899
Q ss_pred HHHHHHHHHhcCCCCCCChhhH--hhhHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 013228 143 RIATWTLSNFCAGKPKPIFDQV--RPALPALAQLVHS------NDKEVMTDACRALFYLSEG 196 (447)
Q Consensus 143 ~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~ll~~------~~~~v~~~al~~l~~l~~~ 196 (447)
+++..+|.||+...+..+..+. .|+++.|+.+++. .+.+.++.++.+|+||+..
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999986533333332 5788999999884 3678899999999999854
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.82 E-value=6.6e-19 Score=173.53 Aligned_cols=343 Identities=12% Similarity=0.111 Sum_probs=249.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh-HH
Q 013228 39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSAR-CR 117 (447)
Q Consensus 39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~-~~ 117 (447)
.++|.+.+++++++ +.+|..++.+|+.++..... ......+++.+..++.++++.+|..++++|+.++...+. .+
T Consensus 242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 36666777777666 67888888888777652111 112335678888999989999999999999998854321 11
Q ss_pred HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228 118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~ 197 (447)
........++.+..++ .+.++.++..+++++..++.... .......++|.+..++++.++.++..++.++..+....
T Consensus 318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG--KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 1111234566777777 77788999999999998875421 11223568899999999999999999999988887533
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
... .....+++.+..++.++++.+|..++.+++.++...... .....+++.+...+.++ +..+|..|+.+++.
T Consensus 395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK 467 (588)
T ss_dssp CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 221 122357888889999999999999999999987522111 11223577888889888 89999999999999
Q ss_pred HhcC-CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHH
Q 013228 278 ITAG-NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVF 356 (447)
Q Consensus 278 l~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a 356 (447)
++.. +++ .....++|.+..++.++++.+|..++++++.++.....+ .....+++.|..++.+++++++..+
T Consensus 468 l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a 539 (588)
T 1b3u_A 468 LVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNV 539 (588)
T ss_dssp HHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHH
Confidence 9763 222 123448888888888889999999999999997632211 1223578999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228 357 LKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419 (447)
Q Consensus 357 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (447)
++++..+....... +.....++.|..+.++++++|+..|...+..+-
T Consensus 540 ~~~l~~l~~~~~~~----------------~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 540 AKSLQKIGPILDNS----------------TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHGGGSCHH----------------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhchh----------------hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99999998653221 112445677888889999999999999998764
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.81 E-value=2.1e-18 Score=169.96 Aligned_cols=375 Identities=12% Similarity=0.100 Sum_probs=279.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
++++++++.++..|+..|..++...+. ......++|.+..++++++ +.+|..|+.+|..++...+. ......
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~~~ 242 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---EDLEAL 242 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---HHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---HHHHHH
Confidence 345778899999999999998865311 1223457888999998888 89999999999998763222 112234
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh-
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF- 161 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~- 161 (447)
+++.+..++.++++.+|..++.+|+.++..... + ......++.++..+ .++++.++..+++++..++...+....
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E-ITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H-HHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c-cchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 678888888889999999999999999843211 1 12234578888888 678889999999999999876533211
Q ss_pred -hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 162 -DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 162 -~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
.....++|.+..+++++++.++..+++++..++...... .....+++.+..++.++++.+|..++.+++.++....
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence 345778899999999999999999999999887432221 1223578889999999999999999999988875432
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHH
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~ 319 (447)
.. .....+++.+..++.+. +..+|..++.+++.++.. +++ .....++|.+...+.+++..+|..|+.+++.
T Consensus 396 ~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 396 IR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467 (588)
T ss_dssp HH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 11 11234677888888887 999999999999998752 111 1112367888888888899999999999999
Q ss_pred hcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH
Q 013228 320 ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL 399 (447)
Q Consensus 320 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l 399 (447)
++....++. ....+++.|..++.+.+..++..+++++..+....... ......++.|.++
T Consensus 468 l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------------~~~~~~~~~l~~~ 527 (588)
T 1b3u_A 468 LVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLPTVLRM 527 (588)
T ss_dssp HHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHHG
T ss_pred HHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHhh
Confidence 986433321 12347888888888899999999999999998753321 1124567888888
Q ss_pred hcCCCHHHHHHHHHHHHHhcC
Q 013228 400 RSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 400 ~~~~~~~v~~~a~~~l~~~~~ 420 (447)
..+++++|+..+.+.+..++.
T Consensus 528 l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 528 AGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp GGCSCHHHHHHHHHHHHHHGG
T ss_pred CCCCCchHHHHHHHHHHHHHH
Confidence 899999999999999988875
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=1e-18 Score=179.42 Aligned_cols=350 Identities=15% Similarity=0.161 Sum_probs=254.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH--
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVI-- 79 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 79 (447)
++.|.++++.+|..++.++..++....... -.++++.|++.+++++ +.+++.++.+|+.++...+.....-.
T Consensus 96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 96 LNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence 456788889999999999999998742211 1458999999999988 89999999999999874333211100
Q ss_pred --hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC
Q 013228 80 --DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP 157 (447)
Q Consensus 80 --~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (447)
-..+++.+++.+.++++.+|..|++++.++....+...... -...++.+...+ .+.+..++..++++|..++...+
T Consensus 170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~ 247 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRM 247 (852)
T ss_dssp SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCH
T ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCH
Confidence 12356777788888999999999999998886543211000 013466677766 67788999999999999997654
Q ss_pred CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHH---hCcHHHHHHhc-----------CC----
Q 013228 158 KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE---AGVCPRLVELL-----------GH---- 219 (447)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~---~~~~~~L~~lL-----------~~---- 219 (447)
.........+++.+...+.+.++.++..++.++..++...... .... ..+++.++..+ .+
T Consensus 248 ~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~--~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 248 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK--DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH--HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence 3322334678888889999999999999999999998654221 1111 14566676666 33
Q ss_pred -------CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 013228 220 -------PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDA 292 (447)
Q Consensus 220 -------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~ 292 (447)
.++.+|..+..++..++...+.. ++. .+++.+...+.++ ++.+|..|++++++++.+..+...... .
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l-~ 399 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-P 399 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH-H
T ss_pred cccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH-H
Confidence 34567999999999998644322 111 3677888888888 999999999999999987665444333 3
Q ss_pred CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHH-HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHE-QIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
++++.++..+.++++.+|..|++++++++....+. .... -.++++.|+..+.+.++.++..++++|.++++....
T Consensus 400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 47899999999999999999999999998631110 0011 123678888888889999999999999999976543
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=3.3e-18 Score=175.56 Aligned_cols=386 Identities=13% Similarity=0.116 Sum_probs=270.9
Q ss_pred cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 013228 6 WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVP 85 (447)
Q Consensus 6 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 85 (447)
.+.++.+|..|+..|.+..... -.....-.+..+-+.+++.|.+++ +.+|..++.+++.++..... . .-.+.++
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~--~--~wp~ll~ 131 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGEL--Q--NWPDLLP 131 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTT--T--TCTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCc--c--ccHHHHH
Confidence 5678899999999999887642 111111123345667778888887 89999999999999873211 0 1125789
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH----hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL----SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~----~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
.|+..+.++++.+++.++.+|+.++...+.....-. -...++.+++.+ .+++..++..+++++..+....+....
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence 999999999999999999999999865432211000 012345555555 567889999999999988765432212
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
.....+++.+..++.++++.++..+++++..++...+......++ ++++.++..+.+.++.++..|+.++..++....
T Consensus 211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~- 288 (852)
T 4fdd_A 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI- 288 (852)
T ss_dssp TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-
Confidence 233578889999999999999999999999999766544332222 478888888999999999999999999986542
Q ss_pred hHHHHHhc---CChHHHHHhh-----------cc--C--------CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 013228 242 QTQCIINC---GALPYLLGLL-----------IH--N--------HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGP 297 (447)
Q Consensus 242 ~~~~~~~~---~~l~~l~~~l-----------~~--~--------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~ 297 (447)
... .+.. .+++.++..+ .+ . .+..+|..++.++..++...++ .++. .+++.
T Consensus 289 ~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~ 363 (852)
T 4fdd_A 289 CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPL 363 (852)
T ss_dssp HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHH
Confidence 111 2221 3455666665 22 0 1346788999999988763222 1222 36777
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228 298 LVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAI 377 (447)
Q Consensus 298 L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 377 (447)
+...+.++++.+|..|++++++++..... ..... -.++++.+..++.++++.++..+++++.++.........
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----- 436 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP----- 436 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-----
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-----
Confidence 88888888999999999999999987532 22221 134688999999999999999999999999875432110
Q ss_pred ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
..+. .+.++.|.+.+.++++.++..|.+.+.++.+
T Consensus 437 ---~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 437 ---DTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp ---TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ---HHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 0011 2345667777778899999999999998875
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.75 E-value=2e-15 Score=147.87 Aligned_cols=369 Identities=15% Similarity=0.147 Sum_probs=253.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++++++++..++..+..++..++... ++. . .-+++.+.+-|++++ +.+|..|+.+|+++.. ++....
T Consensus 55 i~l~~s~~~~~Krl~yl~l~~~~~~~-~e~---~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~~---- 121 (591)
T 2vgl_B 55 VNCMQTDNLELKKLVYLYLMNYAKSQ-PDM---A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITEY---- 121 (591)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHS-HHH---H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHHH----
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcccC-chH---H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHHH----
Confidence 45678888888888888887776542 111 1 125678888888888 8999999999998863 444433
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC-C
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP-I 160 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~ 160 (447)
+++.+..++.++++.+|..|++++.+++...+.. +...+.++.+..+| .++++.++..|+++|..++...+.. .
T Consensus 122 -l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 122 -LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp -HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred -HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 3577889999999999999999999998755542 22234567788888 7889999999999999999876543 2
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC--
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG-- 238 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~-- 238 (447)
.......++.++..+.+.++-.+...+.++..+...++... ..+++.+..++++.++.++..|++++..+...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 33445667788888888888889999999988885544322 24678888899999999999999999998742
Q ss_pred -ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH------------------HHHH----HH---Hc
Q 013228 239 -DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE------------------HIQA----VI---DA 292 (447)
Q Consensus 239 -~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~------------------~~~~----l~---~~ 292 (447)
+++....+. ..+.+.|+.++ ++ ++.+|..|+.+++.++...++ .+.. +. +.
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~-~~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~ 348 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLL-SG-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQ 348 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHH-HHHHHHHHHHh-cC-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCCh
Confidence 233333222 24556666555 35 777888888887777642111 0111 11 11
Q ss_pred ----CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 293 ----GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 293 ----~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
.+++.|..++.+.+.++|..++++++.++... +..... +++.|++++.+....++..++.++..++...+
T Consensus 349 ~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 349 ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAER-----CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHHH-----HHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 14555666666778889999999999988764 322222 57888888888888888888888888876543
Q ss_pred hhhhhhhhcccccHHHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHHHHhcC
Q 013228 369 AEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR-SHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~ 420 (447)
..+ ..++..|.+.. ....++++..+.|++.+|.+
T Consensus 423 ~~~------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~ 457 (591)
T 2vgl_B 423 NKY------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYAE 457 (591)
T ss_dssp SSC------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred chH------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence 321 12223332322 23456666666666666643
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.75 E-value=1e-14 Score=137.41 Aligned_cols=407 Identities=14% Similarity=0.135 Sum_probs=283.5
Q ss_pred CCHHHHHHHHHHHHHHHccCCCC----------------chhhh-hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 013228 8 DDNNMQLEATTHIRKLLSNARSA----------------PTEEV-IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSG 70 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~-~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 70 (447)
+|.++...++..|.++.+....+ ..+.+ .+.+.++.|+.+|++.+ ..+|..++.+|..++..
T Consensus 74 ~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~vR~~alqlL~~L~~~ 152 (651)
T 3grl_A 74 SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHVRWPGVKLLTSLLKQ 152 (651)
T ss_dssp TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHHHHHHHHHHHHHHhc
Confidence 57788888999998887754221 11233 35678999999999999 89999999999999987
Q ss_pred Chh-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc---chhHHHHH
Q 013228 71 TSE-DTKVVIDH-GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA---KLSMLRIA 145 (447)
Q Consensus 71 ~~~-~~~~~~~~-~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~~~~~a 145 (447)
.++ .++.+... ++++.|+.+|.++.+.+|..++..|.+|+.+++..++.+.-.|+++.++.++.... ...+...+
T Consensus 153 r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DC 232 (651)
T 3grl_A 153 LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDC 232 (651)
T ss_dssp SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHH
T ss_pred CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHH
Confidence 777 77777755 99999999999999999999999999999999999999998999999999995332 23678889
Q ss_pred HHHHHHhcCCCC-CCChhhHhhhHHHHHHhhccCCh------hHHHH---HHHHHHHhccCCc------HHHHHHHHhCc
Q 013228 146 TWTLSNFCAGKP-KPIFDQVRPALPALAQLVHSNDK------EVMTD---ACRALFYLSEGTN------DEIQAVIEAGV 209 (447)
Q Consensus 146 ~~~L~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~------~v~~~---al~~l~~l~~~~~------~~~~~~~~~~~ 209 (447)
+.++.+|.+..+ +.......+++|.|..++..+++ ..... ++.++.-+...+. .....+.+.|+
T Consensus 233 L~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~ 312 (651)
T 3grl_A 233 LILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL 312 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence 999999999873 33333447889999999875432 12333 5666666664422 23456888999
Q ss_pred HHHHHHhcCCC--CchhHhHHHHHHHHhhcCChhhHHHHHhcC---------ChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228 210 CPRLVELLGHP--SPSVLTRALQTVVNIAAGDDFQTQCIINCG---------ALPYLLGLLIHNHKKSIKTDACWTISNI 278 (447)
Q Consensus 210 ~~~L~~lL~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---------~l~~l~~~l~~~~~~~v~~~a~~~l~nl 278 (447)
++.+++++... ...++..|+.+++.+.++++.....+.+.. ++..++.++.+.+...+|..|+.++..+
T Consensus 313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 313 LQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 99999998765 567899999999999999988777776532 2333444565554789999999999999
Q ss_pred hcCCHHHHHHHHHc----------CCh---HHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH--------c--
Q 013228 279 TAGNSEHIQAVIDA----------GLI---GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR--------E-- 335 (447)
Q Consensus 279 ~~~~~~~~~~l~~~----------~~~---~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~-- 335 (447)
..++++....+... +.+ ..+..-+-+.|+--.-.|+.++..+... +++....+.+ .
T Consensus 393 ~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~~l~v~l~~~~ge~~ 471 (651)
T 3grl_A 393 LYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQLLRVQLATSIGNPP 471 (651)
T ss_dssp HTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHHHTTCBCCCCTTCCC
T ss_pred HhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHHHHhCcccccCCCCc
Confidence 98887655555532 011 1234444455554334467777788775 5555444433 1
Q ss_pred -CChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC--C--CHHHHH
Q 013228 336 -GCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH--D--NDEIHE 409 (447)
Q Consensus 336 -~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~--~--~~~v~~ 409 (447)
-.+..+...|.. .++.+...-+..|..-+..+.. .....+.+...++.|.....+ + +.-|+.
T Consensus 472 vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqG 539 (651)
T 3grl_A 472 VSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPFLTGQIAENLGEEEQLVQG 539 (651)
T ss_dssp CBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHHHHHHHHhccCcchHHHHH
Confidence 114444555543 3455444444444443333322 245566655568888876533 2 234788
Q ss_pred HHHHHHHHhcCCCCCCCCC
Q 013228 410 KSVKILETYWCGRVAGPQP 428 (447)
Q Consensus 410 ~a~~~l~~~~~~~~~~~~~ 428 (447)
.+.-+|.-++....++..|
T Consensus 540 L~a~LLGi~yef~~~~~~~ 558 (651)
T 3grl_A 540 LCALLLGISIYFNDNSLET 558 (651)
T ss_dssp HHHHHHHHHHHTCCSCCGG
T ss_pred HHHHHHHHHhhccCCCcCc
Confidence 8999998888766555433
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.73 E-value=6.2e-16 Score=137.09 Aligned_cols=258 Identities=13% Similarity=0.094 Sum_probs=201.8
Q ss_pred hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh
Q 013228 36 IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSAR 115 (447)
Q Consensus 36 ~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~ 115 (447)
...+.++.|++.|.+++ +.+|..|+++|+++.. + +.++.|+.++.++++.+|..++++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 34568999999999988 8999999999999873 2 3578899999999999999999999998754332
Q ss_pred HHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 116 CRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 116 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
... .++.+...+..+++..++..++++|..+....+ .....+++.+..+++++++.++..++++|+++..
T Consensus 88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 123333333367889999999999999974321 1235678999999999999999999999998753
Q ss_pred CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228 196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275 (447)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l 275 (447)
.+.++.|+.++.++++.+|..++++|+.+....+ ..++.+..++.++ ++.+|..++++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 2478999999999999999999999999854333 2456788899888 999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHH
Q 013228 276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVT 354 (447)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~ 354 (447)
+++.. ...++.|+..+.++ +++..|+++|+.+... ..++.|..++.+ .+++++.
T Consensus 217 ~~~~~-----------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~~------------~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 217 SYRKD-----------KRVLSVLCDELKKN--TVYDDIIEAAGELGDK------------TLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHTTC-----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCCG------------GGHHHHHHHHTTSSCCHHHH
T ss_pred HHhCC-----------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCch------------hhhHHHHHHHhcCCCcHHHH
Confidence 99852 23788888888764 4899999999998541 367888888865 5667777
Q ss_pred HHHHHHH
Q 013228 355 VFLKGLE 361 (447)
Q Consensus 355 ~a~~~l~ 361 (447)
.++..+.
T Consensus 272 ~~~~~l~ 278 (280)
T 1oyz_A 272 SAIDKLK 278 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7776654
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=2.1e-15 Score=141.96 Aligned_cols=324 Identities=13% Similarity=0.134 Sum_probs=249.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChh--
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSAR-- 115 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~-- 115 (447)
.++.|+.=+++..-.+-|+.|+..|..++.. ++..+. .++++.|+..|+. .|.++.+.++.+|.++....+.
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 5788888777765578899999999999874 333333 4679999999976 5889999999999887643321
Q ss_pred ---------------HHHH-HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH---hhhHHHHHHhhc
Q 013228 116 ---------------CRDL-VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV---RPALPALAQLVH 176 (447)
Q Consensus 116 ---------------~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~l~~l~~ll~ 176 (447)
+.+. +.+.+.++.|+.+| ...+-.++.+++.+|..++...+......+ .++++.|+.+|.
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL-~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLL-EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHh-cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 1122 34556799999999 778899999999999999988754333322 589999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc----hhHhHHHHHHHHhhcCChhhHHHHHhcCCh
Q 013228 177 SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP----SVLTRALQTVVNIAAGDDFQTQCIINCGAL 252 (447)
Q Consensus 177 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l 252 (447)
++.+.+|..++..|.+++.++.+..+.+.-.|+++.|+.++..... .+...++.++.+|.++++.....+.+.+++
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 9999999999999999999888766656666999999999976443 678889999999999999888999999999
Q ss_pred HHHHHhhccCCch-----hHHHH---HHHHHHHHhcC------CHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHHH
Q 013228 253 PYLLGLLIHNHKK-----SIKTD---ACWTISNITAG------NSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAARA 316 (447)
Q Consensus 253 ~~l~~~l~~~~~~-----~v~~~---a~~~l~nl~~~------~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~a 316 (447)
+.|..++..+.+. ....+ +..++.-++.. ++.+...+.+.|+++.+++++... ...++..|+.+
T Consensus 257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t 336 (651)
T 3grl_A 257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT 336 (651)
T ss_dssp GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 9999999755211 12222 44555555553 234566788999999999998865 57899999999
Q ss_pred HHHhcCCCCHHHHHHHHHcC---------ChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhh
Q 013228 317 ISNATFGGTHEQIKYLVREG---------CIKPLCDLLLCA-DPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 317 L~~l~~~~~~~~~~~l~~~~---------~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~ 369 (447)
++.+... ++.....+.... ++..|..++.+. ..+++.+++.++..++...+.
T Consensus 337 la~~irg-N~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 337 VSEVIRG-CQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHTT-CHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhC-CHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 9998886 566666666533 233455556554 468999999999999976654
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=6.1e-16 Score=151.45 Aligned_cols=325 Identities=14% Similarity=0.114 Sum_probs=204.8
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
.+++.++++.+|..|+.++.++.... ++. +.+.+.++.+.++|.+++ +.|+..|+.+|..++..+++........
T Consensus 127 ~~~L~d~~~~VRk~A~~al~~i~~~~-p~~---~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~~l~~ 201 (591)
T 2vgl_B 127 RKCLKDEDPYVRKTAAVCVAKLHDIN-AQM---VEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLLDLNP 201 (591)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHHSS-CCC---HHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSCCCHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhhC-hhh---cccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccchhccH
Confidence 35678899999999999999998864 332 223468899999999888 9999999999999998665331000111
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---CC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---PK 158 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~ 158 (447)
+.+..|+..+.+.++-.+...+.+++.++..++.... ..++.+...+ ++.+..++..|++++.++.... +.
T Consensus 202 ~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~~~~~ 275 (591)
T 2vgl_B 202 QNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRL-SHANSAVVLSAVKVLMKFLELLPKDSD 275 (591)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCCBTTB
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccCCCHH
Confidence 2356677777777888888999999998865543222 2356666666 6778899999999999997532 22
Q ss_pred CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
........+.+.++.++ ++++.++..++.++..+....+.... ..+..+. .+.+++..+|..++.++..++..
T Consensus 276 ~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~ 348 (591)
T 2vgl_B 276 YYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILK-----QEIKVFF-VKYNDPIYVKLEKLDIMIRLASQ 348 (591)
T ss_dssp SHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTS-CCTTSCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHH-----HHHHhhe-eccCChHHHHHHHHHHHHHHCCh
Confidence 22222356667777665 47899999999999988854332211 0111111 11233367777777777777643
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHH
Q 013228 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS 318 (447)
Q Consensus 239 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~ 318 (447)
.. .. .+++.|...+.+. +.++|..++++++.++...+.... ..++.|++++......++..+..++.
T Consensus 349 ~n--v~-----~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~ 415 (591)
T 2vgl_B 349 AN--IA-----QVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIR 415 (591)
T ss_dssp ST--HH-----HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hh--HH-----HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 32 22 1344566667666 777777777777777765443222 24455666666555566666665665
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHH
Q 013228 319 NATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKI 363 (447)
Q Consensus 319 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l 363 (447)
++..... + ....++..|.+.+++ .+++++..++|+++.+
T Consensus 416 ~ii~~~p-~-----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 416 DIFRKYP-N-----KYESIIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp HHHHHSC-S-----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred HHHHHCc-c-----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 5543211 0 012344455555542 3445555555555544
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.68 E-value=1e-14 Score=129.25 Aligned_cols=257 Identities=14% Similarity=0.105 Sum_probs=196.5
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228 79 IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158 (447)
Q Consensus 79 ~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 158 (447)
...+.++.|+..|.++++.+|..++++|+++.. + +.++.++..+ .+++..++..++++|..+.....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~~~- 86 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFC-SDKNYIRRDIGAFILGQIKICKK- 86 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCTT-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHH-cCCCHHHHHHHHHHHHHhccccc-
Confidence 345789999999999999999999999999862 2 2477888888 77888999999999999864321
Q ss_pred CChhhHhhhHHHHHH-hhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 159 PIFDQVRPALPALAQ-LVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 159 ~~~~~~~~~l~~l~~-ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
....+++.+.. +++++++.++..++++|+++....+.. ....++.|...+.++++.+|..++.+|+++..
T Consensus 87 ----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 87 ----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp ----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 12335555553 567889999999999999987433221 12457889999999999999999999997653
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228 238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317 (447)
Q Consensus 238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL 317 (447)
...++.|+.++.++ ++.+|..++++|+.+....+. .++.|..++.++++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 24789999999998 999999999999998644443 567788889999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHH
Q 013228 318 SNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIE 397 (447)
Q Consensus 318 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 397 (447)
+++.. ...++.|...+.+++ ++..+..+|..+-. ...++.|.
T Consensus 217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------------------~~~~~~L~ 258 (280)
T 1oyz_A 217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------------------KTLLPVLD 258 (280)
T ss_dssp HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------------------GGGHHHHH
T ss_pred HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------------------hhhhHHHH
Confidence 99862 236788888887754 77788888777521 13355666
Q ss_pred HHh-cCCCHHHHHHHHHHHH
Q 013228 398 NLR-SHDNDEIHEKSVKILE 416 (447)
Q Consensus 398 ~l~-~~~~~~v~~~a~~~l~ 416 (447)
.++ .++++++...+...+.
T Consensus 259 ~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 259 TMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHTTSSCCHHHHHHHHHHT
T ss_pred HHHhcCCCcHHHHHHHHHhh
Confidence 665 4566777777776664
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.65 E-value=1e-14 Score=143.22 Aligned_cols=355 Identities=13% Similarity=0.091 Sum_probs=250.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
+-|+++++.++..|+++|.++... .+. ..+++.+.+++.+++ +.||..|+.++.++...+++... +
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~-----~ 179 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME-----M 179 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG-----G
T ss_pred HhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH-----H
Confidence 346778888888888888887632 122 246888999999998 99999999999999886665432 6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------------ccchhHHHHHHHH
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------------HAKLSMLRIATWT 148 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------------~~~~~~~~~a~~~ 148 (447)
+++.+..++.++++.++..|+.+|..++..++.....+ ...++.++..|.. ..++-.+...+.+
T Consensus 180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~ 257 (618)
T 1w63_A 180 FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL 257 (618)
T ss_dssp GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence 77888899999999999999999999997765432233 2568888887743 2366777888899
Q ss_pred HHHhcCCCCCCChhhHhhhHHHHHHhhc------cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc
Q 013228 149 LSNFCAGKPKPIFDQVRPALPALAQLVH------SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP 222 (447)
Q Consensus 149 L~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 222 (447)
+..++...+ .......+.|..++. +.+..+...+++++..+... +. +. ..++..|..++.++++
T Consensus 258 L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~-~~a~~~L~~~L~~~d~ 327 (618)
T 1w63_A 258 LRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LR-VLAINILGRFLLNNDK 327 (618)
T ss_dssp HHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HH-HHHHHHHHHHHTCSST
T ss_pred HHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HH-HHHHHHHHHHHhCCCC
Confidence 999886542 122334444545443 34568899999999987642 21 11 1356788888999999
Q ss_pred hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228 223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302 (447)
Q Consensus 223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l 302 (447)
.+|..|+.+|+.++...+.. +. .....++..+.++ +..+|..|..++..++... +... +++.+...+
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l 394 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGN--NIRG-----MMKELLYFL 394 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHH
Confidence 99999999999998755432 22 3566788889988 9999999999999998742 1222 356788888
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccH
Q 013228 303 QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQ 382 (447)
Q Consensus 303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 382 (447)
.+.+.+++..++.+|+.++....+.. .. .++.|++++......+...++..+..++...+..+
T Consensus 395 ~~~d~e~r~~~v~~I~~la~k~~~~~-~~-----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~----------- 457 (618)
T 1w63_A 395 DSCEPEFKADCASGIFLAAEKYAPSK-RW-----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH----------- 457 (618)
T ss_dssp HHCCHHHHHHHHHHHHHHHHSSCCCH-HH-----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH-----------
T ss_pred HhCCHHHHHHHHHHHHHHHHHhCccH-HH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH-----------
Confidence 88899999999999999997532222 22 36777788877665566666667777776544321
Q ss_pred HHHHHHHhchHHHHHHHhc--CCCHHHHHHHHHHHHHhcC
Q 013228 383 YAQLVEEAEGLEKIENLRS--HDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 383 ~~~~i~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~ 420 (447)
. .++..|..+.. ...+.+...+.|++.+|.+
T Consensus 458 --~-----~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 458 --A-----YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp --H-----HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred --H-----HHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 1 11222333322 1334455678999999864
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.64 E-value=4.3e-14 Score=145.54 Aligned_cols=343 Identities=15% Similarity=0.200 Sum_probs=234.3
Q ss_pred CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-hhHHHHHhCCChHHH
Q 013228 9 DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS-EDTKVVIDHGAVPIF 87 (447)
Q Consensus 9 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L 87 (447)
++.++..|..+|..++...+. .++ ..+++.+.+.+++++ +.+|+.|+++++.++.+.. +.....+. .+++.+
T Consensus 344 ~~~~r~~a~~~L~~l~~~~~~----~~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l 416 (861)
T 2bpt_A 344 DWNVSMSAGACLQLFAQNCGN----HIL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSI 416 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHGG----GGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHccH----hHH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHH
Confidence 457888888899888765311 111 235677777788888 8999999999999997542 32222332 478889
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChhH---HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC----CCC
Q 013228 88 VKLLASPSDDIREQAVCALGNVAADSARC---RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP----KPI 160 (447)
Q Consensus 88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~~ 160 (447)
+..+.++++.+|..++++++.++...... ... -...++.++..+ .+. +.++..+++++.+++.... ...
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l 492 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPI 492 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhh
Confidence 99999999999999999999998431110 000 112366777777 333 7899999999999886532 222
Q ss_pred hhhHhhhHHHHHHhhccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC---------------CCch
Q 013228 161 FDQVRPALPALAQLVHSND--KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH---------------PSPS 223 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---------------~~~~ 223 (447)
......+++.++..+.+.+ +.++..++.+++.++............ .+++.++..+.+ ....
T Consensus 493 ~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~ 571 (861)
T 2bpt_A 493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQE 571 (861)
T ss_dssp GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHH
Confidence 2345778888889988544 789999999999998654433222222 355555555532 1345
Q ss_pred hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCch-hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228 224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKK-SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l 302 (447)
++..++.++++++...+....... ..+++.+...+.+. +. .++..++++++.++..........+.. ++|.+...+
T Consensus 572 ~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l 648 (861)
T 2bpt_A 572 LQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKAL 648 (861)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHh
Confidence 677899999998865443211111 14667788888777 56 899999999999886322222233333 788899999
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC--HHHHHHHHHHHHHHHHhhh
Q 013228 303 QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD--PEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~a~~~l~~l~~~~~ 368 (447)
..+++.++..++.++..++.........++ ..+++.+...+.+.+ ++++..++.++..++....
T Consensus 649 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 649 NQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred ccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 888889999999999988865432222222 235777778887754 7899999999999987654
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=8.5e-15 Score=139.65 Aligned_cols=385 Identities=12% Similarity=0.079 Sum_probs=262.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHH----
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDTKV---- 77 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~---- 77 (447)
..+.++|..+|..|-..|.++...+ ..+.+..|..++.+++ ++.+|..|+..|.++..........
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 4567889999999999998865421 1235677788887652 4899999999999987643111100
Q ss_pred -H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc--chhHHHHHHHH
Q 013228 78 -V------IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA--KLSMLRIATWT 148 (447)
Q Consensus 78 -~------~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~~a~~~ 148 (447)
. ....+-..++..+.++++.+ ..++.+++.++....... .-.+.++.++..+ .+. +..++..++.+
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 0 11123355777788777778 889999999874321100 0134678888888 445 78899999999
Q ss_pred HHHhcCCC-CCCChhhHhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCCchh
Q 013228 149 LSNFCAGK-PKPIFDQVRPALPALAQLVHSN--DKEVMTDACRALFYLSEGTNDEIQ-AVIEAGVCPRLVELLGHPSPSV 224 (447)
Q Consensus 149 L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~v 224 (447)
+..++... +.........+++.+...+.++ ++.++..+++++.++......... .....-+++.+...+.++++.+
T Consensus 154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence 99998753 2222334467888899999887 789999999999987643322111 0111124667777788889999
Q ss_pred HhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH--------------------
Q 013228 225 LTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE-------------------- 284 (447)
Q Consensus 225 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~-------------------- 284 (447)
+..++.++..++...+......+..++++.++..+.+. +..++..++..+..++.....
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence 99999999999865543322222225677777788777 899999999999888753111
Q ss_pred -HHHHHHHcCChHHHHHHHhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHH
Q 013228 285 -HIQAVIDAGLIGPLVNLLQN-------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVF 356 (447)
Q Consensus 285 -~~~~l~~~~~~~~L~~~l~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a 356 (447)
..+... ..++|.++..+.. +++.+|..|..+|..++......... .+++.+...+.+.++.++..+
T Consensus 313 ~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~~r~aa 386 (462)
T 1ibr_B 313 FYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAA 386 (462)
T ss_dssp CHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChHHHHHH
Confidence 011111 2256666666643 24578999999999987643322222 357788888999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 357 LKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 357 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
+.++..+........ +...+ ...++.+...+.++++.|+..|.+.+.++...
T Consensus 387 l~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999986432110 01111 45678888899999999999999999998763
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.62 E-value=2.4e-14 Score=147.64 Aligned_cols=267 Identities=19% Similarity=0.212 Sum_probs=188.7
Q ss_pred cccCC--CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 4 GVWSD--DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 4 ~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
.+.++ ++.++..|+.++..++..-............+++.+...+.+++ ++++..++++|..++...++.....+..
T Consensus 180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 258 (876)
T 1qgr_A 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMGP 258 (876)
T ss_dssp HHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHHHHTT
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45555 68899999999999875421100011111236777778877777 8999999999999987555554444545
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh----------------------HHHHHHhcCCHHHHHHHhcc----
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSAR----------------------CRDLVLSEEALIPLLTQLNK---- 135 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~----------------------~~~~~~~~~~l~~l~~~l~~---- 135 (447)
.+++.++..+.+.++.++..++.++..++..... .+..+ ...++.++..+..
T Consensus 259 ~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~l~~~~~d 336 (876)
T 1qgr_A 259 ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQTLTKQDEN 336 (876)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHHhhccccc
Confidence 7788888888888999999999999998743210 00011 1235566666642
Q ss_pred --ccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHH
Q 013228 136 --HAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPR 212 (447)
Q Consensus 136 --~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~ 212 (447)
+.+..++..+..++..++...+ ......+++.+...+.++++.++..++++++.++.... +...... ..+++.
T Consensus 337 ~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~ 412 (876)
T 1qgr_A 337 DDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPT 412 (876)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHH
Confidence 2346788889999988886543 13356788888888899999999999999999997654 3333222 357899
Q ss_pred HHHhcCCCCchhHhHHHHHHHHhhcCChhhH--HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 213 LVELLGHPSPSVLTRALQTVVNIAAGDDFQT--QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 213 L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
++..+.++++.+|..|++++++++...+... ...+ ..+++.++..+.+ ++.++..+++++++++.
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543210 0011 1356677777765 37889999999999875
No 53
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.61 E-value=1.1e-14 Score=149.82 Aligned_cols=396 Identities=11% Similarity=0.116 Sum_probs=259.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HHHHhC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT-KVVIDH 81 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~ 81 (447)
+.++++++..+..|++++..++.+.......... ..+++.+++.+.+++ +.+|..++++++.++....... ..-.-.
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 453 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQQHLP 453 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 3467888999999999999998653112222222 247888999999888 9999999999999886211100 000011
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-----hhHHHHHHhcCCHHHHHHHhcc-ccchhHHHHHHHHHHHhcCC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADS-----ARCRDLVLSEEALIPLLTQLNK-HAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~ 155 (447)
.+++.++..+.++ +.++..+++++.+++... ......+ ...++.++..+.. +.+..++..++.++..++..
T Consensus 454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 3567788888765 999999999999987431 1111111 1235667777743 33478899999999999877
Q ss_pred CCCCChhhHhhhHHHHHHhhccC---------------ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC
Q 013228 156 KPKPIFDQVRPALPALAQLVHSN---------------DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP 220 (447)
Q Consensus 156 ~~~~~~~~~~~~l~~l~~ll~~~---------------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 220 (447)
.+.........++|.++..+... ...++..++.++.+++........... ..+++.+...+.+.
T Consensus 531 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~ 609 (861)
T 2bpt_A 531 ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK 609 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC
Confidence 65444444567777777766531 345778889999888854433211111 24677788888777
Q ss_pred Cc-hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 013228 221 SP-SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299 (447)
Q Consensus 221 ~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~ 299 (447)
+. .++..++.+++.++..........+. .+++.+...+.++ +..++..++.+++.++....+...... ..+++.++
T Consensus 610 ~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~ 686 (861)
T 2bpt_A 610 DSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLA 686 (861)
T ss_dssp TGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHHHHHHH
Confidence 66 89999999999998644333222222 4778888888776 888999999999998874333333333 23778888
Q ss_pred HHHhcCc--hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC-----------HHHHHHHHHHHHHHHHh
Q 013228 300 NLLQNAE--FDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD-----------PEIVTVFLKGLEKILKV 366 (447)
Q Consensus 300 ~~l~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-----------~~~~~~a~~~l~~l~~~ 366 (447)
..+.+++ .++|..++.+++.++.........++- .+++.+...+.... ..++..+++++..++..
T Consensus 687 ~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888654 889999999999998753333333332 25777777776431 35778888888888864
Q ss_pred hhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC----CHHHHHHHHHHHHHhcC
Q 013228 367 GEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD----NDEIHEKSVKILETYWC 420 (447)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~ 420 (447)
..... ..+...+ ...++.+.....+. +.+++..|..++..+..
T Consensus 765 l~~~~---------~~~~~~~--~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 765 LHDKP---------EALFPYV--GTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp TTTCH---------HHHGGGH--HHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HccCH---------HHHHHHH--HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 32110 0011111 12234444444442 78899999999988765
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.58 E-value=1.4e-13 Score=135.21 Aligned_cols=321 Identities=13% Similarity=0.117 Sum_probs=230.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
+.+.+.++.++..|+.++.++.... ++.. .+.++.+..++.+++ +.|+..|+.+|..++..+++....+. .
T Consensus 149 ~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~~~~--~ 219 (618)
T 1w63_A 149 KLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLAHFR--K 219 (618)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHHHHH--T
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHHHHH--H
Confidence 4678899999999999999999864 3222 257888889998888 99999999999999986555433332 5
Q ss_pred ChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-----cccchhHH
Q 013228 83 AVPIFVKLLAS---------------PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-----KHAKLSML 142 (447)
Q Consensus 83 ~i~~L~~ll~~---------------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~~~~ 142 (447)
.++.++..|.+ .++-.+..++.+|+.++..++...+ ...+.+..++. ++.+..+.
T Consensus 220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~ 294 (618)
T 1w63_A 220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAIL 294 (618)
T ss_dssp THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHH
Confidence 67878776642 4788889999999999987664322 23444444442 22356788
Q ss_pred HHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc
Q 013228 143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP 222 (447)
Q Consensus 143 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 222 (447)
..+++++..+... ......+++.+..++.++++.++..++.+|..+....+.. + ......++..+.+++.
T Consensus 295 ~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~d~ 364 (618)
T 1w63_A 295 YETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDLDV 364 (618)
T ss_dssp HHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSSCH
T ss_pred HHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCCCh
Confidence 8899999887532 2223457788899999999999999999999998543321 1 2456788899999999
Q ss_pred hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228 223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302 (447)
Q Consensus 223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l 302 (447)
.+|..++.++..++.... ... +++.+...+.+. +.++|..++.+++.++...+..... .++.+++++
T Consensus 365 ~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~-----~v~~ll~lL 431 (618)
T 1w63_A 365 SIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRW-----HIDTIMRVL 431 (618)
T ss_dssp HHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHH-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHH-----HHHHHHHHH
Confidence 999999999999987543 122 346777888777 8999999999999998742221111 367788888
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 013228 303 QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC--ADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~ 366 (447)
......++..+...+..+.... ++.... ++..|+..+.+ ....+...++|+++.+...
T Consensus 432 ~~~~~~v~~~~~~~l~~ii~~~-p~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 432 TTAGSYVRDDAVPNLIQLITNS-VEMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp HHTGGGSCSSHHHHHHHHHHHS-CSTHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred HhccchhHHHHHHHHHHHHhcC-hhHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence 8776667777777777776542 222222 35566666654 3345556788999888753
No 55
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.58 E-value=7.8e-14 Score=148.73 Aligned_cols=403 Identities=12% Similarity=0.085 Sum_probs=263.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
+..+.++|+++|..|...|.+..... ......-....+++.+++.+.+++ +.+|..|+.+|+.++...++ ..+ .
T Consensus 12 L~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~~~--~ 85 (1230)
T 1u6g_C 12 LEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--YQV--E 85 (1230)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--HHH--H
T ss_pred HHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--HHH--H
Confidence 35678999999999999999877653 111111122347888999998877 89999999999999874433 111 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH------HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARC------RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~------~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
.+++.++..+.++++.+|..++.+|+.++...... .... -...++.++..+..+.+..++..++.++..++..
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 35678888888888899999999999988433221 0111 1235788888884357788999999999999864
Q ss_pred CCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-CchhHhHHHHHHHH
Q 013228 156 KPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP-SPSVLTRALQTVVN 234 (447)
Q Consensus 156 ~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~~ 234 (447)
.+.........+++.+...+.++++.++..++.++..++...+.. + -..+++.++..+.+. ++.++..++.+++.
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 322222345778888999999999999999999999999765432 1 124577777777543 35788889999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----------
Q 013228 235 IAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ----------- 303 (447)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~----------- 303 (447)
++...+...... -..+++.++..+.+. ++.+|..+..++..++...++.....+. .+++.++..+.
T Consensus 241 l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~ 317 (1230)
T 1u6g_C 241 ISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDED 317 (1230)
T ss_dssp HHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC---------
T ss_pred HHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccc
Confidence 886544322111 136788889999887 8899999999999888632221111111 12333322221
Q ss_pred --------------------------cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228 304 --------------------------NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL 357 (447)
Q Consensus 304 --------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~ 357 (447)
+..+.+|..|+.++..++..........+ ..+++.+...+.+.++.++..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~Vr~~a~ 395 (1230)
T 1u6g_C 318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENVKADVF 395 (1230)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHHHHHHH
T ss_pred cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHHHHHHH
Confidence 11245789999999998874322122222 35678888888888899999999
Q ss_pred HHHHHHHHhhhhhhhhhh-hc-c----cccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 358 KGLEKILKVGEAEKNMDI-AI-G----DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 358 ~~l~~l~~~~~~~~~~~~-~~-~----~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
.++..++........... .. . ........+. ...++.+.+.+.++++.++..+...+..+...
T Consensus 396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 999988864321000000 00 0 0000011111 23455666667788888888888887776543
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.57 E-value=1.6e-13 Score=141.65 Aligned_cols=400 Identities=13% Similarity=0.139 Sum_probs=253.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh---HHHHH
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSED---TKVVI 79 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~ 79 (447)
..+.++++.++..|++++..++.+..+....... ..+++.++..+++++ +.+|..|++++++++...+.. ...+
T Consensus 373 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~l- 449 (876)
T 1qgr_A 373 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAINDVYL- 449 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSSTTTH-
T ss_pred HHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcccHHHH-
Confidence 4567889999999999999998764212222222 347899999999888 899999999999998743321 1111
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh---------------hHHHHHHhcCCHHHHHHHhcccc--chhHH
Q 013228 80 DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA---------------RCRDLVLSEEALIPLLTQLNKHA--KLSML 142 (447)
Q Consensus 80 ~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~l~~l~~~l~~~~--~~~~~ 142 (447)
..+++.++..+.++ +.++..++++|.+++.... .....+ ...++.++..+.... +..++
T Consensus 450 -~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 450 -APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp -HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHH
T ss_pred -HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHH
Confidence 14567788888774 8999999999999984311 000011 123556666664321 35677
Q ss_pred HHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-----------CC----hhHHHHHHHHHHHhccCCc-HHHHHHHH
Q 013228 143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS-----------ND----KEVMTDACRALFYLSEGTN-DEIQAVIE 206 (447)
Q Consensus 143 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----------~~----~~v~~~al~~l~~l~~~~~-~~~~~~~~ 206 (447)
..+..++..++...+.........++|.++..+.. .+ +.++..++.++..++.... .......
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~- 604 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS- 604 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-
T ss_pred HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-
Confidence 88888888888776544445556777777766542 12 4567788999999887655 3332222
Q ss_pred hCcHHHHHHhcCCCC--chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH
Q 013228 207 AGVCPRLVELLGHPS--PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE 284 (447)
Q Consensus 207 ~~~~~~L~~lL~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~ 284 (447)
..+++.++..+.+.. +.++..++.+++.++..........+. .+++.+...+.+..+..+|..++++++.++.....
T Consensus 605 ~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 683 (876)
T 1qgr_A 605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS 683 (876)
T ss_dssp HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 357788888887764 478999999999998643222121222 35677888887654688999999999999863222
Q ss_pred HHHHHHHcCChHHHHHHHhc--CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC----H-------H
Q 013228 285 HIQAVIDAGLIGPLVNLLQN--AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD----P-------E 351 (447)
Q Consensus 285 ~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----~-------~ 351 (447)
.....+. .+++.++..+.+ .+.+++..+++++++++....++...++ ..+++.+...+.... + .
T Consensus 684 ~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~ 760 (876)
T 1qgr_A 684 NIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNE 760 (876)
T ss_dssp GGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHH
T ss_pred hhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHH
Confidence 2333333 378888888886 3678999999999999763222222222 124566666665432 2 6
Q ss_pred HHHHHHHHHHHHHHhhhhhhh--hhhhcccccHHHHHHHHhchHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Q 013228 352 IVTVFLKGLEKILKVGEAEKN--MDIAIGDVNQYAQLVEEAEGLEKIENLRSHD--NDEIHEKSVKILETYWC 420 (447)
Q Consensus 352 ~~~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~ 420 (447)
++..++.++..++........ ... .....+|...+ ++.+..+..++ ++.++..|..++..+..
T Consensus 761 ~r~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 761 LRESCLEAYTGIVQGLKGDQENVHPD-VMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSSCCGG-GGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCcccccch-HHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 788888888888765332100 000 00111122222 24444454555 78899999888887654
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.56 E-value=1.2e-14 Score=138.54 Aligned_cols=350 Identities=13% Similarity=0.092 Sum_probs=235.8
Q ss_pred CCHHHHHHHHHHHHHHHccCCCC----------chhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228 8 DDNNMQLEATTHIRKLLSNARSA----------PTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKV 77 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~----------~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 77 (447)
.++.+|..|+..|.++....-.. ....-....+-..|++.+.+++ +.+ ..++.+++.++...... .
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~~ia~~~~~~-~- 124 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVAGIACAEIPV-N- 124 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHHHHHHHHGGG-T-
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHHHHHHHhccc-c-
Confidence 36889999999999988642000 0000111234456778888887 678 88999999988632110 0
Q ss_pred HHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHhc
Q 013228 78 VIDHGAVPIFVKLLASP--SDDIREQAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNFC 153 (447)
Q Consensus 78 ~~~~~~i~~L~~ll~~~--~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~ 153 (447)
.-.+.++.|+..+.++ ++.++..++.+|+.++... +..-... ....++.++..+.... +..++..+++++.++.
T Consensus 125 -~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 125 -QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp -CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred -ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 0136789999999888 8999999999999998532 2110000 0124667777774432 6889999999999876
Q ss_pred CCCC--CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHH
Q 013228 154 AGKP--KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQT 231 (447)
Q Consensus 154 ~~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~ 231 (447)
.... .........+++.+...+.++++.++..+++++..++..........+..++++.++..+.+.++.++..++..
T Consensus 203 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282 (462)
T ss_dssp TTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4321 00111113357777778888899999999999999986544322212222567777888888899999999999
Q ss_pred HHHhhcCChh---------------------hHHHHHhcCChHHHHHhhccC------CchhHHHHHHHHHHHHhcCCHH
Q 013228 232 VVNIAAGDDF---------------------QTQCIINCGALPYLLGLLIHN------HKKSIKTDACWTISNITAGNSE 284 (447)
Q Consensus 232 l~~l~~~~~~---------------------~~~~~~~~~~l~~l~~~l~~~------~~~~v~~~a~~~l~nl~~~~~~ 284 (447)
+..++..... ..+... ..+++.+++.+... .+..+|..|+.++..++...++
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence 9988753210 000001 23456666666432 1457899999999999874322
Q ss_pred HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228 285 HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 285 ~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~ 364 (447)
.++ ..+++.+...+.++++.+|..|+.+++.++....++...... ..+++.++..+.++++.++..|+++|.+++
T Consensus 362 ---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 362 ---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp ---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 222 236777778888889999999999999999864422111111 457899999999999999999999999999
Q ss_pred Hhhhh
Q 013228 365 KVGEA 369 (447)
Q Consensus 365 ~~~~~ 369 (447)
.....
T Consensus 437 ~~~~~ 441 (462)
T 1ibr_B 437 ELLPE 441 (462)
T ss_dssp HHGGG
T ss_pred Hhccc
Confidence 86543
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.51 E-value=3.4e-13 Score=143.87 Aligned_cols=392 Identities=12% Similarity=0.119 Sum_probs=254.0
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCc----hhhhhccCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAP----TEEVIPFGVVPRFVEFLM-REDYPQLQFEAAWALKNIVSGTSEDTKV 77 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~~~v~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 77 (447)
..+.++++.+|..|+.+|..++....... ...-.-..++|.|.+.+. +++ +.++..|+.++..++.........
T Consensus 93 ~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~~~l~~ 171 (1230)
T 1u6g_C 93 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQGGLLVN 171 (1230)
T ss_dssp HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhHhHHHH
Confidence 34567777888888888888876532210 011112347899999998 466 899999999999988422111100
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC
Q 013228 78 VIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP 157 (447)
Q Consensus 78 ~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (447)
. -..+++.++..+.++++.+|..++.+++.++...+. .+ -...++.++..+....+..++..++.++..++...+
T Consensus 172 ~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~ 246 (1230)
T 1u6g_C 172 F-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG 246 (1230)
T ss_dssp T-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS
T ss_pred H-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH
Confidence 1 123567788888888999999999999999965432 11 223578888888554445667778888888876543
Q ss_pred CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC------------------
Q 013228 158 KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH------------------ 219 (447)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~------------------ 219 (447)
..-......++|.++..+.+.++.++..++.++..++........... ..+++.++..+..
T Consensus 247 ~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~ 325 (1230)
T 1u6g_C 247 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDA 325 (1230)
T ss_dssp GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccc
Confidence 322233478999999999999999999999999888864332211111 2344555444421
Q ss_pred -------------------CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 220 -------------------PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 220 -------------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
..+.+|..|+.++..++...+.....++ ..+++.++..+.+. +..+|..++.++..++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 326 DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLK 403 (1230)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHH
Confidence 1245788999999999875543333333 36788888888877 89999999988887764
Q ss_pred C--C-----------------HHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHH
Q 013228 281 G--N-----------------SEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPL 341 (447)
Q Consensus 281 ~--~-----------------~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L 341 (447)
. . ......++ ..+++.+...+.++++.+|..++.+++.++..........+ ..+++.+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l 480 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGI 480 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHH
T ss_pred HhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHH
Confidence 1 0 11112222 22566677778888899999999999988764221111111 1357788
Q ss_pred HhhccCCCH--HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228 342 CDLLLCADP--EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419 (447)
Q Consensus 342 ~~ll~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (447)
...+.+..+ .++..++..+..++....... +...+ ...++.+.....+++..++..|...+..+.
T Consensus 481 ~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~-----------~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQV-----------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp HHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH-----------HHhHH--HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 888887654 888888988888876422211 12222 244666666667777777666666666544
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.50 E-value=2.1e-12 Score=109.08 Aligned_cols=187 Identities=20% Similarity=0.154 Sum_probs=157.6
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228 38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR 117 (447)
Q Consensus 38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~ 117 (447)
.+.++.|+++|++++ +.+|..|++.|+.+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457999999999988 9999999999998865 2578999999999999999999999999852
Q ss_pred HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228 118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~ 197 (447)
.+.++.++..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23578888888 77889999999999998853 3578899999999999999999999999852
Q ss_pred cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
...++.|..++.++++.++..++.+|+.+.. + ..++.|..++.++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2357889999999999999999999998853 1 3566788888888 99999999999999
Q ss_pred HhcC
Q 013228 278 ITAG 281 (447)
Q Consensus 278 l~~~ 281 (447)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8654
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.50 E-value=2.1e-12 Score=109.04 Aligned_cols=188 Identities=20% Similarity=0.172 Sum_probs=156.9
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (447)
.+.++.|+..|.++++.+|..+++.|+.+.. ...++.++..+ .+++..++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 3578999999999999999999999998753 23578899988 67789999999999998863
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
...++.+..++.++++.++..++++|+.+.. .+.++.|..++.++++.++..++.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3578899999999999999999999998863 2467889999999999999999999998843
Q ss_pred hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
...++.|..++.++ ++.+|..++++|+.+.. ++ .++.|..++.++++.+|..|..+|.++
T Consensus 142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 23677899999888 99999999999999842 22 577788889999999999999999999
Q ss_pred cCCC
Q 013228 321 TFGG 324 (447)
Q Consensus 321 ~~~~ 324 (447)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7753
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.49 E-value=7e-12 Score=104.93 Aligned_cols=185 Identities=20% Similarity=0.185 Sum_probs=156.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
+..+.++.+|.++++.+|..++++|+.+.. ...++.++..+ .+.+..++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 457889999999999999999999998753 13578899999 67889999999999998853
Q ss_pred hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 241 (447)
...++.+..++.++++.++..++++|+.+.. ...++.|..++.++++.+|..++++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3578999999999999999999999998753 2367888999999999999999999998853
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~ 321 (447)
...++.|..++.++ ++.+|..|+++|+.+. .++ .++.|..++.++++.+|..|..+|.++.
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24677899999988 9999999999999983 223 5777888889999999999999999875
Q ss_pred C
Q 013228 322 F 322 (447)
Q Consensus 322 ~ 322 (447)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.48 E-value=4.2e-12 Score=106.33 Aligned_cols=186 Identities=20% Similarity=0.159 Sum_probs=158.1
Q ss_pred ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228 37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC 116 (447)
Q Consensus 37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~ 116 (447)
..+..+.++++|++++ +.+|..|+++|+.+.. .+.++.|+.++.++++.+|..++++|+.+...
T Consensus 12 ~~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE---- 75 (201)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred CCcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----
Confidence 3457889999999999 9999999999998865 24689999999999999999999999998521
Q ss_pred HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 013228 117 RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG 196 (447)
Q Consensus 117 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~ 196 (447)
..++.++..+ .++++.++..++++|..+.. ...++.+..++.++++.++..++++|+.+..
T Consensus 76 -------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 76 -------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred -------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 3578888888 67889999999999998853 3478889999999999999999999998853
Q ss_pred CcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228 197 TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS 276 (447)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~ 276 (447)
.+.++.|..++.++++.++..|+.+|+.+. .+ ..++.|..++.++ ++.+|..|..+|.
T Consensus 137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLE 194 (201)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 246788999999999999999999999883 22 2566788888888 9999999999998
Q ss_pred HHh
Q 013228 277 NIT 279 (447)
Q Consensus 277 nl~ 279 (447)
++.
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 873
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.39 E-value=5e-10 Score=109.67 Aligned_cols=327 Identities=15% Similarity=0.132 Sum_probs=226.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
++++.+++...+.-+.-++..++..+ + +.++- +++.+.+-+++++ +-++..|+++|+++.. ++...
T Consensus 80 vkl~~s~~~~~Krl~YL~l~~~~~~~-~---e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~----- 145 (621)
T 2vgl_A 80 VNLLSSNRYTEKQIGYLFISVLVNSN-S---ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE----- 145 (621)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHSCCCC-H---HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH-----
T ss_pred HHHhcCCCHHHHHHHHHHHHHHccCC-c---HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH-----
Confidence 46778888888888888888887552 2 21111 4667778888888 9999999999999965 55333
Q ss_pred CChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 82 GAVPIFVKLL--ASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 82 ~~i~~L~~ll--~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
.+++.+.+++ .+.++.+|..|+.++.++....|.. +...+.++.+..+| .+.|+.++..|+.++..++...+..
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHH
Confidence 3567888898 8899999999999999998755532 22236788888888 7888999999999999998765321
Q ss_pred ChhhHhhhHHHHHHhhccC-------------ChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcC-CC----
Q 013228 160 IFDQVRPALPALAQLVHSN-------------DKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLG-HP---- 220 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~-------------~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~-~~---- 220 (447)
........++.|.+++..+ ++=.+...+..+..++...+ .....+.+ .+..++..+. .+
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKK 299 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccc
Confidence 1111223333344444321 56788888999988885433 33222322 3444443321 11
Q ss_pred ----C--chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 013228 221 ----S--PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL 294 (447)
Q Consensus 221 ----~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 294 (447)
+ ..+...++.++..+.. .+.... .++..|..++.++ ++.+|..+...+..++...+. . ..+. ..
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~~~-~~ 369 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EAVK-TH 369 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HHHH-TT
T ss_pred ccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HHHH-HH
Confidence 2 2777888888888753 222222 3566788888888 899999999999999875432 1 1222 36
Q ss_pred hHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228 295 IGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 295 ~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
.+.++..+. ++|..++..++..|..++. +.+... ++..|...+.+.+.+++..++..+..++..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 778888888 8899999999999999985 344444 466777777778888888777777777643
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.38 E-value=2.5e-11 Score=118.84 Aligned_cols=360 Identities=10% Similarity=0.102 Sum_probs=234.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFL--MREDYPQLQFEAAWALKNIVSGTSEDTKVVID 80 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll--~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (447)
+-|+++++.++-.|++++.++... + +. ..+++.+.+++ .+.+ +-||..|+.++.++...+++... .
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~~~---e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~~---~ 185 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVGSR---E----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLVP---M 185 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHCCH---H----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGCC---C
T ss_pred HhcCCCCHHHHHHHHHHhhccCCH---H----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhcC---c
Confidence 346788888899999998888532 1 22 23678888898 7777 99999999999999886655332 2
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc----c--c----------cchhHHHH
Q 013228 81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN----K--H----------AKLSMLRI 144 (447)
Q Consensus 81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~----~--~----------~~~~~~~~ 144 (447)
.+.++.+..+|.++++.++.+|+.++..++..++.. + ...++.++..|. . . +++-.+..
T Consensus 186 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 478999999999999999999999999998766531 1 123444444332 1 1 14556666
Q ss_pred HHHHHHHhcCCCCCCChhhHhhhHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 013228 145 ATWTLSNFCAGKPKPIFDQVRPALPALAQLV---------HSND--KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRL 213 (447)
Q Consensus 145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll---------~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L 213 (447)
.+..+..++.............+++.++..+ ++.+ ..+...+..++..+.. .+.... .++..|
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L 334 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQL 334 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHH
Confidence 7777777664321111111223444444322 2223 3788889999988863 222111 356788
Q ss_pred HHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 013228 214 VELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDA 292 (447)
Q Consensus 214 ~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~ 292 (447)
..++.++++.++..++..+..++...+.. . ++ ......++..+. ++ +..+|..+..++..++. +.+...
T Consensus 335 ~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~---- 404 (621)
T 2vgl_A 335 GQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQ---- 404 (621)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHH----
T ss_pred HHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHH----
Confidence 89998899999999999999999766421 2 22 246778888888 77 89999999999999864 345544
Q ss_pred CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 013228 293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN 372 (447)
Q Consensus 293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 372 (447)
++..|...+...+.+++..++.+++.++..-.+. ... .++.|++++......+...+...+..++...+..+
T Consensus 405 -Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~-~~~-----~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~- 476 (621)
T 2vgl_A 405 -IVAEMLSYLETADYSIREEIVLKVAILAEKYAVD-YTW-----YVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQ- 476 (621)
T ss_dssp -HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS-THH-----HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCH-
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-HHH-----HHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHH-
Confidence 4556788888889999999999999887521111 111 36666777765444444445555666665433321
Q ss_pred hhhhcccccHHHHHHHHhchHHHHHHHh-cCC-CHHHHHHHHHHHHHhcC
Q 013228 373 MDIAIGDVNQYAQLVEEAEGLEKIENLR-SHD-NDEIHEKSVKILETYWC 420 (447)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~~-~~~v~~~a~~~l~~~~~ 420 (447)
.. .+..+.+.. ... ...+...+.|++.+|.+
T Consensus 477 ------------~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy~~ 509 (621)
T 2vgl_A 477 ------------GY-----AAKTVFEALQAPACHENLVKVGGYILGEFGN 509 (621)
T ss_dssp ------------HH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTH
T ss_pred ------------HH-----HHHHHHHHHcCccchHHHHHHHHHHhcchHH
Confidence 11 112222222 222 34566777899888854
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.23 E-value=3.2e-09 Score=82.20 Aligned_cols=218 Identities=13% Similarity=0.153 Sum_probs=175.0
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 80 DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 80 ~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
+..+++.++.+|.++-..++.+|+..+.+++...+...+.+ +..|+-+++.+...........+++.++..
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i---- 100 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---- 100 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh----
Confidence 34578899999999999999999999999998877765543 567888887787777877888888888854
Q ss_pred ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 239 (447)
......+++|.+..-.+-++++++.....+|..++...+.... +++.-+..++.+++..-+..|+..++.+....
T Consensus 101 ~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 101 KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 3456688899999888899999999999999999977665433 56778889999999888999999999887766
Q ss_pred hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHH
Q 013228 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319 (447)
Q Consensus 240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~ 319 (447)
..... ..+|.|..+|.+. +.-+|..|+.+|.+++..++..+..+. .-+.-+++.+..++..+..+|+.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 54322 5789999999999 999999999999999998887444322 23444566678888888889988
Q ss_pred hcCC
Q 013228 320 ATFG 323 (447)
Q Consensus 320 l~~~ 323 (447)
++.-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7653
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.19 E-value=9.9e-10 Score=108.99 Aligned_cols=218 Identities=17% Similarity=0.108 Sum_probs=155.6
Q ss_pred ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcC-Ch
Q 013228 37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFV-KLLASPSDDIREQAVCALGNVAAD-SA 114 (447)
Q Consensus 37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~i~~~a~~~L~~l~~~-~~ 114 (447)
+..++| +++.|++++ +..|..|+++|++++. ++..+..+...|++..++ .+|.+++.++|..|+++|+||+.+ .+
T Consensus 33 ~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 344444 567789999 8999999999999998 889999999999998765 578889999999999999999954 45
Q ss_pred hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228 115 RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLS 194 (447)
Q Consensus 115 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~ 194 (447)
.....+...|++++|...+... ...+........... ......+ ..+...++.+|++++
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~ 168 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLA 168 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhh---------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 6677788999999999998321 111222211110000 0001111 123455677888888
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhcCC---CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh--ccCCchhHHH
Q 013228 195 EGTNDEIQAVIEAGVCPRLVELLGH---PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLL--IHNHKKSIKT 269 (447)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~L~~lL~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l--~~~~~~~v~~ 269 (447)
..++.....+...+.++.|+.+|.+ ....++..|+.+|..++..++...+.+.+.+....+..++ ... +...+.
T Consensus 169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~ 247 (684)
T 4gmo_A 169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAV 247 (684)
T ss_dssp HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHH
T ss_pred hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHH
Confidence 7777777778888899999988843 3457999999999999999998888888776543332222 233 344577
Q ss_pred HHHHHHHHHh
Q 013228 270 DACWTISNIT 279 (447)
Q Consensus 270 ~a~~~l~nl~ 279 (447)
.+++.+.|+.
T Consensus 248 la~giL~Ni~ 257 (684)
T 4gmo_A 248 MACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHh
Confidence 8889999874
No 67
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.11 E-value=2.9e-09 Score=86.24 Aligned_cols=226 Identities=15% Similarity=0.112 Sum_probs=172.3
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 244 (447)
.+.+..+..++.+.|+.++..++.+|..+....+.......-..+++.++.++.++++.+...|++++..+..+.+-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45678899999999999999999999999976544444455557899999999999999999999999999987663333
Q ss_pred HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG 324 (447)
Q Consensus 245 ~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~ 324 (447)
.+.. +...+..++.++ ++-++.+++-.++-+--.++. .+++..+.+++.+.+.+++..+..++.+++...
T Consensus 112 ~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 3322 566788889988 999999999999988332211 125667888888999999999999999999754
Q ss_pred C-HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh-cC
Q 013228 325 T-HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR-SH 402 (447)
Q Consensus 325 ~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~ 402 (447)
. ++.. .+++.-+-.++++.|+.+++.|+.++..++...-... .... -.+......++. -.
T Consensus 182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~----------~~~~---~~~~~~~v~~l~~~~ 243 (265)
T 3b2a_A 182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN----------VKIE---LLKISRIVDGLVYRE 243 (265)
T ss_dssp SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC----------CHHH---HHHHHHHHHHGGGCS
T ss_pred CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh----------HHHH---HHHHHHHHHHHHHhc
Confidence 2 2221 2467777889999999999999999999987632211 1111 134456677777 67
Q ss_pred CCHHHHHHHHHHHHHh
Q 013228 403 DNDEIHEKSVKILETY 418 (447)
Q Consensus 403 ~~~~v~~~a~~~l~~~ 418 (447)
+.|.++.+|..+-+..
T Consensus 244 ~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 244 GAPIIRLKAKKVSDLI 259 (265)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHH
Confidence 8899999988776654
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.10 E-value=1.5e-08 Score=100.65 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=186.9
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHHcCCChhhHHHHH
Q 013228 7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-------YPQLQFEAAWALKNIVSGTSEDTKVVI 79 (447)
Q Consensus 7 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (447)
++++.++.-|+..|..+..+... .++..|...|.+++ .+.++..|+..|+.+..++..
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~------ 470 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN------ 470 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC------
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC------
Confidence 56788888888888887766311 14667777776543 367898999999997654321
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 80 DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 80 ~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
..+++.|...+.+++..+++.++.+|+.+-.++... .++..++..+....+..+++.++.+|..+....
T Consensus 471 -eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~--- 539 (963)
T 4ady_A 471 -IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGR--- 539 (963)
T ss_dssp -HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---
Confidence 125677888888877788889999999874333211 135667776656667789999999999887654
Q ss_pred ChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhc
Q 013228 160 IFDQVRPALPALAQLVH-SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~ 237 (447)
...++.+++.|. +.++-++..++.+++--.....+.. .++.|+..+ .+.++.+|..|+..|+.+..
T Consensus 540 -----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 540 -----QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp -----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred -----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence 345566666665 5678888888877764443333221 245444443 56778899999999999887
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228 238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317 (447)
Q Consensus 238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL 317 (447)
+.++ .++.++.++.+..++.+|..++++++.++.+++. ..++..|..+..+.+..||+.|+.+|
T Consensus 608 g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 608 RDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp SSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred CCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 6652 3455666555444999999999999999886542 11566677788888999999999999
Q ss_pred HHhcCCCC
Q 013228 318 SNATFGGT 325 (447)
Q Consensus 318 ~~l~~~~~ 325 (447)
+.+....+
T Consensus 672 G~Ig~gtn 679 (963)
T 4ady_A 672 SMILIQQT 679 (963)
T ss_dssp HHHSTTCC
T ss_pred HHHhcCCc
Confidence 99987543
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.07 E-value=1.1e-08 Score=91.38 Aligned_cols=272 Identities=14% Similarity=0.064 Sum_probs=160.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
+++++++|..++.-...++..++... + . ++ =++..+.+=+++++ +-+|-.|+++|+++.. ++....
T Consensus 74 ~kl~~s~d~~lKrLvYLyl~~~~~~~-~-e---~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~~---- 139 (355)
T 3tjz_B 74 TKLFQSNDPTLRRMCYLTIKEMSCIA-E-D---VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQA---- 139 (355)
T ss_dssp HGGGGCCCHHHHHHHHHHHHHHTTTS-S-C---GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHHH----
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCH-H-H---HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHHH----
Confidence 56889999999999999998877652 2 2 22 26788999999999 9999999999999987 333332
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (447)
+.+.+.+.+.+.++.+|..|+.+...|....|+.. .+++..+-+++ .+.++.++.+|+.++..+...+
T Consensus 140 -l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d----- 207 (355)
T 3tjz_B 140 -IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND----- 207 (355)
T ss_dssp -HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-----
T ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-----
Confidence 35667888899999999999999999998877532 25788888888 7778889999999999998653
Q ss_pred hhHhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 162 DQVRPALPALAQLVHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 162 ~~~~~~l~~l~~ll~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
...+..++..+... ++-.+...++.+..+...++.. ....+++.+...|++.++.|...|++++..+...
T Consensus 208 ---~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 208 ---RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp ---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred ---hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 22344445444432 3444445555555555433111 1236778888999999999999999999887652
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317 (447)
Q Consensus 239 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL 317 (447)
... .. ..++..+..++.++ ++.+|..|...|..+....|+..+. .-..+.+++.+++..+...|...|
T Consensus 281 ~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 281 SAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------------
T ss_pred CHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 221 11 24567777888888 8999999999999998766654332 334466777777777665555444
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.04 E-value=2.2e-08 Score=89.47 Aligned_cols=277 Identities=13% Similarity=0.139 Sum_probs=160.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 119 (447)
+...+++++.+++ ..++...--.+.+++...++. + =++..|.+=+.++++-+|-.|+++|+++.... .-+.
T Consensus 69 lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~ 139 (355)
T 3tjz_B 69 AFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA 139 (355)
T ss_dssp HHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH
Confidence 5667788999999 899999888888888853332 1 24677888888999999999999999997543 2222
Q ss_pred HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH
Q 013228 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTND 199 (447)
Q Consensus 120 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~ 199 (447)
..+.+-+.+ .+.++.++..|+.+...+.... .....+.++.+..++.+.++.++.+|+.++..+...+..
T Consensus 140 -----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~ 209 (355)
T 3tjz_B 140 -----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCS----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL 209 (355)
T ss_dssp -----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTC----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence 245556666 7889999999999999998654 334567889999999999999999999999999865532
Q ss_pred HHHHHHHhCcHHHHHHhcCCC---CchhHhHHHHHHHHhhcCC-hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228 200 EIQAVIEAGVCPRLVELLGHP---SPSVLTRALQTVVNIAAGD-DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275 (447)
Q Consensus 200 ~~~~~~~~~~~~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l 275 (447)
. +..++..+... ++-.+...++.+..++..+ +. .....++.+..+|++. ++.|..+|+.++
T Consensus 210 a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I 274 (355)
T 3tjz_B 210 A---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAI 274 (355)
T ss_dssp H---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHHH
T ss_pred H---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 2 22333333221 3333444455554554433 21 1235677888889988 999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHH
Q 013228 276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355 (447)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~ 355 (447)
..+...+.. .. ..++..|..++.++++.+|..|+..|..+... .|+.... .-..+.+++.++|..+...
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-~P~~v~~-----~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-HPSAVTA-----CNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-CcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence 988542222 11 23566777888899999999999999888875 3333222 3556778889999887777
Q ss_pred HHHHHH
Q 013228 356 FLKGLE 361 (447)
Q Consensus 356 a~~~l~ 361 (447)
|+..|.
T Consensus 344 Aittll 349 (355)
T 3tjz_B 344 AITTLL 349 (355)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 665543
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.00 E-value=2.4e-09 Score=106.29 Aligned_cols=197 Identities=15% Similarity=0.052 Sum_probs=148.7
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH-HHhcCCCCchhHhHHHHHHHHhhcC-Chhh
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRL-VELLGHPSPSVLTRALQTVVNIAAG-DDFQ 242 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L-~~lL~~~~~~v~~~a~~~l~~l~~~-~~~~ 242 (447)
..++| +++.|+++++..+..|+++|++++.. +...+.+...+++..+ ..+|.+++..+|..|+++|.||+.. ..+.
T Consensus 34 ~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 34555 55668999999999999999999964 4445667778888765 5678999999999999999999864 4566
Q ss_pred HHHHHhcCChHHHHHhhccCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228 243 TQCIINCGALPYLLGLLIHNH-------------K-------KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302 (447)
Q Consensus 243 ~~~~~~~~~l~~l~~~l~~~~-------------~-------~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l 302 (447)
+..++..|+++.|..++.... . ..+...++.+|.++|.++.+....+...+.++.++..+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 778889999999998885320 0 12334577888999888888888888889999999988
Q ss_pred hcC---chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH---HHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228 303 QNA---EFDIKNWAARAISNATFGGTHEQIKYLVREGCIK---PLCDLLLCADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 303 ~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~---~L~~ll~~~~~~~~~~a~~~l~~l~~ 365 (447)
.+. ..+++..|+.+|..++.. +++....+.+.+... .+..+.++.++ .+..+++.+.|++.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT 258 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence 643 367999999999999987 567777777766433 33333334443 45677888888864
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.99 E-value=6.2e-07 Score=69.65 Aligned_cols=217 Identities=14% Similarity=0.128 Sum_probs=168.9
Q ss_pred hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCh
Q 013228 36 IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLA-SPSDDIREQAVCALGNVAADSA 114 (447)
Q Consensus 36 ~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~ 114 (447)
.+..++..++.+|.+.- ..||..|+..+..++...++....++ ..|+.+++ +..-..-+...++++.++...|
T Consensus 29 ~d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred hhHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 34568889999998888 79999999999999998888766543 55666655 4556666788899999997776
Q ss_pred hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228 115 RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLS 194 (447)
Q Consensus 115 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~ 194 (447)
+.-.. .+|.+..-. .-.++.++-+..++|..+++.. .....+++.-+..++.++|..-+..++..+..+.
T Consensus 103 e~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaran----P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 103 ELVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKAN----PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HHHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HHHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhC----hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 54222 355566655 3448899999999999998764 3455778888999999999888888998888888
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHH
Q 013228 195 EGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWT 274 (447)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~ 274 (447)
.+..... ...+|.|..+|.+.+.-+|..+..+|.+++..++..+..+ ...++-+.+. +..+.+.....
T Consensus 173 en~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~-S~lv~~~V~eg 240 (253)
T 2db0_A 173 ENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDT-SSLVNKTVKEG 240 (253)
T ss_dssp TTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCS-CHHHHHHHHHH
T ss_pred ccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCc-HHHHHHHHHHH
Confidence 6654432 3678999999999999999999999999999998765533 3355667777 78888888888
Q ss_pred HHHHhc
Q 013228 275 ISNITA 280 (447)
Q Consensus 275 l~nl~~ 280 (447)
|+.+..
T Consensus 241 L~rl~l 246 (253)
T 2db0_A 241 ISRLLL 246 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 73
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.96 E-value=3.2e-07 Score=83.77 Aligned_cols=321 Identities=12% Similarity=0.106 Sum_probs=197.3
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCh---hHHHHHHhcCCH-HHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 81 HGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSA---RCRDLVLSEEAL-IPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 81 ~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
..++..++.+|.. .+.++.+..+..+.-+...++ .....+.+.... ..+........+.-....++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 3577888998875 688999999999999987776 333443333222 22333332334444556666666666644
Q ss_pred CCCCChhhHhhhHH--HHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHh--CcHHHHHHhcC----CC------
Q 013228 156 KPKPIFDQVRPALP--ALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEA--GVCPRLVELLG----HP------ 220 (447)
Q Consensus 156 ~~~~~~~~~~~~l~--~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~--~~~~~L~~lL~----~~------ 220 (447)
.+. .......++. -+...|+.. +...+.-++.++..+...+..+ ..+.+. +.++.++.+++ +.
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322 2333344444 344455543 3455666888888888655443 344433 23555544332 11
Q ss_pred -------CchhHhHHHHHHHHhhcCChhhHHHHHhcCCh--HHHHHhhccCCchhHHHHHHHHHHHHhcCCH----HHHH
Q 013228 221 -------SPSVLTRALQTVVNIAAGDDFQTQCIINCGAL--PYLLGLLIHNHKKSIKTDACWTISNITAGNS----EHIQ 287 (447)
Q Consensus 221 -------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l--~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~----~~~~ 287 (447)
...++..++.|++-++...+ ....+...++. ..|+.+++....+++.+-++.++.|+....+ ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 23457889999998887554 55556555533 5667777765478899999999999988542 2233
Q ss_pred H-HHHcCChHHHHHHHhc---CchhHHHHHHHHHHH-------h--------------cCCCCHH---------HHHHHH
Q 013228 288 A-VIDAGLIGPLVNLLQN---AEFDIKNWAARAISN-------A--------------TFGGTHE---------QIKYLV 333 (447)
Q Consensus 288 ~-l~~~~~~~~L~~~l~~---~~~~v~~~a~~aL~~-------l--------------~~~~~~~---------~~~~l~ 333 (447)
. ++..++ +.++..|.. .|+++....-..... + ... +|- +...|.
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W-SP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCHHHHHHHSGGGS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc-CCCccchhHHHHHHHHHH
Confidence 2 333344 445566653 355554332221111 1 111 111 111222
Q ss_pred Hc--CChHHHHhhccC----------CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228 334 RE--GCIKPLCDLLLC----------ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS 401 (447)
Q Consensus 334 ~~--~~l~~L~~ll~~----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~ 401 (447)
++ .++..|+++|++ .|+.+...|+.=+..+++.-+.. +..+.+.|+-+.+.+|++
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~ 457 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLN 457 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTS
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhc
Confidence 21 236788888873 36778888888899999876654 678889999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 013228 402 HDNDEIHEKSVKILETYW 419 (447)
Q Consensus 402 ~~~~~v~~~a~~~l~~~~ 419 (447)
|++++|+..|..++.++.
T Consensus 458 h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 458 HSDSRVKYEALKATQAII 475 (480)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.90 E-value=4.2e-07 Score=90.42 Aligned_cols=291 Identities=15% Similarity=0.119 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc---CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM---REDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF 87 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 87 (447)
..++.|+..|..+-... . .+++..|-+.|. +++ +.++..|+.+|+.+..+... .++..|
T Consensus 373 ~~k~sA~aSLGlIh~g~-~--------~~gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL 434 (963)
T 4ady_A 373 WAKFTATASLGVIHKGN-L--------LEGKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYL 434 (963)
T ss_dssp HHHHHHHHHHHHHTSSC-T--------TTHHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHH
T ss_pred HHHHHHHHHhhhhccCc-h--------HHHHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHH
Confidence 34556666665554442 1 134666667775 445 89999999999999875432 146777
Q ss_pred HHhhCCCC--------HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228 88 VKLLASPS--------DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159 (447)
Q Consensus 88 ~~ll~~~~--------~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (447)
...+.+++ +.++..|+..|+-...++.. + .++..|...+ .+.+..+.+.++.++..+..+..+
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--e-----ev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn- 505 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--I-----EVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK- 505 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--H-----HHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--H-----HHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC-
Confidence 77776544 67888999999997644421 1 1356677777 444445666788888877544311
Q ss_pred ChhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhc
Q 013228 160 IFDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~ 237 (447)
..++..|++.+ .+.++.++..+..+|+.+....++. ++.++..| .+.++-+|..++.+++--..
T Consensus 506 -----~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAya 571 (963)
T 4ady_A 506 -----PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYA 571 (963)
T ss_dssp -----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 23445555543 4567889999999999887666543 34555555 35778888888888875554
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCchhHHHHHHHH
Q 013228 238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL-QNAEFDIKNWAARA 316 (447)
Q Consensus 238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l-~~~~~~v~~~a~~a 316 (447)
+.... . .++.|+..+.+..+..+|..|+.+|+.+..+.++ .++.++..+ ++.++.+|..|+.+
T Consensus 572 GTGn~-~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalA 635 (963)
T 4ady_A 572 GTGNN-S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFA 635 (963)
T ss_dssp TSCCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHH
T ss_pred CCCCH-H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44322 1 2344555544333788999999999998776542 566677655 46799999999999
Q ss_pred HHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228 317 ISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 317 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
|+.++..... . .+++.|..+.++.+..++..|+.+|..+..-
T Consensus 636 LGli~aGn~~---~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 636 LGIACAGKGL---Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHTSSSCC---H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHhccCCCc---H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 9999764321 1 1477788889999999999999999988754
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.87 E-value=7e-08 Score=78.30 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=145.5
Q ss_pred CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC---CHH
Q 013228 208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG---NSE 284 (447)
Q Consensus 208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~---~~~ 284 (447)
+.+..+..+|.+.++.++..++.+|..+...-+.......-..+++.++.++++. +..+.-.|..++..+..+ +++
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHH
Confidence 4678899999999999999999999999876544433333346899999999999 999999999999999875 334
Q ss_pred HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228 285 HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 285 ~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~ 364 (447)
.... +...+.+++.++++-++.+|+..++.+-.... .. +++..+.+++++.+++++..++.++.++.
T Consensus 112 ~y~K-----l~~aL~dlik~~~~il~~eaae~Lgklkv~~~---~~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 112 TFLK-----AAKTLVSLLESPDDMMRIETIDVLSKLQPLED---SK-----LVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC---CH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc---hH-----HHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 3332 56678889999999999999999999943321 11 24778888999999999999999999998
Q ss_pred HhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 365 KVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
...++.... .+.++-+..+++++++.++++|..++++.+..
T Consensus 179 ~~S~D~~i~----------------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 179 NSSADSGHL----------------TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGCSSCCCG----------------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred cccCCHHHH----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 765542211 23345566889999999999999999998875
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=2.6e-08 Score=85.66 Aligned_cols=185 Identities=16% Similarity=0.220 Sum_probs=141.5
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 013228 128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-SNDKEVMTDACRALFYLSEGTNDEIQAVIE 206 (447)
Q Consensus 128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 206 (447)
.+.+.+ .+.++..+..++..|..+....+.........+++.+...+. +.+..++..++.++..++..-...... .-
T Consensus 19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~ 96 (242)
T 2qk2_A 19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA 96 (242)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 466677 788999999999999999876322212223677888999995 899999999999999999543222222 22
Q ss_pred hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHH
Q 013228 207 AGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEH 285 (447)
Q Consensus 207 ~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~ 285 (447)
..+++.++..+.+++..+|..+..++..++...+ . . .+++.+...+.+. ++.+|..++..++.+... .++.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 3578999999999999999999999999987543 1 1 2567888899988 999999999999997553 3331
Q ss_pred -HHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 286 -IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 286 -~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
....+. .++|.+..++.+.++++|..|..+++.++..
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 122233 4899999999999999999999999998753
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.83 E-value=9.7e-08 Score=82.06 Aligned_cols=181 Identities=13% Similarity=0.111 Sum_probs=136.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM-REDYPQLQFEAAWALKNIVSGTSEDTKVVIDH 81 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (447)
+.+.+.++..|..|+..|..++.+........ . ..+++.|...+. +++ ..++..|+.+++.++..-........ .
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~-~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~~-~ 97 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-Y-GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNYA-S 97 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-C-HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-H-HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHHH-H
Confidence 46788999999999999999988631111111 1 245778888884 777 89999999999999862211111211 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CC-C
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PK-P 159 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~-~ 159 (447)
.+++.++..+.++++.+|..+..+|..++...+ .. ..++.+...+ .+.++.++..++..+..+.... +. .
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESL-SNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 478999999999999999999999999986543 21 2367777877 6678899999999999965543 32 2
Q ss_pred ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
.......++|.+..++.+.++++|..+..+++.+..
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 344557899999999999999999999999988773
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.4e-07 Score=81.00 Aligned_cols=192 Identities=10% Similarity=0.079 Sum_probs=139.4
Q ss_pred HHHHhccccchhHHHHHHHHHHH-hcCCCCCCC--hhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc-HHHHH
Q 013228 129 LLTQLNKHAKLSMLRIATWTLSN-FCAGKPKPI--FDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTN-DEIQA 203 (447)
Q Consensus 129 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~-~~~~~ 203 (447)
+.+.+ .+.++.-+..++..|.. ++...+... ......++..+.+.+ ++.+..++..++.+++.++..-. .....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34455 67889999999999999 875543322 222356788888999 78899999999999999985322 11110
Q ss_pred HHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228 204 VIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS 283 (447)
Q Consensus 204 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~ 283 (447)
-....+++.++..+.+....++..+..++..++...+.....-.-..+++.+...+.+. ++.+|..++.+|..++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 11123689999999999999999999988888864421100000012566888899998 99999999999999886433
Q ss_pred ---HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 284 ---EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 284 ---~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
......+...++|.+..++.+.++.+|..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 434444434599999999999999999999999998864
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.8e-07 Score=80.34 Aligned_cols=191 Identities=13% Similarity=0.161 Sum_probs=137.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHH-HcCCChhhHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCC--hhHH
Q 013228 43 RFVEFLMREDYPQLQFEAAWALKN-IVSGTSEDTKVVID-HGAVPIFVKLL-ASPSDDIREQAVCALGNVAADS--ARCR 117 (447)
Q Consensus 43 ~L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~ll-~~~~~~i~~~a~~~L~~l~~~~--~~~~ 117 (447)
.+.+.+++.+ +.-|..|+..|.. ++.+.++....-.+ ..++..|...+ .+.+..++..|+.+++.++..- +.+.
T Consensus 20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 3556678888 7999999999999 87533332100000 13466777888 6789999999999999998422 1221
Q ss_pred -HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 118 -DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 118 -~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
... ...++.++..+ .+....++..+..++..++...+.... .....+++.+...+++.++.++..++.+|..+..
T Consensus 99 ~~y~--~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYV--SLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHH--HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 221 12478888888 566678989988888888875422111 1256789999999999999999999999999885
Q ss_pred CCc---HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228 196 GTN---DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237 (447)
Q Consensus 196 ~~~---~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~ 237 (447)
... ......+...+++.+.+++.+.+..+|..|..+++.++.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 543 222222225789999999999999999999999998874
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.61 E-value=5.4e-06 Score=83.63 Aligned_cols=290 Identities=13% Similarity=0.169 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHHHhCCChHH
Q 013228 10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS---EDTKVVIDHGAVPI 86 (447)
Q Consensus 10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~ 86 (447)
..-+..++..+..+..+.... ..+..+++..|.+.+.... .. +.|+.++..++.... ..-..++ +.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~ 99 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPA 99 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHH
T ss_pred hhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHH
Confidence 444566777777776653111 1122367788888887776 33 999999999985331 1222233 57899
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhh
Q 013228 87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRP 166 (447)
Q Consensus 87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 166 (447)
++..+.+....+|..|..++..+...-+...- ...++.++..|.....+..+..++.++..++...+.........
T Consensus 100 ~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 100 ICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 99998888899999988888887743322211 22488999999656678999999999999997654444445588
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHH
Q 013228 167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI 246 (447)
Q Consensus 167 ~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 246 (447)
++|.+...+.+..++|...+..++..++..-++. . + ...+|.|++.+.+++. ...++..|+..+.-.......+
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~-d-~--~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l 249 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNK-D-I--ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL 249 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT-T-T--GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc-c-h--hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH
Confidence 9999999999999999999988888777422211 0 0 1568999999988744 4455555555443332211111
Q ss_pred HhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhc-CchhHHHHHHHHHHHhc
Q 013228 247 INCGALPYLLGLLIHNHKKSIKTDACWTISNITA--GNSEHIQAVIDAGLIGPLVNLLQN-AEFDIKNWAARAISNAT 321 (447)
Q Consensus 247 ~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~~l~~-~~~~v~~~a~~aL~~l~ 321 (447)
+-.+|.|.+-|... ...+++.++-++.|+|. .+|.....++.. ++|.+-..... .+|++|..|..++..+.
T Consensus 250 --~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 250 --SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp --HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 12467788888777 88899999999999998 677766666554 77877776663 68999999988888774
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.60 E-value=1.2e-08 Score=78.39 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=93.0
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228 38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR 117 (447)
Q Consensus 38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~ 117 (447)
...++.++.+|++++ +.+|..|+++|+.+.. ..++.|+.++.++++.+|..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 457888999999988 8999999999887643 126889999999999999999999999863 1
Q ss_pred HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228 118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL 193 (447)
Q Consensus 118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l 193 (447)
..++.++..+ .++++.++..++++|..+.. ...++.|..+++++++.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1377888888 77889999999999998862 45788999999999999999999988653
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.56 E-value=5e-05 Score=69.52 Aligned_cols=325 Identities=13% Similarity=0.109 Sum_probs=194.6
Q ss_pred ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhhc
Q 013228 37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS---EDTKVVIDHGAV-PIFVK-LLASPSDDIREQAVCALGNVAA 111 (447)
Q Consensus 37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~L~~-ll~~~~~~i~~~a~~~L~~l~~ 111 (447)
+..++..++++|+....+++....+..+..+...++ .....+.+..-. ..+.. ++..+++-....+..++..++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 345788999999876558888888888998888665 433444443322 22332 3333445555666666666653
Q ss_pred CChhHHHHHHhcCCHH--HHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH--hhhHHHHHHhhcc----------
Q 013228 112 DSARCRDLVLSEEALI--PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV--RPALPALAQLVHS---------- 177 (447)
Q Consensus 112 ~~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~ll~~---------- 177 (447)
..+...+.+. ..+. -++..|....+...+..++.+|..+.+....+..... ...+|.++..++.
T Consensus 155 ~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 155 NGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred cCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 3322111110 0122 3455553322334455678888888776522222211 2345666543331
Q ss_pred -----C--ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcH--HHHHHhcC-CCCchhHhHHHHHHHHhhcCCh----hhH
Q 013228 178 -----N--DKEVMTDACRALFYLSEGTNDEIQAVIEAGVC--PRLVELLG-HPSPSVLTRALQTVVNIAAGDD----FQT 243 (447)
Q Consensus 178 -----~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~--~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~----~~~ 243 (447)
+ ...++..++.+++-++..+. ..+.+...++. +.|+..++ +..+.+.+-++.++.|+....+ ...
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 1 25678999999999986544 44555555543 45666664 4678899999999999997652 112
Q ss_pred H-HHHhcCChHHHHHhhccC--CchhHHHHHHHHHHHHh---------------------cCCHHHH-HHHHH-------
Q 013228 244 Q-CIINCGALPYLLGLLIHN--HKKSIKTDACWTISNIT---------------------AGNSEHI-QAVID------- 291 (447)
Q Consensus 244 ~-~~~~~~~l~~l~~~l~~~--~~~~v~~~a~~~l~nl~---------------------~~~~~~~-~~l~~------- 291 (447)
. .++..+++ .++..|... .|+++....-.....|- .-+|-+. ..+..
T Consensus 312 ~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 2 23333444 455555432 15555443322221111 1011111 12221
Q ss_pred ---cCChHHHHHHHhc----------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 013228 292 ---AGLIGPLVNLLQN----------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358 (447)
Q Consensus 292 ---~~~~~~L~~~l~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~ 358 (447)
..++..|+++|.+ .|+.+..-||.=++.++.. -|+.+..+.+.|+-+.+++++.++|++++..|+.
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~ 469 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALK 469 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 1247889999973 3688888999999999987 4667777777899999999999999999999999
Q ss_pred HHHHHHHh
Q 013228 359 GLEKILKV 366 (447)
Q Consensus 359 ~l~~l~~~ 366 (447)
++..++..
T Consensus 470 avQklm~~ 477 (480)
T 1ho8_A 470 ATQAIIGY 477 (480)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998753
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.51 E-value=2.1e-08 Score=77.06 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=91.2
Q ss_pred hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 013228 207 AGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI 286 (447)
Q Consensus 207 ~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~ 286 (447)
...++.+..+|.++++.+|..|+++|+.+.. + .++.|+..+.++ ++.+|..|+++|+++.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~-- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER-- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence 3567889999999999999999998876532 1 257889999988 99999999999999843 22
Q ss_pred HHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH
Q 013228 287 QAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362 (447)
Q Consensus 287 ~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~ 362 (447)
.++.|+..+.++++.+|..|+++|+++.. + ..++.|..+++++++.++..+..+|.+
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 47888899999999999999999999863 2 247788889999999999999888764
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.48 E-value=9.5e-05 Score=76.75 Aligned_cols=338 Identities=10% Similarity=0.039 Sum_probs=192.4
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh------hhHHH
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS------EDTKV 77 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~------~~~~~ 77 (447)
.+.+++..++...+.++..++...-+.. . .++++.|++++++++ +..+..++.++..++.... +.+..
T Consensus 93 ~l~~~~~~ir~~l~~~ia~ia~~d~p~~---W--p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~ 166 (960)
T 1wa5_C 93 LMISLPNNLQVQIGEAISSIADSDFPDR---W--PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDELFLE 166 (960)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHSTTT---C--TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhCccc---h--hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence 3444557788888888888887631211 1 358999999998887 7888999999999987321 22221
Q ss_pred H---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhc-CChhH-HHHHHhcCCHHHHHHHhccc
Q 013228 78 V---IDHGAVPIFVK-------LLASPSD---------DIREQAVCALGNVAA-DSARC-RDLVLSEEALIPLLTQLNKH 136 (447)
Q Consensus 78 ~---~~~~~i~~L~~-------ll~~~~~---------~i~~~a~~~L~~l~~-~~~~~-~~~~~~~~~l~~l~~~l~~~ 136 (447)
+ +. ...+.++. .+.++.. ++...++.++..+.. +.+.. .+.+ ...++.+.+.+...
T Consensus 167 l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 243 (960)
T 1wa5_C 167 IKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKYLSYS 243 (960)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHHHSCC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHHHcCC
Confidence 1 11 12333333 2443211 233446667766652 22221 1111 11233444444221
Q ss_pred -----cc---------hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-----cCChhHHHHHHHHHHHhccCC
Q 013228 137 -----AK---------LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-----SNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 137 -----~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-----~~~~~v~~~al~~l~~l~~~~ 197 (447)
.+ ..++..++.++..+....+..-......+++.....+. ..++.++..++..+..++...
T Consensus 244 ~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~ 323 (960)
T 1wa5_C 244 NPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP 323 (960)
T ss_dssp SCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH
T ss_pred CCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH
Confidence 11 24667778888777654322111223455666666664 346788888999888877532
Q ss_pred cHHHHHHHH-hC----cH-HHHHHhcC-----------------------CCCchhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228 198 NDEIQAVIE-AG----VC-PRLVELLG-----------------------HPSPSVLTRALQTVVNIAAGDDFQTQCIIN 248 (447)
Q Consensus 198 ~~~~~~~~~-~~----~~-~~L~~lL~-----------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 248 (447)
... .+.. .+ ++ +.++..+. +.....|..|..+|..++...+.. +..
T Consensus 324 ~~~--~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---v~~ 398 (960)
T 1wa5_C 324 KYF--EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---VTN 398 (960)
T ss_dssp HHH--GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---HHH
T ss_pred hHH--HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---HHH
Confidence 211 1110 01 22 22233321 111256778888888888655421 211
Q ss_pred cCChHHHHHhhc------cCCchhHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCChHHHHHHHhcC---ch
Q 013228 249 CGALPYLLGLLI------HNHKKSIKTDACWTISNITAGN--SE----------HIQAVIDAGLIGPLVNLLQNA---EF 307 (447)
Q Consensus 249 ~~~l~~l~~~l~------~~~~~~v~~~a~~~l~nl~~~~--~~----------~~~~l~~~~~~~~L~~~l~~~---~~ 307 (447)
.+++.+...+. +. +...|..|..+++.++.+. .. ....++..-++ ..+.++ ++
T Consensus 399 -~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~----p~l~~~~~~~p 472 (960)
T 1wa5_C 399 -IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIA----PDLTSNNIPHI 472 (960)
T ss_dssp -HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTH----HHHHCSSCSCH
T ss_pred -HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhH----HHhcCCCCCCc
Confidence 23445555554 44 6788999999999997531 10 12222211133 334555 88
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228 308 DIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
.+|..|+|+++.++..-.++.... +++.+++.+.++++.++..|+.+|.++++.
T Consensus 473 ~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 473 ILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred eehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 999999999999987644443333 578888888888899999999999999874
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.44 E-value=6.7e-06 Score=71.40 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=142.3
Q ss_pred HHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H
Q 013228 213 LVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI-D 291 (447)
Q Consensus 213 L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~ 291 (447)
++..|.+.+.+.++.++.-|..+...+......++..+++..|+++.... +...+..+..++.++... .....-++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence 44445566778888999999986666777888999999999999999998 999999999999999765 34454555 3
Q ss_pred cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHH--------Hc--CChHHHHhhcc---CCCHHHHHHHHH
Q 013228 292 AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLV--------RE--GCIKPLCDLLL---CADPEIVTVFLK 358 (447)
Q Consensus 292 ~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~--------~~--~~l~~L~~ll~---~~~~~~~~~a~~ 358 (447)
..++..+..++.+.+..+.+.|+..|..++...+. ....+. .. ..+..|+..|. +.|.+++..++.
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45788899999988899999999999998876421 111111 11 24888999997 678999999999
Q ss_pred HHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC--CHHHHHH
Q 013228 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD--NDEIHEK 410 (447)
Q Consensus 359 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~--~~~v~~~ 410 (447)
.+..++...+..... ..+...+.+.|.-..+...+... ++++++.
T Consensus 280 LIN~lL~~apd~d~~-------~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQDSF-------YDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHHHH-------HHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChhHH-------HHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 999999876543321 12577888888888888877665 5666543
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.40 E-value=0.00012 Score=75.90 Aligned_cols=381 Identities=9% Similarity=0.067 Sum_probs=210.1
Q ss_pred CCHHHHHHHHHHHHHHHccCCC-----CchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-ChhhHHHHHhC
Q 013228 8 DDNNMQLEATTHIRKLLSNARS-----APTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSG-TSEDTKVVIDH 81 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~ 81 (447)
.+..+|..|+..|.+.....-. .....=.+..+=..+++.+.++. ..+|..++.++..++.. .++.. .
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~~W-----p 122 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFPDRW-----P 122 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTC-----T
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCccch-----h
Confidence 4578999999999998764211 01111011122234555555566 79999999999998862 11111 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC------hhHHHHHH--hcCCHHHHHHH-------hcccc-c-------
Q 013228 82 GAVPIFVKLLASPSDDIREQAVCALGNVAADS------ARCRDLVL--SEEALIPLLTQ-------LNKHA-K------- 138 (447)
Q Consensus 82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~------~~~~~~~~--~~~~l~~l~~~-------l~~~~-~------- 138 (447)
+.++.|++.+.++++..+..++.++..++... +..+..+. -....++++++ +.... +
T Consensus 123 ~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~ 202 (960)
T 1wa5_C 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNIL 202 (960)
T ss_dssp THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 57888999998888888999999999998632 12221110 01123433333 32221 1
Q ss_pred hhHHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhccC------C---------hhHHHHHHHHHHHhccCCcHHHH
Q 013228 139 LSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN------D---------KEVMTDACRALFYLSEGTNDEIQ 202 (447)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~------~---------~~v~~~al~~l~~l~~~~~~~~~ 202 (447)
.++...++.+++.+.... +..........++.+..++... + ..++..++.++..+.........
T Consensus 203 ~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~ 282 (960)
T 1wa5_C 203 FDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFG 282 (960)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344666666665433 2211112244556666665421 1 24677888888887754444332
Q ss_pred HHHHhCcHHHHHHhcC-----CCCchhHhHHHHHHHHhhcCChhhHHHHHh-cCChH-----HHHHhhcc----------
Q 013228 203 AVIEAGVCPRLVELLG-----HPSPSVLTRALQTVVNIAAGDDFQTQCIIN-CGALP-----YLLGLLIH---------- 261 (447)
Q Consensus 203 ~~~~~~~~~~L~~lL~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~-----~l~~~l~~---------- 261 (447)
... ..+++..+..+. ..++.++..++..+..++..... .. ++. ...++ .++..+.-
T Consensus 283 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~-~~-~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~ 359 (960)
T 1wa5_C 283 PMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY-FE-IFNNESAMNNITEQIILPNVTLREEDVELFED 359 (960)
T ss_dssp HHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH-HG-GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT
T ss_pred HHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH-HH-HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhc
Confidence 222 234555555553 34567888899999888753221 11 111 01222 22222210
Q ss_pred ------------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cCchhHHHHHHHHHHHhcCC
Q 013228 262 ------------NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ------NAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 262 ------------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~------~~~~~v~~~a~~aL~~l~~~ 323 (447)
......|..|..+|..++...++. ++.. +++.+...+. +.++..|+.|+.+++.++..
T Consensus 360 dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---v~~~-~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~ 435 (960)
T 1wa5_C 360 DPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---VTNI-FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN 435 (960)
T ss_dssp CHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---HHHH-HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBS
T ss_pred CHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---HHHH-HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH
Confidence 102256777778888877644321 1111 3344444454 45678889999999999753
Q ss_pred CC-HH----------HHHHHHHcCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH
Q 013228 324 GT-HE----------QIKYLVREGCIKPLCDLLLCA---DPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE 389 (447)
Q Consensus 324 ~~-~~----------~~~~l~~~~~l~~L~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 389 (447)
+. .. ....+.. ..+...+.++ ++.++..+++++..+...-.. +.+
T Consensus 436 ~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---------------~~l-- 494 (960)
T 1wa5_C 436 GNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK---------------AQL-- 494 (960)
T ss_dssp SCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH---------------HHH--
T ss_pred hccccCCcccccccccHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH---------------HHH--
Confidence 21 00 1222111 1222333444 789999999999998764211 111
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228 390 AEGLEKIENLRSHDNDEIHEKSVKILETYWCGR 422 (447)
Q Consensus 390 ~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (447)
...++.+.+.+.++++.|+..|..++.++++..
T Consensus 495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 223455555566778999999999999988743
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.36 E-value=9.4e-05 Score=74.75 Aligned_cols=298 Identities=14% Similarity=0.118 Sum_probs=200.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC--CChhhH
Q 013228 87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK--PIFDQV 164 (447)
Q Consensus 87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~ 164 (447)
+.+-+...+..-+..++..+..+....... .....+.+..+...+....+. +.|+.++..++..... ......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence 444344322333345555666654322111 011123456666666332233 8899999999966522 333344
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChhh
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDFQ 242 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~ 242 (447)
-+.+|.++..+.+....|+..|-.++..+...-+ ... ..++|.|+..|.+ ..|..+..|+.++..++...+.+
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 5678888888888888999888777766664332 222 2467888888855 47999999999999999766644
Q ss_pred HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA--GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 243 ~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
...-+ ..++|.+...+.+. .++++..|..++..+|. .+.+. ..++|.|++.+..++. ..++...|+.-
T Consensus 169 ~~~~~-~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 169 VALRM-PELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT 238 (986)
T ss_dssp HHHHH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred HHHhc-cchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence 33222 35889999999988 99999999999999987 34331 3479999999987633 45566666554
Q ss_pred cCCC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHH
Q 013228 321 TFGG--THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIEN 398 (447)
Q Consensus 321 ~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 398 (447)
+... +...... .++.|.+-|......+...+.-++.|+++..++-.. ...|. ...++.+++
T Consensus 239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~-----------~~~f~-~~l~p~~~~ 301 (986)
T 2iw3_A 239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV-----------IAPFL-GKLLPGLKS 301 (986)
T ss_dssp CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH-----------HHHHH-TTTHHHHHH
T ss_pred eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH-----------Hhhhh-hhhhhHHHH
Confidence 4432 2222333 377888888888888999999999999998665431 34444 455677777
Q ss_pred H-hcCCCHHHHHHHHHHHHHhcCC
Q 013228 399 L-RSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 399 l-~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
. ..-.+|++++.|.+.+..+...
T Consensus 302 ~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 302 NFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHHHh
Confidence 5 4567899999999988888653
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.32 E-value=0.0002 Score=74.57 Aligned_cols=394 Identities=10% Similarity=0.042 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHh-------hcCCCC--HHHHHHHHHHHHHHcCCChhhH---
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEF-------LMREDY--PQLQFEAAWALKNIVSGTSEDT--- 75 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~l-------l~~~~~--~~v~~~a~~~L~~l~~~~~~~~--- 75 (447)
++++.+..|+.++..+............+. .+++.++.+ +..++. ++.....++.+..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999998631111111111 133333332 223331 2667777777777764222211
Q ss_pred ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcC---------ChhHHHHHHh--cCCHHHHH
Q 013228 76 ---------KVVIDHGAVPIFVKLLAS-----PSDDIREQAVCALGNVAAD---------SARCRDLVLS--EEALIPLL 130 (447)
Q Consensus 76 ---------~~~~~~~~i~~L~~ll~~-----~~~~i~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~l~~l~ 130 (447)
..+. ..++.++.+... .++++...+++.+..++.. .+.....+.. ...++.++
T Consensus 335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 345566665533 4788899999988887641 1111111110 12344444
Q ss_pred HHhccccc--------------hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-----CChhHHHHHHHHHH
Q 013228 131 TQLNKHAK--------------LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS-----NDKEVMTDACRALF 191 (447)
Q Consensus 131 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~v~~~al~~l~ 191 (447)
..+....+ .+.+..+..++..++...+ ......+++.+...+.+ .+...++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44422111 1345566777777775432 23334455555555544 57788999999999
Q ss_pred HhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHH
Q 013228 192 YLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTD 270 (447)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~ 270 (447)
.++..........+. .+++.+..+.. +.++.++..++++++.++..-....+.+ ..+++.++..+ + +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~---~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N---SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H---SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C---hHHHHH
Confidence 998765432211111 13342322222 3578999999999999875321111111 12455666666 2 578999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHHHHHHhcCCCC-HHHHHHHHHcCChHHHH----h
Q 013228 271 ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAARAISNATFGGT-HEQIKYLVREGCIKPLC----D 343 (447)
Q Consensus 271 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~----~ 343 (447)
|++++.+++..........++ .++..+..++..+ +.+.+..+..+++.++.... .+....+.. +++.+. .
T Consensus 563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~--ll~~l~~~l~~ 639 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDI--IVSPCFEELQA 639 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHH
Confidence 999999999755444444333 3677777778763 57888899999998876422 222333222 233333 3
Q ss_pred hccCC--CHHHHH---HHHHHHHHHHHhhhhhhhhhhhcc--cccHHHHHHHHhchHHHHHHHhc--CCCHHHHHHHHHH
Q 013228 344 LLLCA--DPEIVT---VFLKGLEKILKVGEAEKNMDIAIG--DVNQYAQLVEEAEGLEKIENLRS--HDNDEIHEKSVKI 414 (447)
Q Consensus 344 ll~~~--~~~~~~---~a~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~~l~~--~~~~~v~~~a~~~ 414 (447)
.+... +++.+. .+++.|..++..-...... ...+ ..+++...+ ...++.+..+.. ..++++.+.+.++
T Consensus 640 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~-~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~ 716 (971)
T 2x1g_F 640 ICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDE-QATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSA 716 (971)
T ss_dssp HHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCc-ccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33333 332233 3444455444422110000 0000 001111222 344565555543 2467888888888
Q ss_pred HHHhcC
Q 013228 415 LETYWC 420 (447)
Q Consensus 415 l~~~~~ 420 (447)
+.+...
T Consensus 717 ~~~~~~ 722 (971)
T 2x1g_F 717 MKHAIT 722 (971)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887443
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.32 E-value=0.00023 Score=74.00 Aligned_cols=331 Identities=11% Similarity=0.045 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc---------------C-CCCHHHHHHHHHHHHHHcCCCh--
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM---------------R-EDYPQLQFEAAWALKNIVSGTS-- 72 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~---------------~-~~~~~v~~~a~~~L~~l~~~~~-- 72 (447)
.++..++.++...+....-+ .. .....++.+.. |. + ++ ++++..|+.++..+....+
T Consensus 204 ~~~~~al~~l~~~~~~~~ip-~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~~ 278 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYT-IE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDCH 278 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCC-GG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGGG
T ss_pred hHHHHHHHHHHHHHhhCCcC-cc--ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCcccc
Confidence 67777888887766520011 11 33445666665 41 1 34 7899999999999987322
Q ss_pred hhHHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhcCChhH-HHHHH-----hc----CCHHHHHHH
Q 013228 73 EDTKVVIDHGAVPIFVK-------LLASPS---DDIREQAVCALGNVAADSARC-RDLVL-----SE----EALIPLLTQ 132 (447)
Q Consensus 73 ~~~~~~~~~~~i~~L~~-------ll~~~~---~~i~~~a~~~L~~l~~~~~~~-~~~~~-----~~----~~l~~l~~~ 132 (447)
+....+ . .+++.++. .+...+ .+.....++.+..++...... .+.+. .. ..++.++..
T Consensus 279 ~~~~~~-~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~ 356 (971)
T 2x1g_F 279 NYPKTA-F-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHC 356 (971)
T ss_dssp GCHHHH-H-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-H-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH
Confidence 111111 1 12233332 123334 367777777777776432211 10000 01 123333433
Q ss_pred hcc----ccchhHHHHHHHHHHHhcCCC--------CCCChh----hHhhhHHHHHHhhccCCh---------------h
Q 013228 133 LNK----HAKLSMLRIATWTLSNFCAGK--------PKPIFD----QVRPALPALAQLVHSNDK---------------E 181 (447)
Q Consensus 133 l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~~----~~~~~l~~l~~ll~~~~~---------------~ 181 (447)
... ..+.++...+++.+..++... ...... ....+++.++..+..+++ .
T Consensus 357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~ 436 (971)
T 2x1g_F 357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC 436 (971)
T ss_dssp HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence 312 246678888888887776411 011111 223445555544432211 3
Q ss_pred HHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcC-----CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHH
Q 013228 182 VMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLG-----HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYL 255 (447)
Q Consensus 182 v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l 255 (447)
.|..+..++..++.... ..... +++.+...+. ..++..+..++.+++.++.+...... ..++.+
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l 506 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHH
Confidence 45556666666654333 21111 1233333332 26788999999999999876553221 223333
Q ss_pred HHhh---c--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHH
Q 013228 256 LGLL---I--HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIK 330 (447)
Q Consensus 256 ~~~l---~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 330 (447)
+.++ . ++ ++.+|..++|+++.++..-....+.+ . .+++.++..+. +.++..|++++.+++.........
T Consensus 507 ~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l-~-~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p 580 (971)
T 2x1g_F 507 MRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI-P-PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKP 580 (971)
T ss_dssp HHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH-H-HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH-H-HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccc
Confidence 3332 2 34 78999999999999875211111111 1 25666666662 789999999999999754333222
Q ss_pred HHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 013228 331 YLVREGCIKPLCDLLLC--ADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 331 ~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~ 366 (447)
++ ..++..+..++.. -+.+.+..+++++..++..
T Consensus 581 ~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 581 YA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred cH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 22 2356677777776 3568888999999999875
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.28 E-value=2.6e-05 Score=67.77 Aligned_cols=186 Identities=12% Similarity=0.077 Sum_probs=136.8
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228 169 PALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN 248 (447)
Q Consensus 169 ~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 248 (447)
..++.-|.+.+.+.+..++..|..+...+......++..+++..|+......+...+..+++++.++..+.......+-.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 34556666778888999999999866566667788999999999999999999999999999999999864433222224
Q ss_pred cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH----------cCChHHHHHHHh---cCchhHHHHHHH
Q 013228 249 CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID----------AGLIGPLVNLLQ---NAEFDIKNWAAR 315 (447)
Q Consensus 249 ~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~----------~~~~~~L~~~l~---~~~~~v~~~a~~ 315 (447)
..++..+..++.+. ...+.+.|...|..++..++.....+.+ ...++.++.+|+ +.|.+++.+|+.
T Consensus 201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 56788889999876 8999999999999988755433332221 124888999997 678999999998
Q ss_pred HHHHhcCCCC-HH----HHHHHHHcCChHHHHhhccCC--CHHHHHH
Q 013228 316 AISNATFGGT-HE----QIKYLVREGCIKPLCDLLLCA--DPEIVTV 355 (447)
Q Consensus 316 aL~~l~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~~~~~ 355 (447)
.|..+..... .+ ....+.+.|.-..+.+.++.. +++++..
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 8776665433 33 233444566556677767764 6666655
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.25 E-value=0.00044 Score=71.44 Aligned_cols=336 Identities=11% Similarity=0.081 Sum_probs=184.7
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCC---h--hhHHHHHhC
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFV-EFLMREDYPQLQFEAAWALKNIVSGT---S--EDTKVVIDH 81 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~-~ll~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~~~~~ 81 (447)
.++++...++.++....+- -....+++.+.++.+. .++. + ++++..|+.+|..+.... + +....+...
T Consensus 207 ~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 207 ASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp SSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 3456666677777777653 3356677888999999 8874 4 789999999999998622 2 122111110
Q ss_pred --CChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhc-------CChhHHHHHHhcCCHHHHHHHhccccc
Q 013228 82 --GAVPIF--------------VKLLASPSDDIREQAVCALGNVAA-------DSARCRDLVLSEEALIPLLTQLNKHAK 138 (447)
Q Consensus 82 --~~i~~L--------------~~ll~~~~~~i~~~a~~~L~~l~~-------~~~~~~~~~~~~~~l~~l~~~l~~~~~ 138 (447)
+.++.+ ...-...+.+..+..++.+..+.. ..+..+..+. .++..++..- ..++
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~d 357 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIEE 357 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSSC
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCCc
Confidence 111111 111122356666666666655542 1122122211 1122333332 4557
Q ss_pred hhHHHHHHHHHHHhcCCCC--CCChhhH----hhhHHHHHHhhccCC--------------------hh-HHH----HHH
Q 013228 139 LSMLRIATWTLSNFCAGKP--KPIFDQV----RPALPALAQLVHSND--------------------KE-VMT----DAC 187 (447)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~--~~~~~~~----~~~l~~l~~ll~~~~--------------------~~-v~~----~al 187 (447)
.++...++..-..++.+-. ....... ..+++.+++-+..+. ++ ... .++
T Consensus 358 ~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L 437 (1023)
T 4hat_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHH
Confidence 7777776665555553221 1122222 344445554444322 00 111 222
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc----
Q 013228 188 RALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH---- 261 (447)
Q Consensus 188 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~---- 261 (447)
..+.++.. ++..+ -.++.+...+.+ .++..+..++++++.++.+.......-.-..+++.|+.++.+
T Consensus 438 ~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~ 510 (1023)
T 4hat_C 438 VYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGK 510 (1023)
T ss_dssp HHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccC
Confidence 23333221 11111 123444444443 679999999999999997765432222223577788888764
Q ss_pred -CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH---
Q 013228 262 -NHKKSIKTDACWTISNITA---GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR--- 334 (447)
Q Consensus 262 -~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--- 334 (447)
+ ...++..++|+++..+. ..++.... ++..|++.+..+++.++..|++++.+++..+. ..+..
T Consensus 511 d~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~----~~l~~~~~ 580 (1023)
T 4hat_C 511 DN-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCK----YHFVIQQP 580 (1023)
T ss_dssp HH-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT----HHHHSCCT
T ss_pred cc-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH----HHhhccCC
Confidence 2 44566788899998765 23332222 45556666766778999999999999987432 22221
Q ss_pred -------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 335 -------EGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 335 -------~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
..++..+......-+++-+..+.+++..++...+.
T Consensus 581 ~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 581 RESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp TCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 01233344444455667778889999999987543
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.04 E-value=0.0015 Score=67.97 Aligned_cols=338 Identities=12% Similarity=0.084 Sum_probs=186.2
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCC
Q 013228 49 MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL---ASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125 (447)
Q Consensus 49 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~ 125 (447)
.+.+ ...++.++++++.++.+-.+.. ...++.++..+ .++++.++..++|+++.++..-....+. -..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence 4445 7889999999999997533211 12334444433 3357889999999999998532211122 2357
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCCc-HHHH
Q 013228 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSN--DKEVMTDACRALFYLSEGTN-DEIQ 202 (447)
Q Consensus 126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~al~~l~~l~~~~~-~~~~ 202 (447)
++.++..+ .+ +.++..|++++..++......-......++..+..++... +...+..+..+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88888888 33 6889999999999997543222233466677777777753 56788888999998885443 3222
Q ss_pred HHHHhCcHHHHHHhc----CC-CCchhHh---HHHHHHHHhhcCCh----------------------hhHHHHHhcCCh
Q 013228 203 AVIEAGVCPRLVELL----GH-PSPSVLT---RALQTVVNIAAGDD----------------------FQTQCIINCGAL 252 (447)
Q Consensus 203 ~~~~~~~~~~L~~lL----~~-~~~~v~~---~a~~~l~~l~~~~~----------------------~~~~~~~~~~~l 252 (447)
..++ .+++.+...+ .. .+++.+. ..+.+++.+...-. ..... +...++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence 2222 2444444333 22 2344433 34445544432110 00111 122355
Q ss_pred HHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH----hc-CchhHHHHHHHHHHHhcC--CC
Q 013228 253 PYLLGLLIH-NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL----QN-AEFDIKNWAARAISNATF--GG 324 (447)
Q Consensus 253 ~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l----~~-~~~~v~~~a~~aL~~l~~--~~ 324 (447)
+.+..++.. ..+..+.+.++.++..++..-.+.. ..++|.++..+ .. +.+. .++.+..+.. ..
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~ 756 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHhCC
Confidence 555555542 1256888888888888764211111 11244433332 22 2222 3333333322 11
Q ss_pred CH---HHHHHHHHcCChHHHHhhcc---CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccH-HHHHHHHhchHHHHH
Q 013228 325 TH---EQIKYLVREGCIKPLCDLLL---CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQ-YAQLVEEAEGLEKIE 397 (447)
Q Consensus 325 ~~---~~~~~l~~~~~l~~L~~ll~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~ 397 (447)
.+ .....+.+ ..+..+..++. ..+++++......+..++......-- ..+. +.. .++.+.
T Consensus 757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~------~~~~~~~~------i~~~~~ 823 (963)
T 2x19_B 757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL------CERLDVKA------VFQCAV 823 (963)
T ss_dssp CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG------CTTSCHHH------HHHHHH
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHc------CCcccHHH------HHHHHH
Confidence 11 12221111 12333333333 24689999999999999986554310 0111 111 234444
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCC
Q 013228 398 NLRSHDNDEIHEKSVKILETYWCG 421 (447)
Q Consensus 398 ~l~~~~~~~v~~~a~~~l~~~~~~ 421 (447)
..+.+++.++.+.+...+.++...
T Consensus 824 ~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 824 LALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhc
Confidence 456688899999999999988754
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.03 E-value=0.0021 Score=66.84 Aligned_cols=330 Identities=12% Similarity=0.066 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh--hhHHHH---Hh--CCCh
Q 013228 12 MQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS--EDTKVV---ID--HGAV 84 (447)
Q Consensus 12 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~---~~--~~~i 84 (447)
+...++.++.....-. . .. .....+++.+.+.+. + ++++..|+.++..+..... .....+ .. .+..
T Consensus 218 ~~~~~l~~l~~wi~~~-~-~~--~~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~ 290 (963)
T 2x19_B 218 VRQKVLKCFSSWVQLE-V-PL--QDCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQ 290 (963)
T ss_dssp HHHHHHHHHHHHHTSS-C-CG--GGTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHcCC-C-Cc--ccchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhH
Confidence 5555666665544321 1 11 112345677777763 4 6789999999999987421 111111 11 0112
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHh--------cCCHHHHHHHhcc----ccchhHHHHHHHHHHHh
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS--------EEALIPLLTQLNK----HAKLSMLRIATWTLSNF 152 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--------~~~l~~l~~~l~~----~~~~~~~~~a~~~L~~l 152 (447)
+.+...+...+.......+..+..++...+ ..+.. ...+..++..... ..+..+...++..+..+
T Consensus 291 ~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l 367 (963)
T 2x19_B 291 EQLRQAVQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTL 367 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHH
Confidence 222223334455666666666666653211 11110 0223344443322 12444555555555555
Q ss_pred cCCCCCC-------Ch----hhHhhhHHHHHHhhccCCh---------------hHHHHHHHHHHHhccCCcHHHHHHHH
Q 013228 153 CAGKPKP-------IF----DQVRPALPALAQLVHSNDK---------------EVMTDACRALFYLSEGTNDEIQAVIE 206 (447)
Q Consensus 153 ~~~~~~~-------~~----~~~~~~l~~l~~ll~~~~~---------------~v~~~al~~l~~l~~~~~~~~~~~~~ 206 (447)
+...... .. .....+++.++..+..+++ +.+..+..++..++...... +.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l- 443 (963)
T 2x19_B 368 QDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LL- 443 (963)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HH-
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HH-
Confidence 4421110 01 1123344444444432221 11333444444443211110 00
Q ss_pred hCcHHHHHHhc----CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh---ccCCchhHHHHHHHHHHHHh
Q 013228 207 AGVCPRLVELL----GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLL---IHNHKKSIKTDACWTISNIT 279 (447)
Q Consensus 207 ~~~~~~L~~lL----~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l---~~~~~~~v~~~a~~~l~nl~ 279 (447)
.-+++.+...+ .+.++..+..++++++.++.+..... ...++.++..+ ..+ ++.++..++|+++.++
T Consensus 444 ~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~ 517 (963)
T 2x19_B 444 SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALS 517 (963)
T ss_dssp HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHH
Confidence 11233344444 55778899999999999987654211 12233333333 334 6789999999999987
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHH
Q 013228 280 AGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC--ADPEIVTVFL 357 (447)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~ 357 (447)
..-.... ..+ ..+++.++..+.+ +.++..|++++.+++.........++ ..++..|..++.. -+.+.+..++
T Consensus 518 ~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~ 591 (963)
T 2x19_B 518 EWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLM 591 (963)
T ss_dssp HHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHH
Confidence 5311111 222 3588888888854 89999999999999864321111111 1234455555554 2567888899
Q ss_pred HHHHHHHHhh
Q 013228 358 KGLEKILKVG 367 (447)
Q Consensus 358 ~~l~~l~~~~ 367 (447)
+++..++...
T Consensus 592 eai~~i~~~~ 601 (963)
T 2x19_B 592 QALGFLLSAL 601 (963)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcC
Confidence 9999998644
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.99 E-value=0.0017 Score=67.96 Aligned_cols=343 Identities=11% Similarity=0.104 Sum_probs=177.7
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--hh---hHHHHHh--
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGT--SE---DTKVVID-- 80 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~~~~-- 80 (447)
++..++..++.++.....-- ....+.+...++.+.+.+. .+ ++++..|+.+|..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l-~~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFM-TS-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHH-HS-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhC-CC-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 34667777888887766532 2344555677777774332 25 899999999999998642 21 1111111
Q ss_pred CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhcC-------ChhHHHHHHhcCCHHHHHHHhccccch
Q 013228 81 HGAVPIFVK-LL-------------ASPSDDIREQAVCALGNVAAD-------SARCRDLVLSEEALIPLLTQLNKHAKL 139 (447)
Q Consensus 81 ~~~i~~L~~-ll-------------~~~~~~i~~~a~~~L~~l~~~-------~~~~~~~~~~~~~l~~l~~~l~~~~~~ 139 (447)
.+.+..+.. ++ .+.+.+.....+..+..+... .+..+..+ ..+++.++... ..++.
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~ 358 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER 358 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence 122222221 11 122444555555555444321 11111111 12344455544 34567
Q ss_pred hHHHHHHHHHHHhcC----CCCC--CChhhHhhhHHHHHHhhccCC--------h--------------hHHHHHHHHHH
Q 013228 140 SMLRIATWTLSNFCA----GKPK--PIFDQVRPALPALAQLVHSND--------K--------------EVMTDACRALF 191 (447)
Q Consensus 140 ~~~~~a~~~L~~l~~----~~~~--~~~~~~~~~l~~l~~ll~~~~--------~--------------~v~~~al~~l~ 191 (447)
++...++..+..++. .... ........+++.++..+..++ + ..+..+..+|.
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 777778777777765 2211 111233555566665543211 0 12333444555
Q ss_pred HhccCCcHHHHHHHHhCcHHHHHHhcC--CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-----CCc
Q 013228 192 YLSEGTNDEIQAVIEAGVCPRLVELLG--HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH-----NHK 264 (447)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-----~~~ 264 (447)
.++....... . .-+.+.+-..+. ..++..+..++++++.++.........-.-..+++.+..+... + .
T Consensus 439 ~l~~~~~~~~---l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~ 513 (1049)
T 3m1i_C 439 YLTHLNVIDT---E-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-K 513 (1049)
T ss_dssp HHHHHCHHHH---H-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-H
T ss_pred HHHccCHHHH---H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-h
Confidence 5542222111 1 112344444454 3678899999999999986543221111111244455544322 2 4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHH--------HHHHHcC
Q 013228 265 KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI--------KYLVREG 336 (447)
Q Consensus 265 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~~~~ 336 (447)
+.++..++|+++.++..-..+.+ .+. .+++.++..+.++++.++..|++++.+++........ .++ ..
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~-~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~ 589 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWN-FLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QT 589 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHH-HHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH-HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HH
Confidence 55566799999987652111111 222 2566777778777899999999999999974332211 111 11
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 367 (447)
++..+..++..-+.+-.....+++..++...
T Consensus 590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 3333444455545544566677777776543
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.91 E-value=0.0027 Score=65.66 Aligned_cols=389 Identities=6% Similarity=0.063 Sum_probs=202.9
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR-----EDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
.++..+..+++++..++.+...+..+.++ ..+++.|+.++.+ +. ..++..++|+++..+.--..... +.. .
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~~~-~L~-~ 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAHWN-FLR-T 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHCHH-HHH-H
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhccHH-HHH-H
Confidence 57899999999999998764222122222 2367788887753 22 34556777999887652111111 111 3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHh------cCCHHHHHHHhc---cccchhHHHHHHHHHHHhc
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS------EEALIPLLTQLN---KHAKLSMLRIATWTLSNFC 153 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~l~~~l~---~~~~~~~~~~a~~~L~~l~ 153 (447)
++..|+..+.++++.++..|++++.+||.. ++..+.. ...++.+++.+. ...+......+..+++.+.
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456677777777899999999999999964 4444432 123444444332 2234556677888888888
Q ss_pred CCCCCCC--hhhHhhhHHHHHH----hhc--cCC---------hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 013228 154 AGKPKPI--FDQVRPALPALAQ----LVH--SND---------KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL 216 (447)
Q Consensus 154 ~~~~~~~--~~~~~~~l~~l~~----ll~--~~~---------~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 216 (447)
...+... ......+++.+.. +.. +.+ .......++++..++..-......... .+.+.++.+
T Consensus 618 ~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~ 696 (1023)
T 4hat_C 618 SEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNMLQL 696 (1023)
T ss_dssp TTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHH
T ss_pred HhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHH
Confidence 7764322 1122333332222 221 011 122233344443333211110000000 112222222
Q ss_pred cCC------------C-----Cc------hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc----cC----Cch
Q 013228 217 LGH------------P-----SP------SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI----HN----HKK 265 (447)
Q Consensus 217 L~~------------~-----~~------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~----~~----~~~ 265 (447)
.+. + .+ .+++..++.+.......+.. + .+...+++.+++.+- .. +++
T Consensus 697 y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~-~-~~~~~~~~~l~~~vl~dY~~~~~~~r~~ 774 (1023)
T 4hat_C 697 YRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL-D-DVVKVLVEPLLNAVLEDYMNNVPDARDA 774 (1023)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH-H-HHHHHTHHHHHHHHHHHHHHSCGGGCCH
T ss_pred HHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH-H-HHHHHhHHHHHHHHHHHHHhCChhhccH
Confidence 100 0 11 12333344444333222211 1 122235555544331 11 134
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---CchhHHHHHHHHHHHhcCCCCH-------HHHHHHHHc
Q 013228 266 SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN---AEFDIKNWAARAISNATFGGTH-------EQIKYLVRE 335 (447)
Q Consensus 266 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~---~~~~v~~~a~~aL~~l~~~~~~-------~~~~~l~~~ 335 (447)
++-.-....+..+...-.+....+++. ++..-+.+++. +.|+.|..-...+..+...+-. +..+.
T Consensus 775 ~vL~l~s~iv~~~~~~~~~~~~~il~~-vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~---- 849 (1023)
T 4hat_C 775 EVLNCMTTVVEKVGHMIPQGVILILQS-VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL---- 849 (1023)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHH-HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH----
Confidence 444444444444443333444444444 55555666664 4688888888888877654322 22222
Q ss_pred CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHH----HhcCCCHHHHHHH
Q 013228 336 GCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIEN----LRSHDNDEIHEKS 411 (447)
Q Consensus 336 ~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~----l~~~~~~~v~~~a 411 (447)
+++.++-..++.+.++...+++++..++......+. ..+...|-+.-+...+.. +..+...-.++.-
T Consensus 850 -~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~ 920 (1023)
T 4hat_C 850 -FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGN--------VPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQ 920 (1023)
T ss_dssp -HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCS--------SHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHH
T ss_pred -HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence 577777888999999999999999999987664211 124555555555555444 3444555556666
Q ss_pred HHHHHHhcC
Q 013228 412 VKILETYWC 420 (447)
Q Consensus 412 ~~~l~~~~~ 420 (447)
..+|..++.
T Consensus 921 ~~~l~~l~~ 929 (1023)
T 4hat_C 921 ALLLMKLIS 929 (1023)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677777665
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.75 E-value=0.0078 Score=63.07 Aligned_cols=312 Identities=12% Similarity=0.104 Sum_probs=170.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCC--hh--
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK-LLASPSDDIREQAVCALGNVAADS--AR-- 115 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~i~~~a~~~L~~l~~~~--~~-- 115 (447)
++.+.+++....++.++..++.++.+....-+ ...+.+...++.++. ++ .++.++..++.+|..+.... +.
T Consensus 196 ~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~ 271 (1049)
T 3m1i_C 196 FKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDND 271 (1049)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchh
Confidence 34445555544447899999999998776333 233555667777773 44 37899999999999998542 21
Q ss_pred -HHHHHHhcCCHHHHHHHhc-----------------cccchhHHHHHHHHHHHhcCCC------CCCChhhHhhhHHHH
Q 013228 116 -CRDLVLSEEALIPLLTQLN-----------------KHAKLSMLRIATWTLSNFCAGK------PKPIFDQVRPALPAL 171 (447)
Q Consensus 116 -~~~~~~~~~~l~~l~~~l~-----------------~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~l 171 (447)
....+.. .++.++..+. .+.+.+.....+..+..+.... +.........+++.+
T Consensus 272 ~~~~~~~~--l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 349 (1049)
T 3m1i_C 272 LIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1049)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 1111111 1122222110 1224444444444443332110 111122335567777
Q ss_pred HHhhccCChhHHHHHHHHHHHhcc----CC--cHHHHHHHHhCcHHHHHHhcCCCCc----------------------h
Q 013228 172 AQLVHSNDKEVMTDACRALFYLSE----GT--NDEIQAVIEAGVCPRLVELLGHPSP----------------------S 223 (447)
Q Consensus 172 ~~ll~~~~~~v~~~al~~l~~l~~----~~--~~~~~~~~~~~~~~~L~~lL~~~~~----------------------~ 223 (447)
+.....++.++...++..+..++. .+ ....+.++ ..+++.++..+..+++ .
T Consensus 350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~ 428 (1049)
T 3m1i_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ 428 (1049)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence 777777788888888877777664 11 11111111 1345556665533210 1
Q ss_pred hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHH
Q 013228 224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH-NHKKSIKTDACWTISNITAGNSEH-IQAVIDAGLIGPLVNL 301 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~-~~~l~~~~~~~~L~~~ 301 (447)
.+..+..+|..++...+...-. -+.+.+-..+.+ ..+...+..++++++.++...... ...+.. .+++.+..+
T Consensus 429 ~~~~~~~~L~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l 503 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDL 503 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHH
Confidence 2334555666665333221111 123444444543 227788999999999987642222 112111 144444443
Q ss_pred Hhc-----CchhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 302 LQN-----AEFDIKNWAARAISNATFG--GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 302 l~~-----~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
... +++.++..++++++.++.. ..++... .+++.++..+.+.++.++..|+.++.++++.+..
T Consensus 504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 321 2345555688999877642 1222222 2577788888888999999999999999986543
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.60 E-value=0.0017 Score=66.91 Aligned_cols=306 Identities=8% Similarity=-0.021 Sum_probs=167.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh--hHHHHHHhcCCHH
Q 013228 50 REDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA--RCRDLVLSEEALI 127 (447)
Q Consensus 50 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~ 127 (447)
+.+ +.++..++.++......-+ ...+++.+.++.+..++.+ ++++..|+.+|..+..... ..+..+...=.+.
T Consensus 204 ~~~-~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~ 278 (980)
T 3ibv_A 204 AKN-YGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 278 (980)
T ss_dssp TTC-HHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence 356 8899999999999987322 3456666788888888865 8999999999999984432 2222222110011
Q ss_pred HHHHHhcc-ccchhHHHHHHHHH-------HHhcCCCCC-CC-------hhhHhhhHHHHHHhhccCChhHHHHHHHHHH
Q 013228 128 PLLTQLNK-HAKLSMLRIATWTL-------SNFCAGKPK-PI-------FDQVRPALPALAQLVHSNDKEVMTDACRALF 191 (447)
Q Consensus 128 ~l~~~l~~-~~~~~~~~~a~~~L-------~~l~~~~~~-~~-------~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~ 191 (447)
..+..+.. ..|.++.+..+..+ ..+ ...+. .. ......+++.++.++.+++.++...++..+.
T Consensus 279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~ 357 (980)
T 3ibv_A 279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS 357 (980)
T ss_dssp HHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 12222211 34555554433333 222 21111 11 1334678899999999998888777766665
Q ss_pred HhccC-----C----cHHHHHHHHhCcHHHHHHhcCCCCc----------------hhHhHHHHHHHHhhcCChhhHHH-
Q 013228 192 YLSEG-----T----NDEIQAVIEAGVCPRLVELLGHPSP----------------SVLTRALQTVVNIAAGDDFQTQC- 245 (447)
Q Consensus 192 ~l~~~-----~----~~~~~~~~~~~~~~~L~~lL~~~~~----------------~v~~~a~~~l~~l~~~~~~~~~~- 245 (447)
.+... . ......++ ..+++.++..+..++. +.|+.....+..++.-.+...-.
T Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 358 DLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 54421 0 11111121 1345555555543211 23333332222222222221111
Q ss_pred HHhcCChHHHHHhhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcC----ChHHHHHHHh-----cCchhHHHH
Q 013228 246 IINCGALPYLLGLLI---HNHKKSIKTDACWTISNITAGNSEHIQAVI-DAG----LIGPLVNLLQ-----NAEFDIKNW 312 (447)
Q Consensus 246 ~~~~~~l~~l~~~l~---~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~----~~~~L~~~l~-----~~~~~v~~~ 312 (447)
+.+ -+.+.+...+. +. +...++.+..+++.++.+-........ ... +++.+..++. .+++.++..
T Consensus 437 ~~~-~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~ 514 (980)
T 3ibv_A 437 MYS-AITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL 514 (980)
T ss_dssp HHH-HHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred HHH-HHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 110 11122223332 23 677888999999998774322111000 011 3444555554 567999999
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHcCChHHHHh--hccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 313 AARAISNATFGG--THEQIKYLVREGCIKPLCD--LLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 313 a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~--ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
++++++..+..- .++.... +++.++. .+.++++.++..|..++.++++.+..
T Consensus 515 ~~~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 515 YMEILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 999999987642 1222221 3455555 55567788999999999999987764
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00099 Score=58.10 Aligned_cols=186 Identities=13% Similarity=0.102 Sum_probs=124.8
Q ss_pred HHHHhccccchhHHHHHHHHHHHhcCCCCCCC-----hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH----
Q 013228 129 LLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI-----FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTND---- 199 (447)
Q Consensus 129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~---- 199 (447)
+-+.| .+.++..|..++..+..+....+... ........+.+...+.+.+..++..++.++..++.....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45666 78899999999999888775542211 111244556677788899999999999999888753221
Q ss_pred -HHHHHHHhCcHHHHHHh-cCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 200 -EIQAVIEAGVCPRLVEL-LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 200 -~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
......-..+++.|+.- +.+....++..+..++..++...... . .+++.+...+.+. ++.++..++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 11112223467777754 78888999999988887776433211 1 1245677778888 99999999888887
Q ss_pred HhcC-CHH--HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 278 ITAG-NSE--HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 278 l~~~-~~~--~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
+... +.. .....+. .+++.+..++.+.++.||..|..++..+...
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 7641 111 0112222 2566677888999999999999999888664
No 99
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0028 Score=55.18 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=121.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCCCCch-hhhh--ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-----hhH
Q 013228 4 GVWSDDNNMQLEATTHIRKLLSNARSAPT-EEVI--PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS-----EDT 75 (447)
Q Consensus 4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~--~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-----~~~ 75 (447)
.|.|.++..|..|+..+.++......... .... -....+.+.+.+.+.+ ..++..++.++..++.... ...
T Consensus 17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 57899999999999999998875422111 1111 1235666777887777 8999999999998875211 111
Q ss_pred HHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228 76 KVVIDHGAVPIFVK-LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA 154 (447)
Q Consensus 76 ~~~~~~~~i~~L~~-ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (447)
....-..+++.|+. .+.+..+.++..+..++..++....... . +++.++..+ .+.++.++..++..|..+..
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-~-----~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-Q-----SVELVIPFF-EKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-H-----HHHHHGGGG-GCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-H-----HHHHHHHHH-hccCHHHHHHHHHHHHHHHH
Confidence 11122345677775 4778889999999888887764322111 1 134444455 67788888888888877765
Q ss_pred CC--CCCC-hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 013228 155 GK--PKPI-FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG 196 (447)
Q Consensus 155 ~~--~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~ 196 (447)
.. .... ......+++.+..++.+.++.||..|..++..+-..
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 42 1111 223355677788899999999999999998877644
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0048 Score=52.44 Aligned_cols=181 Identities=12% Similarity=0.044 Sum_probs=119.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhc----CCCCCCC
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFC----AGKPKPI 160 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~----~~~~~~~ 160 (447)
+.+...+-+.+..-+..++..|.......+ ...+...+.+-..+.+-..+++..+...++.+|..+. ...+...
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 445566666677777777777766554332 1222111112222221113567777777777766653 3323333
Q ss_pred hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 240 (447)
......++|.|+.-+.++.+.++..+-.++..+..-.+. ..+++.++.-+.+.++..|..++..++.+.....
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 334467899999999999999999888877666532111 1356778888899999999999999999874322
Q ss_pred hhHHHHHhcCCh---HHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228 241 FQTQCIINCGAL---PYLLGLLIHNHKKSIKTDACWTISNITA 280 (447)
Q Consensus 241 ~~~~~~~~~~~l---~~l~~~l~~~~~~~v~~~a~~~l~nl~~ 280 (447)
.. ....+ +.+.+++.+. +..||..|..++..+-.
T Consensus 200 ~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 200 IS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp SG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred CC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 11 23467 9999999998 99999999999987655
No 101
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.46 E-value=0.029 Score=57.86 Aligned_cols=340 Identities=11% Similarity=0.044 Sum_probs=178.6
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhh-----hccCCHHHHHHhhc-----CCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228 8 DDNNMQLEATTHIRKLLSNARSAPTEEV-----IPFGVVPRFVEFLM-----REDYPQLQFEAAWALKNIVSGTSEDTKV 77 (447)
Q Consensus 8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~-----~~~~~v~~L~~ll~-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 77 (447)
.++.....|+.+|..++.+-.. ....+ .-..+++.+..+++ .+. +.|+..++++++..+..-..
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~-~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h-p~V~~~~~~~l~rys~~~~~---- 528 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRG-PDAFFNEVDKSPTVLSQILALVTTSQVCRHPH-PLVQLLYMEILVRYASFFDY---- 528 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCS-GGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC-HHHHHHHHHHHHHTGGGGGT----
T ss_pred CCHHHHHHHHHHHHHHHhhccc-cccccCcccchhHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHhc----
Confidence 3467778888888887765321 11111 01124455666655 444 89999999999998873322
Q ss_pred HHhCCChHHHHHhh------CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------ccch----
Q 013228 78 VIDHGAVPIFVKLL------ASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------HAKL---- 139 (447)
Q Consensus 78 ~~~~~~i~~L~~ll------~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------~~~~---- 139 (447)
....++.++..+ .++++.++..|+.++.++|..... .+ .+.++.+++.+.. ..+.
T Consensus 529 --~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~---~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~ 601 (980)
T 3ibv_A 529 --ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK---QV--VNYTESSLAMLGDLLNISVSPVTDMDAPV 601 (980)
T ss_dssp --CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT---TC--SSSHHHHHHHTTGGGCCCCCCCCC--CSS
T ss_pred --CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH---Hh--hhHHHHHHHHHHHhhcCcCCCCCcccccc
Confidence 123455555543 346788999999999999965432 22 2446666666531 0100
Q ss_pred ------------hHHHHHHHHHHHhcCCC---CCCChhhHhhhHHHHHH----hhccC----Chh-HHHHHHHHHHHhcc
Q 013228 140 ------------SMLRIATWTLSNFCAGK---PKPIFDQVRPALPALAQ----LVHSN----DKE-VMTDACRALFYLSE 195 (447)
Q Consensus 140 ------------~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~l~~----ll~~~----~~~-v~~~al~~l~~l~~ 195 (447)
+-+.....+++.+.... +.........+++.++. .+... +.. -..+.+.+++.++.
T Consensus 602 ~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lak 681 (980)
T 3ibv_A 602 PTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAK 681 (980)
T ss_dssp CCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhc
Confidence 12334445555554332 22233334555554443 33222 211 23356777777774
Q ss_pred CCcH-------HHHHHHHhCcHHHHHHhcC--CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh
Q 013228 196 GTND-------EIQAVIEAGVCPRLVELLG--HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS 266 (447)
Q Consensus 196 ~~~~-------~~~~~~~~~~~~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 266 (447)
.-.. ....+. .+.+.+...+. ..+..++..++.++..+...-..... ..++.++..+-+.....
T Consensus 682 gf~~~~~~~~p~~~~f~--~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~~~~ 754 (980)
T 3ibv_A 682 GFPARGSEEVAWLASFN--KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDML-----PKVPQLISILLNSIDMN 754 (980)
T ss_dssp TSCSCC-CCCSHHHHHH--HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHCCTT
T ss_pred cCCcccCCCCcHHHHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHHhcCCHH
Confidence 4211 111111 34555655564 36788999999999999875543322 45666666554321333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHHHhcCc---------hhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013228 267 IKTDACWTISNITAGNSEHIQAVIDA---GLIGPLVNLLQNAE---------FDIKNWAARAISNATFGGTHEQIKYLVR 334 (447)
Q Consensus 267 v~~~a~~~l~nl~~~~~~~~~~l~~~---~~~~~L~~~l~~~~---------~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 334 (447)
--....|.++.+...-...+..+++. .++..+..++..+. ..+++.-...+..+..++-......-.+
T Consensus 755 e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n 834 (980)
T 3ibv_A 755 ELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEEN 834 (980)
T ss_dssp THHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcc
Confidence 45566777877776211112222221 13444445555321 2355555556666665431111100011
Q ss_pred cCChH----HHHhhcc-CCCHHHHHHHHHHHHHHHHhh
Q 013228 335 EGCIK----PLCDLLL-CADPEIVTVFLKGLEKILKVG 367 (447)
Q Consensus 335 ~~~l~----~L~~ll~-~~~~~~~~~a~~~l~~l~~~~ 367 (447)
.+.++ .++.+-. .+++..++.|+..+.+++..-
T Consensus 835 ~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~ 872 (980)
T 3ibv_A 835 QVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLW 872 (980)
T ss_dssp HTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 23333 3333322 367889999999999999864
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.42 E-value=0.0009 Score=61.97 Aligned_cols=244 Identities=13% Similarity=0.077 Sum_probs=158.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHHhCCChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSED--TKVVIDHGAVPIFVKLL--AS--------PSDDIREQAVCALG 107 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll--~~--------~~~~i~~~a~~~L~ 107 (447)
..+.|+.-|-++. .++|..|+.+|..+....... +....+....-.++.++ +. --..||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 5677777788899 799999999999987632210 00000112233333332 11 12579999999999
Q ss_pred HhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHH
Q 013228 108 NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDAC 187 (447)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al 187 (447)
.+ ..-+.- ..++..++..+ .....+++..++..|.++. +- -.. ..++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~-DL-L~~---Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLK-EF-VED---KDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTG-GG-CCC---HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHH-HH-HHH---HHHHHHHHHhhcCCcccHHHHHHH
Confidence 98 554432 33455555444 5667899999999999992 11 111 688899999999999999999999
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC--chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCch
Q 013228 188 RALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS--PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKK 265 (447)
Q Consensus 188 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 265 (447)
.+|.-++ .+ .... .++..+...|.+-+ ..-....+..|+.++...... ..+...+|.|..+++++ -.
T Consensus 321 etLiPIA-~p-~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP-IT-DSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC-CS-STHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc-ch-hhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999998 22 2222 34566666664422 223344566777777655321 12247889999999999 99
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHH
Q 013228 266 SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS 318 (447)
Q Consensus 266 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~ 318 (447)
.||..+..++..+. .......+ ..+++-.++++++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 99999999988776 22222222 222344567788877777764
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.41 E-value=0.0016 Score=55.35 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=117.6
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH----hcCCCCchhHhHHHHHHHHhhcC----Chh
Q 013228 170 ALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE----LLGHPSPSVLTRALQTVVNIAAG----DDF 241 (447)
Q Consensus 170 ~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~----lL~~~~~~v~~~a~~~l~~l~~~----~~~ 241 (447)
.+...+-+.|..-+..++..|.......+.. +. ..++.+++ .+.+++..+...++.++..+... ...
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~---~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRS---LL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH---HH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHH---HH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3455555667777777777776655333221 11 12333333 33467888888888888776421 100
Q ss_pred hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
... --..-++|.|+.-+.++ ...+|..+-.++..++. .++. .+++.+++-+.+.+...|..++..+..+
T Consensus 125 ~~~-~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 125 MSQ-EEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CCH-HHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 101 00123678999999888 88899888777766654 2222 2566677888889999999999999888
Q ss_pred cCCCCHHHHHHHHHcCCh---HHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228 321 TFGGTHEQIKYLVREGCI---KPLCDLLLCADPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 321 ~~~~~~~~~~~l~~~~~l---~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 368 (447)
....... ....+ +.+..++.+.|..++.+|+.++..+.....
T Consensus 195 i~~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 195 ITNAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 6532111 23468 999999999999999999999998887543
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.40 E-value=0.00074 Score=62.52 Aligned_cols=246 Identities=17% Similarity=0.123 Sum_probs=157.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc--CCHHHHHHHhcc---------ccchhHHHHHHHHHHH
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSE--EALIPLLTQLNK---------HAKLSMLRIATWTLSN 151 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~l~~~l~~---------~~~~~~~~~a~~~L~~ 151 (447)
..+.|+.-|-++..++|..|+.+|..+.............. +..-.++..+.- ..-..+++.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45677777788999999999999999874332110000111 223333333321 1124799999999999
Q ss_pred hcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHH
Q 013228 152 FCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQT 231 (447)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~ 231 (447)
+ ..-+.. ..++..++..+..+..+++..++-.|..+..--.. -.++++.++..|.+.+++|+..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~------Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED------KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC------HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH------HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 9 554443 34555555666888999999999999988211111 23568888999999999999999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228 232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHK-KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK 310 (447)
Q Consensus 232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~ 310 (447)
|.-++ .+..... ++..+-..|.+-++ ..........|+.++...+. .......+|.|...+.+.-+.||
T Consensus 323 LiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 323 LCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred hhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence 99888 2222232 33345555543212 22233445566666653321 01123579999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 013228 311 NWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLE 361 (447)
Q Consensus 311 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~ 361 (447)
..++.++..+. +...... ...++|-+++++++..+..+..
T Consensus 393 ~AVL~TL~tfL---~~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS---EESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC---CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 99999998887 2222222 2334667788888888877774
No 105
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.39 E-value=0.045 Score=47.51 Aligned_cols=294 Identities=14% Similarity=0.136 Sum_probs=173.9
Q ss_pred HHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-cCChhHHH
Q 013228 106 LGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-SNDKEVMT 184 (447)
Q Consensus 106 L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~ 184 (447)
|.+|..+++..-+-+.+.+++..+...+ +.++.++.+..+..|...+... .....-..+.+|.++..++ ++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 4445555555566677888899888888 7888899999999998887543 2222234778898888775 77899999
Q ss_pred HHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-------CCchhHhHHHHHHHH-------hhc-------------
Q 013228 185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-------PSPSVLTRALQTVVN-------IAA------------- 237 (447)
Q Consensus 185 ~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-------~~~~v~~~a~~~l~~-------l~~------------- 237 (447)
..-..++|...+.....+.-+..|.+..|...+.. .+..-+..||.+++| +..
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 99999999999888777777788999998887632 223334445554444 321
Q ss_pred CC--hhhHHHHHhcCChHHHHHhhccCC-----chhHHHHHHHHHHHHhcCC---HHHH----HHHHHcCChHHHHHHHh
Q 013228 238 GD--DFQTQCIINCGALPYLLGLLIHNH-----KKSIKTDACWTISNITAGN---SEHI----QAVIDAGLIGPLVNLLQ 303 (447)
Q Consensus 238 ~~--~~~~~~~~~~~~l~~l~~~l~~~~-----~~~v~~~a~~~l~nl~~~~---~~~~----~~l~~~~~~~~L~~~l~ 303 (447)
+. ..+...+++..++..|+..|+-+. --++|.......--+.+.. .+.. ..+-+.+.+-.++-.+.
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s 503 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS 503 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence 01 123334566677778888775431 2345555544444333321 0100 01112333444433332
Q ss_pred ----c-Cc-------hhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhh
Q 013228 304 ----N-AE-------FDIKNWAARAISNATFGG-THEQIKYLVREGCIKPLCDLLLCA--DPEIVTVFLKGLEKILKVGE 368 (447)
Q Consensus 304 ----~-~~-------~~v~~~a~~aL~~l~~~~-~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~~ 368 (447)
. .+ ..+.+.+...|..+.... +..+... ..-.++.=.++|++. .|.....++..-.++++.++
T Consensus 504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh--~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP 581 (619)
T 3c2g_A 504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQ--YSYSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP 581 (619)
T ss_dssp HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH--TTTTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh--heeeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence 1 11 123344555555554322 2222111 112244445667664 46666667777777776655
Q ss_pred hhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228 369 AEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418 (447)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (447)
... .... ---..++-+.+|.|+|+.+.|..++.++
T Consensus 582 ~~A-------------d~W~--i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 582 TRA-------------DIWT--IDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp THH-------------HHSC--CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred chh-------------ccce--echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 432 1111 1134566778999999999999998876
No 106
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.39 E-value=0.019 Score=49.94 Aligned_cols=201 Identities=14% Similarity=0.067 Sum_probs=145.1
Q ss_pred HHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF----QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 202 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
+.+...+.+..|+..|..-+.+.|+.+..+++++.+.... ....+.. -.+.+..++..-+++++-..+..+|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4566779999999999998999999999999999865432 2333332 233444444433245666666666666
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhccCCCHHHHH
Q 013228 278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE---GCIKPLCDLLLCADPEIVT 354 (447)
Q Consensus 278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~~~~ 354 (447)
++.. +...+.++..+.+..+.+.++.++.++...|...+..+.... +.....++.. .+....-.++.+++.-++.
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 6554 566777888888899999999999999999999999887763 3333344433 3466777899999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228 355 VFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE 416 (447)
Q Consensus 355 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (447)
.+++.|+.++-...+... ..+.+.+..-++.+..|+.+++..++-.|=.+..
T Consensus 228 QSlKLLgelLldr~N~~v----------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTI----------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK 279 (341)
T ss_dssp HHHHHHHHHHHSGGGHHH----------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHH----------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence 999999999976554332 3455556667888889999988888777666544
No 107
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.39 E-value=0.063 Score=55.54 Aligned_cols=314 Identities=12% Similarity=0.118 Sum_probs=167.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhcC-ChhHHH
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF-VKLLASPSDDIREQAVCALGNVAAD-SARCRD 118 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~i~~~a~~~L~~l~~~-~~~~~~ 118 (447)
++.+..+|+.+.++++...++.+|+.+...-+ ...+++.+.++.+ ..++ +++.++..|+.+|..+... .+.+.+
T Consensus 208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~ 283 (1073)
T 3gjx_A 208 FQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE 283 (1073)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence 33344455444448888889999999987432 4567788888888 4666 4689999999999998854 222222
Q ss_pred HHHh--cCCHHHHHHHhc------------cccchhHHHHHHHHHHHhcCCCC-----C-CChhhHhhhHHHHHHhhccC
Q 013228 119 LVLS--EEALIPLLTQLN------------KHAKLSMLRIATWTLSNFCAGKP-----K-PIFDQVRPALPALAQLVHSN 178 (447)
Q Consensus 119 ~~~~--~~~l~~l~~~l~------------~~~~~~~~~~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~l~~ll~~~ 178 (447)
.+.. ...+..+-..+. ...|.+.....+..+..+..... . ........++..++.+-..+
T Consensus 284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~ 363 (1073)
T 3gjx_A 284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE 363 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence 2211 011111111111 22234555555556555443220 0 01112233444556666677
Q ss_pred ChhHHHHHHHHHHHhccC----C------------------cHHHHHHHH---hCcHHHHHHhcCCCCc----------h
Q 013228 179 DKEVMTDACRALFYLSEG----T------------------NDEIQAVIE---AGVCPRLVELLGHPSP----------S 223 (447)
Q Consensus 179 ~~~v~~~al~~l~~l~~~----~------------------~~~~~~~~~---~~~~~~L~~lL~~~~~----------~ 223 (447)
+.++.+.++..-..+... . ..+ ..+.. ..+...++..+..+.+ .
T Consensus 364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~ 442 (1073)
T 3gjx_A 364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV 442 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence 888877776654444321 0 011 11111 1233344444543321 0
Q ss_pred hHh------------HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcC-CHHHHHHH
Q 013228 224 VLT------------RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAG-NSEHIQAV 289 (447)
Q Consensus 224 v~~------------~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~-~~~~~~~l 289 (447)
+|. ..-.++..++.........+ .++.+.+.+..+ -+......++|+++.++.. .++.-..+
T Consensus 443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~ 518 (1073)
T 3gjx_A 443 VREFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF 518 (1073)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch
Confidence 111 11112222222111111111 223344333332 2588899999999999753 32222222
Q ss_pred HHcCChHHHHHHHhcC---c--hhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH
Q 013228 290 IDAGLIGPLVNLLQNA---E--FDIKNWAARAISNATFG--GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362 (447)
Q Consensus 290 ~~~~~~~~L~~~l~~~---~--~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~ 362 (447)
+- .+++.|+.+.... + ..++...+++++..... ..++..+. ++..|.+.+.+.++.++..|+.++..
T Consensus 519 Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~ 592 (1073)
T 3gjx_A 519 LV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIK 592 (1073)
T ss_dssp HH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred HH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22 2677777776643 2 23455566788776543 12333332 57788888888999999999999999
Q ss_pred HHHhhhh
Q 013228 363 ILKVGEA 369 (447)
Q Consensus 363 l~~~~~~ 369 (447)
++..+..
T Consensus 593 i~~~C~~ 599 (1073)
T 3gjx_A 593 IAQKCRR 599 (1073)
T ss_dssp HHHHTGG
T ss_pred HHHHHHH
Confidence 9987765
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.36 E-value=0.051 Score=47.28 Aligned_cols=240 Identities=10% Similarity=0.114 Sum_probs=164.1
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc----HHHHHHHH-hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTN----DEIQAVIE-AGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~----~~~~~~~~-~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 239 (447)
.+.+..|+..|..-+-+.+..+..++.++..... .....+.. ..++..|+..- .++++...+-..|..++. .
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir-~ 153 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIR-H 153 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHT-S
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHH-h
Confidence 5678888888888899999999999998886543 22333332 12333333333 344555555555554444 5
Q ss_pred hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCchhHHHHHHHH
Q 013228 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAG---LIGPLVNLLQNAEFDIKNWAARA 316 (447)
Q Consensus 240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~~~~L~~~l~~~~~~v~~~a~~a 316 (447)
+...+.++..+.+..+.+.+..+ +-++...|..++..+....+.....++..+ ++...-.++.++++-+|+.++..
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 66777788888888899999998 999999999999988776666666666533 57777888999999999999999
Q ss_pred HHHhcCCC-CHHH-HHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH--hch
Q 013228 317 ISNATFGG-THEQ-IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE--AEG 392 (447)
Q Consensus 317 L~~l~~~~-~~~~-~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~ 392 (447)
|+.+.... +... ..++.+..-+..++.+|++....++..|..++.-++.+..+. .++..++.. ...
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~----------~~I~~IL~~Nr~kL 302 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT----------QPILDILLKNQAKL 302 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC----------HHHHHHHHHTHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC----------hHHHHHHHHHHHHH
Confidence 99998742 2222 233334455888999999999999999999998888765443 234555542 344
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHh
Q 013228 393 LEKIENLRSHD--NDEIHEKSVKILETY 418 (447)
Q Consensus 393 ~~~l~~l~~~~--~~~v~~~a~~~l~~~ 418 (447)
++.|.++.... ++...+.-..++...
T Consensus 303 l~fl~~f~~d~~eDeqF~dEK~~lI~~I 330 (341)
T 1upk_A 303 IEFLSKFQNDRTEDEQFNDEKTYLVKQI 330 (341)
T ss_dssp HHHHHHTTTTC-CCSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcchhhHHHHHHHHHHHH
Confidence 56666665544 333433333344443
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.34 E-value=0.01 Score=49.30 Aligned_cols=188 Identities=12% Similarity=0.120 Sum_probs=126.3
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhc-------CCCCc--hh---HhHHHHHHHHhhcCChhhHHH
Q 013228 179 DKEVMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELL-------GHPSP--SV---LTRALQTVVNIAAGDDFQTQC 245 (447)
Q Consensus 179 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL-------~~~~~--~v---~~~a~~~l~~l~~~~~~~~~~ 245 (447)
+++.++.|+.-|+.--+.-++..-.+..+ |.+..|++=+ ..+.- .. .-.|+..+..++. +++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 45567777777766544444443344444 6555554332 22221 11 2334444555565 5556778
Q ss_pred HHhcCChHHHHHhhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228 246 IINCGALPYLLGLLIHNH----KKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA 320 (447)
Q Consensus 246 ~~~~~~l~~l~~~l~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l 320 (447)
++++++.-.|..+|.... -+.+|-.+.++++.+.. ++++.+..+++.+++|..++.++.++.-.+.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999999888888887542 35788899999999986 6789999999999999999999999999999999999888
Q ss_pred cCCCCHHHHHHHHH--------cCChHHHHh-hccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228 321 TFGGTHEQIKYLVR--------EGCIKPLCD-LLLCADPEIVTVFLKGLEKILKVGEA 369 (447)
Q Consensus 321 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~~~~~a~~~l~~l~~~~~~ 369 (447)
... .....++.. ..++..++. +.+++++.+.+.++.+..++.++...
T Consensus 173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 773 344443322 123333333 44567888999999988888766543
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.31 E-value=0.00011 Score=62.05 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=125.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCC
Q 013228 46 EFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125 (447)
Q Consensus 46 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~ 125 (447)
.++.+++ +.+|..++..+ ....+..++.++++.+|..++..|.
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------ 99 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------ 99 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence 4456777 89998888743 1234677888899999998886421
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 013228 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI 205 (447)
Q Consensus 126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 205 (447)
.+.+..++ .+++..++..++..+ . .+.+..+++++++.|+..+... +.
T Consensus 100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence 12233344 788888888877642 1 0135566788899999888762 11
Q ss_pred HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHH
Q 013228 206 EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285 (447)
Q Consensus 206 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~ 285 (447)
.+.+..+++++++.||..++..+ ..+.+..++.++ ++.||..++..+
T Consensus 148 ----~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~-d~~VR~aaa~~l---------- 194 (244)
T 1lrv_A 148 ----PGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDP-EPEVRRIVASRL---------- 194 (244)
T ss_dssp ----GGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence 12345677888999998887741 113455677777 999999887642
Q ss_pred HHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 013228 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360 (447)
Q Consensus 286 ~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l 360 (447)
..+.|..++.++++.||..++..+. .+.|..+ .++++.++..+...|
T Consensus 195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 2355777788889999999888752 2445556 888888888876543
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.23 E-value=9.5e-05 Score=62.51 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=40.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 82 (447)
.+++++++.++..++..+. ...+..++++++ +.||..++..|.
T Consensus 57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L~----------------- 99 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRLP----------------- 99 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTSC-----------------
T ss_pred HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHCC-----------------
Confidence 3557778888888877430 122556666777 777777775320
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHH
Q 013228 83 AVPIFVKLLASPSDDIREQAVCA 105 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~ 105 (447)
.+.|..++.++++.+|..++..
T Consensus 100 -~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 100 -REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp -SGGGGGTTTCSCHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHHh
Confidence 1345566667777777766653
No 112
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.12 E-value=0.3 Score=50.66 Aligned_cols=98 Identities=10% Similarity=0.100 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHcCCChh--hHHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCH
Q 013228 54 PQLQFEAAWALKNIVSGTSE--DTKVVIDHGAVPIFVKLLASP-----SDDIREQAVCALGNVAADSARCRDLVLSEEAL 126 (447)
Q Consensus 54 ~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~~-----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l 126 (447)
....+.++|+++.++..-.+ ....+. .+++.|+.+.+.+ ...++...+|+++..+..-....+.+. .++
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~--~vl 568 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK--TVV 568 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHH
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH--HHH
Confidence 68899999999999864332 222232 3577777776543 234555566888887643221112211 135
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhcCCC
Q 013228 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGK 156 (447)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (447)
..+++.+ .++++.++..|+.++..+|...
T Consensus 569 ~~L~~~m-~~~~~~vq~aA~~af~~i~~~C 597 (1073)
T 3gjx_A 569 NKLFEFM-HETHDGVQDMACDTFIKIAQKC 597 (1073)
T ss_dssp HHHHHHT-TCCSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHHH
Confidence 5566665 5667899999999999998764
No 113
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.11 E-value=0.042 Score=45.66 Aligned_cols=190 Identities=15% Similarity=0.086 Sum_probs=119.6
Q ss_pred chhHhHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHh-------hccCC-chhHHHHHHHH---HHHHhcCCHHHHHHH
Q 013228 222 PSVLTRALQTVVNIAAGDDFQTQCIINC-GALPYLLGL-------LIHNH-KKSIKTDACWT---ISNITAGNSEHIQAV 289 (447)
Q Consensus 222 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~l~~~-------l~~~~-~~~v~~~a~~~---l~nl~~~~~~~~~~l 289 (447)
++.|+.|+..|+.=-...++..-.+..+ |.+..|++= +..+. ....-..+|.+ +..+++ .++.+..+
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~F 93 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSAF 93 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHHH
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhHH
Confidence 3456666666655333334343444443 334443322 22210 11222333333 345554 56888899
Q ss_pred HHcCChHHHHHHHhcC-----chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228 290 IDAGLIGPLVNLLQNA-----EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 290 ~~~~~~~~L~~~l~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~ 364 (447)
++.++.-.|..+++.. .+.+|..+..+++.+...++++...++.+.++++...+.++.++.--+..|..++.+++
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 9998888888888743 36789999999999999999999999999999999999999999988899999999999
Q ss_pred HhhhhhhhhhhhcccccHHHHHHHHhchHH-HHHHHhcCCCHHHHHHHHHHHHHh
Q 013228 365 KVGEAEKNMDIAIGDVNQYAQLVEEAEGLE-KIENLRSHDNDEIHEKSVKILETY 418 (447)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~~l~~~~~~~v~~~a~~~l~~~ 418 (447)
..+....-.+. ..-+...-...+. .+..+..++++.+.+...++.-++
T Consensus 174 ~dd~GL~YiC~------t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 174 LDDTGLAYICQ------TYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp HSHHHHHHHTS------SHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHc------cHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 87766543322 1111111112222 233456677877765544444443
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.95 E-value=0.23 Score=45.53 Aligned_cols=248 Identities=10% Similarity=0.030 Sum_probs=146.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHH
Q 013228 50 REDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPL 129 (447)
Q Consensus 50 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l 129 (447)
.++ +..+..|+..+.......|+..+. ++..++.+.++.+..||.+|++.|..+|.+ ... .. +...|
T Consensus 39 kg~-~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i-~k-----iaDvL 105 (507)
T 3u0r_A 39 KGG-TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL-PR-----VADIL 105 (507)
T ss_dssp GSC-HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH-HH-----HHHHH
T ss_pred CCC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh-hh-----HHHHH
Confidence 445 799999999999999988887664 567899999999999999999999999987 322 22 35678
Q ss_pred HHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-CcHHHHHHHHhC
Q 013228 130 LTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG-TNDEIQAVIEAG 208 (447)
Q Consensus 130 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~-~~~~~~~~~~~~ 208 (447)
+++| +..+..-...+-.+|..+...++ .+.+..+..-+..+++.+++.++..|..-... ..+....-.+.-
T Consensus 106 ~QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~ 177 (507)
T 3u0r_A 106 TQLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEEL 177 (507)
T ss_dssp HHHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHH
T ss_pred HHHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHH
Confidence 8888 45554445555555555554321 44555566666667899999999888644421 111111122233
Q ss_pred cHHHHHHhcCCCCchhHhHHHHHHHHhhcCC-hhhHHHHHhcCChHHHHHhh------ccCCchhHHHHHHHHHHHHh--
Q 013228 209 VCPRLVELLGHPSPSVLTRALQTVVNIAAGD-DFQTQCIINCGALPYLLGLL------IHNHKKSIKTDACWTISNIT-- 279 (447)
Q Consensus 209 ~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~l~~~l------~~~~~~~v~~~a~~~l~nl~-- 279 (447)
++..+.+.|.+-...--...+.+|..+-... ....+.+ ++.+.... ... +.+.......|+....
T Consensus 178 i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~ 251 (507)
T 3u0r_A 178 ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPL 251 (507)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHH
Confidence 4566667776544444444555555543322 2222222 23333332 212 4444444444443322
Q ss_pred --c--CCHHHHHHHHHcCChHHHHHHHhcC-chhHHHHHHHHHHHhcCCCC
Q 013228 280 --A--GNSEHIQAVIDAGLIGPLVNLLQNA-EFDIKNWAARAISNATFGGT 325 (447)
Q Consensus 280 --~--~~~~~~~~l~~~~~~~~L~~~l~~~-~~~v~~~a~~aL~~l~~~~~ 325 (447)
. .+.....++.+. ++|.+-.+-... .++.+...+.++..++....
T Consensus 252 FS~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 252 FSKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp CBTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred hccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 1 244555555554 777554333321 23477788888888887654
No 115
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.92 E-value=0.014 Score=49.10 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=111.2
Q ss_pred hhHHHHHhcCChHHHHHhhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchhH
Q 013228 241 FQTQCIINCGALPYLLGLLIH----------NHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFDI 309 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v 309 (447)
...+.+ ..+++..|+.+|.. ..+......++.||..+.. +......++. .+.+..+...+.++++.+
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 112 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM 112 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 444555 34666666666632 1134667788888888855 4556666665 557888888888889999
Q ss_pred HHHHHHHHHHhcCCCCH----H-HHH------HHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228 310 KNWAARAISNATFGGTH----E-QIK------YLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIAI 377 (447)
Q Consensus 310 ~~~a~~aL~~l~~~~~~----~-~~~------~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 377 (447)
+..++..|..++....+ + ... ..-+..-...+++.++. .+.+....++..+..++...+......
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~--- 189 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV--- 189 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH---
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHH---
Confidence 99999888877765431 1 111 11233456778887874 566888889988999988766544322
Q ss_pred ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHH
Q 013228 378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKS 411 (447)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a 411 (447)
.++..|...|..+.+..+...+++++...-
T Consensus 190 ----~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 190 ----HIRSELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp ----HHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred ----HHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 267888899999999999998998876553
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.68 E-value=0.071 Score=43.95 Aligned_cols=144 Identities=16% Similarity=0.081 Sum_probs=102.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhc-CChhHHH
Q 013228 41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK-LLASPSDDIREQAVCALGNVAA-DSARCRD 118 (447)
Q Consensus 41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~i~~~a~~~L~~l~~-~~~~~~~ 118 (447)
++....+.+++. .++|..|+..|+.. ...+ ..++.+.. +..+++..|++.+..++..++. ..++
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 344445566777 79999999998888 3111 24566666 5566889999999999999984 3332
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~ 198 (447)
..++.+..-. .+++..+++.|...+.--+.. + ........++|.+-.+..+++.-|+....+.|..++...+
T Consensus 139 -----~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 -----KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp -----TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred -----HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 1345555555 888999999998877554432 1 1122235678888888889999999999999999998888
Q ss_pred HHHHHHHH
Q 013228 199 DEIQAVIE 206 (447)
Q Consensus 199 ~~~~~~~~ 206 (447)
+....+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665554
No 117
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.45 E-value=0.058 Score=48.94 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=113.5
Q ss_pred hhhHHHHHhcCChHHHHHhhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchh
Q 013228 240 DFQTQCIINCGALPYLLGLLIH----------NHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFD 308 (447)
Q Consensus 240 ~~~~~~~~~~~~l~~l~~~l~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~ 308 (447)
....+.+. .+++..|+.+|.. ..+......++.||..+... ......++. ...+..+...+.+..+.
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~ 177 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPN 177 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchH
Confidence 34455555 4667777777631 11346778888899888554 456666665 55788899988889999
Q ss_pred HHHHHHHHHHHhcCCCCHHH-HHH----------HHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 013228 309 IKNWAARAISNATFGGTHEQ-IKY----------LVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIA 376 (447)
Q Consensus 309 v~~~a~~aL~~l~~~~~~~~-~~~----------l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 376 (447)
++..|...|.-++....++. ... ..+..-...++..++. .+.+....++..+..++...+......
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~-- 255 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV-- 255 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH--
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHH--
Confidence 99999999988887543111 111 1234557788888887 567888888988999988765544322
Q ss_pred cccccHHHHHHHHhchHHHHHHHhcCCCHHHHHH
Q 013228 377 IGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEK 410 (447)
Q Consensus 377 ~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~ 410 (447)
.++..|...|..+.+..+...+++++...
T Consensus 256 -----~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 256 -----HIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp -----HHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred -----HHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 25778889999999999988888877543
No 118
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.34 E-value=0.035 Score=48.20 Aligned_cols=173 Identities=17% Similarity=0.251 Sum_probs=118.8
Q ss_pred HHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHH
Q 013228 190 LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKT 269 (447)
Q Consensus 190 l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~ 269 (447)
+.++..++++.+..+++..++..+...+..++.++.+..+..+-..+.... .+..- -...+|.++..+.-..+.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~-L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTP-LENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSC-CTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhcc-ccccchHHHHHhccCCCcceEE
Confidence 345666788888999999999999999999999999999999988775332 11111 1246788888776443889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-------chhHHHHHHHHHHH-------hcC------CC-----
Q 013228 270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA-------EFDIKNWAARAISN-------ATF------GG----- 324 (447)
Q Consensus 270 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~-------~~~v~~~a~~aL~~-------l~~------~~----- 324 (447)
...+.|+|...+.....+..+..|.++.|...+... +..-+..|+..++| +.. ++
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999998877777778899999999887631 23334455555544 332 11
Q ss_pred ---CHHHHHHHHHcCChHHHHhhccCCC---H---HHHHHHHHHHHHHH
Q 013228 325 ---THEQIKYLVREGCIKPLCDLLLCAD---P---EIVTVFLKGLEKIL 364 (447)
Q Consensus 325 ---~~~~~~~l~~~~~l~~L~~ll~~~~---~---~~~~~a~~~l~~l~ 364 (447)
+..+...+++.+++..|+.+|+-+. + +++...+..+.-+.
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl 472 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL 472 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence 2234455666678888888886432 2 44544444443333
No 119
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.33 E-value=0.24 Score=43.18 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=104.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH----HHHHhhCC-CCHHHHHHHHHHHHHhhcCCh
Q 013228 40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVP----IFVKLLAS-PSDDIREQAVCALGNVAADSA 114 (447)
Q Consensus 40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~----~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~ 114 (447)
.+..+.++++-+. +.+.-++..+.-++. ++.....+.+.+.-. .+...+.+ ..+..+-.++++++|+.....
T Consensus 104 ~l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 104 QLQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred HHHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence 3566667664444 556677777777666 566555555433223 33344433 356678899999999987765
Q ss_pred hHHHHHHhcCCHHHHHHHhc---cccchhHHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhc-cCChhHHHHHHHH
Q 013228 115 RCRDLVLSEEALIPLLTQLN---KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVH-SNDKEVMTDACRA 189 (447)
Q Consensus 115 ~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~ 189 (447)
.+..+... ...++..+. .+.+..++..++..+.|++... ..........++..+..+++ ..|.+....++.+
T Consensus 181 -g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 181 -GQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp -HHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred -hHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 45555432 344444432 3457788888888888887543 11122223345555556664 3588999999999
Q ss_pred HHHhccCCcHHHHHHHHh-CcHHHHHHhcCC
Q 013228 190 LFYLSEGTNDEIQAVIEA-GVCPRLVELLGH 219 (447)
Q Consensus 190 l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~ 219 (447)
++++...+.+. ..+.+. ++-..+-+....
T Consensus 258 LGtL~~~~~~~-~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 258 LGTLISDDSNA-VQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHHTTCHHH-HHHHHHTTHHHHGGGGGGC
T ss_pred HHHHHhCChhH-HHHHHHcCHHHHHHHHHhC
Confidence 99999765543 334443 444444444443
No 120
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.31 E-value=0.17 Score=46.36 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=88.3
Q ss_pred cchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 013228 137 AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL 216 (447)
Q Consensus 137 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 216 (447)
.+...++-|+..+.......|. .....+..++.++.+.|..||..|++.|-.+|.. +... .+...|.++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence 3578888899999888876543 3366788899999999999999999999999976 2222 457889999
Q ss_pred cCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228 217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI 278 (447)
Q Consensus 217 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl 278 (447)
|..+++.-...+-.+|..+...++.. .+..+..-+.++ ++.+|..+...|..-
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTK 161 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHH
Confidence 99888777666666676666555422 233344444445 678888877777543
No 121
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.98 E-value=0.27 Score=44.66 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=109.8
Q ss_pred hhHHHHHhcCChHHHHHhhcc----C------CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchhH
Q 013228 241 FQTQCIINCGALPYLLGLLIH----N------HKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFDI 309 (447)
Q Consensus 241 ~~~~~~~~~~~l~~l~~~l~~----~------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v 309 (447)
...+.+. .+++..|+.+|.. + .+......++.||..+... ......++. .+.+..+...+.+..+.+
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~ 116 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM 116 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 3444443 3556666665531 1 1456677888888888554 455666665 457888888888888999
Q ss_pred HHHHHHHHHHhcCCCCHHH-HH----------HHHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228 310 KNWAARAISNATFGGTHEQ-IK----------YLVREGCIKPLCDLLL-CADPEIVTVFLKGLEKILKVGEAEKNMDIAI 377 (447)
Q Consensus 310 ~~~a~~aL~~l~~~~~~~~-~~----------~l~~~~~l~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 377 (447)
+..++..|..++....++. .. ..-+..-...+++.+. +.+.+....++..+..++...+......
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~--- 193 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV--- 193 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH---
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH---
Confidence 9999988877776543211 11 1123345667888776 4566888889999999988776544332
Q ss_pred ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHH
Q 013228 378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEK 410 (447)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~ 410 (447)
.++..|...|..+.+..+....++++...
T Consensus 194 ----~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 194 ----HIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp ----HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred ----HHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 26788999999999999998888887544
No 122
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.89 E-value=0.16 Score=41.91 Aligned_cols=145 Identities=15% Similarity=0.144 Sum_probs=101.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC-CCCCCChh
Q 013228 84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA-GKPKPIFD 162 (447)
Q Consensus 84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~ 162 (447)
++....+..++..++|..|+..|+.+ ... .+ .++.+...+..+.+..|++.+..++..++. ..+..
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---KE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---HH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---HH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 34444566677889999999998887 311 11 244444435567888999999999999985 33332
Q ss_pred hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh
Q 013228 163 QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ 242 (447)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 242 (447)
.++.+.....+++..++..|...+.--+...... .....+++.+-.+..+++..|++...+.|..++..+|+.
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 5677889999999999999988764322211100 001124677777788899999999999999999999877
Q ss_pred HHHHHh
Q 013228 243 TQCIIN 248 (447)
Q Consensus 243 ~~~~~~ 248 (447)
...+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 123
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.83 E-value=0.27 Score=52.11 Aligned_cols=283 Identities=10% Similarity=0.035 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcC-----ChhHHHHHHhcCCH
Q 013228 54 PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL--ASPSDDIREQAVCALGNVAAD-----SARCRDLVLSEEAL 126 (447)
Q Consensus 54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~i~~~a~~~L~~l~~~-----~~~~~~~~~~~~~l 126 (447)
...|.+|-..|.++-. ++ .+...+...| .+.++.+|..|+..|.+.... ++..+..+.
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 6788888888877644 22 1333344333 346889999999999988632 233333332
Q ss_pred HHHHHHhccc------cchhHHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC---
Q 013228 127 IPLLTQLNKH------AKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG--- 196 (447)
Q Consensus 127 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~--- 196 (447)
..++..+... .+..++...+.++..++... |.. ..++++.++.++++ ++.....++.+|..+++.
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 2344444322 34677788888998888765 322 35678888888866 455567777777777532
Q ss_pred ----CcHHHHHH---HHh---CcHHHHHHhcCC-------------------CCchhHhHHHHHHHHhhcCChhhHHHHH
Q 013228 197 ----TNDEIQAV---IEA---GVCPRLVELLGH-------------------PSPSVLTRALQTVVNIAAGDDFQTQCII 247 (447)
Q Consensus 197 ----~~~~~~~~---~~~---~~~~~L~~lL~~-------------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 247 (447)
...+...+ +.. .+++.+..++.+ .+..++..++.++.+...-.+. ..+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence 11111111 111 223333333422 1234666777777766543331 2233
Q ss_pred hcC--ChHHHHHhhccCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCchhHHHH
Q 013228 248 NCG--ALPYLLGLLIHNHKKSIKTDACWTISNITAGN--SEHIQAVIDA---GLIGPLVNLLQ--------NAEFDIKNW 312 (447)
Q Consensus 248 ~~~--~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~--~~~~~~l~~~---~~~~~L~~~l~--------~~~~~v~~~ 312 (447)
+.. .++.+..++. ++.++..|+.+|..++... ++....++.. ..+..++.... ..+.++.+.
T Consensus 245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 332 5666666654 4578999999999998743 3333333321 11234444432 124566677
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH-----------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228 313 AARAISNATFGGTHEQIKYLVR-----------EGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 313 a~~aL~~l~~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
.+..+..+.. . ...++. .++++.+..+..+++..+...++.....+++.
T Consensus 322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 7777766652 1 111111 13467777777777777777777766666654
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.71 E-value=1.5 Score=45.82 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=109.8
Q ss_pred HHHHHHHhccc---cchhHHHHHHHHHHHh----cCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228 126 LIPLLTQLNKH---AKLSMLRIATWTLSNF----CAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN 198 (447)
Q Consensus 126 l~~l~~~l~~~---~~~~~~~~a~~~L~~l----~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~ 198 (447)
+..+..++... .++.++..+..+++.+ |...+.........+...+...+...+..-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 34445555321 2445566666665555 43333333334456666677777777888888999999999742
Q ss_pred HHHHHHHHhCcHHHHHHhcCC-------CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHH
Q 013228 199 DEIQAVIEAGVCPRLVELLGH-------PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTD 270 (447)
Q Consensus 199 ~~~~~~~~~~~~~~L~~lL~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~ 270 (447)
..++.|.+++.. ....++..|+++|.++....+.... +.+++++. ...+.++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence 235666677632 2346788899999999876653322 35666663 2338899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCHH
Q 013228 271 ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN-AEFDIKNWAARAISNATFGGTHE 327 (447)
Q Consensus 271 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~ 327 (447)
|+..|... ..+.. .+..+...+.. .+..|.......|.+++....|.
T Consensus 534 A~~~Lm~t-~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 534 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHH-CcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 98888653 22223 34445566664 57888888888898988876653
No 125
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.20 E-value=0.39 Score=40.15 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=88.1
Q ss_pred HHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCCh
Q 013228 16 ATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----E------DYPQLQFEAAWALKNIVSGTSEDTKVVI-DHGAV 84 (447)
Q Consensus 16 a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i 84 (447)
-+..|...+..++..-.+.+ ..+++..|+..|.. + .+.+.+..++.||..+.. +......+. ..+.+
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i 98 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHH
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHH
Confidence 34444444444322224555 45677778877642 1 125778899999999998 444444444 45688
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hH-HHHH----------HhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSA-RC-RDLV----------LSEEALIPLLTQLNKHAKLSMLRIATWTLSNF 152 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (447)
..+...+.++++.++..++..|..+|..+. .. ...+ .+..-..+++..+..+.+.+.+..+...+-.+
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999986543 11 2221 12234556777665455556666666666556
Q ss_pred cCCCC
Q 013228 153 CAGKP 157 (447)
Q Consensus 153 ~~~~~ 157 (447)
....+
T Consensus 179 i~~~~ 183 (233)
T 2f31_A 179 ITPAE 183 (233)
T ss_dssp HTTCC
T ss_pred HCCCC
Confidence 55543
No 126
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.04 E-value=0.56 Score=42.49 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=92.6
Q ss_pred HHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCCh
Q 013228 16 ATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----------EDYPQLQFEAAWALKNIVSGTSEDTKVVI-DHGAV 84 (447)
Q Consensus 16 a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i 84 (447)
.+..|+..+...+..-.+.+. .+++..|+..|.. ..+...+..++.||..+.. +......+. ....+
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHH
Confidence 444555444443222245555 5678888888741 1125788999999999998 444444444 45788
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hH-HHHH----------HhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228 85 PIFVKLLASPSDDIREQAVCALGNVAADSA-RC-RDLV----------LSEEALIPLLTQLNKHAKLSMLRIATWTLSNF 152 (447)
Q Consensus 85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (447)
..|...+.++.+.++..++..|..+|..+. .. ...+ .+..-..+++..+....+.+.+..+...+-.+
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999996553 11 2221 22344677788875555667777666666666
Q ss_pred cCCCCC
Q 013228 153 CAGKPK 158 (447)
Q Consensus 153 ~~~~~~ 158 (447)
....+.
T Consensus 245 i~~~~d 250 (383)
T 3eg5_B 245 ITPAEE 250 (383)
T ss_dssp HTTCCC
T ss_pred HcCCCC
Confidence 665543
No 127
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.25 E-value=0.26 Score=42.99 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=71.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh---hHHH
Q 013228 44 FVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH--GAVPIFVKLLASPSDDIREQAVCALGNVAADSA---RCRD 118 (447)
Q Consensus 44 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~---~~~~ 118 (447)
+...+.++..+..+..++++++|+.. ++..+..+... .+++.+...+.+++..++..++..+.|++...- .. +
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-~ 229 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-E 229 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-H
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-h
Confidence 33444444346779999999999998 67777776653 344555555556789999999999999983210 00 1
Q ss_pred HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
. ....+..+...+....|.+....++.+|.++...
T Consensus 230 ~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 230 G--KAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp H--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 1 0112444455554556788888888899888865
No 128
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.01 E-value=2.4 Score=35.73 Aligned_cols=88 Identities=8% Similarity=0.121 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL 90 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 90 (447)
+.+...+.....++.+..+. +. ..+++.++.+..+++ .++|...+..+...+...++... ..++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~----ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE----LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-----HVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG----GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHh----HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46666666666655542111 11 235666666655555 77888887777777754433222 245667777
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 013228 91 LASPSDDIREQAVCALGNV 109 (447)
Q Consensus 91 l~~~~~~i~~~a~~~L~~l 109 (447)
++++++.+.+.++.+..++
T Consensus 99 l~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 7777777777777766665
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.76 E-value=1.8 Score=39.23 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=90.6
Q ss_pred HHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----CC------CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228 17 TTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----ED------YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI 86 (447)
Q Consensus 17 ~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 86 (447)
+..|...+..++..-.+.+. .+++..|+..|.. +. +.+.+..++.||..+..........+...+++..
T Consensus 26 L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~ 104 (386)
T 2bnx_A 26 LESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILL 104 (386)
T ss_dssp HHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHH
T ss_pred HHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHH
Confidence 44444444443122244554 4667777777642 11 2577899999999999844444444444578899
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCh-hH-HHHH----------HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228 87 FVKLLASPSDDIREQAVCALGNVAADSA-RC-RDLV----------LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA 154 (447)
Q Consensus 87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (447)
+...+.++++.++..++..|..+|..+. .. ...+ .+..-..+++..+..+.+.+.+..++..+-.+..
T Consensus 105 l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~ 184 (386)
T 2bnx_A 105 LVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 184 (386)
T ss_dssp HHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHC
Confidence 9999998999999999999999996543 11 2221 2233566788888656667777777766666666
Q ss_pred CCCC
Q 013228 155 GKPK 158 (447)
Q Consensus 155 ~~~~ 158 (447)
..+.
T Consensus 185 ~~~d 188 (386)
T 2bnx_A 185 PAEE 188 (386)
T ss_dssp TCSC
T ss_pred CCCC
Confidence 6543
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.07 E-value=1.1 Score=34.91 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=55.7
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH-DNDEIHEKSVKIL 415 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~-~~~~v~~~a~~~l 415 (447)
++..|..-+.+.++.++..|+..|..+++++... |...+....+++.+..+... .++.|++++..++
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 4566777778889999999999999999987653 45555556666777776554 6789999999999
Q ss_pred HHhcC
Q 013228 416 ETYWC 420 (447)
Q Consensus 416 ~~~~~ 420 (447)
..+-.
T Consensus 121 ~~W~~ 125 (163)
T 1x5b_A 121 VEWSE 125 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.78 E-value=14 Score=38.54 Aligned_cols=166 Identities=14% Similarity=0.177 Sum_probs=106.6
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhc----CChhHHHHHHhcCCHHHHHHHhc---cccchhHHHHHHHHHHH
Q 013228 83 AVPIFVKLLAS----PSDDIREQAVCALGNVAA----DSARCRDLVLSEEALIPLLTQLN---KHAKLSMLRIATWTLSN 151 (447)
Q Consensus 83 ~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~L~~ 151 (447)
.+..+..++.+ .++.++..++.+++.+.. ..+.| ....++.+.+.+. ...+.+-+..++.+|.|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 34555566655 467788888888877752 21111 1122455554442 33456667778999999
Q ss_pred hcCCCCCCChhhHhhhHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc--CCCCc
Q 013228 152 FCAGKPKPIFDQVRPALPALAQLVHS-------NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL--GHPSP 222 (447)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~ 222 (447)
+-.. ..++.+.+++.. ....++..|+++|..+....+...+ +.++++. ...+.
T Consensus 467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS 528 (1056)
T ss_dssp HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence 8752 356677777642 2356888999999999866544332 5566776 44678
Q ss_pred hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228 223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG 281 (447)
Q Consensus 223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~ 281 (447)
++|..|+..|-.. +|.. ..+..+...+..+.+..|+......|.+++..
T Consensus 529 EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 529 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 8998888877431 2211 13445777777755889999999999999874
No 132
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=91.24 E-value=17 Score=38.53 Aligned_cols=269 Identities=8% Similarity=0.035 Sum_probs=148.8
Q ss_pred CHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCC-----ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhh
Q 013228 40 VVPRFVEFLM-REDYPQLQFEAAWALKNIVSG-----TSEDTKVVIDHGAVPIFVKLLAS---PSDDIREQAVCALGNVA 110 (447)
Q Consensus 40 ~v~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~---~~~~i~~~a~~~L~~l~ 110 (447)
....+...|. ...++.+|..|+..|.+.... +++.+.. ++..+++.+...... .+..++...+.++..++
T Consensus 46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~-Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia 124 (1204)
T 3a6p_A 46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY-LKNSVMELIANGTLNILEEENHIKDALSRIVVEMI 124 (1204)
T ss_dssp THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH-HHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence 4555555443 333389999999999987642 2333333 333344544443211 46888988999999887
Q ss_pred cCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---CCCChhh-------H----hhhHHHHHHhhc
Q 013228 111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---PKPIFDQ-------V----RPALPALAQLVH 176 (447)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~-------~----~~~l~~l~~ll~ 176 (447)
...-.. .=.+.++.+++.+.. +......++.+|..++.+. ....... . ..+++.+...++
T Consensus 125 ~~d~p~----~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~ 198 (1204)
T 3a6p_A 125 KREWPQ----HWPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQ 198 (1204)
T ss_dssp HHHSTT----TCTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHhCcc----cchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432100 002356777777733 4455677888888876431 1111110 1 133444444443
Q ss_pred c-------------------CChhHHHHHHHHHHHhccCCcHHHHHHHHhC--cHHHHHHhcCCCCchhHhHHHHHHHHh
Q 013228 177 S-------------------NDKEVMTDACRALFYLSEGTNDEIQAVIEAG--VCPRLVELLGHPSPSVLTRALQTVVNI 235 (447)
Q Consensus 177 ~-------------------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~v~~~a~~~l~~l 235 (447)
. .+..+...++.++.+....-+. ..+.+.. +++.+..++. ++.++..|+.||..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i 274 (1204)
T 3a6p_A 199 ENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIA 274 (1204)
T ss_dssp HHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 2 2345677788888776654332 2233332 6777777665 578899999999999
Q ss_pred hcCC--hhhHHHHHhc---CChHHHHHhhc-------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------c
Q 013228 236 AAGD--DFQTQCIINC---GALPYLLGLLI-------HNHKKSIKTDACWTISNITAGNSEHIQAVID-----------A 292 (447)
Q Consensus 236 ~~~~--~~~~~~~~~~---~~l~~l~~~l~-------~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-----------~ 292 (447)
+... +.....++.. ..+..++.... +..+.++.+..+..+..+.. . ...++. .
T Consensus 275 ~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~ 350 (1204)
T 3a6p_A 275 VSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFG 350 (1204)
T ss_dssp HTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHH
T ss_pred HhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHH
Confidence 8644 2221122221 11223444432 11135566666666666652 1 222222 1
Q ss_pred CChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228 293 GLIGPLVNLLQNAEFDIKNWAARAISNATFG 323 (447)
Q Consensus 293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~ 323 (447)
++++.++.+...++..+...++.....+...
T Consensus 351 ~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 351 KYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 3577777777777878888877777666554
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.08 E-value=3.6 Score=35.27 Aligned_cols=150 Identities=9% Similarity=0.096 Sum_probs=94.2
Q ss_pred hhHHHHHHhhccC------ChhHHHHHHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228 166 PALPALAQLVHSN------DKEVMTDACRALFYLSEGTNDEIQAVI-EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238 (447)
Q Consensus 166 ~~l~~l~~ll~~~------~~~v~~~al~~l~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 238 (447)
.-+..+..+++++ +......++..|..++..-..-.+.+- +...+..|+ +.....+.+++.|.++|+...+.
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence 3344455566554 455677788888887743322222222 334444444 33446677999999999999999
Q ss_pred ChhhHHHHHhc--CChHHHHHhhcc----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chh
Q 013228 239 DDFQTQCIINC--GALPYLLGLLIH----N--HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFD 308 (447)
Q Consensus 239 ~~~~~~~~~~~--~~l~~l~~~l~~----~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~ 308 (447)
+|.....+.+. .++..+..-|.. + ....+.+.-+.+|.-|...+.. + ....+..|.+++... ++.
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHH
Confidence 99887776653 334444433322 0 1345667777778777665421 2 244678888888877 899
Q ss_pred HHHHHHHHHHHhc
Q 013228 309 IKNWAARAISNAT 321 (447)
Q Consensus 309 v~~~a~~aL~~l~ 321 (447)
++..++..+..+.
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999998888776
No 134
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.87 E-value=8.7 Score=34.49 Aligned_cols=88 Identities=8% Similarity=0.120 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228 11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL 90 (447)
Q Consensus 11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 90 (447)
+.+...+..+.+++-+. ++. .-.++++.++.+-..++ .++|...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 35677777777765542 111 22457888888887777 89999999988888764444432 345677788
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 013228 91 LASPSDDIREQAVCALGNV 109 (447)
Q Consensus 91 l~~~~~~i~~~a~~~L~~l 109 (447)
+.+.++.+.+.++.+..++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 8888888888888887776
No 135
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.67 E-value=2.8 Score=35.92 Aligned_cols=134 Identities=14% Similarity=0.109 Sum_probs=86.9
Q ss_pred hHhHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHHH
Q 013228 224 VLTRALQTVVNIAAGDDFQTQCII-NCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID--AGLIGPLVN 300 (447)
Q Consensus 224 v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--~~~~~~L~~ 300 (447)
....|+..|.-++.......+.+- +...+..|+ +.... ...++..++.+++...+.+|..+..+.+ ..++..++.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 456677777777765554444333 323333344 22334 6789999999999999999998888776 345555555
Q ss_pred HHhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHH
Q 013228 301 LLQN-------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA--DPEIVTVFLKGLEKILK 365 (447)
Q Consensus 301 ~l~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~a~~~l~~l~~ 365 (447)
-|.. ....+++.-+.+|.-|+... . .+. ...+..|.+++... ++.++..++..+..++.
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTS--E---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--T---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcCh--H---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 4442 23356666777777777753 1 111 34567777777666 88999999999999985
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.15 E-value=0.75 Score=34.76 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=54.7
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE 416 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (447)
++..|..-+.+.++.++..|+..|..++++++.. |...+....+++.+..+....++.|++++..++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4666777778888999999999999999887653 4444545556666666666678999999999998
Q ss_pred HhcC
Q 013228 417 TYWC 420 (447)
Q Consensus 417 ~~~~ 420 (447)
.+..
T Consensus 111 ~W~~ 114 (140)
T 3ldz_A 111 EWTD 114 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.94 E-value=1.2 Score=34.87 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=56.8
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc------CCCHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS------HDNDEIHEK 410 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~------~~~~~v~~~ 410 (447)
++..|..-+.+.++.++..|+..|..+++++... |...+....+++.|..+.. ..++.|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 4666777788899999999999999999987654 5666666777788888764 246899999
Q ss_pred HHHHHHHhcC
Q 013228 411 SVKILETYWC 420 (447)
Q Consensus 411 a~~~l~~~~~ 420 (447)
+..++..+..
T Consensus 119 il~li~~W~~ 128 (171)
T 1juq_A 119 VIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=89.91 E-value=1.2 Score=34.07 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=57.6
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC------CCHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH------DNDEIHEK 410 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~------~~~~v~~~ 410 (447)
++..|..-+.+.++.++..|+..|..+++++... |...+....+++.|..+... .+++|+++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 106 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence 4666777778899999999999999999987653 56667667778888887653 47899999
Q ss_pred HHHHHHHhcC
Q 013228 411 SVKILETYWC 420 (447)
Q Consensus 411 a~~~l~~~~~ 420 (447)
+..++..+..
T Consensus 107 il~li~~W~~ 116 (148)
T 1mhq_A 107 VIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 139
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=89.85 E-value=2.1 Score=32.09 Aligned_cols=78 Identities=8% Similarity=0.143 Sum_probs=57.1
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH-hchHHHHHHHhcCCC--------HHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE-AEGLEKIENLRSHDN--------DEI 407 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~l~~~~~--------~~v 407 (447)
+++.|..=|.+.++.++..++.+|..|+..+... |...+.+ ...++.+.++...++ ..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence 5778888888888999999999999999876543 4555553 344555555544433 679
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 013228 408 HEKSVKILETYWCGRVAGP 426 (447)
Q Consensus 408 ~~~a~~~l~~~~~~~~~~~ 426 (447)
+.+|.++++-+|+++...+
T Consensus 118 R~~AkEl~~ll~d~~~~~~ 136 (140)
T 1vdy_A 118 RETAHETISAIFSEENGSG 136 (140)
T ss_dssp HHHHHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 9999999999998776543
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=89.36 E-value=1.3 Score=33.79 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=57.3
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc------CCCHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS------HDNDEIHEK 410 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~------~~~~~v~~~ 410 (447)
++..|..-+.+.++.++..|+..|..+++++... |...+....+++.|..+.. ..+++|+.+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 4666777778899999999999999999987764 5666666777788887764 357899999
Q ss_pred HHHHHHHhcC
Q 013228 411 SVKILETYWC 420 (447)
Q Consensus 411 a~~~l~~~~~ 420 (447)
...++..+..
T Consensus 117 il~li~~W~~ 126 (149)
T 3g2s_A 117 ILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.21 E-value=1.9 Score=32.47 Aligned_cols=72 Identities=4% Similarity=-0.000 Sum_probs=56.4
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~ 365 (447)
.+..+..-+.++++.++..|+..|-.+..++.+.....+....+++.|..++...++.++..++..+..-..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 455567777888999999999999888888777766666666677778888877788899888888776654
No 142
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.78 E-value=2.4 Score=32.27 Aligned_cols=73 Identities=8% Similarity=-0.094 Sum_probs=58.7
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHh
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~~ 366 (447)
.+..|..-+.+.++.++..|+..|-.+..++.+.....+....+++.|+.++.. .++.++..++..+..-...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999998888777777777788888888863 4678888888888776653
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.22 E-value=4.7 Score=30.65 Aligned_cols=72 Identities=10% Similarity=-0.063 Sum_probs=57.6
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~ 365 (447)
.+..|..-++++++.++..|+..|-.+..++.+.....+....+++.|+.++.. .++.++..++..+..-..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999998888777777777889889988864 366888888777766543
No 144
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=83.52 E-value=12 Score=33.52 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=85.9
Q ss_pred hHhHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228 224 VLTRALQTVVNIAA-GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302 (447)
Q Consensus 224 v~~~a~~~l~~l~~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l 302 (447)
.+...+.-+..++. .++. ++ .++++.++.+-.+. +.++|+..+..|...+....+... ..++.|..++
T Consensus 41 ~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL 109 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 44555555555433 2232 22 36788888888888 899999999999888764433221 2566788888
Q ss_pred hcCchhHHHHHHHHHHHhcC--------CCC-HHHHHHHHH--cCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228 303 QNAEFDIKNWAARAISNATF--------GGT-HEQIKYLVR--EGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 303 ~~~~~~v~~~a~~aL~~l~~--------~~~-~~~~~~l~~--~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 366 (447)
.++++.+.+.++.+..++-. ..+ .+.....++ ..+-..++.++++.+..++..+++.+..++-.
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 88889999888887777642 111 111111111 12345677778888999999999999998853
No 145
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.14 E-value=2.5 Score=32.80 Aligned_cols=71 Identities=4% Similarity=-0.036 Sum_probs=54.1
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~ 364 (447)
.+..|..-+.++++.++..|+..|-.+..++.+.....+....+++.|+.++.. .++.++..++..+..-.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 455577778888999999999999999988877777666666778888887765 56678877777665543
No 146
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=81.07 E-value=24 Score=32.34 Aligned_cols=222 Identities=13% Similarity=0.058 Sum_probs=114.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-----hhhHH
Q 013228 2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGT-----SEDTK 76 (447)
Q Consensus 2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----~~~~~ 76 (447)
+.++.|+|+.-|...-..|+.+-.+- .. .+..+...+-..+.+.+-......-....+++++.+..+. ++.+.
T Consensus 168 l~lfdSeDpRERd~LktiLhrIY~Kf-~~-~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~ 245 (449)
T 2npp_B 168 LELFDSEDPRERDFLKTTLHRIYGKF-LG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKI 245 (449)
T ss_dssp HHTTTSSTHHHHHHHHHHHHHHHHSC-TT-THHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 55678888888888888887776552 22 2333333344455555533221233456777788877653 23332
Q ss_pred HHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228 77 VVIDHGAVPIFVKLLASPS-DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155 (447)
Q Consensus 77 ~~~~~~~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (447)
.+ ...|+.+...+. .....+-..++..+...++.....+ +..++..- ..++..-...-+.-+..+...
T Consensus 246 fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~eleeile~ 314 (449)
T 2npp_B 246 FL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEEILDV 314 (449)
T ss_dssp HH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhC-CCCCchHHHHHHHHHHHHHHh
Confidence 22 244555554432 2233344455555554444332221 23333333 222222222233344444433
Q ss_pred CCCCC-hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCC-----CCchhHh
Q 013228 156 KPKPI-FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA---GVCPRLVELLGH-----PSPSVLT 226 (447)
Q Consensus 156 ~~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~-----~~~~v~~ 226 (447)
-+... ......++..+.+.+.+++-.|.+.|+....| +. ...++.. .++|.+...|.. =+..++.
T Consensus 315 ~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~-i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~ 388 (449)
T 2npp_B 315 IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EY-IMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 388 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HH-HHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HH-HHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHH
Confidence 21111 12335667777788889999998888754422 11 1122221 345666665522 2467888
Q ss_pred HHHHHHHHhhcCChhh
Q 013228 227 RALQTVVNIAAGDDFQ 242 (447)
Q Consensus 227 ~a~~~l~~l~~~~~~~ 242 (447)
.+..++..+...++..
T Consensus 389 la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 389 LIYNALKLFMEMNQKL 404 (449)
T ss_dssp HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCHHH
Confidence 8888888777766644
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.01 E-value=4.7 Score=33.29 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=52.9
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR-SHDNDEIHEKSVKIL 415 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~~~~~v~~~a~~~l 415 (447)
++..|..-+.+.++.++..|+..|..+++++... |...+....+++.|..+. ...+++|++++..++
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4666777778899999999999999999987663 344454555555665553 346788999999998
Q ss_pred HHhcC
Q 013228 416 ETYWC 420 (447)
Q Consensus 416 ~~~~~ 420 (447)
..+..
T Consensus 114 ~~W~~ 118 (226)
T 3zyq_A 114 QAWAH 118 (226)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 148
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=80.43 E-value=5 Score=31.39 Aligned_cols=72 Identities=8% Similarity=-0.068 Sum_probs=55.9
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~ 365 (447)
.+..|..-+.+.++.++..|+..|-.+..++.......+.+..+++.|+.++.. .+..++..++..+..-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 355677778889999999999999999988766666677777788888888863 356888888777766543
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=79.66 E-value=5.7 Score=32.65 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=52.1
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR-SHDNDEIHEKSVKIL 415 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~~~~~v~~~a~~~l 415 (447)
++..|..-+.+.++.++..|+..|..+++++... |...+.....++.|..+. ...+++|++++..++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3555666677889999999999999999987653 344444455566666654 356789999999888
Q ss_pred HHhcC
Q 013228 416 ETYWC 420 (447)
Q Consensus 416 ~~~~~ 420 (447)
+.+-.
T Consensus 111 ~~W~~ 115 (220)
T 1dvp_A 111 QTWAY 115 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=79.57 E-value=6.6 Score=30.21 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=52.4
Q ss_pred ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH-HHHHhc---CCCHHHHHHH
Q 013228 337 CIKPLCDLLL-CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK-IENLRS---HDNDEIHEKS 411 (447)
Q Consensus 337 ~l~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l~~l~~---~~~~~v~~~a 411 (447)
++..|..-+. ..++.++..|+..|..+++++... |...+....+++. |..+.. .+...|++++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki 121 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKV 121 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 3556666665 478889999999999999987653 4555666666776 566553 3456899999
Q ss_pred HHHHHHhcC
Q 013228 412 VKILETYWC 420 (447)
Q Consensus 412 ~~~l~~~~~ 420 (447)
..++..+..
T Consensus 122 l~li~~W~~ 130 (157)
T 1elk_A 122 LNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 151
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=79.11 E-value=10 Score=28.04 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=62.7
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhh
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNM 373 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 373 (447)
++|.|+..+++.+..+...++..|..+- .. +++.+.+.+++.|.. ...+++..+.......
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~---W~ywil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIM---WKYWVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHH---HHHHHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChH---HHHHHHHHHHHcCCHH---
Confidence 5778999999999998888887777642 11 355566677777764 4455666665433221
Q ss_pred hhhcccccHHHHHHHHhchHHHHHHHhcCC-----CHHHHHHHHHHHHHhcCC
Q 013228 374 DIAIGDVNQYAQLVEEAEGLEKIENLRSHD-----NDEIHEKSVKILETYWCG 421 (447)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~-----~~~v~~~a~~~l~~~~~~ 421 (447)
....+ .+.|.++..++ ..++...|.++|++||++
T Consensus 93 ---------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 ---------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp ---------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred ---------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 12233 36677776664 578999999999999874
No 152
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=78.49 E-value=14 Score=38.01 Aligned_cols=186 Identities=14% Similarity=0.092 Sum_probs=107.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc---ccchhHHHHHHHHHH--HhcCCCC
Q 013228 83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK---HAKLSMLRIATWTLS--NFCAGKP 157 (447)
Q Consensus 83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~~a~~~L~--~l~~~~~ 157 (447)
++.-|+++--+..++||..|-.+|......-+..+..+ ++.+++.|.. +.+.+-.+-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 35567777778899999999999999886656555554 7788888855 444455555666544 11110 1
Q ss_pred CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC--------------------C----cHHHHHH---------
Q 013228 158 KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG--------------------T----NDEIQAV--------- 204 (447)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~--------------------~----~~~~~~~--------- 204 (447)
.........+++.+++....+.++++..+-.+...+... + ....+..
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 223444566777777776666666655544443333220 0 0000110
Q ss_pred -HH---hCcHHHHHHhc-CCCC--chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228 205 -IE---AGVCPRLVELL-GHPS--PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277 (447)
Q Consensus 205 -~~---~~~~~~L~~lL-~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n 277 (447)
.. .++...++... .+.. +.....+++.+.++....+. .....++..+++.+.++ .+.+|..|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 00 12333344544 3355 77777777776666532221 11123556788888888 99999999887755
Q ss_pred Hh
Q 013228 278 IT 279 (447)
Q Consensus 278 l~ 279 (447)
+.
T Consensus 363 il 364 (997)
T 1vsy_5 363 TC 364 (997)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 153
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=76.56 E-value=33 Score=28.81 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 013228 140 SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH 219 (447)
Q Consensus 140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 219 (447)
+.+-..+.-...+..+. .......+++.++.+..+.+.+++..+...+...+....+.. ...++.|..++.+
T Consensus 30 ~~kl~~L~qa~el~~~~---dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS---CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTT---TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcc---CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcC
Confidence 34555555555555443 123567888888888778889999999999988874443322 2457888888888
Q ss_pred CCchhHhHHHHHHHHhhc-------CChh---hHHHHHh--cCChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228 220 PSPSVLTRALQTVVNIAA-------GDDF---QTQCIIN--CGALPYLLGLLIHNHKKSIKTDACWTISNIT 279 (447)
Q Consensus 220 ~~~~v~~~a~~~l~~l~~-------~~~~---~~~~~~~--~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~ 279 (447)
+++.+.+.++.+.+++-. .++. ..+...+ ..+=..++.++.+. +..+|..+...+..+.
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHH
Confidence 889998888887776631 1110 0111111 01223445555555 6666666666655543
No 154
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=75.00 E-value=51 Score=30.25 Aligned_cols=254 Identities=14% Similarity=0.113 Sum_probs=123.8
Q ss_pred HHHHHHHHHccCC--CCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC
Q 013228 16 ATTHIRKLLSNAR--SAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS 93 (447)
Q Consensus 16 a~~~l~~l~~~~~--~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 93 (447)
....|.++..... ....+..++...+..|+.++.+++ +.-|...-.+|..+-..-...|..+.+. +-..+.+++..
T Consensus 137 VYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e 214 (449)
T 2npp_B 137 VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYE 214 (449)
T ss_dssp HHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence 3334445543321 233566677788999999999999 8888888888877765444444444332 22334444432
Q ss_pred -CCHHHHHHHHHHHHHhhcCC-----hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhh
Q 013228 94 -PSDDIREQAVCALGNVAADS-----ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPA 167 (447)
Q Consensus 94 -~~~~i~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 167 (447)
....-....+.+++.+..+- ++.+..+ ...++.+.+...-...-.....++..+...++. ....+
T Consensus 215 ~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L~~~v 285 (449)
T 2npp_B 215 TEHHNGIAELLEILGSIINGFALPLKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPV 285 (449)
T ss_dssp CSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG----GHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH----hHHHH
Confidence 12222224445555554321 1121111 112222221111111222333444444432211 11222
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHH
Q 013228 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI 246 (447)
Q Consensus 168 l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 246 (447)
+..|++.=-..+..-...-+.-+..+....+ .....+ ...++..+...+.+++..|.+.|+..+. ++.....+
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i-~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~~i~~li 359 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLI 359 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CHHHHHHH
Confidence 2223222222333333333444444443322 222222 2246777788888888888888876553 22222222
Q ss_pred Hhc--CChHHHHHhh-----ccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 013228 247 INC--GALPYLLGLL-----IHNHKKSIKTDACWTISNITAGNSEHIQ 287 (447)
Q Consensus 247 ~~~--~~l~~l~~~l-----~~~~~~~v~~~a~~~l~nl~~~~~~~~~ 287 (447)
.+. .++|.+...| .|. +..++..+..++.-+...++....
T Consensus 360 ~~n~~~IlPii~p~L~~~s~~HW-n~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 360 SDNAAKILPIMFPSLYRNSKTHW-NKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp HTTHHHHHHHHHHHHTSCTTCCS-STTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhchhhhHHhhHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHCHHHHH
Confidence 211 2445565554 234 678999998888887776665433
No 155
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=70.79 E-value=60 Score=29.25 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=33.0
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228 75 TKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119 (447)
Q Consensus 75 ~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 119 (447)
.+..++...+..|+.+++++|+.=|.....+|..+-..-...|..
T Consensus 122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~ 166 (403)
T 3fga_B 122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAY 166 (403)
T ss_dssp HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHH
Confidence 344455567888999999999999999999888876544444433
No 156
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=69.71 E-value=64 Score=29.10 Aligned_cols=233 Identities=11% Similarity=0.030 Sum_probs=123.5
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCC----
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGD---- 239 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~---- 239 (447)
...+-.|+.++.++|+.-|...-..|.++-..-... +.++...+-..+..++-. ....-....+.+++.+..+-
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~-R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 556777899999999999988888888776443333 223333334445555422 22333456677777776543
Q ss_pred -hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHH
Q 013228 240 -DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS 318 (447)
Q Consensus 240 -~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~ 318 (447)
++... + ....|+.+.+...-.......+.++..+...++.....+ +..|++.--..++.-...-+.-+.
T Consensus 207 keehk~-f----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele 276 (403)
T 3fga_B 207 KEEHKI-F----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 276 (403)
T ss_dssp CHHHHH-H----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred hHHHHH-H----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHH
Confidence 12222 1 123455555554233344555566665555444322221 222222211223322233334445
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH--HHhhhhhhhhhhhcccccHHHHHHHHhchHHHH
Q 013228 319 NATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKI--LKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKI 396 (447)
Q Consensus 319 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 396 (447)
.+....++.....+.. .+...+..++.+.+-.+.+.|+....|= +..-... .+.+. .-.++.|
T Consensus 277 ~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n-------------~~~Il-Pii~p~L 341 (403)
T 3fga_B 277 EILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN-------------AAKIL-PIMFPSL 341 (403)
T ss_dssp HHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT-------------HHHHH-HHHHHHH
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHh-------------HHHHH-HHHHHHH
Confidence 5555555554433221 2566777888899888888887664321 1110000 11111 1224555
Q ss_pred HHH-hcCCCHHHHHHHHHHHHHhcCCCC
Q 013228 397 ENL-RSHDNDEIHEKSVKILETYWCGRV 423 (447)
Q Consensus 397 ~~l-~~~~~~~v~~~a~~~l~~~~~~~~ 423 (447)
.+. .+|=++.|+..+..++..+.+.+.
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 443 556699999999999998765443
No 157
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.50 E-value=1.7 Score=35.99 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=49.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS 69 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 69 (447)
+.|++.++.+++.|+..|-.++...+..-..++.....+..|.++++...++.|+..++..+...+.
T Consensus 52 krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 52 KKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3567889999999998888887765344455666667777888888654447899988888877654
No 158
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=68.48 E-value=17 Score=37.43 Aligned_cols=216 Identities=12% Similarity=0.075 Sum_probs=116.3
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc----cCChhHHHHHHHHHH-----HhccC
Q 013228 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH----SNDKEVMTDACRALF-----YLSEG 196 (447)
Q Consensus 126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----~~~~~v~~~al~~l~-----~l~~~ 196 (447)
+..++++- .+.-.+++..|-.+|......-+... ..++|.+++.|+ ..+.+-.+-|+.+|. .....
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~----~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSY----GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHH----HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 45566654 55567899999999988886543333 445566666554 446666666776554 11211
Q ss_pred CcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh--hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHH
Q 013228 197 TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD--FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWT 274 (447)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~ 274 (447)
+-.. -..+++.|++....+++.++..+-.+...+..... .... .++... +.-+..+ +..+. .+...
T Consensus 210 d~~~-----~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~----~~~i~~~-d~~i~-~~~~~ 277 (997)
T 1vsy_5 210 DYKD-----IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVC-VISDQA----FLPLAPP-DGTIN-LQVEA 277 (997)
T ss_dssp CHHH-----HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGG----TGGGCCS-CSSTT-SHHHH
T ss_pred ChHH-----HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHH-HHHHHH----HhccCCC-cHHHH-HHHHH
Confidence 1111 12356677777777788888777666555543211 1000 111111 1223222 22221 11111
Q ss_pred HHHHhcCCHHHHHHHHH--cCChHHHHHHHh-cCc--hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC
Q 013228 275 ISNITAGNSEHIQAVID--AGLIGPLVNLLQ-NAE--FDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD 349 (447)
Q Consensus 275 l~nl~~~~~~~~~~l~~--~~~~~~L~~~l~-~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 349 (447)
..... ...++...+ .++...++++.+ ..+ ......++..+.++...-+.. ....++..+.+.+.+++
T Consensus 278 ~~~~~---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dh 349 (997)
T 1vsy_5 278 VKLAK---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKH 349 (997)
T ss_dssp HHHHT---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCC
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCC
Confidence 21111 111222221 235555666664 346 778888888866666432111 11124677888899999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013228 350 PEIVTVFLKGLEKILKV 366 (447)
Q Consensus 350 ~~~~~~a~~~l~~l~~~ 366 (447)
|.++..|+.++..++..
T Consensus 350 p~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 350 PEIIHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888764
No 159
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=65.39 E-value=14 Score=27.60 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=51.3
Q ss_pred ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC-ChHHHHhhccCCC--------HHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREG-CIKPLCDLLLCAD--------PEIVTVFLKGLEKIL 364 (447)
Q Consensus 294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~-~l~~L~~ll~~~~--------~~~~~~a~~~l~~l~ 364 (447)
+++.|.+-|+..++.++..|+..|..++..+.+.....+.+.- .|..+.++-...+ ..++..|-+++.-|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 5667888888888999999999999999999888877766532 2233332222222 257877777777766
Q ss_pred Hhh
Q 013228 365 KVG 367 (447)
Q Consensus 365 ~~~ 367 (447)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
No 160
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.57 E-value=2.3 Score=35.08 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=48.4
Q ss_pred ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 013228 3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS 69 (447)
Q Consensus 3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 69 (447)
+.|++.++.+++.|+..|-.+....+.....++.....+..|+.+++...++.|+..++..+...+.
T Consensus 49 krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 49 KKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4567888999999998888887764333445666667788888887654447888888877776653
No 161
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=63.61 E-value=30 Score=28.98 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=62.0
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc-------ccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228 91 LASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK-------HAKLSMLRIATWTLSNFCAGKPKPIFDQ 163 (447)
Q Consensus 91 l~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (447)
+.+.++..+-.++++++|+..+....+..+........++..+.. +.+..++..++..+.|++........
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 345578899999999999988776345555433223444554421 13556777888888888754311000
Q ss_pred HhhhHHHHHHhhc---------cCChhHHHHHHHHHHHhcc
Q 013228 164 VRPALPALAQLVH---------SNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 164 ~~~~l~~l~~ll~---------~~~~~v~~~al~~l~~l~~ 195 (447)
.......+..++. ..+++....++-+++++..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 0122233333333 2377888888889988884
No 162
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=60.98 E-value=17 Score=33.00 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=65.7
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc-------ccchhHHHHHHHHHHHhcCCC--CCCC
Q 013228 90 LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK-------HAKLSMLRIATWTLSNFCAGK--PKPI 160 (447)
Q Consensus 90 ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~--~~~~ 160 (447)
.+.+.++..+-.++++++|+-......+..+........+++.+.. ..+..++..++..+.|++... ....
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~ 349 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD 349 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred hcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch
Confidence 3345678899999999999987765334444332234556665531 224567778888888887543 1111
Q ss_pred hhhHhhhHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 013228 161 FDQVRPALPALAQLVH---------SNDKEVMTDACRALFYLSEGT 197 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~---------~~~~~v~~~al~~l~~l~~~~ 197 (447)
...++.+..++. ..+++....++-+++++....
T Consensus 350 ----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 350 ----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp ----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 223344555444 358889999999999998533
No 163
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=59.83 E-value=47 Score=29.83 Aligned_cols=184 Identities=10% Similarity=0.022 Sum_probs=94.4
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCCh---
Q 013228 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDD--- 240 (447)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~--- 240 (447)
...+-.|+.++.++|+.-|......+..+-..-.... .++...+-..+.+++.. ....-....+.+++.+..+-.
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R-~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PL 251 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLR-AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 251 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 5678889999999999999888888877654333332 33334444556666643 333445667888888776542
Q ss_pred --hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHH
Q 013228 241 --FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS 318 (447)
Q Consensus 241 --~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~ 318 (447)
+... ++ ...|+.+.+...-.........++..+...++..... ++..|++.--..+..-...-+.-+.
T Consensus 252 Keehk~-Fl----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 252 KEEHKI-FL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CHHHHH-HH----HHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cHHHHH-HH----HHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHHH
Confidence 2222 21 2344455544422233334445555554433332221 1222222211122221222233333
Q ss_pred HhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 013228 319 NATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360 (447)
Q Consensus 319 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l 360 (447)
.+....+++....+. ..+...+..++.+.+-++.+.|+...
T Consensus 322 eiLe~~~~~~f~~i~-~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 322 EILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHTCCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 444433444433321 12466677778888878877776554
No 164
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=57.88 E-value=15 Score=32.66 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=63.9
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-------cccchhHHHHHHHHHHHhcCCC--CCCC
Q 013228 90 LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-------KHAKLSMLRIATWTLSNFCAGK--PKPI 160 (447)
Q Consensus 90 ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-------~~~~~~~~~~a~~~L~~l~~~~--~~~~ 160 (447)
.+.+..+..+-.++++++|+-......+..+........+++.+. ...+..++..++..+.|++... ....
T Consensus 207 ~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~ 286 (362)
T 3l3f_X 207 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD 286 (362)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred hcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch
Confidence 334567889999999999998776533444432212334454442 1224567778888888887543 1111
Q ss_pred hhhHhhhHHHHHHhhc---------cCChhHHHHHHHHHHHhccC
Q 013228 161 FDQVRPALPALAQLVH---------SNDKEVMTDACRALFYLSEG 196 (447)
Q Consensus 161 ~~~~~~~l~~l~~ll~---------~~~~~v~~~al~~l~~l~~~ 196 (447)
....+.+..++. ..+++....++-+++++...
T Consensus 287 ----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 287 ----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp ----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 223344555544 35888999999999999853
No 165
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=54.39 E-value=1.2e+02 Score=27.18 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228 75 TKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119 (447)
Q Consensus 75 ~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 119 (447)
.+..++...+..|+.++.++|+.-|.....+|..+-..-...|..
T Consensus 167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~ 211 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAY 211 (392)
T ss_dssp HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567888999999999999999999888776433334443
No 166
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=53.78 E-value=58 Score=24.47 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=56.0
Q ss_pred HHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228 328 QIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS 401 (447)
Q Consensus 328 ~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~ 401 (447)
....+++.|++..+-.-|.- ++..++...+.+|.++= -. .+.+.++|.=+.+.-+..
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~-------------~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IH-------------KEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CC-------------HHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CC-------------HHHhhcCCCCcchhhhhc
Confidence 35667888888888777753 35588988888888761 10 466888888888888876
Q ss_pred CC--CHHHHHHHHHHHHHhc
Q 013228 402 HD--NDEIHEKSVKILETYW 419 (447)
Q Consensus 402 ~~--~~~v~~~a~~~l~~~~ 419 (447)
|+ .+++++.|..++.++.
T Consensus 116 ~~~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 116 NPKESKEVRASAKALVQKWT 135 (145)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHH
Confidence 65 5779999999999864
No 167
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=53.73 E-value=22 Score=27.28 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=53.0
Q ss_pred ChHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH-HHhhccC---CCHHHHHHHHHHHHHHHH
Q 013228 294 LIGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP-LCDLLLC---ADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 294 ~~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~~~~~a~~~l~~l~~ 365 (447)
.+..|..-++ +.++.++..|+..|-.+..++.+.....+.+..+++. |+.++.. .+..++..++..+..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3455667776 4788999999999999999887777777777777887 7777743 234788877777666544
No 168
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=52.32 E-value=28 Score=24.40 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=32.6
Q ss_pred HHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHhcC
Q 013228 384 AQLVEEAEGLEKIENLRSH-DNDEIHEKSVKILETYWC 420 (447)
Q Consensus 384 ~~~i~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~ 420 (447)
.+.+.+.+.=..+..|..| ++++|...|..++..+-.
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~ 84 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKR 84 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHH
Confidence 6788889999999999886 899999999999998764
No 169
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=46.03 E-value=1.5e+02 Score=25.76 Aligned_cols=180 Identities=12% Similarity=0.097 Sum_probs=104.8
Q ss_pred hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh-hc----c---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 013228 223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL-LI----H---NHKKSIKTDACWTISNITAGNSEHIQAVIDAGL 294 (447)
Q Consensus 223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~-l~----~---~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 294 (447)
.+++..++.+.......++. +.+ ....++.+++. |. + .+++++-.-.+.++..+...-.+.+..+.+. +
T Consensus 44 ~vKkeiLkLiet~i~~~~d~-~~v-~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~-V 120 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDP-QMV-AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-V 120 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCH-HHH-HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHH-HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH-H
Confidence 45566666666666544332 222 23456666543 21 1 1245666656666666644333344444444 5
Q ss_pred hHHHHHHHhc---CchhHHHHHHHHHHHhcCCC-------CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228 295 IGPLVNLLQN---AEFDIKNWAARAISNATFGG-------THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL 364 (447)
Q Consensus 295 ~~~L~~~l~~---~~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~ 364 (447)
++.-+++++. +-|+.|..-...|..+...+ .+++.+. +++.++...++.++++.+.++.++..++
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 5556666763 45788877777777665533 3333333 5888899999999999999999999999
Q ss_pred HhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH----hcCCCHHHHHHHHHHHHHhcC
Q 013228 365 KVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL----RSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~ 420 (447)
...++.. .+...|-+.-.+..++.+ ..+...--.+.-..+|.++|.
T Consensus 196 ~n~~~~~----------~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 196 QNVAQEE----------AAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHHHCH----------HHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCh----------HHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 8765421 134444444445555543 333333334455667777764
No 170
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=44.96 E-value=36 Score=25.83 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=48.0
Q ss_pred ChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH-HHHHhc---CCCHHHHHHH
Q 013228 337 CIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK-IENLRS---HDNDEIHEKS 411 (447)
Q Consensus 337 ~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l~~l~~---~~~~~v~~~a 411 (447)
++..|..-+.. .++.++..|+..|..+++++... |...+....++.. |..+.. +...+|++++
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~------------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~ki 121 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS------------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRI 121 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHH
Confidence 35555555553 56777788999999999887654 4444544445543 455543 2346899999
Q ss_pred HHHHHHhcC
Q 013228 412 VKILETYWC 420 (447)
Q Consensus 412 ~~~l~~~~~ 420 (447)
..++..+..
T Consensus 122 l~li~~Wa~ 130 (152)
T 3rru_A 122 LNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998865
No 171
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=44.15 E-value=47 Score=27.78 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHccCCCCchhhhhccCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHcCCChh-hHHHHHhCCChHHHHHh
Q 013228 13 QLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVE-FLMREDYPQLQFEAAWALKNIVSGTSE-DTKVVIDHGAVPIFVKL 90 (447)
Q Consensus 13 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~-ll~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~l 90 (447)
++-++..++-++.+. .. .+.+..++. .+.+.. +..+..++++++|+.. ++. .+..+........++..
T Consensus 71 ~fP~lDllRl~~~~~--~~------~~~l~~~l~~~~~~~~-~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~ 140 (253)
T 3gae_A 71 KTPAYDIVRLIVKKL--PY------SSDIKDYIEEGLGNKN-ITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFET 140 (253)
T ss_dssp CHHHHHHHHHHGGGC--SC------GGGGHHHHHHHTTCSS-HHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHH
T ss_pred cchHHHHHHHHHcCC--ch------HHHHHHHHHHhcCCCc-hhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHH
Confidence 344555555555543 11 123333332 233444 7899999999999998 445 45545433223444443
Q ss_pred hC----C----CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------ccchhHHHHHHHHHHHhcC
Q 013228 91 LA----S----PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------HAKLSMLRIATWTLSNFCA 154 (447)
Q Consensus 91 l~----~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------~~~~~~~~~a~~~L~~l~~ 154 (447)
+. + ++..++-.++..+.|++...-..+. +......++..+.. ..|++....++-+++++..
T Consensus 141 i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 141 IDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp SCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 32 1 2567888889999998732100000 12234455555532 2366777888888888875
Q ss_pred C
Q 013228 155 G 155 (447)
Q Consensus 155 ~ 155 (447)
.
T Consensus 218 ~ 218 (253)
T 3gae_A 218 V 218 (253)
T ss_dssp H
T ss_pred C
Confidence 3
No 172
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=42.26 E-value=53 Score=29.85 Aligned_cols=103 Identities=11% Similarity=0.089 Sum_probs=61.8
Q ss_pred cCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-------CchhHHHHHHHHHHHHhcCCHHHHHHH
Q 013228 217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN-------HKKSIKTDACWTISNITAGNSEHIQAV 289 (447)
Q Consensus 217 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~l 289 (447)
+....+..+..++++++|+..........+........+++.+... .+..++..++..+-|++.......
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--- 347 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 347 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 3445677888999999999876653333332222234445444211 145677888888888876311100
Q ss_pred HHcCChHHHHHHHh---------cCchhHHHHHHHHHHHhcC
Q 013228 290 IDAGLIGPLVNLLQ---------NAEFDIKNWAARAISNATF 322 (447)
Q Consensus 290 ~~~~~~~~L~~~l~---------~~~~~v~~~a~~aL~~l~~ 322 (447)
.+......+.+++. ..+++....++-||+++..
T Consensus 348 ~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 348 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 01123445555555 2478888999999999985
No 173
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=40.25 E-value=48 Score=29.42 Aligned_cols=129 Identities=11% Similarity=0.056 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH-HhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-
Q 013228 183 MTDACRALFYLSEGTNDEIQAVIEAGVCPRLV-ELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI- 260 (447)
Q Consensus 183 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~-~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~- 260 (447)
+-.++..++-+..+.... +.+..++ ..+.+..+..+..+++++.|+..........+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 444666666555443321 1222222 2334456778889999999998766533333322111223333331
Q ss_pred -------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---------cCchhHHHHHHHHHHHhcC
Q 013228 261 -------HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ---------NAEFDIKNWAARAISNATF 322 (447)
Q Consensus 261 -------~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~---------~~~~~v~~~a~~aL~~l~~ 322 (447)
.. +..++..++..+-|++....... .+......+.+++. ..+++....++-||+++..
T Consensus 253 ~~~~~~~~~-nkNl~IA~ATL~lNlAv~~~~~~---~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 253 EFSQASAKQ-SQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CCSSCCHHH-HHHHHHHHHHHHHHHHHHHHHTC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCC-CchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 12 45678888888888876311100 00123445556555 3578888999999999985
No 174
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=34.30 E-value=40 Score=21.46 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q 013228 405 DEIHEKSVKILETYWCGRVAG 425 (447)
Q Consensus 405 ~~v~~~a~~~l~~~~~~~~~~ 425 (447)
+++++.+...+.+||+.+++|
T Consensus 50 ~~Ir~~~~e~~~~FFpe~~~~ 70 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKNDDE 70 (70)
T ss_dssp HHHHHHHHHHHHHHSCSCTTC
T ss_pred HHHHHHHHHHHHHhCccccCC
Confidence 578899999999999886654
No 175
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=26.68 E-value=1.5e+02 Score=25.64 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=32.9
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228 384 AQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420 (447)
Q Consensus 384 ~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (447)
.+.+.+.+.=..+..|..|++++|...|..++..+-.
T Consensus 38 ~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~ 74 (309)
T 1pqv_S 38 EKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD 74 (309)
T ss_pred HHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999988654
No 176
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=26.11 E-value=3.7e+02 Score=26.92 Aligned_cols=116 Identities=9% Similarity=0.037 Sum_probs=64.9
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc---cc---cchhHHHHHHH
Q 013228 74 DTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN---KH---AKLSMLRIATW 147 (447)
Q Consensus 74 ~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~---~~~~~~~~a~~ 147 (447)
.++.+++. +.+.+...+.+.+..+...+..+|.+||.-.|.+++.+ +|.+++.+. .+ ..+.-...++.
T Consensus 332 ~~~~fV~~-l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV-----lP~vL~r~y~sLe~~~l~e~Hrl~~aL~ 405 (799)
T 1vsy_4 332 CHEEIVEI-FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI-----YDKILIDLYDTLADQFINSRHRIISSLK 405 (799)
T ss_dssp HHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH-----HHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee-----hHHHHHHHHHHhccccccchhHHHHHHH
Confidence 33444432 34555556678899999999999999998777444454 444444332 12 22333334555
Q ss_pred HHHHhcCCCCC--CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228 148 TLSNFCAGKPK--PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE 195 (447)
Q Consensus 148 ~L~~l~~~~~~--~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~ 195 (447)
++..+++.-.. .-......++..++.-+..+|+.-...++..+..++.
T Consensus 406 ~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 406 QFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 55555432211 1112233444445555566777777777777766653
No 177
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=25.96 E-value=2.6e+02 Score=22.51 Aligned_cols=134 Identities=7% Similarity=-0.054 Sum_probs=75.6
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 013228 135 KHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRL 213 (447)
Q Consensus 135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L 213 (447)
.+.--+.+..++..+....... ....++.+-.++. -++..+....+.+++.+....+. ...+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~--------~~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT--------ELPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG--------GHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH--------HHHHHH
Confidence 3344455556666665543211 1223333344444 34555655544555555432222 134667
Q ss_pred HHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013228 214 VELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID 291 (447)
Q Consensus 214 ~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 291 (447)
...+.+++.-+++.|+..+..... ...... .++.+-..+.++ +.-|++...|+|..++..+++....++.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 788888888888877664422211 111121 133444466677 8999999999999999888876655554
No 178
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=24.86 E-value=2.7e+02 Score=22.38 Aligned_cols=142 Identities=11% Similarity=-0.034 Sum_probs=85.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228 42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLV 120 (447)
Q Consensus 42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~ 120 (447)
..+..+..++. -+.+..|+..+........+ ..++.+-.++.. ++..+....+.+++.+....+.
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~--------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSL--------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCH--------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCH--------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 44455666677 78888888888876532111 112223334433 5677777766667666533332
Q ss_pred HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHH
Q 013228 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE 200 (447)
Q Consensus 121 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~ 200 (447)
.+...+.....+++.-+++.+.-++.... ........++.+-.++.+++.-|+..+.|+|..++...++.
T Consensus 124 ----~~~~~i~~W~~s~~~w~rR~ai~~~l~~~------~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 124 ----ELPTIFALFYGAENFWNRRVALNLQLMLK------EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ----GHHHHHHHHTTCSSHHHHHHHHHTTTTCG------GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 12233333437777778887766442111 11122445666666888899999999999999999887776
Q ss_pred HHHHHHh
Q 013228 201 IQAVIEA 207 (447)
Q Consensus 201 ~~~~~~~ 207 (447)
...++..
T Consensus 194 v~~fl~~ 200 (220)
T 2b6c_A 194 VEELMKE 200 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 5555543
No 179
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=23.67 E-value=5.6e+02 Score=25.62 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=60.6
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc---CChhHHHHHHHHHHHhcc----CCcHHHHHHHHh
Q 013228 135 KHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS---NDKEVMTDACRALFYLSE----GTNDEIQAVIEA 207 (447)
Q Consensus 135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~---~~~~v~~~al~~l~~l~~----~~~~~~~~~~~~ 207 (447)
.+.+..+...+..++.+|+.-.|.....+...++..+...|.. ..+.-...++.++..++. ....+ ..+.
T Consensus 349 fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr-~hl~-- 425 (799)
T 1vsy_4 349 QNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYR-VHIT-- 425 (799)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGG-GHHH--
T ss_pred CcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccH-HHHH--
Confidence 6778888888999999999876655566677788877778776 345455556666665541 11111 1111
Q ss_pred CcHHHHHHhcCCCCchhHhHHHHHHHHhh
Q 013228 208 GVCPRLVELLGHPSPSVLTRALQTVVNIA 236 (447)
Q Consensus 208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~ 236 (447)
.++..++.-+..+++.--..++..+..++
T Consensus 426 ~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 426 NVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 23444444455556555555666666654
No 180
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.44 E-value=1.8e+02 Score=23.08 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchh--HHHHHHHHHHHh
Q 013228 81 HGAVPIFVKLLAS------PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLS--MLRIATWTLSNF 152 (447)
Q Consensus 81 ~~~i~~L~~ll~~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~--~~~~a~~~L~~l 152 (447)
...+|.++.++.+ .+.......+.....|..++. ..-...-...+|+++..+-...-.. +++.|+..+..+
T Consensus 39 ~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q ss_pred cCCCCCCChhhHhhhHHHHHHhhccC--ChhHHHHHHHHHHHh
Q 013228 153 CAGKPKPIFDQVRPALPALAQLVHSN--DKEVMTDACRALFYL 193 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~al~~l~~l 193 (447)
+.............+...+.+.+.++ ......-|+..|..+
T Consensus 118 ~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 118 YDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
No 181
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=22.78 E-value=7.2e+02 Score=26.58 Aligned_cols=101 Identities=11% Similarity=0.024 Sum_probs=59.4
Q ss_pred HhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 013228 257 GLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREG 336 (447)
Q Consensus 257 ~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 336 (447)
.++.+. ++.++..+...-..+...... ..+..++..|+..+.++...-...|+.+|..++.. .+........
T Consensus 407 ~Ll~S~-~~~v~~Fg~~lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~-~~~~l~~~a~-- 478 (1323)
T 3s4w_B 407 TLFHSQ-DQRIILFGSLLYKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL-NASAMRLNAA-- 478 (1323)
T ss_dssp HHHTSS-SHHHHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-CHHHHHHTHH--
T ss_pred HHHhCC-CHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc-CHHHHhHHHH--
Confidence 345666 888888887776666553322 22233566677766666555556688888888864 3443333222
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228 337 CIKPLCDLLLCADPEIVTVFLKGLEKILK 365 (447)
Q Consensus 337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~ 365 (447)
.+..+.+.+++-+..=.......|..+.-
T Consensus 479 ~l~giLD~l~~l~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 479 FVKGILDYLENMSPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp HHHGGGGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Confidence 34455556666554333455777777764
No 182
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.67 E-value=96 Score=23.47 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=50.3
Q ss_pred ChHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH-HHHhhccCC---CHHHHHHHHHHHHHHHHh
Q 013228 294 LIGPLVNLLQN-AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIK-PLCDLLLCA---DPEIVTVFLKGLEKILKV 366 (447)
Q Consensus 294 ~~~~L~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~-~L~~ll~~~---~~~~~~~a~~~l~~l~~~ 366 (447)
.+..|..-+.. .++.++..|+..|-.+..++.......+....++. .|+.++... +..++..++..+..-...
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 45556666664 57778888998888888888777666666555665 366666542 346888888887777653
No 183
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.98 E-value=2.5e+02 Score=20.89 Aligned_cols=71 Identities=6% Similarity=-0.085 Sum_probs=48.8
Q ss_pred ChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228 251 ALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322 (447)
Q Consensus 251 ~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~ 322 (447)
++..+.+.+... .+.-+-.+++.+-.++..........+..++.+.+.......++..|......+...-.
T Consensus 44 Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 44 FVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 344566666666 77888888888888876322223456667777777777777788888888877776654
Done!