Query 013229
Match_columns 447
No_of_seqs 215 out of 1066
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 7.6E-95 2.6E-99 725.6 33.1 305 4-423 2-309 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 1.1E-89 3.6E-94 689.5 29.7 294 5-418 3-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 3.6E-86 1.2E-90 673.2 32.8 312 2-430 17-330 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 4.6E-83 1.6E-87 652.4 29.4 305 3-432 19-337 (357)
5 2imq_X Salivary nitrophorin; f 100.0 3.4E-67 1.2E-71 518.1 21.9 272 6-417 3-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 99.4 2.4E-12 8.1E-17 119.3 15.1 66 224-305 97-162 (256)
7 4fva_A 5'-tyrosyl-DNA phosphod 99.4 3E-12 1E-16 118.9 11.5 68 226-306 103-170 (256)
8 3teb_A Endonuclease/exonucleas 99.4 1.8E-11 6.2E-16 115.1 16.5 62 226-306 120-181 (266)
9 4f1h_A Tyrosyl-DNA phosphodies 99.3 1.6E-11 5.4E-16 111.7 13.7 63 227-305 94-156 (250)
10 4gew_A 5'-tyrosyl-DNA phosphod 99.2 1.2E-10 4E-15 118.2 14.7 67 227-306 210-276 (362)
11 3l1w_A Uncharacterized protein 99.1 1.8E-09 6.2E-14 101.6 15.4 62 226-305 107-170 (257)
12 3g6s_A Putative endonuclease/e 99.1 6E-09 2E-13 98.8 17.6 60 227-304 114-175 (267)
13 1ako_A Exonuclease III; AP-end 99.0 3.5E-10 1.2E-14 106.4 8.7 68 227-307 87-157 (268)
14 3mpr_A Putative endonuclease/e 99.0 2.6E-09 8.9E-14 103.9 12.7 63 227-305 118-182 (298)
15 1vyb_A ORF2 contains A reverse 98.5 9.1E-07 3.1E-11 81.2 12.9 54 231-306 97-150 (238)
16 2jc4_A Exodeoxyribonuclease II 98.5 7.2E-08 2.5E-12 89.9 4.6 53 242-307 98-152 (256)
17 1zwx_A SMCL, sphingomyelinase- 98.4 4.8E-07 1.6E-11 87.0 8.8 70 226-307 128-201 (301)
18 2o3h_A DNA-(apurinic or apyrim 98.4 7.1E-07 2.4E-11 85.2 9.1 37 11-50 28-64 (285)
19 2jc5_A Exodeoxyribonuclease; h 98.4 2.1E-07 7.2E-12 86.8 5.1 38 379-416 218-257 (259)
20 3i41_A Beta-hemolysin; beta to 98.4 8.7E-07 3E-11 87.3 9.8 70 226-307 147-220 (317)
21 3g91_A MTH0212, exodeoxyribonu 98.3 4.2E-07 1.4E-11 86.2 4.5 36 12-50 4-39 (265)
22 1hd7_A DNA-(apurinic or apyrim 98.3 6.5E-07 2.2E-11 87.9 6.1 37 11-50 61-97 (318)
23 2ddr_A Sphingomyelin phosphodi 98.3 3.6E-06 1.2E-10 80.9 10.3 69 226-306 128-200 (306)
24 2voa_A AF_EXO, XTHA, exodeoxyr 98.1 1.4E-05 4.8E-10 74.5 10.7 35 12-50 2-36 (257)
25 2a40_B Deoxyribonuclease-1; WA 97.9 2.3E-05 8E-10 74.3 7.7 61 229-307 111-174 (260)
26 2ei9_A Non-LTR retrotransposon 97.8 4.3E-05 1.5E-09 72.7 8.6 35 12-50 8-42 (240)
27 1wdu_A TRAS1 ORF2P; four-layer 97.4 0.00071 2.4E-08 63.1 10.2 59 227-306 101-159 (245)
28 1sr4_B CDT B, cytolethal diste 97.0 0.0018 6.2E-08 63.1 9.2 38 14-53 7-48 (261)
29 2j63_A AP-endonuclease; base e 96.8 0.0041 1.4E-07 65.2 10.1 35 381-415 430-466 (467)
30 4b8c_D Glucose-repressible alc 96.5 0.00094 3.2E-08 73.3 2.6 75 239-320 545-619 (727)
31 2f1n_A CDT B, cytolethal diste 95.3 0.021 7.1E-07 55.6 5.7 61 227-305 129-189 (262)
32 3ngq_A CCR4-NOT transcription 95.0 0.068 2.3E-06 54.8 9.1 77 240-322 194-271 (398)
33 2j63_A AP-endonuclease; base e 63.5 0.59 2E-05 48.8 -3.0 37 11-50 149-188 (467)
34 2ddr_A Sphingomyelin phosphodi 59.9 7.2 0.00025 36.4 4.1 15 401-415 291-305 (306)
35 1sr4_B CDT B, cytolethal diste 44.7 9.1 0.00031 36.9 2.1 60 227-303 120-179 (261)
36 3pt1_A UPF0364 protein YMR027W 39.8 5.9 0.0002 41.5 -0.1 17 290-306 374-390 (471)
37 2yka_B ORF57 protein, 52 kDa i 39.6 8.9 0.00031 23.7 0.0 10 376-385 7-16 (26)
38 2fvt_A Conserved hypothetical 26.8 40 0.0014 29.1 3.0 33 15-47 43-75 (135)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=7.6e-95 Score=725.59 Aligned_cols=305 Identities=39% Similarity=0.695 Sum_probs=281.0
Q ss_pred CceeeeEEEEEEEeeCCCCCCCCCCCCccccCC-CCCCCEEEEeeEEEEecCCCceeeccCCchhhHHHHHHHHHhCCCC
Q 013229 4 GCNVQSFRVFVATWNVGGKTPHSGLNLDDFLQV-DGQSDIYILGFQEIVPLNAGNVLVIEDNEPAGRWLTLINKSLNKSH 82 (447)
Q Consensus 4 ~~~~~~~~V~vgTWNV~g~~P~~~~dL~~wL~~-~~~~DIyviGfQEiV~Lna~nvl~~~d~~~~~~W~~~i~~~Ln~~~ 82 (447)
||..++++||||||||||+.|+++ |.+||.. ..+||||||||||+ +|++.+++. .++.....|++.|.++|+.
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~~--l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~-~~~~~~~~W~~~i~~~L~~-- 75 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKEC--LRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFF-HDTPKEEEWFKAVSEGLHP-- 75 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCSC--THHHHSSSCCCCSEEEEEEECS-CCSHHHHTT-CCCHHHHHHHHHHHHHSCT--
T ss_pred CceeeccEEEEEEEEcCCccCchh--HHHHhcccCCCCCeEEEEEEec-ccchhhhcc-cCcchHHHHHHHHHHhcCC--
Confidence 899999999999999999998654 8999986 46899999999999 899988765 3566788999999999873
Q ss_pred CCccccccCCCCCCCccccccchhhhhccchhhhhhhhhcccCCCchhhHhhhhccccccCCCCCCCCcccCCCCCCCCC
Q 013229 83 SVSSRRIRSAPSFSNSLFFQKPSLKKISKNFRTESKRRLKMCNCTPELELERKYNKEFCFPCQQSNNVTVSEDDFSSEED 162 (447)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (447)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCCCCCCCCCceEEEEeeehhceeeeEEEeccccccccceEEeeEeecccccccceeEEEEEEEEcCeE
Q 013229 163 EDGPSNLEMTGISTPSSTTQMKFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHRTS 242 (447)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~t~ 242 (447)
+.+|++|++.+|+||+|+||||+++.++|++|++++|+||++|++||||||+|||.+++++
T Consensus 76 -------------------~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts 136 (313)
T 3mtc_A 76 -------------------DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTS 136 (313)
T ss_dssp -------------------TSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEE
T ss_pred -------------------CCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcE
Confidence 1359999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccc-cCHHHHHHHHhhCC
Q 013229 243 FCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIA-LSYLDTRKLLEQND 321 (447)
Q Consensus 243 ~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~-l~~~~v~~li~~~~ 321 (447)
|||||||||||+++ .++||+||.+|++++.|+.... ...+..|.+||+|||+|||||||+ ++.++++++|++++
T Consensus 137 ~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f~~~~~---~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~ 211 (313)
T 3mtc_A 137 ICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDP---SLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKD 211 (313)
T ss_dssp EEEEEEECCCSGGG--HHHHHHHHHHHHHHCCBCCSCS---SSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTC
T ss_pred EEEEeeccCCCchH--HHHHHHHHHHHHHhcccCCCCC---ccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCC
Confidence 99999999999865 7899999999999999975321 123467889999999999999996 89999999999999
Q ss_pred hhHhhccccchHHHHcccccCCccccccccCCccccccCCCCCCCcccccCCcccCcccccceeeecCCeeeeeecc-CC
Q 013229 322 WDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILWHGTGIQQLSYIR-GE 400 (447)
Q Consensus 322 ~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWcDRIL~~~~~i~~l~Y~~-~e 400 (447)
|+.||++|||+++|++|.+|.||.|++|+|||||||+.|++.|| +++|+|+|||||||||++..++++.|.+ ++
T Consensus 212 ~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~yd-----ts~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~ 286 (313)
T 3mtc_A 212 FQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWD-----TSEKCRAPAWCDRILWKGKNITQLSYQSHMA 286 (313)
T ss_dssp HHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBC-----CSTTCCCCBCCEEEEEEESSEEEEEEEECTT
T ss_pred HHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccc-----cccCEecccccceEEEecCCeEEEeeeeccC
Confidence 99999999999999999999999999999999999999999999 8999999999999999999999999997 57
Q ss_pred CCcCCCcCccceEEEEEeecchh
Q 013229 401 SRFSDHRPVCAMFSVDVEVNEGS 423 (447)
Q Consensus 401 ~~~SDHkPV~a~F~v~v~~i~~~ 423 (447)
+++||||||+|.|.++++++.+.
T Consensus 287 ~~~SDHrPV~a~f~~~~~~~~~~ 309 (313)
T 3mtc_A 287 LKTSDHKPVSSVFDIGVRVVAHH 309 (313)
T ss_dssp CCSSSSCCEEEEEEEEEEEECCC
T ss_pred ccCCCccCeEEEEEEEEEEeecc
Confidence 99999999999999999988653
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=1.1e-89 Score=689.54 Aligned_cols=294 Identities=32% Similarity=0.574 Sum_probs=246.6
Q ss_pred ceeeeEEEEEEEeeCCCCCCCCCCCCccccCCC------------CCCCEEEEeeEEEEecCCCceeeccCCchhhHHHH
Q 013229 5 CNVQSFRVFVATWNVGGKTPHSGLNLDDFLQVD------------GQSDIYILGFQEIVPLNAGNVLVIEDNEPAGRWLT 72 (447)
Q Consensus 5 ~~~~~~~V~vgTWNV~g~~P~~~~dL~~wL~~~------------~~~DIyviGfQEiV~Lna~nvl~~~d~~~~~~W~~ 72 (447)
.+...++||||||||||+.||++ |.+||.+. .|||||||||||+. .....|++
T Consensus 3 ~~~~~i~i~vgTwNv~g~~p~~~--L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~-------------~~~~~W~~ 67 (316)
T 4a9c_A 3 DEPDMISVFIGTWNMGSVPPPKN--VTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENS-------------VGDREWLD 67 (316)
T ss_dssp ---CEEEEEEEEEECTTSCCCSC--CHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCC-------------SCHHHHHH
T ss_pred CCCCeEEEEEEEeEcCCcCCCcc--hhHhhcccccccCcccccccCCCcEEEEeccccc-------------cchhHHHH
Confidence 36788999999999999999865 89999752 36999999999972 13579999
Q ss_pred HHHHHhCCCCCCccccccCCCCCCCccccccchhhhhccchhhhhhhhhcccCCCchhhHhhhhccccccCCCCCCCCcc
Q 013229 73 LINKSLNKSHSVSSRRIRSAPSFSNSLFFQKPSLKKISKNFRTESKRRLKMCNCTPELELERKYNKEFCFPCQQSNNVTV 152 (447)
Q Consensus 73 ~i~~~Ln~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (447)
.|.++|+...
T Consensus 68 ~i~~~L~~~~---------------------------------------------------------------------- 77 (316)
T 4a9c_A 68 LLRGGLKELT---------------------------------------------------------------------- 77 (316)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHhcccc----------------------------------------------------------------------
Confidence 9999998410
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEeeehhceeeeEEEeccccccccceEEeeEeecccccccceeEE
Q 013229 153 SEDDFSSEEDEDGPSNLEMTGISTPSSTTQMKFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCI 232 (447)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV 232 (447)
..+|.+|++++|+||+|+||||+++.++|++|++++|+||++|++||||||
T Consensus 78 -----------------------------~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV 128 (316)
T 4a9c_A 78 -----------------------------DLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAV 128 (316)
T ss_dssp -----------------------------SCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEE
T ss_pred -----------------------------CCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceE
Confidence 135999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccccCHHH
Q 013229 233 SVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSYLD 312 (447)
Q Consensus 233 ~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~~~ 312 (447)
+|||.+++++|||||||||||+++ +++||+||.+|++++.|+.... ...+.+.++|||||+|||||||+++.++
T Consensus 129 ~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn~d~~~I~~~l~f~~~~~----~~~d~~~~~d~vfw~GDLNyRi~~~~~~ 202 (316)
T 4a9c_A 129 GVSFMFNGTSFGFVNCHLTSGNEK--TARRNQNYLDILRLLSLGDRQL----NAFDISLRFTHLFWFGDLNYRLDMDIQE 202 (316)
T ss_dssp EEEEEETTEEEEEEEEECCCSTTC--HHHHHHHHHHHHHHCCC-----------CCTTTTSSEEEEEEECCCCBSSCHHH
T ss_pred EEEEEECCcEEEEEEeccccCchH--HHHHHHHHHHHHHhCCCCCCCc----CccccCCcCCeEEEcCCccCCcCCCHHH
Confidence 999999999999999999999875 7899999999999999974211 1123345789999999999999999999
Q ss_pred HHHHHhhCChhHhhccccchHHHHcccccCCccccccccCCccccccCCC-CCCCccc-ccCCcccCcccccceeeecC-
Q 013229 313 TRKLLEQNDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSD-TYAGDCI-KTKNKRRTPAWCDRILWHGT- 389 (447)
Q Consensus 313 v~~li~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~-~Yd~~~~-~ts~k~R~PSWcDRIL~~~~- 389 (447)
++++|++++|+.||++|||+++|++|++|.||.|++|+|||||||+.|++ .|+.+.. .+++|+|+|||||||||++.
T Consensus 203 v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~ 282 (316)
T 4a9c_A 203 ILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYP 282 (316)
T ss_dssp HHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECT
T ss_pred HHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCC
Confidence 99999999999999999999999999999999999999999999999995 5764332 25678899999999999975
Q ss_pred --Ceeeeeecc-CCCCcCCCcCccceEEEEEe
Q 013229 390 --GIQQLSYIR-GESRFSDHRPVCAMFSVDVE 418 (447)
Q Consensus 390 --~i~~l~Y~~-~e~~~SDHkPV~a~F~v~v~ 418 (447)
.+.+++|.+ +++++||||||+|.|.|+|.
T Consensus 283 ~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 283 ETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp TCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 588999986 68999999999999999885
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=3.6e-86 Score=673.16 Aligned_cols=312 Identities=31% Similarity=0.568 Sum_probs=280.0
Q ss_pred CCCceeeeEEEEEEEeeCCCCCCCCCCCCccccCC--CCCCCEEEEeeEEEEecCCCceeeccCCchhhHHHHHHHHHhC
Q 013229 2 TSGCNVQSFRVFVATWNVGGKTPHSGLNLDDFLQV--DGQSDIYILGFQEIVPLNAGNVLVIEDNEPAGRWLTLINKSLN 79 (447)
Q Consensus 2 ~~~~~~~~~~V~vgTWNV~g~~P~~~~dL~~wL~~--~~~~DIyviGfQEiV~Lna~nvl~~~d~~~~~~W~~~i~~~Ln 79 (447)
.+||..++++|+||||||||+.|+ .||.+||.. ..+||||||||||||+|+++++++. |+.....|++.|.++|+
T Consensus 17 ~e~~~~~~~~i~v~TwNv~g~~~~--~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~~~w~~~i~~~L~ 93 (347)
T 1i9z_A 17 NEFSEHKNVKIFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKRREWESCVKRLLN 93 (347)
T ss_dssp GGTEEEEEEEEEEEEEECTTCCCC--SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCcEEEEEeEecCCCCCc--hhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhHHHHHHHHHHHHh
Confidence 479999999999999999999984 459999986 3689999999999999999999874 67778899999999998
Q ss_pred CCCCCccccccCCCCCCCccccccchhhhhccchhhhhhhhhcccCCCchhhHhhhhccccccCCCCCCCCcccCCCCCC
Q 013229 80 KSHSVSSRRIRSAPSFSNSLFFQKPSLKKISKNFRTESKRRLKMCNCTPELELERKYNKEFCFPCQQSNNVTVSEDDFSS 159 (447)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (447)
...
T Consensus 94 ~~~----------------------------------------------------------------------------- 96 (347)
T 1i9z_A 94 GKC----------------------------------------------------------------------------- 96 (347)
T ss_dssp HTC-----------------------------------------------------------------------------
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 521
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCceEEEEeeehhceeeeEEEeccccccccceEEeeEeecccccccceeEEEEEEEEc
Q 013229 160 EEDEDGPSNLEMTGISTPSSTTQMKFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFH 239 (447)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~ 239 (447)
.++..|.+|.+.+|+|++|+||+|.++.++|++|++++++||++|.+||||||++||.++
T Consensus 97 --------------------~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~ 156 (347)
T 1i9z_A 97 --------------------TSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYE 156 (347)
T ss_dssp --------------------CSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEET
T ss_pred --------------------cCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEEC
Confidence 012469999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccccCHHHHHHHHhh
Q 013229 240 RTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSYLDTRKLLEQ 319 (447)
Q Consensus 240 ~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~~~v~~li~~ 319 (447)
+++||||||||+||+.+ .++||+||.+|++++.|... ..|.+||++||||||||||+++.++++++|++
T Consensus 157 ~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~~---------~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~ 225 (347)
T 1i9z_A 157 DTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRRG---------RSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQ 225 (347)
T ss_dssp TEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGGG---------CCTTSSSEEEEEEECCCCBSSCHHHHHHHHHT
T ss_pred CeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCcc---------cccccCccEEEecccccccCCCHHHHHHHHhh
Confidence 99999999999999865 66899999999999998642 34678999999999999999999999999999
Q ss_pred CChhHhhccccchHHHHcccccCCccccccccCCccccccCCCCCCCcccccCCcccCcccccceeeecCCeeeeeeccC
Q 013229 320 NDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILWHGTGIQQLSYIRG 399 (447)
Q Consensus 320 ~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWcDRIL~~~~~i~~l~Y~~~ 399 (447)
++|..||++|||+.++++|.+|.||.|++|+|+|||||+.+++.|| +++|+|+|||||||||++ .++++.|.+.
T Consensus 226 ~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd-----~s~k~R~PsWcDRIL~~~-~l~~~~Y~~~ 299 (347)
T 1i9z_A 226 GKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYD-----TSDKHRVPAWTDRILYRG-ELVPHSYQSV 299 (347)
T ss_dssp TCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBC-----CSTTCCCCBCCEEEEEES-SCEEEEEEEC
T ss_pred ccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCcccc-----ccccccCCcccceEEEeC-CEEEEEEEec
Confidence 9999999999999999999999999999999999999999999999 899999999999999998 8999999998
Q ss_pred CCCcCCCcCccceEEEEEeecchhhhhhhcC
Q 013229 400 ESRFSDHRPVCAMFSVDVEVNEGSSRRKLSG 430 (447)
Q Consensus 400 e~~~SDHkPV~a~F~v~v~~i~~~k~~~~~~ 430 (447)
++++||||||+|.|.+.++.+|++||+++..
T Consensus 300 ~~~~SDH~PV~a~f~~~v~~~~~~~~~~~~~ 330 (347)
T 1i9z_A 300 PLYYSDHRPIYATYEANIVKVDREKKKILFE 330 (347)
T ss_dssp CCCSSSBCCEEEEEEEEEEEECHHHHHHHHH
T ss_pred CccCCCcCCceeEEEEEEecCCHHHHHHHHH
Confidence 8999999999999999999999999998764
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.6e-83 Score=652.36 Aligned_cols=305 Identities=30% Similarity=0.533 Sum_probs=266.3
Q ss_pred CCceeeeEEEEEEEeeCCCCCC-CCCCCCccccCC---CCCCCEEEEeeEEEEecCCCceeeccCCchhhHHHHHHHHHh
Q 013229 3 SGCNVQSFRVFVATWNVGGKTP-HSGLNLDDFLQV---DGQSDIYILGFQEIVPLNAGNVLVIEDNEPAGRWLTLINKSL 78 (447)
Q Consensus 3 ~~~~~~~~~V~vgTWNV~g~~P-~~~~dL~~wL~~---~~~~DIyviGfQEiV~Lna~nvl~~~d~~~~~~W~~~i~~~L 78 (447)
+|+..++++|+||||||||..+ |. +|++||.. +.+||||||||||+++ ....|+..|.++|
T Consensus 19 ~~~~~~~l~i~v~TwNv~g~~~~~~--~L~~~l~~~~~~~~pDI~viGlQEi~~-------------~~~~W~~~l~~~L 83 (357)
T 2xsw_A 19 RYFPDRNVALFVATWNMQGQKELPP--SLDEFLLPAEADYAQDLYVIGVQEGCS-------------DRREWETRLQETL 83 (357)
T ss_dssp HHCTTCEEEEEEEEEECTTCSSCCS--CCHHHHSCTTCCSCCSEEEEEEESCCS-------------CHHHHHHHHHHHH
T ss_pred hcCCCCCceEEEEEEecCCCCCCcc--cHHHHhccccccCCCCEEEEEeeeccc-------------hHHHHHHHHHHHh
Confidence 5788899999999999998653 44 58899864 3579999999999953 1478999998887
Q ss_pred CCCCCCccccccCCCCCCCccccccchhhhhccchhhhhhhhhcccCCCchhhHhhhhccccccCCCCCCCCcccCCCCC
Q 013229 79 NKSHSVSSRRIRSAPSFSNSLFFQKPSLKKISKNFRTESKRRLKMCNCTPELELERKYNKEFCFPCQQSNNVTVSEDDFS 158 (447)
Q Consensus 79 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (447)
+.
T Consensus 84 ~~------------------------------------------------------------------------------ 85 (357)
T 2xsw_A 84 GP------------------------------------------------------------------------------ 85 (357)
T ss_dssp CT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 52
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCceEEEEeeehhceeeeEEEeccccccccceEEeeEeecccccccceeEEEEEEEE
Q 013229 159 SEEDEDGPSNLEMTGISTPSSTTQMKFSLVASKQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSF 238 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~s~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i 238 (447)
.|+++.+.+|+|++|+||+|.++.++|++|++++|+||++|++||||||+|||.+
T Consensus 86 -------------------------~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~ 140 (357)
T 2xsw_A 86 -------------------------HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTF 140 (357)
T ss_dssp -------------------------TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -------------------------cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEE
Confidence 3999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCC--C-CCCCccccCccceEEEcccccccccCHHHHHH
Q 013229 239 HRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTP--G-SSVPEKILDHDRVIWLGDLNYRIALSYLDTRK 315 (447)
Q Consensus 239 ~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~--~-~~~~~~i~~~d~vfw~GDLNyRi~l~~~~v~~ 315 (447)
++++||||||||+||+++ .++||+||.+|++.+.|++..... . ....+.+.++|+|||+|||||||+++++++++
T Consensus 141 ~~t~~~Fvn~HLaa~~~~--~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~ 218 (357)
T 2xsw_A 141 FGTSFLFITSHFTSGDGK--VAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDA 218 (357)
T ss_dssp TTEEEEEEEEECCCSTTC--HHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHH
T ss_pred CCeEEEEEEEccCCCCch--HHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHH
Confidence 999999999999999865 789999999999999997542110 0 01123456799999999999999999999999
Q ss_pred HHh---hCChhHhhccccchHHHHcccccCCccccccccCCccccccCCCCCCCcccccCCcccCcccccceeeecC---
Q 013229 316 LLE---QNDWDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILWHGT--- 389 (447)
Q Consensus 316 li~---~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWcDRIL~~~~--- 389 (447)
+|+ .++|+.|+++|||+.++++|.+|.||.|++|+|||||||+.|++.|| +++|+|+|||||||||++.
T Consensus 219 ~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Yd-----ts~k~R~PaWcDRIL~~~~~~~ 293 (357)
T 2xsw_A 219 LLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYD-----STSKQRTPSYTDRVLYRSRHKG 293 (357)
T ss_dssp HHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBC-----CSTTCCCCBCCEEEEEEESSTT
T ss_pred HHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCCcccc-----ccCCCCCCcccceEEEecCCCC
Confidence 986 57999999999999999999999999999999999999999999999 8999999999999999964
Q ss_pred Ceeeeeecc-CCCCcCCCcCccceEEEEEeecchhhhhhhcCCC
Q 013229 390 GIQQLSYIR-GESRFSDHRPVCAMFSVDVEVNEGSSRRKLSGSN 432 (447)
Q Consensus 390 ~i~~l~Y~~-~e~~~SDHkPV~a~F~v~v~~i~~~k~~~~~~~~ 432 (447)
.++++.|.+ .++++||||||+|.|.+.++...+.......+++
T Consensus 294 ~i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~~~~~ipl~~~~f~ 337 (357)
T 2xsw_A 294 DICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRDNIPLAAGKFD 337 (357)
T ss_dssp SEEEEEEEECTTCCSSSSCCEEEEEEEECCCCCSCSCBCSSCCC
T ss_pred ceEEEEeEecccccCCCcCCceeEEEEEEecCCccccccccccC
Confidence 689999998 5899999999999999999887765443333443
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=3.4e-67 Score=518.10 Aligned_cols=272 Identities=24% Similarity=0.414 Sum_probs=236.7
Q ss_pred eeeeEEEEEEEeeCCCCCCCCCCCCccccCC--CCCCCEEEEeeEEEEecCCCceeeccCCchhhHHHHHHHHHhCCCCC
Q 013229 6 NVQSFRVFVATWNVGGKTPHSGLNLDDFLQV--DGQSDIYILGFQEIVPLNAGNVLVIEDNEPAGRWLTLINKSLNKSHS 83 (447)
Q Consensus 6 ~~~~~~V~vgTWNV~g~~P~~~~dL~~wL~~--~~~~DIyviGfQEiV~Lna~nvl~~~d~~~~~~W~~~i~~~Ln~~~~ 83 (447)
..++++|+|+||||++..|+++ |.+|+.. ..+||||||||||++ +++.+. .....|.+.|.++|+.
T Consensus 3 ~~~~~~i~V~T~Nv~~~~~~~~--l~~wl~~~~~~~pDI~viglQEv~-~~~~~~------~~~~~w~~~l~~~L~~--- 70 (282)
T 2imq_X 3 PPAQLSVHTVSWNSGHERAPTN--LEELLGLNSGETPDVIAVAVQGFG-FQTDKP------QQGPACVKNFQSLLTS--- 70 (282)
T ss_dssp CCSEEEEEEEEEEEETCCCCSC--CHHHHTCTTSCCCSEEEEEEEESC-TTTCTT------CCHHHHHHHHHHHHHH---
T ss_pred CCCCcEEEEEEEeCCCCcCchh--HHHHhcccccCCCCEEEEEeeeec-cccccc------hhhHHHHHHHHHhcCC---
Confidence 3468999999999998888654 7899973 468999999999996 554431 2367899998888752
Q ss_pred CccccccCCCCCCCccccccchhhhhccchhhhhhhhhcccCCCchhhHhhhhccccccCCCCCCCCcccCCCCCCCCCC
Q 013229 84 VSSRRIRSAPSFSNSLFFQKPSLKKISKNFRTESKRRLKMCNCTPELELERKYNKEFCFPCQQSNNVTVSEDDFSSEEDE 163 (447)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (447)
T Consensus 71 -------------------------------------------------------------------------------- 70 (282)
T 2imq_X 71 -------------------------------------------------------------------------------- 70 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCCCCCCCCCCceEEEEe--eehhceeeeEEEeccccccccceEEeeEeecccccccceeEEEEEEEEcCe
Q 013229 164 DGPSNLEMTGISTPSSTTQMKFSLVAS--KQMVGIFVTVWMRKELVQHVGHLRITSISRGIMGYLGNKGCISVSMSFHRT 241 (447)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~Y~~v~s--~~lvGi~L~Vfvr~~~~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~t 241 (447)
..|.+|.+ .+|+|++++||+|.++.+.|+++.+ +|++|.+||||||++||.++++
T Consensus 71 -------------------~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~ 127 (282)
T 2imq_X 71 -------------------KGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNK 127 (282)
T ss_dssp -------------------TTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTE
T ss_pred -------------------CceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCE
Confidence 13999998 8999999999999999888887765 5677889999999999999999
Q ss_pred EEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccccCHHHHHHHHhhCC
Q 013229 242 SFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSYLDTRKLLEQND 321 (447)
Q Consensus 242 ~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~~~v~~li~~~~ 321 (447)
+||||||||+|++++ .++|++|+..|++++.+ +.++|++||+||||||++.+.++++++|++++
T Consensus 128 ~~~fvn~HL~~~~~~--~~~R~~~~~~I~~~~~~--------------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~ 191 (282)
T 2imq_X 128 RFSFTTSRMSDEDVT--STNTKYAYDTRLDYSKK--------------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNN 191 (282)
T ss_dssp EEEEEEEECCTTCCC--TTSSSSSCCGGGCTTSS--------------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCch--HHHHHHHHHHHHHhhhc--------------cCccceEEEecccccccCCCHHHHHHHHhhcc
Confidence 999999999999654 45789999888876432 24578999999999999999999999999999
Q ss_pred hhHhhccccchHHHHcccccCCccccccccCCccccccCCCCCCCcccccCCcccCcccccceeeecC---Ceeeeeecc
Q 013229 322 WDALFDKDQLKIEKDAGRVFKGWQEGKIYFAPTYKYSYNSDTYAGDCIKTKNKRRTPAWCDRILWHGT---GIQQLSYIR 398 (447)
Q Consensus 322 ~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~gt~~Yd~~~~~ts~k~R~PSWcDRIL~~~~---~i~~l~Y~~ 398 (447)
|..|+++|||..+++ +.+|.+|.|++|+|+|||||+.++++|| ++|+|||||||||++. .++++.|.+
T Consensus 192 ~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~--------~~R~Psw~DrIl~~~~~~~~~~~~~y~~ 262 (282)
T 2imq_X 192 IDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNTDEYD--------LSATPSWTDRALYKSGTGKTIQPLSYNS 262 (282)
T ss_dssp HHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTSSCBC--------TTSCCBCCEEEEEECSSSCCEEEEEEEE
T ss_pred HHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCCcccc--------ccCCccccceEEEecCCCCceEeeEecC
Confidence 999999999999999 9999999999999999999999999997 4699999999999963 689999998
Q ss_pred C-CCCcCCCcCccceEEEEE
Q 013229 399 G-ESRFSDHRPVCAMFSVDV 417 (447)
Q Consensus 399 ~-e~~~SDHkPV~a~F~v~v 417 (447)
. ++.+|||+||+|.|.+++
T Consensus 263 ~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 263 LTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp CTTCCSSSSCCEEEEEEEEC
T ss_pred CCCCCCCCcCCeEEEEEEEC
Confidence 6 789999999999999864
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.42 E-value=2.4e-12 Score=119.28 Aligned_cols=66 Identities=27% Similarity=0.378 Sum_probs=47.9
Q ss_pred ccccceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccc
Q 013229 224 GYLGNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLN 303 (447)
Q Consensus 224 G~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 303 (447)
+....++.+.+.+.+.+..+.++|+||.++... ...|..+...+++.+.= ......+|++||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~--------------~~~~~pvIl~GDfN 160 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQE--------------APDSTTVIFAGDTN 160 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH--------------SCTTSEEEEEEECC
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhh--------------ccCcceEEEeCccC
Confidence 445678889999999999999999999987543 44566677777664320 01234689999999
Q ss_pred cc
Q 013229 304 YR 305 (447)
Q Consensus 304 yR 305 (447)
.+
T Consensus 161 ~~ 162 (256)
T 4gz1_A 161 LR 162 (256)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 7
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.36 E-value=3e-12 Score=118.88 Aligned_cols=68 Identities=16% Similarity=0.022 Sum_probs=45.0
Q ss_pred ccceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccc
Q 013229 226 LGNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYR 305 (447)
Q Consensus 226 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyR 305 (447)
.+..+.+.+.+.+.+..|.++|+||.+.... ...|..++..++..+... ........+|++||||.+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~-----------~~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREI-----------IAQNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHH-----------HHHSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhh-----------hhccCCCcEEEeccCCCC
Confidence 3567888899999999999999999987543 334555555554322100 001123579999999965
Q ss_pred c
Q 013229 306 I 306 (447)
Q Consensus 306 i 306 (447)
-
T Consensus 170 ~ 170 (256)
T 4fva_A 170 D 170 (256)
T ss_dssp G
T ss_pred c
Confidence 3
No 8
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.35 E-value=1.8e-11 Score=115.14 Aligned_cols=62 Identities=19% Similarity=0.345 Sum_probs=48.0
Q ss_pred ccceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccc
Q 013229 226 LGNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYR 305 (447)
Q Consensus 226 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyR 305 (447)
+..+|++.+++.+.+..|.++|+||.+.... ...|..+...|++.+. ....+|++||||-.
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~-----------------~~~~~il~GDfN~~ 180 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ-----------------NSNLKILMGDFNTD 180 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC-----------------SCCEEEEEEECCCC
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh-----------------cCCcEEEEeECCCC
Confidence 4579999999999999999999999987532 2346677777775432 14579999999986
Q ss_pred c
Q 013229 306 I 306 (447)
Q Consensus 306 i 306 (447)
-
T Consensus 181 ~ 181 (266)
T 3teb_A 181 A 181 (266)
T ss_dssp T
T ss_pred C
Confidence 5
No 9
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.32 E-value=1.6e-11 Score=111.70 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=45.3
Q ss_pred cceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccc
Q 013229 227 GNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYR 305 (447)
Q Consensus 227 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyR 305 (447)
...+.+.+.+.+.+..+.++|+||.+.... ...|..+...|++.+. . ......+|++||||-.
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~--~------------~~~~~pvIl~GDfN~~ 156 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIK--E------------APEDAIVIFAGDTNLR 156 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHH--H------------SCTTEEEEEEEECCCC
T ss_pred ccceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHH--h------------cCCCCCEEEEEecCCC
Confidence 346678888999999999999999987543 4556677777766432 0 0123469999999953
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.21 E-value=1.2e-10 Score=118.21 Aligned_cols=67 Identities=16% Similarity=0.044 Sum_probs=45.5
Q ss_pred cceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEccccccc
Q 013229 227 GNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRI 306 (447)
Q Consensus 227 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi 306 (447)
...+++.+.+.+.+..|.++|+||.+.... ..+|......++..+.-. ........+|++||||-+-
T Consensus 210 ~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~--~~~R~~Q~~~l~~~~~~~-----------~~~~~~~pvIl~GDFN~~p 276 (362)
T 4gew_A 210 MYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREI-----------IAQNPGALVFFGGDLNLRD 276 (362)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHH-----------HHHCTTCEEEEEEECCCCG
T ss_pred ccceEEEEEEEECCEEEEEEEecCCccccc--hhHHHHHHHHHHHHhHhh-----------hhcCCCCCeEEeecCCCCC
Confidence 356788899999999999999999987533 456766666665432100 0001235699999999653
No 11
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.08 E-value=1.8e-09 Score=101.62 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=44.7
Q ss_pred ccceeEEEEEEEEc--CeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccc
Q 013229 226 LGNKGCISVSMSFH--RTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLN 303 (447)
Q Consensus 226 ~GNKGaV~ir~~i~--~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 303 (447)
...++++.+++... +..+.++|+||.+.. ...|..+...+++.+. ..+. .+.+|++||||
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~-------------~~~~-~~pvil~GDfN 168 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELH-------------DKIA-QYPTLLMGDFN 168 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTH-------------HHHH-HSCEEEEEECC
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH-------------HHcC-CCCEEEEeeCC
Confidence 45788999999884 689999999998863 3467778777776542 0011 12699999999
Q ss_pred cc
Q 013229 304 YR 305 (447)
Q Consensus 304 yR 305 (447)
-.
T Consensus 169 ~~ 170 (257)
T 3l1w_A 169 AE 170 (257)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 12
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.05 E-value=6e-09 Score=98.81 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=42.2
Q ss_pred cceeEEEEEEEE--cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEccccc
Q 013229 227 GNKGCISVSMSF--HRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNY 304 (447)
Q Consensus 227 GNKGaV~ir~~i--~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNy 304 (447)
.+++++.+.|.. .+..|+++|+||.+.. ...|......+++.+. .+.....+|++||||-
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~--------------~~~~~~pvIl~GDfN~ 175 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIK--------------EIVGERPAVVTGDFNV 175 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHH--------------HHTTTSCEEEEEECSS
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH--------------HhcCCCCEEEEeECCC
Confidence 478899999984 6789999999998753 3456666666655431 0111346999999996
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.05 E-value=3.5e-10 Score=106.42 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=45.0
Q ss_pred cceeEEEEEEEEcCeEEEEEeecCCCCCCCc---cHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccc
Q 013229 227 GNKGCISVSMSFHRTSFCFVCSHLASGEKEG---DELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLN 303 (447)
Q Consensus 227 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~---~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 303 (447)
..++++.+++.+.+..|+++|+||.++.... ....|...+..+.+.+. ........+|++||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~-------------~~~~~~~~~Il~GDFN 153 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLE-------------TELKRDNPVLIMGDMN 153 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHH-------------HHCCTTSCEEEEEECC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHH-------------HhhhCCCCEEEEeECC
Confidence 4678999999999999999999999875321 12345555555544321 0001235699999999
Q ss_pred cccc
Q 013229 304 YRIA 307 (447)
Q Consensus 304 yRi~ 307 (447)
-..+
T Consensus 154 ~~~~ 157 (268)
T 1ako_A 154 ISPT 157 (268)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6543
No 14
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=2.6e-09 Score=103.91 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=42.6
Q ss_pred cceeEEEEEEE--EcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEccccc
Q 013229 227 GNKGCISVSMS--FHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNY 304 (447)
Q Consensus 227 GNKGaV~ir~~--i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNy 304 (447)
-+++++.+.|. ..+..|+++|+||.+.. ...|..+...|++.+. .. .. .....+|++||||-
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~--~~--------~~--~~~~pvIl~GDfN~ 181 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMK--EL--------GR--GKNLPAILTGDFNV 181 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHH--HT--------TT--TSCCCEEEEEECSS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHH--HH--------hc--CCCCcEEEEEeCCC
Confidence 46788888988 56889999999998542 3467677766655431 00 00 01346999999995
Q ss_pred c
Q 013229 305 R 305 (447)
Q Consensus 305 R 305 (447)
.
T Consensus 182 ~ 182 (298)
T 3mpr_A 182 D 182 (298)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.52 E-value=9.1e-07 Score=81.25 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=35.9
Q ss_pred EEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEccccccc
Q 013229 231 CISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRI 306 (447)
Q Consensus 231 aV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi 306 (447)
.+.+++.+.+..+.++|+|++++.. .+ -+.++++.+. . . ....++++||||-..
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~~---~~~~l~~~l~--~--------~-----~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----PR---FIKQVLSDLQ--R--------D-----LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----HH---HHHHHHHHTT--T--------T-----CCTTEEEEEECSSCS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----HH---HHHHHHHHHH--h--------c-----cCCCEEEEccCCCCC
Confidence 5667888889999999999988642 12 1334444432 0 0 125699999999743
No 16
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.49 E-value=7.2e-08 Score=89.86 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=30.0
Q ss_pred EEEEEeecCCCCCCCc--cHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccc
Q 013229 242 SFCFVCSHLASGEKEG--DELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIA 307 (447)
Q Consensus 242 ~~~FVn~HLaA~~~~~--~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 307 (447)
.+.++|+|+++..... ....|...+..+.+.+. ..+.....++++||||-..+
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~-------------~~~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVR-------------DEMTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHH-------------HHHTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHH-------------HHhcCCCCEEEEeECCCCCc
Confidence 6999999998875421 12234333444332211 00012356999999997554
No 17
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.43 E-value=4.8e-07 Score=86.96 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=48.9
Q ss_pred ccceeEEEEEEEEcCeEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcc
Q 013229 226 LGNKGCISVSMSFHRTSFCFVCSHLASGEKE----GDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGD 301 (447)
Q Consensus 226 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~----~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GD 301 (447)
..++|++.+++.+.+..|.++|+||.+.... .....|..+...|.+.+. .. .......+|++||
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~--~~----------~~~~~~pvIl~GD 195 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIA--KK----------NIPKDEIIFIGGD 195 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHH--HH----------TCCTTSEEEEEEE
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHH--Hh----------CCCCCCeEEEEee
Confidence 4589999999999999999999999987432 124457777766655321 00 0012357999999
Q ss_pred cccccc
Q 013229 302 LNYRIA 307 (447)
Q Consensus 302 LNyRi~ 307 (447)
||-.-+
T Consensus 196 fN~~~~ 201 (301)
T 1zwx_A 196 LNVNYG 201 (301)
T ss_dssp CCCCTT
T ss_pred CCCCCC
Confidence 997654
No 18
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.39 E-value=7.1e-07 Score=85.19 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=23.7
Q ss_pred EEEEEEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeEEE
Q 013229 11 RVFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 11 ~V~vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQEi 50 (447)
.+-|.||||.|........|.++|. ...||| |+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~-~~~~DI--i~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVK-EEAPDI--LCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHH-HHCCSE--EEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHH-hcCCCE--EEEEEe
Confidence 4678999999754321112555554 236885 789997
No 19
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.39 E-value=2.1e-07 Score=86.85 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=24.4
Q ss_pred ccccceeeecCCe-eeeeecc-CCCCcCCCcCccceEEEE
Q 013229 379 AWCDRILWHGTGI-QQLSYIR-GESRFSDHRPVCAMFSVD 416 (447)
Q Consensus 379 SWcDRIL~~~~~i-~~l~Y~~-~e~~~SDHkPV~a~F~v~ 416 (447)
.--|+||.+..-. ....+.- .+...|||.||.+.|.+.
T Consensus 218 ~rID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 218 WRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp ECCEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred eEEEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 4579999975311 1222222 246789999999988653
No 20
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.39 E-value=8.7e-07 Score=87.32 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=50.1
Q ss_pred ccceeEEEEEEEEcCeEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcc
Q 013229 226 LGNKGCISVSMSFHRTSFCFVCSHLASGEKE----GDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGD 301 (447)
Q Consensus 226 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~----~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GD 301 (447)
..+||.+.+++.+.+..|.++|+||.+.... .....|..+...|.+.+.=. .+.....+|++||
T Consensus 147 ~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~------------~~~~~~pvIl~GD 214 (317)
T 3i41_A 147 DSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK------------NIPKDETVYIGGD 214 (317)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH------------TCCTTSCEEEEEE
T ss_pred ccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh------------ccCCCCeEEEEeE
Confidence 5799999999999999999999999986521 12556777777776543200 0112356999999
Q ss_pred cccccc
Q 013229 302 LNYRIA 307 (447)
Q Consensus 302 LNyRi~ 307 (447)
||-.-.
T Consensus 215 fN~~~~ 220 (317)
T 3i41_A 215 LNVNKG 220 (317)
T ss_dssp CCCCTT
T ss_pred CCCCCC
Confidence 997653
No 21
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.28 E-value=4.2e-07 Score=86.20 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=23.5
Q ss_pred EEEEEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeEEE
Q 013229 12 VFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 12 V~vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQEi 50 (447)
+-|.||||+|...+....+.+||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 4578999998543222136667652 36886 678997
No 22
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.28 E-value=6.5e-07 Score=87.94 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=24.1
Q ss_pred EEEEEEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeEEE
Q 013229 11 RVFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 11 ~V~vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQEi 50 (447)
.+-|.||||.|........|.+||. ...||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~-~~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVK-EEAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHH-HHCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHH-hhCCCE--EEEEEc
Confidence 4678999999764221122555654 346887 789997
No 23
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.25 E-value=3.6e-06 Score=80.85 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=47.1
Q ss_pred ccceeEEEEEEEEcCeEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcc
Q 013229 226 LGNKGCISVSMSFHRTSFCFVCSHLASGEKE----GDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGD 301 (447)
Q Consensus 226 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~----~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GD 301 (447)
...+|++.+++.+.+..+.++|+||.+.... .....|..++..|.+.+.= . .+.....+|++||
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~--~----------~~~~~~pvil~GD 195 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKN--K----------NIPNNEYVLIGGD 195 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHH--H----------TCCTTSCEEEEEE
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHH--h----------cCCCCCEEEEEee
Confidence 3578999999999999999999999987421 1245677777766543210 0 0012346999999
Q ss_pred ccccc
Q 013229 302 LNYRI 306 (447)
Q Consensus 302 LNyRi 306 (447)
||-.-
T Consensus 196 fN~~~ 200 (306)
T 2ddr_A 196 MNVNK 200 (306)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99765
No 24
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.10 E-value=1.4e-05 Score=74.52 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=22.0
Q ss_pred EEEEEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeEEE
Q 013229 12 VFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 12 V~vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQEi 50 (447)
+-|.||||+|...... .+.++|. ...||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~~-~i~~~i~-~~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRLH-IVIPWLK-ENKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTHH-HHHHHHH-HHCCSE--EEEECC
T ss_pred eEEEEEecCChHHHHH-HHHHHHh-hcCCCE--EEEEEe
Confidence 4589999998643211 1344443 236886 689997
No 25
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=97.87 E-value=2.3e-05 Score=74.33 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=35.5
Q ss_pred eeEEEEEEEEc---CeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccc
Q 013229 229 KGCISVSMSFH---RTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYR 305 (447)
Q Consensus 229 KGaV~ir~~i~---~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyR 305 (447)
.+.+.+.|... +..|.++|+||.+... .++-+...+++..+. .......+|++||||-.
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~--------------~~~~~~~vil~GDfN~~ 172 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ--------------QKWHLNDVMLMGDFNAD 172 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH--------------HHHCCCCEEEEEECCCS
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH--------------HhCCCCCEEEEecCCCC
Confidence 55566777765 5799999999997532 111222333332210 00113469999999965
Q ss_pred cc
Q 013229 306 IA 307 (447)
Q Consensus 306 i~ 307 (447)
-.
T Consensus 173 ~~ 174 (260)
T 2a40_B 173 CS 174 (260)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 26
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=97.82 E-value=4.3e-05 Score=72.67 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=24.7
Q ss_pred EEEEEeeCCCCCCCCCCCCccccCCCCCCCEEEEeeEEE
Q 013229 12 VFVATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 12 V~vgTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGfQEi 50 (447)
+-|.||||||..-..+. |.+||.. ..||| +++||.
T Consensus 8 mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred ceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 56899999987543222 6778863 46787 568996
No 27
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.40 E-value=0.00071 Score=63.08 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=41.3
Q ss_pred cceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEccccccc
Q 013229 227 GNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRI 306 (447)
Q Consensus 227 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi 306 (447)
-..|++.+.+...+..+.++|+|++++.. ...+...+..+++.+ ....++++||||-..
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~------------------~~~~~Ii~GDfN~~~ 159 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM------------------GPKRLIFGGDANAKS 159 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT------------------CSSSEEEEEECCCCC
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh------------------CCCcEEEEeccccCc
Confidence 35677888888888899999999998753 223344555555432 124599999999543
No 28
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=97.05 E-value=0.0018 Score=63.09 Aligned_cols=38 Identities=34% Similarity=0.521 Sum_probs=26.6
Q ss_pred EEEeeCCCCCCCCC----CCCccccCCCCCCCEEEEeeEEEEec
Q 013229 14 VATWNVGGKTPHSG----LNLDDFLQVDGQSDIYILGFQEIVPL 53 (447)
Q Consensus 14 vgTWNV~g~~P~~~----~dL~~wL~~~~~~DIyviGfQEiV~L 53 (447)
|+|||+-|..+.++ ..+..||..+..|||+ .+||+--+
T Consensus 7 v~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIl--aLQEa~~~ 48 (261)
T 1sr4_B 7 VATWNLQGSSAVNESKWNINVRQLLSGEQGADIL--MVQEAGSL 48 (261)
T ss_dssp EEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEE--EEESCCSC
T ss_pred EEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEE--EEecCCCC
Confidence 89999999654331 1256688776789985 57998544
No 29
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=96.81 E-value=0.0041 Score=65.19 Aligned_cols=35 Identities=14% Similarity=-0.013 Sum_probs=22.4
Q ss_pred ccceeeecCCe-eeeeec-cCCCCcCCCcCccceEEE
Q 013229 381 CDRILWHGTGI-QQLSYI-RGESRFSDHRPVCAMFSV 415 (447)
Q Consensus 381 cDRIL~~~~~i-~~l~Y~-~~e~~~SDHkPV~a~F~v 415 (447)
-|+||....-. ....+. ..+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 69999875422 122222 234578999999998864
No 30
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.48 E-value=0.00094 Score=73.28 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccccccCHHHHHHHHh
Q 013229 239 HRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSYLDTRKLLE 318 (447)
Q Consensus 239 ~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~~~v~~li~ 318 (447)
.+..|+++|+||.++.... ..|......+++.+. .............-.....||++||||--- .+.+.+.+.
T Consensus 545 ~g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~--~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P---~s~~~~~l~ 617 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLE--TLLKEETSHNFRQDIKKFPVLICGDFNSYI---NSAVYELIN 617 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCC--chHHHHHHHHHHHHH--HHHHHhcccccccccCCCceEEecccCCCC---CCcceEeee
Confidence 4678999999999864321 234444444443321 000000000000001234699999999543 234444444
Q ss_pred hC
Q 013229 319 QN 320 (447)
Q Consensus 319 ~~ 320 (447)
.+
T Consensus 618 ~~ 619 (727)
T 4b8c_D 618 TG 619 (727)
T ss_dssp --
T ss_pred cC
Confidence 43
No 31
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=95.25 E-value=0.021 Score=55.57 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=37.2
Q ss_pred cceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccccc
Q 013229 227 GNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLNYR 305 (447)
Q Consensus 227 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyR 305 (447)
+....++|++ . .+.|.+.|+.|..+. .|.+....|...+. . .+..+-..--.+++||||=.
T Consensus 129 ~~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~~~--~--------~~~~~~~~~pwii~GDFNr~ 189 (262)
T 2f1n_A 129 GGRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNFFR--D--------SRDPVHQALNWMILGDFNRE 189 (262)
T ss_dssp TCCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHHHH--T--------CSSHHHHTCEEEEEEECSSC
T ss_pred CCCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHHHh--c--------CcccccCCCcEEEEecCCCC
Confidence 3788888887 2 488999999998432 25555666655321 1 01100001358999999954
No 32
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=95.00 E-value=0.068 Score=54.82 Aligned_cols=77 Identities=8% Similarity=0.051 Sum_probs=41.9
Q ss_pred CeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCC-CCCCCCCCCCCCCccccCccceEEEcccccccccCHHHHHHHHh
Q 013229 240 RTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQ-FPKICRTPGSSVPEKILDHDRVIWLGDLNYRIALSYLDTRKLLE 318 (447)
Q Consensus 240 ~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~-F~~~~~~~~~~~~~~i~~~d~vfw~GDLNyRi~l~~~~v~~li~ 318 (447)
+..|+++|+||..+... ...|..+...|++.+. |........ .....-...-.+|++||||-- +...+-+++.
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~-~~~~~~~~~~PvIl~GDFNs~---P~s~vy~~L~ 267 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRP-GSPTADPNSIPLVLCADLNSL---PDSGVVEYLS 267 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC--------------CCCEEEEEECSCC---TTSHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhccc-ccccccCCCCceEEEeeCCCC---CCCHHHHHHh
Confidence 35699999999997543 3456677776665431 110000000 000000012369999999954 4566777777
Q ss_pred hCCh
Q 013229 319 QNDW 322 (447)
Q Consensus 319 ~~~~ 322 (447)
.|..
T Consensus 268 ~G~v 271 (398)
T 3ngq_A 268 NGGV 271 (398)
T ss_dssp HTEE
T ss_pred cCCC
Confidence 6643
No 33
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=63.54 E-value=0.59 Score=48.76 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=23.5
Q ss_pred EEEEEEeeCCCCCCCC--C-CCCccccCCCCCCCEEEEeeEEE
Q 013229 11 RVFVATWNVGGKTPHS--G-LNLDDFLQVDGQSDIYILGFQEI 50 (447)
Q Consensus 11 ~V~vgTWNV~g~~P~~--~-~dL~~wL~~~~~~DIyviGfQEi 50 (447)
.+-|.||||+|-.... . ..|.+||.. ..||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEec
Confidence 4678999999843211 1 125666653 35886 778997
No 34
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=59.87 E-value=7.2 Score=36.41 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=13.0
Q ss_pred CCcCCCcCccceEEE
Q 013229 401 SRFSDHRPVCAMFSV 415 (447)
Q Consensus 401 ~~~SDHkPV~a~F~v 415 (447)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 468999999999875
No 35
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=44.69 E-value=9.1 Score=36.94 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=35.3
Q ss_pred cceeEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccCccceEEEcccc
Q 013229 227 GNKGCISVSMSFHRTSFCFVCSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPGSSVPEKILDHDRVIWLGDLN 303 (447)
Q Consensus 227 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 303 (447)
-..|++.|+ +.+ +.|++.||.+.... .|..-...|...+ .... ..+. ..+...+++||||
T Consensus 120 ~~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~~--~~~~-----~~~~--~~~~~~ii~GDFN 179 (261)
T 1sr4_B 120 QSRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTTF--NSSS-----SPPE--RRVYSWMVVGDFN 179 (261)
T ss_dssp CCCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHHH--HC--------CGG--GGGCEEEEEEECS
T ss_pred cCcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHHH--Hhcc-----cCCc--ccCCcEEEEeeCC
Confidence 378888874 777 99999999998522 1333344444421 1000 0010 0235789999999
No 36
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=39.80 E-value=5.9 Score=41.46 Aligned_cols=17 Identities=47% Similarity=0.782 Sum_probs=14.5
Q ss_pred ccCccceEEEccccccc
Q 013229 290 ILDHDRVIWLGDLNYRI 306 (447)
Q Consensus 290 i~~~d~vfw~GDLNyRi 306 (447)
+..++.||+=||||||=
T Consensus 374 L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 374 LQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HTTCSEEEEEHHHHHHH
T ss_pred HhhCcEEEEecchhhhh
Confidence 45689999999999984
No 37
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=39.57 E-value=8.9 Score=23.71 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=7.9
Q ss_pred cCccccccee
Q 013229 376 RTPAWCDRIL 385 (447)
Q Consensus 376 R~PSWcDRIL 385 (447)
-.|+|.|||=
T Consensus 7 cr~nWs~RV~ 16 (26)
T 2yka_B 7 CKTSWADRVR 16 (26)
Confidence 4589999983
No 38
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=26.76 E-value=40 Score=29.09 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=20.8
Q ss_pred EEeeCCCCCCCCCCCCccccCCCCCCCEEEEee
Q 013229 15 ATWNVGGKTPHSGLNLDDFLQVDGQSDIYILGF 47 (447)
Q Consensus 15 gTWNV~g~~P~~~~dL~~wL~~~~~~DIyviGf 47 (447)
-.|++..-..-...+|...+...+.|||++||.
T Consensus 43 ~~W~~~~~~~l~~e~l~~l~~~~p~pevliiGT 75 (135)
T 2fvt_A 43 WGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGT 75 (135)
T ss_dssp EEESCCSTTCCCTTTTHHHHHTTTSCSEEEEEC
T ss_pred cccCCCCcccCCHHHHHHHHhcCCCCCEEEEcC
Confidence 679886322111123555666677899999995
Done!